Query psy10186
Match_columns 124
No_of_seqs 112 out of 1270
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 20:04:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00201 UDPGT: UDP-glucoronos 100.0 1.6E-31 3.5E-36 199.4 8.9 124 1-124 290-413 (500)
2 PHA03392 egt ecdysteroid UDP-g 100.0 2.5E-30 5.4E-35 193.3 13.6 124 1-124 312-436 (507)
3 PLN03004 UDP-glycosyltransfera 99.9 3.7E-27 8.1E-32 173.8 12.4 124 1-124 283-428 (451)
4 PLN02670 transferase, transfer 99.9 6.2E-27 1.3E-31 173.4 12.6 121 1-121 291-430 (472)
5 PLN02562 UDP-glycosyltransfera 99.9 7.3E-27 1.6E-31 172.5 12.9 122 1-124 287-417 (448)
6 PLN02554 UDP-glycosyltransfera 99.9 3.1E-27 6.6E-32 175.9 10.4 124 1-124 287-445 (481)
7 PLN02410 UDP-glucoronosyl/UDP- 99.9 2.5E-26 5.4E-31 169.7 13.9 120 1-121 277-411 (451)
8 PLN02207 UDP-glycosyltransfera 99.9 2.5E-26 5.4E-31 170.0 11.5 119 1-119 288-425 (468)
9 PLN02210 UDP-glucosyl transfer 99.9 8.5E-26 1.9E-30 167.1 13.4 122 1-122 282-417 (456)
10 PLN02555 limonoid glucosyltran 99.9 1.4E-25 3.1E-30 166.5 13.8 121 1-121 290-430 (480)
11 PLN02167 UDP-glycosyltransfera 99.9 6.1E-26 1.3E-30 168.8 11.5 121 1-121 293-435 (475)
12 PLN02992 coniferyl-alcohol glu 99.9 2.2E-25 4.7E-30 165.4 13.6 121 1-121 276-428 (481)
13 COG1819 Glycosyl transferases, 99.9 2.2E-25 4.8E-30 163.0 11.8 119 4-124 252-372 (406)
14 PLN02152 indole-3-acetate beta 99.9 2.7E-25 5.9E-30 164.1 12.0 122 1-122 274-419 (455)
15 PLN00164 glucosyltransferase; 99.9 6.3E-25 1.4E-29 163.4 13.8 122 1-122 285-433 (480)
16 PLN02208 glycosyltransferase f 99.9 7.4E-25 1.6E-29 161.5 13.8 122 1-122 264-403 (442)
17 PLN03007 UDP-glucosyltransfera 99.9 5.2E-25 1.1E-29 164.1 12.2 121 1-121 298-441 (482)
18 PLN02448 UDP-glycosyltransfera 99.9 1.1E-24 2.3E-29 161.6 13.3 121 1-121 287-416 (459)
19 PLN02863 UDP-glucoronosyl/UDP- 99.9 5.8E-25 1.2E-29 163.4 11.4 123 1-123 296-437 (477)
20 PLN02173 UDP-glucosyl transfer 99.9 1.7E-24 3.6E-29 159.8 13.6 120 1-122 277-410 (449)
21 PLN03015 UDP-glucosyl transfer 99.9 4.9E-24 1.1E-28 157.7 13.8 119 1-119 280-425 (470)
22 PLN02764 glycosyltransferase f 99.9 2.8E-24 6.1E-29 158.5 12.5 121 1-121 270-408 (453)
23 KOG1192|consensus 99.9 2.5E-24 5.4E-29 160.5 12.0 123 1-123 293-425 (496)
24 cd03784 GT1_Gtf_like This fami 99.9 2.2E-24 4.7E-29 157.1 10.6 118 3-122 255-374 (401)
25 PLN00414 glycosyltransferase f 99.9 3.6E-24 7.8E-29 158.1 11.7 121 1-121 265-403 (446)
26 TIGR01426 MGT glycosyltransfer 99.9 2.4E-23 5.3E-28 151.4 12.6 119 4-124 241-363 (392)
27 PLN02534 UDP-glycosyltransfera 99.9 8.2E-22 1.8E-26 146.8 13.3 119 1-119 296-443 (491)
28 PF13528 Glyco_trans_1_3: Glyc 99.8 1.6E-18 3.6E-23 122.8 11.9 107 8-117 206-317 (318)
29 PF04101 Glyco_tran_28_C: Glyc 99.8 2.8E-20 6E-25 121.3 2.3 104 17-122 31-146 (167)
30 PRK12446 undecaprenyldiphospho 99.8 5.1E-18 1.1E-22 122.4 9.2 103 17-121 214-326 (352)
31 COG0707 MurG UDP-N-acetylgluco 99.7 5.3E-17 1.1E-21 117.1 12.0 115 5-121 201-325 (357)
32 TIGR00661 MJ1255 conserved hyp 99.7 8.7E-17 1.9E-21 114.6 12.1 112 6-123 200-317 (321)
33 PRK00726 murG undecaprenyldiph 99.6 7.7E-14 1.7E-18 100.4 11.8 111 11-123 204-327 (357)
34 cd03785 GT1_MurG MurG is an N- 99.5 1.5E-13 3.3E-18 98.3 11.5 113 8-122 202-326 (350)
35 COG4671 Predicted glycosyl tra 99.5 1.5E-12 3.3E-17 92.4 11.1 118 4-122 234-367 (400)
36 PRK13608 diacylglycerol glucos 99.4 1.1E-12 2.4E-17 95.9 10.3 113 5-122 217-340 (391)
37 KOG3349|consensus 99.4 2.8E-12 6.1E-17 81.1 10.4 96 7-104 25-136 (170)
38 PRK13609 diacylglycerol glucos 99.4 4.8E-12 1E-16 91.9 10.6 111 6-122 218-340 (380)
39 TIGR01133 murG undecaprenyldip 99.4 1.1E-11 2.4E-16 88.6 11.0 111 11-123 203-324 (348)
40 PLN02605 monogalactosyldiacylg 99.4 8.3E-12 1.8E-16 91.0 10.1 99 17-120 241-347 (382)
41 TIGR03590 PseG pseudaminic aci 99.3 7.9E-12 1.7E-16 87.8 7.8 84 5-90 185-278 (279)
42 COG3980 spsG Spore coat polysa 99.1 9.8E-10 2.1E-14 76.3 8.8 117 5-124 173-297 (318)
43 TIGR03492 conserved hypothetic 98.9 5.2E-09 1.1E-13 76.9 6.8 81 36-122 281-366 (396)
44 COG5017 Uncharacterized conser 98.9 5E-08 1.1E-12 61.1 9.5 84 18-103 31-124 (161)
45 TIGR00215 lpxB lipid-A-disacch 98.8 1.1E-08 2.3E-13 75.0 6.7 75 44-121 261-348 (385)
46 cd03814 GT1_like_2 This family 98.7 1.2E-07 2.6E-12 67.2 8.2 100 17-122 227-334 (364)
47 TIGR00236 wecB UDP-N-acetylglu 98.7 2.5E-07 5.4E-12 67.0 9.5 109 6-122 214-336 (365)
48 PRK05749 3-deoxy-D-manno-octul 98.6 6.3E-07 1.4E-11 66.2 11.1 82 35-122 303-390 (425)
49 cd03823 GT1_ExpE7_like This fa 98.6 3.3E-07 7.1E-12 64.7 9.1 100 17-122 220-331 (359)
50 PRK00025 lpxB lipid-A-disaccha 98.6 2.7E-07 5.8E-12 67.0 8.0 77 44-123 255-344 (380)
51 cd03795 GT1_like_4 This family 98.6 6.2E-07 1.3E-11 63.7 9.0 112 5-122 205-334 (357)
52 cd03800 GT1_Sucrose_synthase T 98.6 3.8E-07 8.3E-12 65.9 7.8 84 33-122 282-370 (398)
53 cd03804 GT1_wbaZ_like This fam 98.6 2.5E-07 5.5E-12 66.3 6.7 111 5-121 209-327 (351)
54 cd03786 GT1_UDP-GlcNAc_2-Epime 98.6 7.9E-07 1.7E-11 64.0 9.3 111 3-123 214-340 (363)
55 PRK09922 UDP-D-galactose:(gluc 98.5 3.2E-06 7E-11 61.1 11.1 114 6-124 197-328 (359)
56 PLN02871 UDP-sulfoquinovose:DA 98.5 5.3E-07 1.2E-11 67.4 7.1 113 4-122 276-402 (465)
57 PF00534 Glycos_transf_1: Glyc 98.5 3.1E-07 6.8E-12 59.5 5.2 83 32-122 71-160 (172)
58 cd03817 GT1_UGDG_like This fam 98.5 8.2E-07 1.8E-11 62.8 7.7 99 17-122 233-345 (374)
59 PRK15427 colanic acid biosynth 98.5 5.2E-07 1.1E-11 66.5 6.7 85 32-122 277-373 (406)
60 cd05844 GT1_like_7 Glycosyltra 98.5 1.8E-06 4E-11 61.8 9.2 85 32-122 243-338 (367)
61 cd03801 GT1_YqgM_like This fam 98.4 1.4E-06 3E-11 61.1 7.9 85 32-122 254-343 (374)
62 PRK15484 lipopolysaccharide 1, 98.4 4E-06 8.6E-11 61.3 10.4 86 32-122 255-346 (380)
63 cd03794 GT1_wbuB_like This fam 98.4 1.9E-06 4.2E-11 61.1 8.3 85 32-122 273-367 (394)
64 cd03821 GT1_Bme6_like This fam 98.4 1.8E-06 3.9E-11 61.0 8.0 83 32-122 260-347 (375)
65 cd04946 GT1_AmsK_like This fam 98.4 2.4E-06 5.3E-11 63.0 8.6 85 33-122 288-379 (407)
66 cd03798 GT1_wlbH_like This fam 98.4 6.5E-06 1.4E-10 57.9 9.7 85 32-122 257-346 (377)
67 cd03808 GT1_cap1E_like This fa 98.3 4.2E-06 9.2E-11 58.7 8.5 82 33-122 245-331 (359)
68 cd03799 GT1_amsK_like This is 98.3 6.4E-06 1.4E-10 58.5 9.3 85 32-122 234-329 (355)
69 cd03812 GT1_CapH_like This fam 98.3 9.1E-06 2E-10 57.9 10.1 84 32-124 247-335 (358)
70 COG1519 KdtA 3-deoxy-D-manno-o 98.3 1.5E-05 3.3E-10 58.5 11.1 113 3-122 270-388 (419)
