BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10186
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%)
Query: 7 TLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66
++ +A ++ VLWR++G+ + L N + KWIPQ D+L HP R FI+HGG N
Sbjct: 41 NVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIY 100
Query: 67 EAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121
EAI++GIP +G+P + DQ ++ H GA V + + + + A V+N+P
Sbjct: 101 EAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDP 155
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 7 TLLVTAFSRTGLTVLWRYEGDSIENLPGNV--------HIRKWIPQQDVLAHPNCRLFIS 58
T L + G +W + GD E LP I W PQ ++L H + +F++
Sbjct: 292 TALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLT 351
Query: 59 HGGVNSALEAIHYGIPIIGVPFYGDQ-LSHV--RHIVDLGAGVELSYFNITLESIAWATS 115
H G NS LE I G+P+I PF+GDQ L+ + ++++G GV+ +T ESI A
Sbjct: 352 HSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGV--LTKESIKKALE 409
Query: 116 IVLNNPR 122
+ +++ +
Sbjct: 410 LTMSSEK 416
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 31 NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRH 90
+P NV + +W+PQ D+L FI+H G+ S +EA+ +P++ VP +Q +
Sbjct: 302 EVPPNVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAER 359
Query: 91 IVDLGAGVELSYFNITLESIAWATSIVLNNP 121
IV+LG G + +T E + A V ++P
Sbjct: 360 IVELGLGRHIPRDQVTAEKLREAVLAVASDP 390
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGD-QLSHVRH 90
L G I W PQ +VLAH F+SH G NS LE++ +G+PI+ P Y + QL+ R
Sbjct: 330 LEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL 389
Query: 91 IVDLGAGVEL 100
+ + G G+ L
Sbjct: 390 VKEWGVGLGL 399
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGD-QLSHVRH 90
L G I W PQ +VLAH F+SH G NS LE++ +G+PI+ P Y + QL+ R
Sbjct: 330 LEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL 389
Query: 91 IVDLGAGVEL 100
+ + G G+ L
Sbjct: 390 VKEWGVGLGL 399
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQ 84
W PQ VLAHP+ F++H G NS LE++ GIP+I P Y +Q
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQ 389
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 52.8 bits (125), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 29 IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHV 88
+E G + W PQ +VLAH F++H G NS E++ G+P+I PF+GDQ +
Sbjct: 320 LEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNG 379
Query: 89 RHIVDL 94
R + D+
Sbjct: 380 RMVEDV 385
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD 93
I W PQ VL HP+ F++H G NS E+I G+P++ PF+ DQ + R I +
Sbjct: 357 IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICN 412
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLS-HVRH 90
LP NV +WIP VLAH R ++HG + LEA G+P++ VP + + +
Sbjct: 279 LPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336
Query: 91 IVDLGAG 97
+++LG G
Sbjct: 337 VIELGLG 343
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHI 91
LP NV + W+PQ +L + LF++H G + E + P+I VP DQ + +
Sbjct: 281 LPDNVEVHDWVPQLAILRQAD--LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
Query: 92 VDLGAGVELSYFNITLESIAWATSIVLNNP 121
LG +L+ T + + ++++P
Sbjct: 339 QGLGVARKLATEEATADLLRETALALVDDP 368
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 29 IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHV 88
+ +LP N I + +P L C L I GG +A A GIP + +P Y DQ +
Sbjct: 265 LTDLPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYA 322
Query: 89 RHIVDLGAGVEL 100
R++ GAG+ L
Sbjct: 323 RNLAAAGAGICL 334
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 29 IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHV 88
+ +LP N I + +P L C L I GG +A A GIP + +P Y DQ +
Sbjct: 265 LTDLPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYA 322
Query: 89 RHIVDLGAGVEL 100
R++ GAG+ L
Sbjct: 323 RNLAAAGAGICL 334
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 31 NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRH 90
+P NV + W+PQ +L P+ L + HGG + L A+ G+P + P+ GD ++ +
Sbjct: 289 EVPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQA 346
Query: 91 IVDLGAGVELSYFNITLESIAWATSIVL 118
+ GAG L NI+ +S++ A +L
Sbjct: 347 VAQAGAGDHLLPDNISPDSVSGAAKRLL 374
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 28 SIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSH 87
++ +LP NV +W+P VL + ++HGG + EA+++G P++ VP D
