RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10185
         (196 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 69.0 bits (167), Expect = 7e-15
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 24  PILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKAF-----HYDSLRQALVHIFRTEG 78
             L   L+G ++  +S   + P++ +K  LQ  H+         Y  +   +V I + +G
Sbjct: 5   SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG 64

Query: 79  LKGLWSGTVATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLF--QLACGGAAGAT 136
               W G +A ++R  P   L+F F  + K     G++     +  F   LA GGAAGAT
Sbjct: 65  FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGAT 124

Query: 137 ATLVTQPADIIKTRIQLTCQSP 158
           +     P D  +TR+       
Sbjct: 125 SLCFVYPLDFARTRLAADVGKG 146



 Score = 65.1 bits (157), Expect = 2e-13
 Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 18/201 (8%)

Query: 9   WINIGDSVHYSPPRSPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKAFH---YDS 65
            I +G    +          L SG  +G  S   + PLD  +TRL ++  K      +  
Sbjct: 95  QIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTG 154

Query: 66  LRQALVHIFRTEGLKGLWSGTVATLVRDAPYSGLHFMFYTQAKSFKPTGLNETTPGYVLF 125
           L   +  IF+++GL+GL+ G   ++     Y   +F  Y  AK        +    +++ 
Sbjct: 155 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML----PDPKNVHIIV 210

Query: 126 QLACGGAAGATATLVTQPADIIKTRIQLTCQSPATSSLK----------YADYGVLGFVQ 175
                    A A LV+ P D ++ R+ +         +             D G   F +
Sbjct: 211 SWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFK 270

Query: 176 GFVPRMLKRTLMSAISWTIFE 196
           G    +L R +  A    +++
Sbjct: 271 GAWSNVL-RGMGGAFVLVLYD 290



 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 2   NIACPVVWINIGDSVHYSPPRSPILHALLSGSISGTVSTILLQPLDVIKTRLQSNHSKA- 60
             A      +    +   P    I+ + +       V+ ++  P D ++ R+     +  
Sbjct: 185 YRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG 244

Query: 61  --FHYDSLRQALVHIFRTEGLKGLWSGTVATLVRDAPYSGLHFMFYTQ 106
               Y         I + EG K  + G  + ++R         + Y +
Sbjct: 245 ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDE 291


>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron
           transfer flavoprotein alpha subunit {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 124

 Score = 25.1 bits (55), Expect = 3.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 164 KYADYGVLGFVQGFVPRMLKR 184
           + ADYG++  +   VP M + 
Sbjct: 102 QVADYGIVADLFKVVPEMTEI 122


>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
           transfer flavoprotein alpha subunit {Methylophilus
           methylotrophus [TaxId: 17]}
          Length = 123

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 3/21 (14%), Positives = 8/21 (38%)

Query: 164 KYADYGVLGFVQGFVPRMLKR 184
             A YG++  +      +  +
Sbjct: 102 TIAKYGIVADIFDIEEELKAQ 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,979
Number of extensions: 27530
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 7
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)