71 cd03820 GT1_amsD_like This fam 98.3 6.2E-06 1.3E-10 57.6 8.9 84 32-123 233-322 (348)
72 cd03805 GT1_ALG2_like This fam 98.3 7.2E-06 1.6E-10 59.4 9.3 84 32-122 278-366 (392)
73 cd04962 GT1_like_5 This family 98.3 5.3E-06 1.1E-10 59.5 8.2 99 16-122 226-338 (371)
74 TIGR03449 mycothiol_MshA UDP-N 98.3 7.7E-06 1.7E-10 59.8 8.5 85 32-122 281-370 (405)
75 cd03818 GT1_ExpC_like This fam 98.2 6.4E-06 1.4E-10 60.2 7.4 84 33-122 280-368 (396)
76 cd03825 GT1_wcfI_like This fam 98.2 1.1E-05 2.3E-10 57.6 8.4 83 32-122 242-332 (365)
77 cd04951 GT1_WbdM_like This fam 98.2 1E-05 2.2E-10 57.6 7.9 93 17-119 219-325 (360)
78 cd03819 GT1_WavL_like This fam 98.2 3.2E-05 6.9E-10 55.0 10.4 79 32-118 244-328 (355)
79 TIGR03088 stp2 sugar transfera 98.2 5.1E-06 1.1E-10 60.0 6.3 82 33-122 254-340 (374)
80 cd03807 GT1_WbnK_like This fam 98.2 1.1E-05 2.4E-10 56.8 7.5 81 32-122 249-334 (365)
81 cd03816 GT1_ALG1_like This fam 98.2 1.3E-05 2.8E-10 59.3 7.9 79 34-120 294-381 (415)
82 TIGR02149 glgA_Coryne glycogen 98.1 1.5E-05 3.3E-10 57.7 7.7 113 6-122 216-354 (388)
83 cd03802 GT1_AviGT4_like This f 98.1 1.5E-05 3.2E-10 56.3 7.5 106 6-119 186-307 (335)
84 cd03822 GT1_ecORF704_like This 98.1 3.3E-05 7.3E-10 54.7 9.1 84 32-122 245-336 (366)
85 cd03809 GT1_mtfB_like This fam 98.1 4.8E-06 1E-10 59.1 4.0 84 32-123 251-339 (365)
86 cd03811 GT1_WabH_like This fam 98.0 6.4E-05 1.4E-09 52.5 9.2 83 32-122 244-334 (353)
87 TIGR03087 stp1 sugar transfera 98.0 4.1E-05 8.9E-10 56.1 8.1 81 33-122 279-364 (397)
88 TIGR02472 sucr_P_syn_N sucrose 98.0 1.7E-05 3.7E-10 59.0 6.2 85 32-122 315-408 (439)
89 cd03792 GT1_Trehalose_phosphor 98.0 4E-05 8.7E-10 55.6 8.0 81 32-122 250-339 (372)
90 cd03813 GT1_like_3 This family 98.0 9.9E-05 2.2E-09 55.5 10.0 83 32-122 352-444 (475)
91 PRK15179 Vi polysaccharide bio 98.0 8.8E-05 1.9E-09 58.3 10.0 84 32-120 572-659 (694)
92 PLN02275 transferase, transfer 98.0 4.3E-05 9.2E-10 55.7 7.6 77 34-118 286-371 (371)
93 cd03796 GT1_PIG-A_like This fa 98.0 6.5E-05 1.4E-09 55.1 8.4 82 32-121 248-334 (398)
94 PRK10307 putative glycosyl tra 97.9 6.4E-05 1.4E-09 55.2 7.9 83 34-122 284-375 (412)
95 PF13692 Glyco_trans_1_4: Glyc 97.9 2.4E-05 5.3E-10 48.6 4.7 94 17-120 34-135 (135)
96 cd04949 GT1_gtfA_like This fam 97.9 0.00016 3.5E-09 52.1 9.3 84 32-122 259-347 (372)
97 TIGR03568 NeuC_NnaA UDP-N-acet 97.9 0.00021 4.6E-09 52.2 9.7 106 3-119 219-338 (365)
98 TIGR02918 accessory Sec system 97.9 0.0002 4.4E-09 54.4 9.9 83 32-120 374-467 (500)
99 cd04955 GT1_like_6 This family 97.9 5.3E-05 1.2E-09 54.0 6.2 106 6-121 208-331 (363)
100 cd03806 GT1_ALG11_like This fa 97.8 0.00019 4.2E-09 53.2 8.4 83 32-121 303-393 (419)
101 PF02350 Epimerase_2: UDP-N-ac 97.7 0.0001 2.2E-09 53.6 6.0 108 4-120 200-318 (346)
102 PF13844 Glyco_transf_41: Glyc 97.7 0.00012 2.5E-09 55.1 6.2 114 2-118 298-428 (468)
103 cd04950 GT1_like_1 Glycosyltra 97.7 0.0011 2.3E-08 48.4 11.1 95 17-121 232-341 (373)
104 TIGR02095 glgA glycogen/starch 97.6 0.00017 3.8E-09 54.1 6.1 102 10-119 313-436 (473)
105 TIGR02468 sucrsPsyn_pln sucros 97.6 0.00014 3E-09 59.3 5.8 86 32-123 546-640 (1050)
106 PF04007 DUF354: Protein of un 97.6 0.0016 3.4E-08 47.2 10.7 105 4-118 199-308 (335)
107 cd01635 Glycosyltransferase_GT 97.6 0.00034 7.4E-09 46.2 6.7 65 17-82 135-215 (229)
108 PRK14089 ipid-A-disaccharide s 97.6 6.4E-05 1.4E-09 54.6 3.0 71 43-116 228-315 (347)
109 PLN02846 digalactosyldiacylgly 97.5 0.00073 1.6E-08 50.9 8.4 73 38-121 288-364 (462)
110 PRK15490 Vi polysaccharide bio 97.5 0.0011 2.4E-08 51.0 8.7 93 5-103 416-523 (578)
111 PLN02501 digalactosyldiacylgly 97.5 0.0014 3.1E-08 51.6 9.3 77 35-122 602-683 (794)
112 TIGR02470 sucr_synth sucrose s 97.4 0.00096 2.1E-08 53.2 8.0 81 32-118 617-707 (784)
113 PRK09814 beta-1,6-galactofuran 97.4 0.0015 3.3E-08 47.0 8.3 93 17-118 190-298 (333)
114 PRK10125 putative glycosyl tra 97.3 0.0015 3.2E-08 48.5 7.8 98 6-113 258-364 (405)
115 PHA01633 putative glycosyl tra 97.3 0.0008 1.7E-08 48.7 5.7 86 32-119 199-306 (335)
116 PRK14098 glycogen synthase; Pr 97.2 0.0027 5.8E-08 48.2 8.3 103 10-118 329-449 (489)
117 cd03791 GT1_Glycogen_synthase_ 97.2 0.0013 2.9E-08 49.2 6.4 107 9-119 317-441 (476)
118 TIGR03713 acc_sec_asp1 accesso 97.2 0.0023 4.9E-08 49.0 7.3 77 34-121 409-489 (519)
119 PLN00142 sucrose synthase 97.1 0.0023 4.9E-08 51.3 7.4 79 33-117 641-729 (815)
120 PLN02949 transferase, transfer 97.1 0.0033 7.2E-08 47.5 7.9 82 32-120 333-422 (463)
121 PRK00654 glgA glycogen synthas 97.1 0.0045 9.7E-08 46.6 8.4 95 16-119 310-427 (466)
122 PHA01630 putative group 1 glyc 97.0 0.0089 1.9E-07 43.2 8.8 73 41-120 197-294 (331)
123 PRK14099 glycogen synthase; Pr 96.9 0.0029 6.3E-08 48.0 6.2 105 15-121 322-448 (485)
124 PLN02316 synthase/transferase 96.5 0.044 9.5E-07 45.3 10.2 84 33-120 899-998 (1036)
125 PF13524 Glyco_trans_1_2: Glyc 96.4 0.0066 1.4E-07 35.3 4.0 57 59-123 9-65 (92)
126 PLN02939 transferase, transfer 96.3 0.055 1.2E-06 44.3 9.6 83 33-119 836-930 (977)
127 PRK10017 colanic acid biosynth 96.3 0.23 5E-06 37.3 12.2 111 5-121 261-393 (426)
128 PRK02155 ppnK NAD(+)/NADH kina 96.2 0.12 2.7E-06 36.8 10.2 95 4-120 21-119 (291)
129 TIGR02919 accessory Sec system 96.2 0.028 6.1E-07 42.3 7.1 108 3-121 291-412 (438)
130 COG3914 Spy Predicted O-linked 96.0 0.038 8.1E-07 42.7 7.1 97 2-100 443-560 (620)
131 TIGR02193 heptsyl_trn_I lipopo 95.9 0.048 1E-06 38.9 7.1 110 2-118 196-319 (319)
132 KOG0853|consensus 95.9 0.0028 6E-08 48.0 0.7 84 36-123 348-436 (495)
133 KOG4626|consensus 95.8 0.041 8.8E-07 43.2 6.6 100 2-101 772-888 (966)
134 PF07429 Glyco_transf_56: 4-al 95.8 0.054 1.2E-06 39.5 6.9 82 34-119 245-332 (360)
135 PRK14077 pnk inorganic polypho 95.7 0.24 5.2E-06 35.3 9.8 92 4-120 25-120 (287)
136 PF05159 Capsule_synth: Capsul 95.7 0.11 2.4E-06 36.3 8.1 72 6-80 142-226 (269)
137 TIGR02400 trehalose_OtsA alpha 95.7 0.037 7.9E-07 41.9 5.8 75 38-121 340-423 (456)
138 PF02684 LpxB: Lipid-A-disacch 95.6 0.075 1.6E-06 39.2 7.0 103 17-122 218-342 (373)
139 COG0381 WecB UDP-N-acetylgluco 95.5 0.14 3.1E-06 37.8 8.2 79 34-122 262-343 (383)
140 COG3660 Predicted nucleoside-d 95.5 0.4 8.7E-06 34.0 9.8 109 9-119 189-327 (329)
141 PRK03372 ppnK inorganic polyph 95.4 0.33 7.2E-06 34.9 9.7 98 4-120 21-128 (306)
142 PRK01231 ppnK inorganic polyph 95.3 0.41 9E-06 34.2 9.8 95 4-120 20-118 (295)
143 PRK01911 ppnK inorganic polyph 95.3 0.37 8.1E-06 34.4 9.5 99 4-120 16-120 (292)