Sbjct: 291 ALGDLPPNVEAHRWVPHVKVLEQ--ATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPX 348
Query: 88 VRHIVDLGAGVEL 100
R + LG G L
Sbjct: 349 ARRVDQLGLGAVL 361
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 28 SIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSH 87
++ +LP NV +W+P VL + ++HGG + EA+++G P++ VP D
Sbjct: 291 ALGDLPPNVEAHRWVPHVKVLEQAT--VCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPX 348
Query: 88 VRHIVDLGAGVEL 100
R + LG G L
Sbjct: 349 ARRVDQLGLGAVL 361
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 27 DSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLS 86
+ + N+P NV ++P +L P C + HGG S A +G+P + +P D
Sbjct: 312 EGVANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGV 369
Query: 87 HVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121
+ + GAG+ L +T + + + VL++P
Sbjct: 370 RAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDP 404
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 51 PNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESI 110
P C + + HGG + L + G+P + VP + R + GAGVE+ + +ES+
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 357
Query: 111 AWATSIVLNN 120
A + + ++
Sbjct: 358 LAACARIRDD 367
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 51 PNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESI 110
P C + + HGG + L + G+P + VP + R + GAGVE+ + +ES+
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 358
Query: 111 AWATS 115
A +
Sbjct: 359 LAACA 363
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 31 NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSH 87
LP NV W P +L C + HGG + + AI GIP + P DQ H
Sbjct: 280 TLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQH 334
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 33 PGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIV 92
P NV + +WIP +L C I HGG + L A+ G+P +P Q ++ +
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 93 DLGAGVELSYFNITLE 108
LG G + ++ E
Sbjct: 345 GLGIGFDAEAGSLGAE 360
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 33 PGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIV 92
P NV + +WIP +L C I HGG + L A+ G+P +P Q ++ +
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 93 DLGAGVELSYFNITLE 108
LG G + ++ E
Sbjct: 345 GLGIGFDAEAGSLGAE 360
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVEL 100
W P DV+A P C L + H G S L + G+P + +P + R + D GA + L
Sbjct: 270 WTPL-DVVA-PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIAL 327
Query: 101 SYFNITLESIA 111
+ E+IA
Sbjct: 328 LPGEDSTEAIA 338
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 31 NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSH 87
LP NV W P +L C + HGG + AI GIP + P DQ H
Sbjct: 280 TLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQH 334
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 ISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSI 116
+ HGG + G P + VP DQ + + DLG GV T+ES++ A +
Sbjct: 289 VHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALAT 348
Query: 117 VL 118
L
Sbjct: 349 AL 350
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 ISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSI 116
I HGG + A G P I +P DQ + + +LG GV T +S++ A +
Sbjct: 306 IHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALAT 365
Query: 117 VL 118
L
Sbjct: 366 AL 367
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 ISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSI 116
I HG + A G+P + +P DQ + LG GV T ES++ A +
Sbjct: 307 IHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTT 366
Query: 117 VL 118
VL
Sbjct: 367 VL 368
>pdb|1UJQ|A Chain A, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|B Chain B, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|C Chain C, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|D Chain D, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1O5Q|A Chain A, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|B Chain B, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|C Chain C, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|D Chain D, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
Length = 305
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 55 LFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHI---------VDLGAGVELSYFNI 105
+++S GGV + G+P +G+ D L+ +R I VD G S FN+