144 PRK04539 ppnK inorganic polyph 95.2 0.49 1.1E-05 33.9 10.0 96 4-120 21-124 (296)
145 PRK10422 lipopolysaccharide co 95.1 0.15 3.2E-06 37.0 7.4 76 2-78 200-287 (352)
146 cd03789 GT1_LPS_heptosyltransf 95.1 0.14 3.1E-06 35.8 7.0 76 2-78 138-223 (279)
147 PRK10964 ADP-heptose:LPS hepto 95.0 0.11 2.4E-06 37.2 6.3 111 2-119 195-321 (322)
148 PRK01021 lpxB lipid-A-disaccha 95.0 0.058 1.3E-06 42.1 5.1 74 45-122 483-573 (608)
149 cd03788 GT1_TPS Trehalose-6-Ph 94.9 0.039 8.5E-07 41.6 3.9 76 38-121 345-428 (460)
150 PRK03378 ppnK inorganic polyph 94.8 0.6 1.3E-05 33.4 9.5 95 4-120 21-119 (292)
151 COG0438 RfaG Glycosyltransfera 94.8 0.18 3.9E-06 34.6 6.8 81 33-121 256-343 (381)
152 PRK02797 4-alpha-L-fucosyltran 94.7 0.2 4.2E-06 36.2 6.7 81 34-118 206-292 (322)
153 PRK03501 ppnK inorganic polyph 94.7 0.44 9.4E-06 33.6 8.4 55 51-120 38-97 (264)
154 PRK02231 ppnK inorganic polyph 94.6 0.81 1.8E-05 32.4 9.6 92 6-119 2-97 (272)
155 TIGR02195 heptsyl_trn_II lipop 94.5 0.17 3.8E-06 36.3 6.4 76 2-78 192-276 (334)
156 COG1817 Uncharacterized protei 94.5 0.49 1.1E-05 34.2 8.3 106 5-121 205-315 (346)
157 PRK04885 ppnK inorganic polyph 94.4 0.17 3.8E-06 35.6 5.9 29 51-79 34-68 (265)
158 PRK10916 ADP-heptose:LPS hepto 94.3 0.19 4.1E-06 36.4 6.2 76 2-78 198-286 (348)
159 PF06258 Mito_fiss_Elm1: Mitoc 94.3 0.51 1.1E-05 34.0 8.2 111 6-118 171-309 (311)
160 cd03793 GT1_Glycogen_synthase_ 93.9 0.43 9.2E-06 37.3 7.5 74 44-120 468-552 (590)
161 PRK02649 ppnK inorganic polyph 93.8 0.24 5.3E-06 35.6 5.8 99 4-120 17-124 (305)
162 TIGR02201 heptsyl_trn_III lipo 93.7 0.45 9.7E-06 34.4 7.2 76 2-78 198-285 (344)
163 PF01075 Glyco_transf_9: Glyco 93.5 0.14 2.9E-06 35.1 4.0 76 2-78 122-208 (247)
164 TIGR00725 conserved hypothetic 93.1 0.93 2E-05 29.4 7.2 39 42-81 82-124 (159)
165 PF03641 Lysine_decarbox: Poss 92.6 1.3 2.9E-05 27.7 7.3 88 7-95 2-110 (133)
166 COG0859 RfaF ADP-heptose:LPS h 92.4 0.57 1.2E-05 33.9 6.1 76 2-78 193-276 (334)
167 PRK01185 ppnK inorganic polyph 92.2 0.55 1.2E-05 33.2 5.6 53 52-120 52-105 (271)
168 PF04464 Glyphos_transf: CDP-G 91.5 0.32 6.9E-06 35.4 4.0 102 12-120 224-336 (369)
169 PRK14075 pnk inorganic polypho 91.5 0.86 1.9E-05 31.9 5.9 54 51-120 40-94 (256)
170 PLN02727 NAD kinase 90.6 3.5 7.6E-05 34.2 9.1 54 51-120 742-799 (986)
171 PLN03063 alpha,alpha-trehalose 90.5 0.34 7.4E-06 39.3 3.6 72 40-119 362-442 (797)
172 PLN02929 NADH kinase 90.5 0.89 1.9E-05 32.7 5.3 96 3-120 33-137 (301)
173 PLN02935 Bifunctional NADH kin 89.9 1.3 2.8E-05 34.1 5.9 54 51-120 261-318 (508)
174 PF11071 DUF2872: Protein of u 89.8 3.5 7.6E-05 26.0 7.5 106 2-118 7-140 (141)
175 PRK14076 pnk inorganic polypho 89.8 1.1 2.5E-05 34.9 5.8 54 51-120 347-404 (569)
176 COG4370 Uncharacterized protei 89.6 0.49 1.1E-05 34.3 3.4 81 38-123 299-382 (412)
177 PRK03708 ppnK inorganic polyph 89.2 1.5 3.2E-05 31.2 5.6 70 4-80 16-88 (277)
178 TIGR00730 conserved hypothetic 88.6 5.3 0.00012 26.4 10.5 51 44-95 89-152 (178)
179 PRK02645 ppnK inorganic polyph 88.5 3.2 6.9E-05 29.9 7.0 67 4-80 19-89 (305)
180 PF15024 Glyco_transf_18: Glyc 87.8 3.3 7.1E-05 32.4 6.9 90 30-121 318-431 (559)
181 COG0297 GlgA Glycogen synthase 86.7 8 0.00017 29.8 8.5 110 4-118 310-440 (487)
182 TIGR03646 YtoQ_fam YtoQ family 85.7 6.9 0.00015 24.8 6.5 106 2-118 10-143 (144)
183 PRK14501 putative bifunctional 85.4 0.65 1.4E-05 37.3 2.2 77 37-121 345-429 (726)
184 PRK12446 undecaprenyldiphospho 84.6 11 0.00025 27.5 8.2 72 7-78 19-120 (352)
185 PRK04761 ppnK inorganic polyph 84.6 1.4 3.1E-05 30.7 3.4 30 51-80 24-57 (246)
186 PF06722 DUF1205: Protein of u 84.5 4.3 9.4E-05 24.1 5.0 34 4-37 61-97 (97)
187 KOG1111|consensus 84.1 6 0.00013 29.5 6.4 74 5-78 212-301 (426)
188 PF05693 Glycogen_syn: Glycoge 83.9 4.3 9.3E-05 32.1 5.9 69 42-118 461-541 (633)
189 TIGR02398 gluc_glyc_Psyn gluco 82.9 5.1 0.00011 30.9 6.0 77 36-121 364-449 (487)
190 PRK00561 ppnK inorganic polyph 82.3 5 0.00011 28.3 5.4 29 51-79 32-64 (259)
191 KOG2941|consensus 81.8 19 0.00042 26.9 9.0 108 2-119 266-404 (444)
192 PF06506 PrpR_N: Propionate ca 80.6 0.72 1.6E-05 30.3 0.7 33 49-82 31-63 (176)
193 COG2099 CobK Precorrin-6x redu 80.4 16 0.00035 25.8 7.2 75 6-80 117-230 (257)
194 KOG4180|consensus 78.8 1.1 2.4E-05 32.6 1.1 28 51-78 104-135 (395)
195 cd03818 GT1_ExpC_like This fam 78.3 24 0.00052 25.8 8.6 72 5-77 12-114 (396)
196 COG0061 nadF NAD kinase [Coenz 76.1 10 0.00022 27.0 5.4 53 51-119 54-110 (281)
197 COG0379 NadA Quinolinate synth 75.5 20 0.00042 26.2 6.6 77 32-112 120-203 (324)
198 PF09547 Spore_IV_A: Stage IV 74.7 27 0.00058 26.9 7.4 72 49-120 143-235 (492)
199 PF00289 CPSase_L_chain: Carba 74.0 4.5 9.8E-05 24.6 2.8 63 6-68 14-88 (110)
200 COG0826 Collagenase and relate 72.3 37 0.0008 25.1 9.2 112 1-117 46-159 (347)
201 PRK10537 voltage-gated potassi 71.0 39 0.00084 25.4 7.6 102 6-110 252-364 (393)
202 PF01513 NAD_kinase: ATP-NAD k 70.8 5.7 0.00012 28.2 3.2 30 51-80 75-108 (285)
203 cd07039 TPP_PYR_POX Pyrimidine 69.8 27 0.00059 22.6 7.3 74 6-79 3-96 (164)
204 PF10093 DUF2331: Uncharacteri 69.2 46 0.00099 24.9 8.4 76 3-81 194-291 (374)
205 PF02445 NadA: Quinolinate syn 67.6 22 0.00048 25.6 5.5 77 32-112 97-179 (296)
206 TIGR03609 S_layer_CsaB polysac 67.5 18 0.00039 25.5 5.2 47 35-81 46-108 (298)
207 PRK13054 lipid kinase; Reviewe 67.0 37 0.00081 24.1 6.7 31 51-81 55-93 (300)
208 COG1105 FruK Fructose-1-phosph 67.0 47 0.001 24.2 7.1 90 1-97 111-216 (310)
209 PRK07092 benzoylformate decarb 66.7 23 0.0005 27.4 5.9 73 6-78 15-105 (530)
210 PRK06270 homoserine dehydrogen 66.6 35 0.00076 24.9 6.5 59 43-101 80-150 (341)
211 PF02776 TPP_enzyme_N: Thiamin 64.5 30 0.00064 22.4 5.4 74 6-80 4-98 (172)
212 PF05014 Nuc_deoxyrib_tr: Nucl 63.3 3.8 8.3E-05 24.6 0.9 75 4-81 14-98 (113)
213 COG1611 Predicted Rossmann fol 63.0 43 0.00093 22.7 6.0 26 51-76 109-139 (205)
214 cd07025 Peptidase_S66 LD-Carbo 62.8 33 0.00071 24.3 5.7 71 3-80 48-120 (282)
215 cd07037 TPP_PYR_MenD Pyrimidin 62.5 40 0.00087 21.9 6.7 72 8-79 2-93 (162)
216 cd08181 PPD-like 1,3-propanedi 62.2 32 0.0007 25.2 5.7 76 5-81 13-133 (357)
217 PRK08266 hypothetical protein; 62.1 55 0.0012 25.4 7.2 74 6-79 7-101 (542)
218 TIGR03852 sucrose_gtfA sucrose 62.0 40 0.00088 26.0 6.3 107 1-116 299-406 (470)
219 COG2327 WcaK Polysaccharide py 61.9 63 0.0014 24.3 7.1 65 51-119 284-349 (385)
220 TIGR00661 MJ1255 conserved hyp 60.4 13 0.00028 26.6 3.3 28 51-78 92-119 (321)
221 PRK13057 putative lipid kinase 60.4 12 0.00026 26.4 3.1 30 51-80 49-82 (287)
222 COG1165 MenD 2-succinyl-6-hydr 59.2 37 0.00081 26.8 5.7 77 3-79 8-104 (566)
223 PRK13982 bifunctional SbtC-lik 58.3 86 0.0019 24.3 8.4 110 7-119 87-247 (475)
224 COG3199 Predicted inorganic po 58.3 14 0.0003 27.3 3.1 30 51-80 99-131 (355)
225 TIGR00147 lipid kinase, YegS/R 58.0 16 0.00034 25.8 3.4 67 4-80 19-91 (293)
226 COG1938 Archaeal enzymes of AT 57.9 63 0.0014 22.7 8.5 115 4-118 94-224 (244)
227 smart00046 DAGKc Diacylglycero 57.8 14 0.0003 22.7 2.8 32 51-82 48-88 (124)
228 PRK15424 propionate catabolism 57.7 13 0.00028 29.1 3.1 32 51-83 63-95 (538)
229 TIGR01761 thiaz-red thiazoliny 57.1 72 0.0016 23.5 6.7 94 8-101 16-121 (343)
230 PRK13059 putative lipid kinase 57.1 14 0.0003 26.3 3.1 66 5-81 20-91 (295)
231 TIGR02720 pyruv_oxi_spxB pyruv 57.0 68 0.0015 25.2 7.0 73 7-79 3-96 (575)
232 PRK11914 diacylglycerol kinase 56.5 14 0.00031 26.3 3.0 30 51-80 63-96 (306)
233 PRK05579 bifunctional phosphop 56.4 84 0.0018 23.7 10.4 68 51-119 81-182 (399)
234 PF02006 DUF137: Protein of un 56.4 57 0.0012 21.7 5.9 74 2-78 42-116 (178)
235 COG0763 LpxB Lipid A disacchar 56.3 4.3 9.2E-05 30.2 0.3 70 51-121 263-345 (381)
236 COG1887 TagB Putative glycosyl 56.1 84 0.0018 23.6 9.0 80 36-122 272-355 (388)
237 PLN03064 alpha,alpha-trehalose 56.0 19 0.00041 30.2 3.9 73 40-119 446-526 (934)
238 cd07062 Peptidase_S66_mccF_lik 55.7 44 0.00094 24.1 5.4 42 37-80 81-124 (308)
239 PRK14116 gpmA phosphoglyceromu 54.7 9.2 0.0002 26.1 1.7 23 53-75 176-198 (228)
240 TIGR00421 ubiX_pad polyprenyl 54.4 32 0.00069 22.8 4.2 51 51-101 74-145 (181)
241 PF04127 DFP: DNA / pantothena 54.3 62 0.0014 21.5 6.2 56 5-61 31-91 (185)
242 TIGR00732 dprA DNA protecting 53.4 44 0.00095 22.9 4.9 46 62-112 171-218 (220)
243 PRK08527 acetolactate synthase 53.2 91 0.002 24.4 7.1 74 6-79 6-99 (563)
244 TIGR02329 propionate_PrpR prop 53.1 90 0.002 24.5 7.0 50 51-101 53-105 (526)
245 TIGR03848 MSMEG_4193 probable 53.1 15 0.00032 24.5 2.5 22 55-76 148-169 (204)
246 COG2159 Predicted metal-depend 53.0 70 0.0015 22.9 6.0 64 4-68 144-210 (293)
247 TIGR03845 sulfopyru_alph sulfo 52.5 52 0.0011 21.2 4.9 73 7-79 2-91 (157)
248 PF09904 HTH_43: Winged helix- 52.3 38 0.00082 19.9 3.7 41 1-43 33-73 (90)
249 PF01372 Melittin: Melittin; 52.2 2.1 4.5E-05 18.7 -1.1 17 61-77 1-17 (26)
250 PRK08611 pyruvate oxidase; Pro 51.6 1.2E+02 0.0025 23.9 7.5 75 5-79 6-101 (576)
251 PRK08322 acetolactate synthase 51.4 70 0.0015 24.8 6.2 74 6-79 4-96 (547)
252 PRK05920 aromatic acid decarbo 51.4 30 0.00064 23.5 3.7 33 67-99 125-161 (204)
253 PRK14119 gpmA phosphoglyceromu 51.0 13 0.00027 25.4 2.0 22 54-75 177-198 (228)
254 PF04230 PS_pyruv_trans: Polys 50.4 38 0.00082 22.7 4.3 29 51-80 256-284 (286)
255 PRK07064 hypothetical protein; 50.2 1.2E+02 0.0025 23.6 7.3 75 5-79 5-99 (544)
256 PRK08199 thiamine pyrophosphat 49.9 1E+02 0.0022 24.1 6.9 73 6-78 11-103 (557)
257 PF12000 Glyco_trans_4_3: Gkyc 49.8 10 0.00022 25.0 1.3 28 53-80 67-96 (171)
258 PRK13142 hisH imidazole glycer 49.7 78 0.0017 21.3 6.1 29 51-79 36-77 (192)
259 PRK08273 thiamine pyrophosphat 49.6 1.3E+02 0.0028 23.8 7.6 75 5-79 5-100 (597)
260 PLN02470 acetolactate synthase 49.4 1.3E+02 0.0028 23.7 7.9 75 5-79 15-109 (585)
261 PRK07449 2-succinyl-5-enolpyru 49.3 1E+02 0.0022 24.0 6.9 75 5-79 11-105 (568)
262 PF12689 Acid_PPase: Acid Phos 49.1 44 0.00094 22.0 4.2 103 6-118 50-167 (169)
263 cd07038 TPP_PYR_PDC_IPDC_like 49.1 70 0.0015 20.6 6.2 72 8-79 2-92 (162)
264 cd08550 GlyDH-like Glycerol_de 49.0 1E+02 0.0022 22.5 7.1 30 51-81 76-110 (349)
265 TIGR02482 PFKA_ATP 6-phosphofr 48.9 30 0.00065 25.0 3.6 31 51-81 90-124 (301)
266 cd08187 BDH Butanol dehydrogen 48.7 99 0.0021 22.9 6.4 22 5-26 16-37 (382)
267 TIGR03609 S_layer_CsaB polysac 48.6 93 0.002 21.9 9.0 43 51-97 249-291 (298)
268 TIGR02699 archaeo_AfpA archaeo 48.4 63 0.0014 21.4 4.8 17 65-81 108-124 (174)
269 PRK14118 gpmA phosphoglyceromu 48.2 14 0.00031 25.2 1.8 22 54-75 176-197 (227)
270 PRK13055 putative lipid kinase 48.0 29 0.00063 25.2 3.5 30 51-80 58-93 (334)
271 PRK13463 phosphatase PhoE; Pro 47.9 15 0.00033 24.5 2.0 23 53-75 145-167 (203)
272 PRK08155 acetolactate synthase 47.5 1.4E+02 0.0029 23.4 7.3 75 5-79 15-109 (564)
273 PRK14117 gpmA phosphoglyceromu 47.4 15 0.00032 25.2 1.9 22 54-75 177-198 (230)
274 cd06270 PBP1_GalS_like Ligand 47.2 82 0.0018 21.3 5.6 67 4-79 16-85 (268)
275 TIGR00118 acolac_lg acetolacta 46.7 1.4E+02 0.003 23.3 7.4 74 6-79 4-97 (558)
276 PF09989 DUF2229: CoA enzyme a 46.4 54 0.0012 22.5 4.4 44 76-120 2-49 (221)
277 PRK11475 DNA-binding transcrip 46.3 90 0.0019 21.0 6.7 58 64-122 57-117 (207)
278 TIGR02638 lactal_redase lactal 45.9 56 0.0012 24.2 4.8 23 5-27 16-39 (379)
279 PRK08978 acetolactate synthase 45.8 1.3E+02 0.0027 23.5 6.8 74 6-79 4-96 (548)
280 PRK06882 acetolactate synthase 45.7 1.2E+02 0.0026 23.8 6.7 74 6-79 7-100 (574)
281 COG1052 LdhA Lactate dehydroge 45.6 1.2E+02 0.0026 22.2 7.0 52 7-62 159-210 (324)
282 PRK13337 putative lipid kinase 45.0 35 0.00075 24.3 3.5 31 51-81 56-92 (304)
283 TIGR03162 ribazole_cobC alpha- 45.0 17 0.00037 23.3 1.8 22 53-74 139-160 (177)
284 PTZ00122 phosphoglycerate muta 44.7 22 0.00048 25.5 2.5 22 54-75 235-256 (299)
285 PRK06466 acetolactate synthase 44.4 1.5E+02 0.0033 23.2 7.3 74 6-79 7-100 (574)
286 KOG2764|consensus 44.1 96 0.0021 21.8 5.2 51 10-61 25-76 (247)
287 PRK07525 sulfoacetaldehyde ace 44.0 1.3E+02 0.0028 23.8 6.7 75 5-79 8-101 (588)
288 cd01147 HemV-2 Metal binding p 44.0 85 0.0018 21.3 5.2 51 42-93 65-119 (262)
289 PRK15004 alpha-ribazole phosph 43.9 18 0.00038 24.0 1.8 23 53-75 143-165 (199)
290 TIGR00173 menD 2-succinyl-5-en 43.5 1.3E+02 0.0027 22.7 6.4 73 6-78 3-95 (432)
291 TIGR00045 glycerate kinase. Th 43.4 91 0.002 23.4 5.5 60 38-101 271-342 (375)
292 PRK13840 sucrose phosphorylase 43.0 33 0.00071 26.7 3.2 47 69-115 369-415 (495)
293 cd06291 PBP1_Qymf_like Ligand 42.9 65 0.0014 21.7 4.5 65 5-78 17-81 (265)
294 PRK03482 phosphoglycerate muta 42.8 21 0.00046 23.9 2.0 22 54-75 145-166 (215)
295 PF14359 DUF4406: Domain of un 42.8 46 0.00099 19.5 3.2 68 3-76 15-90 (92)
296 PRK07710 acetolactate synthase 42.7 1.3E+02 0.0027 23.7 6.4 73 6-79 19-111 (571)
297 PF00391 PEP-utilizers: PEP-ut 42.4 49 0.0011 18.5 3.2 43 36-78 13-59 (80)
298 PRK13397 3-deoxy-7-phosphohept 42.3 1.2E+02 0.0026 21.4 9.5 114 2-118 27-146 (250)