Sbjct: 44 IYLSGGGVAAG----SLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFGSSAFNV 99
Query: 106 --TLESIAWATSIVL 118
T++SIA A + L
Sbjct: 100 ARTVKSIAKAGAAAL 114
>pdb|3RL3|A Chain A, Rat Metallophosphodiesterase Mpped2
Length = 296
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGG 61
S G T+ V +S Y + P +VH+ IP + R F+
Sbjct: 9 SQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTR-FVCISD 67
Query: 62 VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118
+S + I +P YGD L H +LG E+ FN L ++ + IV+
Sbjct: 68 THSRTDGIQ--MP------YGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVI 116
>pdb|3RL4|A Chain A, Rat Metallophosphodiesterase Mpped2 G252h Mutant
Length = 296
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGG 61
S G T+ V +S Y + P +VH+ IP + R F+
Sbjct: 9 SQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTR-FVCISD 67
Query: 62 VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118
+S + I +P YGD L H +LG E+ FN L ++ + IV+
Sbjct: 68 THSRTDGIQ--MP------YGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVI 116
>pdb|3RL5|A Chain A, Rat Metallophosphodiesterase Mpped2 H67r Mutant
Length = 296
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGG 61
S G T+ V +S Y + P +VH+ IP + R F+
Sbjct: 9 SQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTR-FVCISD 67
Query: 62 VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118
S + I +P YGD L H +LG E+ FN L ++ + IV+
Sbjct: 68 TRSRTDGIQ--MP------YGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVI 116
>pdb|3IZ3|D Chain D, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|E Chain E, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
Length = 291
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 28 SIENLPGNVHIRKWIPQ-------QDVLAHPN----CRLFISHGGVNSALEAIHYGIPII 76
S N+PGNV+I I Q Q+V AH L + + L+ + Y I
Sbjct: 58 SARNVPGNVYIEDAITQALFGISAQNVNAHGYFSRLSALALPNTSARLGLDGVIYNSETI 117
Query: 77 GVPFY 81
+PFY
Sbjct: 118 NIPFY 122
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 13 FSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYG 72
+R G+T+ W+ + +++ + +W+ ++V N R+ +G N +E ++YG
Sbjct: 211 LTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREV----NFRIG-DYGAGNPGIEGLYYG 265
Query: 73 IP 74
P
Sbjct: 266 TP 267
>pdb|3J17|D Chain D, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|E Chain E, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 448
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 28 SIENLPGNVHIRKWIPQ-------QDVLAHPN----CRLFISHGGVNSALEAIHYGIPII 76
S N+PGNV+I I Q Q+V AH L + + L+ + Y I
Sbjct: 58 SARNVPGNVYIEDAITQALFGISAQNVNAHGYFSRLSALALPNTSARLGLDGVIYNSETI 117
Query: 77 GVPFY 81
+PFY
Sbjct: 118 NIPFY 122
>pdb|3IZX|D Chain D, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|E Chain E, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 448
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 28 SIENLPGNVHIRKWIPQ-------QDVLAHPN----CRLFISHGGVNSALEAIHYGIPII 76
S N+PGNV+I I Q Q+V AH L + + L+ + Y I
Sbjct: 58 SARNVPGNVYIEDAITQALFGISAQNVNAHGYFSRLSALALPNTSARLGLDGVIYNSETI 117
Query: 77 GVPFY 81
+PFY
Sbjct: 118 NIPFY 122
>pdb|2LPM|A Chain A, Chemical Shift And Structure Assignments For Sma0114
Length = 123
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 43 PQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHV 88
P D+LA N + G + L+ + IP++ PF +L V
Sbjct: 70 PVADILAERNVPFIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAV 115
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 6 RTLLVTAFSRTGLTVLWRYEGDSIENL-PGNVHIRKWIPQQDVLAHPNCRLFI 57
R +++TA +R + EG+S NL NV+I K+I V PNC+L +
Sbjct: 90 RLVVITAGAR-------QQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLV 135
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 6 RTLLVTAFSRTGLTVLWRYE---------GDSIENLPGNVHIRKWIPQQDVLAHPNCRLF 56
R + VTAFS+ +++W + G E + V Q +L H +
Sbjct: 4 RIIPVTAFSQN-CSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGH---- 58
Query: 57 ISHGGVNSALEAIHYGIPIIG 77
+ H G S L A HYG+P+IG
Sbjct: 59 LDHVGAASEL-AQHYGVPVIG 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,991,268
Number of Sequences: 62578
Number of extensions: 159687
Number of successful extensions: 357
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 37
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)