299 PRK10342 glycerate kinase I; P 42.3 1.1E+02 0.0023 23.1 5.7 60 38-101 272-343 (381)
300 PRK15454 ethanol dehydrogenase 42.1 81 0.0018 23.6 5.1 30 51-81 105-157 (395)
301 PRK03202 6-phosphofructokinase 42.0 44 0.00095 24.4 3.6 31 51-81 92-125 (320)
302 PRK01112 phosphoglyceromutase; 41.9 20 0.00044 24.5 1.8 24 52-75 174-197 (228)
303 CHL00188 hisH imidazole glycer 41.7 1.1E+02 0.0024 20.7 5.8 54 6-80 14-82 (210)
304 PRK09259 putative oxalyl-CoA d 41.6 1.3E+02 0.0028 23.6 6.4 74 6-79 13-105 (569)
305 PRK07979 acetolactate synthase 41.2 1.6E+02 0.0036 23.1 6.9 74 6-79 7-100 (574)
306 TIGR02113 coaC_strep phosphopa 41.2 1E+02 0.0023 20.3 5.8 49 51-99 75-146 (177)
307 PF00282 Pyridoxal_deC: Pyrido 41.1 1.4E+02 0.0031 22.1 6.3 68 52-120 103-191 (373)
308 PRK06276 acetolactate synthase 40.8 1.3E+02 0.0028 23.7 6.3 74 6-79 4-96 (586)
309 COG1618 Predicted nucleotide k 40.7 1.1E+02 0.0024 20.4 5.4 69 51-121 99-178 (179)
310 PTZ00123 phosphoglycerate muta 40.7 22 0.00047 24.5 1.8 21 54-74 164-184 (236)
311 cd08191 HHD 6-hydroxyhexanoate 40.5 94 0.002 23.1 5.3 30 51-81 78-130 (386)
312 PF02593 dTMP_synthase: Thymid 40.4 1.2E+02 0.0026 20.9 6.1 51 51-101 50-109 (217)
313 PF12496 BNIP2: Bcl2-/adenovir 40.4 13 0.00028 23.3 0.6 7 56-62 117-123 (127)
314 TIGR03457 sulphoacet_xsc sulfo 40.3 1.8E+02 0.0038 22.9 6.9 74 6-79 5-97 (579)
315 PF14871 GHL6: Hypothetical gl 40.2 47 0.001 20.8 3.1 26 1-26 41-66 (132)
316 PRK07282 acetolactate synthase 40.1 1.8E+02 0.004 22.8 7.4 74 6-79 13-106 (566)
317 PRK06457 pyruvate dehydrogenas 39.9 1.6E+02 0.0035 22.9 6.7 74 6-79 5-97 (549)
318 TIGR03254 oxalate_oxc oxalyl-C 39.7 1.7E+02 0.0036 22.9 6.7 75 5-79 5-98 (554)
319 PRK11269 glyoxylate carboligas 39.5 1.8E+02 0.0038 23.0 6.8 74 6-79 7-101 (591)
320 cd08194 Fe-ADH6 Iron-containin 39.2 94 0.002 23.0 5.1 30 51-81 79-131 (375)
321 PRK06965 acetolactate synthase 38.8 1.8E+02 0.004 22.9 6.8 74 6-79 24-117 (587)
322 cd01141 TroA_d Periplasmic bin 38.6 1.1E+02 0.0023 19.7 4.9 37 43-80 61-100 (186)
323 PRK13525 glutamine amidotransf 38.6 67 0.0015 21.3 3.9 28 51-78 37-78 (189)
324 PRK01295 phosphoglyceromutase; 38.5 24 0.00051 23.7 1.7 23 53-75 152-174 (206)
325 PRK06725 acetolactate synthase 38.5 1.6E+02 0.0034 23.2 6.4 74 6-79 18-110 (570)
326 PRK09932 glycerate kinase II; 38.4 1.5E+02 0.0032 22.4 5.9 61 37-101 271-343 (381)
327 TIGR02483 PFK_mixed phosphofru 38.4 56 0.0012 23.9 3.7 31 51-81 93-126 (324)
328 cd00763 Bacterial_PFK Phosphof 38.1 56 0.0012 23.8 3.7 32 50-81 90-124 (317)
329 PF13460 NAD_binding_10: NADH( 37.9 1.1E+02 0.0023 19.5 5.9 71 6-78 11-95 (183)
330 TIGR02418 acolac_catab acetola 37.8 1.7E+02 0.0037 22.7 6.5 73 7-79 3-94 (539)
331 PRK10669 putative cation:proto 37.6 2E+02 0.0043 22.5 10.3 108 7-122 430-551 (558)
332 TIGR01258 pgm_1 phosphoglycera 37.6 25 0.00054 24.4 1.8 23 53-75 175-197 (245)
333 PRK07313 phosphopantothenoylcy 37.6 1.2E+02 0.0026 20.0 6.6 70 51-120 76-180 (182)
334 COG1832 Predicted CoA-binding 37.5 1.1E+02 0.0024 19.6 4.8 83 6-101 32-126 (140)
335 PRK13181 hisH imidazole glycer 37.2 1.2E+02 0.0027 20.0 6.5 18 6-23 12-29 (199)
336 PF06345 Drf_DAD: DRF Autoregu 37.1 30 0.00065 12.9 1.4 11 63-73 4-14 (15)
337 COG0371 GldA Glycerol dehydrog 36.9 1.6E+02 0.0035 22.0 5.9 77 5-81 17-117 (360)
338 TIGR03393 indolpyr_decarb indo 36.8 1.6E+02 0.0034 22.9 6.1 74 6-79 4-96 (539)
339 PF11609 DUF3248: Protein of u 36.6 36 0.00079 18.3 1.9 32 13-46 1-32 (63)
340 PF14350 Beta_protein: Beta pr 36.5 55 0.0012 23.9 3.5 46 74-119 99-147 (347)
341 COG4394 Uncharacterized protei 36.3 1.7E+02 0.0038 21.5 7.0 74 3-79 188-283 (370)
342 PRK06546 pyruvate dehydrogenas 36.2 2.2E+02 0.0047 22.5 7.3 75 5-79 5-99 (578)
343 PF04558 tRNA_synt_1c_R1: Glut 35.9 45 0.00099 21.8 2.7 29 86-119 102-131 (164)
344 cd07766 DHQ_Fe-ADH Dehydroquin 35.8 55 0.0012 23.5 3.4 30 51-81 77-113 (332)
345 cd06305 PBP1_methylthioribose_ 35.6 1.2E+02 0.0027 20.4 5.0 65 4-78 16-86 (273)
346 PRK00861 putative lipid kinase 35.3 52 0.0011 23.3 3.2 31 51-81 56-90 (300)
347 PF06602 Myotub-related: Myotu 35.2 69 0.0015 23.7 3.8 38 87-124 223-261 (353)
348 cd08171 GlyDH-like2 Glycerol d 34.8 61 0.0013 23.6 3.5 30 51-81 77-111 (345)
349 PRK14115 gpmA phosphoglyceromu 34.6 32 0.00069 23.9 1.9 23 53-75 175-197 (247)
350 COG0622 Predicted phosphoester 34.4 1.4E+02 0.003 19.7 4.9 29 43-71 72-106 (172)
351 PRK07524 hypothetical protein; 34.4 2.1E+02 0.0046 22.2 6.5 74 5-78 4-96 (535)
352 PRK09107 acetolactate synthase 34.3 2.4E+02 0.0051 22.4 7.2 74 6-79 14-107 (595)
353 KOG2178|consensus 34.1 45 0.00098 25.2 2.6 18 51-68 167-184 (409)
354 PRK14120 gpmA phosphoglyceromu 33.8 31 0.00067 24.0 1.8 22 54-75 178-199 (249)
355 PRK14071 6-phosphofructokinase 33.6 69 0.0015 23.8 3.6 31 51-81 106-140 (360)
356 cd08549 G1PDH_related Glycerol 33.4 65 0.0014 23.4 3.4 30 51-81 79-113 (332)
357 COG0406 phoE Broad specificity 33.4 36 0.00079 22.5 2.0 22 54-75 148-169 (208)
358 PLN00011 cysteine synthase 33.3 1.9E+02 0.0041 20.9 8.7 52 53-105 69-125 (323)
359 PRK10624 L-1,2-propanediol oxi 33.0 1.3E+02 0.0028 22.3 5.0 23 5-27 17-40 (382)
360 PRK05858 hypothetical protein; 33.0 1.9E+02 0.0042 22.5 6.1 74 6-79 8-100 (542)
361 COG3563 KpsC Capsule polysacch 32.5 2.6E+02 0.0055 22.2 6.8 73 5-80 168-252 (671)
362 PRK08979 acetolactate synthase 32.4 2.5E+02 0.0054 22.1 7.0 74 6-79 7-100 (572)
363 PF04016 DUF364: Domain of unk 32.3 1.4E+02 0.0029 19.0 4.5 37 40-78 52-94 (147)
364 PLN02832 glutamine amidotransf 32.1 1.8E+02 0.004 20.4 6.5 28 51-78 37-78 (248)
365 PRK06555 pyrophosphate--fructo 32.0 63 0.0014 24.5 3.2 34 48-81 108-150 (403)
366 PRK13462 acid phosphatase; Pro 32.0 44 0.00096 22.4 2.2 22 53-74 141-162 (203)
367 cd06290 PBP1_LacI_like_9 Ligan 31.9 1.6E+02 0.0035 19.8 6.0 65 5-78 17-83 (265)
368 PRK08617 acetolactate synthase 31.7 1.9E+02 0.0042 22.5 5.9 74 6-79 8-100 (552)
369 PRK12361 hypothetical protein; 31.5 61 0.0013 25.3 3.2 31 51-81 296-330 (547)
370 PRK07586 hypothetical protein; 31.4 2.4E+02 0.0053 21.7 7.3 74 6-79 4-97 (514)
371 cd01149 HutB Hemin binding pro 31.2 1.6E+02 0.0035 19.8 4.9 50 43-93 50-102 (235)
372 PF11248 DUF3046: Protein of u 31.1 29 0.00063 19.0 1.0 23 53-75 24-46 (63)
373 cd07035 TPP_PYR_POX_like Pyrim 30.9 1.4E+02 0.003 18.6 11.3 73 8-80 2-93 (155)
374 cd06293 PBP1_LacI_like_11 Liga 30.8 1.7E+02 0.0037 19.7 5.5 67 4-79 16-85 (269)
375 COG0496 SurE Predicted acid ph 30.6 1E+02 0.0022 21.8 3.8 20 62-81 107-126 (252)
376 cd06279 PBP1_LacI_like_3 Ligan 30.6 1.8E+02 0.0039 19.9 6.7 62 4-78 21-85 (283)
377 PRK06048 acetolactate synthase 30.1 2.7E+02 0.0059 21.8 6.9 74 6-79 11-103 (561)
378 PRK09124 pyruvate dehydrogenas 30.0 2.7E+02 0.0059 21.8 7.2 75 5-79 5-99 (574)
379 PRK09423 gldA glycerol dehydro 30.0 79 0.0017 23.3 3.4 30 51-81 83-117 (366)
380 PRK13695 putative NTPase; Prov 29.6 1.6E+02 0.0034 18.9 5.7 54 65-118 119-172 (174)
381 PRK06456 acetolactate synthase 29.6 2.8E+02 0.006 21.8 7.8 74 6-79 5-101 (572)
382 PRK02492 deoxyhypusine synthas 29.5 1.2E+02 0.0026 22.6 4.2 30 46-77 80-112 (347)
383 cd01541 PBP1_AraR Ligand-bindi 29.5 1.8E+02 0.0039 19.6 5.3 66 4-78 16-89 (273)
384 cd06284 PBP1_LacI_like_6 Ligan 29.5 1.8E+02 0.0038 19.5 5.0 65 5-78 17-83 (267)
385 cd08170 GlyDH Glycerol dehydro 29.4 73 0.0016 23.2 3.2 30 51-81 76-110 (351)
386 TIGR02478 6PF1K_euk 6-phosphof 29.3 3E+02 0.0065 22.8 6.7 60 59-118 196-272 (745)
387 PF13478 XdhC_C: XdhC Rossmann 29.1 1.5E+02 0.0033 18.6 4.9 88 6-94 10-100 (136)
388 PF02481 DNA_processg_A: DNA r 29.1 84 0.0018 21.3 3.2 34 62-95 171-206 (212)
389 PF00365 PFK: Phosphofructokin 29.0 44 0.00096 23.8 1.9 31 51-81 91-125 (282)
390 PF00532 Peripla_BP_1: Peripla 28.6 1.7E+02 0.0037 20.4 4.8 66 5-80 19-87 (279)
391 PRK10736 hypothetical protein; 28.5 2E+02 0.0044 21.6 5.3 59 51-114 219-283 (374)
392 PRK06112 acetolactate synthase 28.3 80 0.0017 24.8 3.4 75 5-79 16-107 (578)
393 PRK07789 acetolactate synthase 28.3 3.1E+02 0.0066 21.8 7.5 74 6-79 34-127 (612)
394 PF06792 UPF0261: Uncharacteri 28.3 1.1E+02 0.0023 23.3 3.8 77 3-81 197-279 (403)
395 PF02826 2-Hacid_dh_C: D-isome 28.1 14 0.0003 24.2 -0.7 54 6-62 48-101 (178)
396 PRK10100 DNA-binding transcrip 28.0 2E+02 0.0042 19.5 6.2 51 71-123 80-130 (216)
397 PRK10586 putative oxidoreducta 27.9 90 0.0019 23.1 3.4 77 4-81 20-119 (362)
398 TIGR02518 EutH_ACDH acetaldehy 27.9 1.1E+02 0.0024 23.7 3.9 34 45-78 180-213 (488)
399 cd01542 PBP1_TreR_like Ligand- 27.9 1.8E+02 0.0039 19.4 4.7 66 4-78 16-84 (259)
400 COG2442 Uncharacterized conser 27.5 79 0.0017 18.0 2.4 46 69-118 19-69 (79)
401 PRK06186 hypothetical protein; 27.4 99 0.0021 21.5 3.3 34 51-85 52-94 (229)
402 COG2131 ComEB Deoxycytidylate 27.4 1.9E+02 0.0041 19.1 4.5 48 59-106 79-129 (164)
403 cd03130 GATase1_CobB Type 1 gl 27.3 1.9E+02 0.0042 19.2 6.2 18 7-24 14-31 (198)
404 cd03802 GT1_AviGT4_like This f 27.2 2.2E+02 0.0047 19.7 7.3 77 4-80 23-115 (335)
405 CHL00202 argB acetylglutamate 27.1 95 0.0021 22.1 3.3 68 5-75 10-79 (284)
406 KOG3285|consensus 27.1 1.4E+02 0.0029 20.1 3.7 49 54-102 8-56 (203)
407 COG1899 DYS1 Deoxyhypusine syn 27.0 2E+02 0.0043 21.1 4.8 48 46-98 76-124 (318)
408 COG0329 DapA Dihydrodipicolina 26.7 2.5E+02 0.0053 20.2 6.5 26 2-27 23-48 (299)
409 PHA02819 hypothetical protein; 26.7 57 0.0012 18.2 1.6 28 96-123 9-36 (71)
410 PRK13170 hisH imidazole glycer 26.6 1.4E+02 0.003 19.9 3.9 11 69-79 67-77 (196)
411 COG0118 HisH Glutamine amidotr 26.5 1.5E+02 0.0032 20.3 3.9 78 6-93 14-94 (204)
412 PRK14072 6-phosphofructokinase 26.4 97 0.0021 23.5 3.4 32 50-81 101-141 (416)
413 TIGR03702 lip_kinase_YegS lipi 26.4 85 0.0018 22.2 3.0 30 51-80 51-88 (293)
414 cd08177 MAR Maleylacetate redu 26.1 1.1E+02 0.0023 22.3 3.5 78 4-82 9-111 (337)
415 cd06318 PBP1_ABC_sugar_binding 26.0 2.2E+02 0.0047 19.3 5.4 65 5-78 17-86 (282)
416 PRK07574 formate dehydrogenase 25.9 2.5E+02 0.0053 21.2 5.4 53 7-63 205-259 (385)
417 PLN02980 2-oxoglutarate decarb 25.8 5E+02 0.011 23.8 7.8 74 5-78 303-396 (1655)
418 PF01488 Shikimate_DH: Shikima 25.7 1.4E+02 0.003 18.5 3.5 57 5-63 23-86 (135)
419 cd06322 PBP1_ABC_sugar_binding 25.4 2.2E+02 0.0047 19.1 5.1 67 4-79 16-87 (267)
420 PLN02884 6-phosphofructokinase 25.3 1.1E+02 0.0024 23.3 3.5 31 51-81 142-181 (411)
421 PRK13152 hisH imidazole glycer 25.3 1.4E+02 0.0029 19.9 3.7 18 70-88 71-88 (201)
422 PF00763 THF_DHG_CYH: Tetrahyd 25.2 1.7E+02 0.0036 17.8 5.5 52 72-123 28-88 (117)
423 PF10120 Aldolase_2: Putative 25.1 82 0.0018 20.7 2.5 63 7-78 92-155 (170)
424 PF01113 DapB_N: Dihydrodipico 25.0 1.7E+02 0.0037 17.8 8.2 91 6-101 13-121 (124)
425 PRK06029 3-octaprenyl-4-hydrox 25.0 1.3E+02 0.0028 20.1 3.5 50 52-101 78-148 (185)
426 cd06309 PBP1_YtfQ_like Peripla 24.8 2.2E+02 0.0047 19.3 4.8 66 4-78 16-86 (273)
427 cd03132 GATase1_catalase Type 24.7 1.8E+02 0.0038 17.8 8.1 73 5-78 16-101 (142)
428 COG1058 CinA Predicted nucleot 24.7 65 0.0014 22.8 2.1 29 51-79 59-94 (255)
429 PF12694 MoCo_carrier: Putativ 24.6 2E+02 0.0044 18.5 4.1 47 52-98 65-118 (145)
430 PLN02496 probable phosphopanto 24.6 1.4E+02 0.003 20.5 3.6 74 44-120 90-199 (209)
431 PF01207 Dus: Dihydrouridine s 24.5 1.9E+02 0.0041 20.9 4.5 25 4-28 138-162 (309)
432 TIGR02320 PEP_mutase phosphoen 24.4 2.7E+02 0.0059 20.0 7.4 98 2-103 133-241 (285)
433 TIGR00521 coaBC_dfp phosphopan 24.3 3.1E+02 0.0068 20.6 6.4 58 5-63 213-276 (390)
434 cd00363 PFK Phosphofructokinas 24.2 1.2E+02 0.0027 22.2 3.5 32 50-81 90-130 (338)
435 PF00072 Response_reg: Respons 24.2 1.5E+02 0.0032 16.8 5.2 43 71-115 70-112 (112)
436 COG2022 ThiG Uncharacterized e 23.9 91 0.002 22.0 2.6 31 71-101 127-157 (262)
437 cd01451 vWA_Magnesium_chelatas 23.9 2.1E+02 0.0045 18.4 4.9 46 70-115 130-177 (178)
438 cd06315 PBP1_ABC_sugar_binding 23.9 2.4E+02 0.0052 19.3 4.9 66 4-78 17-87 (280)
439 COG0107 HisF Imidazoleglycerol 23.8 1.6E+02 0.0034 20.8 3.7 20 82-101 155-174 (256)
440 PRK07418 acetolactate synthase 23.7 3.8E+02 0.0082 21.3 7.5 72 6-78 22-117 (616)
441 CHL00162 thiG thiamin biosynth 23.4 98 0.0021 22.0 2.7 30 72-101 135-164 (267)
442 COG2230 Cfa Cyclopropane fatty 23.4 1.3E+02 0.0029 21.6 3.4 47 51-97 72-121 (283)
443 cd01575 PBP1_GntR Ligand-bindi 23.2 2.4E+02 0.0052 18.8 5.8 66 4-78 16-84 (268)
444 cd01146 FhuD Fe3+-siderophore 23.1 2.5E+02 0.0054 19.1 5.7 51 42-93 56-107 (256)
445 PRK07238 bifunctional RNase H/ 23.1 66 0.0014 23.7 2.0 23 53-75 314-336 (372)
446 PF00781 DAGK_cat: Diacylglyce 23.1 68 0.0015 19.5 1.8 29 53-81 55-91 (130)
447 PRK12474 hypothetical protein; 23.1 3.6E+02 0.0078 20.9 7.3 74 6-79 8-101 (518)
448 TIGR01890 N-Ac-Glu-synth amino 22.9 1.7E+02 0.0038 22.0 4.2 66 6-75 5-72 (429)
449 PLN02958 diacylglycerol kinase 22.8 1.2E+02 0.0026 23.5 3.3 31 51-81 167-208 (481)
450 TIGR00040 yfcE phosphoesterase 22.8 1.2E+02 0.0026 19.0 3.0 11 51-61 77-87 (158)
451 cd04237 AAK_NAGS-ABP AAK_NAGS- 22.8 1.3E+02 0.0028 21.4 3.3 66 6-75 6-73 (280)
452 PF03979 Sigma70_r1_1: Sigma-7 22.7 81 0.0018 17.8 1.9 22 1-22 36-57 (82)
453 PRK06487 glycerate dehydrogena 22.7 2.5E+02 0.0054 20.3 4.8 47 7-62 161-207 (317)
454 PTZ00075 Adenosylhomocysteinas 22.6 1.3E+02 0.0029 23.3 3.5 31 42-74 301-333 (476)
455 KOG2802|consensus 22.6 43 0.00092 25.3 0.9 66 21-91 251-317 (503)
456 COG0133 TrpB Tryptophan syntha 22.5 3.2E+02 0.0069 20.5 5.2 59 63-121 118-181 (396)
457 cd00532 MGS-like MGS-like doma 22.5 1.8E+02 0.004 17.3 4.2 23 3-25 11-33 (112)
458 cd06285 PBP1_LacI_like_7 Ligan 22.4 2.5E+02 0.0054 18.8 5.2 21 4-24 16-36 (265)
459 PF09884 DUF2111: Uncharacteri 22.2 41 0.00088 19.5 0.6 19 64-82 50-68 (84)
460 cd07067 HP_PGM_like Histidine 22.0 80 0.0017 19.5 2.0 24 52-75 100-123 (153)
461 COG1407 Predicted ICC-like pho 22.0 2.9E+02 0.0063 19.4 5.0 24 3-28 85-108 (235)
462 cd06313 PBP1_ABC_sugar_binding 22.0 2.7E+02 0.0058 19.0 5.0 64 6-78 18-86 (272)
463 PRK08327 acetolactate synthase 22.0 4E+02 0.0087 21.0 6.6 74 6-79 10-108 (569)
464 PF11238 DUF3039: Protein of u 21.9 76 0.0016 17.0 1.5 18 61-78 13-30 (58)
465 PLN02871 UDP-sulfoquinovose:DA 21.9 3.6E+02 0.0077 20.4 8.8 75 4-78 78-174 (465)
466 PRK00805 putative deoxyhypusin 21.8 2E+02 0.0044 21.2 4.2 30 46-77 68-99 (329)
467 COG1597 LCB5 Sphingosine kinas 21.8 81 0.0018 22.7 2.2 31 51-81 57-92 (301)
468 COG0311 PDX2 Predicted glutami 21.8 1.6E+02 0.0035 19.9 3.4 28 51-78 37-78 (194)
469 PRK14004 hisH imidazole glycer 21.8 1.6E+02 0.0035 19.9 3.5 13 67-79 67-79 (210)
470 PRK10703 DNA-binding transcrip 21.7 2.3E+02 0.005 20.0 4.5 28 51-78 114-145 (341)
471 PRK10834 vancomycin high tempe 21.6 2.1E+02 0.0045 20.1 4.0 47 51-97 112-163 (239)
472 PRK11253 ldcA L,D-carboxypepti 21.5 3.2E+02 0.007 19.7 5.2 15 5-19 18-32 (305)
473 cd06281 PBP1_LacI_like_5 Ligan 21.4 2.7E+02 0.0058 18.8 5.3 66 4-78 16-85 (269)
474 PRK08410 2-hydroxyacid dehydro 21.3 3.2E+02 0.007 19.7 5.2 48 7-61 158-205 (311)
475 PRK02301 putative deoxyhypusin 21.2 2.1E+02 0.0046 21.0 4.1 48 46-99 79-128 (316)
476 cd08197 DOIS 2-deoxy-scyllo-in 21.1 2.8E+02 0.0061 20.5 4.9 30 51-81 80-119 (355)
477 PF12894 Apc4_WD40: Anaphase-p 21.1 45 0.00098 16.9 0.6 19 32-50 10-28 (47)
478 cd00764 Eukaryotic_PFK Phospho 20.9 1.5E+02 0.0032 24.6 3.6 32 52-83 478-519 (762)
479 PF02016 Peptidase_S66: LD-car 20.9 1E+02 0.0023 21.9 2.5 16 5-20 15-30 (284)
480 cd08175 G1PDH Glycerol-1-phosp 20.8 1.4E+02 0.003 21.8 3.2 29 52-81 80-113 (348)
481 COG0111 SerA Phosphoglycerate 20.8 2.8E+02 0.006 20.3 4.7 51 7-60 155-205 (324)
482 COG0547 TrpD Anthranilate phos 20.7 2.1E+02 0.0046 21.2 4.1 27 2-28 198-225 (338)
483 TIGR02667 moaB_proteo molybden 20.7 69 0.0015 20.7 1.5 13 51-63 62-74 (163)
484 PRK08811 uroporphyrinogen-III 20.6 2.7E+02 0.0059 19.5 4.6 47 71-122 218-264 (266)
485 PRK00770 deoxyhypusine synthas 20.5 2.5E+02 0.0053 21.3 4.5 32 46-78 74-106 (384)
486 TIGR03492 conserved hypothetic 20.4 1.3E+02 0.0028 22.4 3.1 27 52-78 93-119 (396)
487 cd08174 G1PDH-like Glycerol-1- 20.3 1.6E+02 0.0034 21.3 3.4 29 52-81 75-108 (331)
488 PRK00048 dihydrodipicolinate r 20.2 3.1E+02 0.0068 19.1 11.9 94 7-103 15-116 (257)
489 PF01497 Peripla_BP_2: Peripla 20.2 2.7E+02 0.0059 18.4 4.6 40 42-82 51-93 (238)
490 cd01423 MGS_CPS_I_III Methylgl 20.2 2E+02 0.0044 17.1 3.5 22 4-25 13-34 (116)
491 PRK09982 universal stress prot 20.2 1.8E+02 0.0039 17.8 3.3 7 18-24 34-40 (142)
492 COG0673 MviM Predicted dehydro 20.2 3.3E+02 0.0071 19.3 7.7 94 8-101 18-124 (342)
493 PF07131 DUF1382: Protein of u 20.2 1.1E+02 0.0024 16.5 1.9 16 7-22 13-28 (61)
494 COG4080 SpoU rRNA Methylase fa 20.1 1.2E+02 0.0027 19.4 2.4 26 55-80 31-64 (147)
495 PRK13932 stationary phase surv 20.0 1.1E+02 0.0023 21.7 2.4 18 63-80 116-133 (257)
496 cd06277 PBP1_LacI_like_1 Ligan 20.0 2.9E+02 0.0062 18.6 5.6 65 5-78 20-86 (268)
No 1
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.97 E-value=1.6e-31 Score=199.37 Aligned_cols=124 Identities=41% Similarity=0.744 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecc
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPF 80 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~ 80 (124)
+|.+..+++++++++++.+|||++++......++|+++.+|+||.++|.|+++++||||||++|+.||+++|+|+|++|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~ 369 (500)
T PF00201_consen 290 MPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPL 369 (500)
T ss_dssp -HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GC
T ss_pred hHHHHHHHHHHHHhhCCCcccccccccccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCC
Confidence 35667899999999999999999988666667899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCCC
Q psy10186 81 YGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 81 ~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~r 124 (124)
++||..||.++++.|+|+.++.++++.+++.++|+++++|++||
T Consensus 370 ~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~ 413 (500)
T PF00201_consen 370 FGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYK 413 (500)
T ss_dssp STTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHH
T ss_pred cccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999998874
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.97 E-value=2.5e-30 Score=193.25 Aligned_cols=124 Identities=35% Similarity=0.694 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCCC-CCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeec
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSIE-NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVP 79 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P 79 (124)
+|.+.++.+++++++.+++|||.+++.... ..|+|+.+.+|+||.++|.|+++++||||||.||+.||+++|+|+|++|
T Consensus 312 ~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP 391 (507)
T PHA03392 312 MDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLP 391 (507)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECC
Confidence 367899999999999999999999875543 6789999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCCC
Q psy10186 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 80 ~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~r 124 (124)
.+.||..||+++++.|+|+.++..+++.++|.++++++++||+||
T Consensus 392 ~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~ 436 (507)
T PHA03392 392 MMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYR 436 (507)
T ss_pred CCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999988999999999999999999875
No 3
>PLN03004 UDP-glycosyltransferase
Probab=99.95 E-value=3.7e-27 Score=173.80 Aligned_cols=124 Identities=23% Similarity=0.423 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC--------CCC-CC---------CcEEEeeccChHHhhcCCCcceEEecCCh
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS--------IEN-LP---------GNVHIRKWIPQQDVLAHPNCRLFISHGGV 62 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~--------~~~-~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~gG~ 62 (124)
++.+.+++++.+|+.++.+|||+++... ... .| .|+.+.+|+||.++|.|+++.+||||||+
T Consensus 283 ~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~ 362 (451)
T PLN03004 283 FSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGW 362 (451)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcc
Confidence 5789999999999999999999998531 111 33 68888999999999999999999999999
Q ss_pred hhHHHHHHhCCCeeeecccccHHHHHHHHHH-cCceeEecCC---CCCHHHHHHHHHHHhcCCCCC
Q psy10186 63 NSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSYF---NITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 63 ~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~~~---~~~~~~l~~~l~~ll~~~~~r 124 (124)
||++|++++|+|+|++|.+.||..||+++++ .|+|+.+..+ .+++++|.+++++++++++||
T Consensus 363 nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 363 NSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred hHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999986 6999999743 469999999999999887765
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=99.95 E-value=6.2e-27 Score=173.37 Aligned_cols=121 Identities=22% Similarity=0.382 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC-C-----CCCCCc---------EEEeeccChHHhhcCCCcceEEecCChhhH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS-I-----ENLPGN---------VHIRKWIPQQDVLAHPNCRLFISHGGVNSA 65 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~-~-----~~~~~~---------v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~ 65 (124)
|+.+.+.+++.+|+.++.+|||++.+.. . ...|++ +.+.+|+||.++|.|+++.+||||||+||+
T Consensus 291 l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~ 370 (472)
T PLN02670 291 LRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSV 370 (472)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchH
Confidence 5789999999999999999999997521 0 112332 667799999999999999999999999999
Q ss_pred HHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCC----CCCHHHHHHHHHHHhcCC
Q psy10186 66 LEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYF----NITLESIAWATSIVLNNP 121 (124)
Q Consensus 66 ~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~----~~~~~~l~~~l~~ll~~~ 121 (124)
+|++++|+|+|++|.+.||..||+++++.|+|+.+... .++++++.+++++++.++
T Consensus 371 ~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 371 VEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred HHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999998642 378999999999999775
No 5
>PLN02562 UDP-glycosyltransferase
Probab=99.95 E-value=7.3e-27 Score=172.52 Aligned_cols=122 Identities=23% Similarity=0.384 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC---CC-----CCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhC
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS---IE-----NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYG 72 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~---~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g 72 (124)
++.+.+.+++.+|+.+|.+|||+++... .. ..++|+.+.+|+||.++|.|+++.+||||||+||++|++++|
T Consensus 287 ~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~G 366 (448)
T PLN02562 287 IGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQ 366 (448)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcC
Confidence 4778999999999999999999986421 21 145789999999999999999999999999999999999999
Q ss_pred CCeeeecccccHHHHHHHHHHc-CceeEecCCCCCHHHHHHHHHHHhcCCCCC
Q psy10186 73 IPIIGVPFYGDQLSHVRHIVDL-GAGVELSYFNITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 73 ~P~l~~P~~~~q~~~a~~~~~~-g~g~~~~~~~~~~~~l~~~l~~ll~~~~~r 124 (124)
+|+|++|.+.||+.||+++++. |+|+.+. +++.+++.+++++++++++||
T Consensus 367 vP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 367 KRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred CCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999874 9988774 578999999999999887765
No 6
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.95 E-value=3.1e-27 Score=175.92 Aligned_cols=124 Identities=27% Similarity=0.455 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC------------------CCC----CCCcEEEeeccChHHhhcCCCcceEEe
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS------------------IEN----LPGNVHIRKWIPQQDVLAHPNCRLFIS 58 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~------------------~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~ 58 (124)
++.+.+.+++.+|+.++++|||++++.. ..+ ..+|+.+.+|+||.++|.|+++++|||
T Consensus 287 ~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~Fvt 366 (481)
T PLN02554 287 FSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVT 366 (481)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccc
Confidence 4678999999999999999999987521 011 345778889999999999999999999
Q ss_pred cCChhhHHHHHHhCCCeeeecccccHHHHHH-HHHHcCceeEecC-----------CCCCHHHHHHHHHHHhc-CCCCC
Q psy10186 59 HGGVNSALEAIHYGIPIIGVPFYGDQLSHVR-HIVDLGAGVELSY-----------FNITLESIAWATSIVLN-NPRRY 124 (124)
Q Consensus 59 ~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~-~~~~~g~g~~~~~-----------~~~~~~~l~~~l~~ll~-~~~~r 124 (124)
|||+||++|++++|+|+|++|.++||+.||+ .++..|+|+.+.. ..++++++.++|+++++ +++||
T Consensus 367 H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r 445 (481)
T PLN02554 367 HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVR 445 (481)
T ss_pred cCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999995 5788899998853 35799999999999996 56554
No 7
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.94 E-value=2.5e-26 Score=169.68 Aligned_cols=120 Identities=28% Similarity=0.425 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC---------CC-----CCCCcEEEeeccChHHhhcCCCcceEEecCChhhHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS---------IE-----NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~---------~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ 66 (124)
++.+.+.+++.+|+.++.+|+|+++... .. +.++|..+.+|+||.++|.|+++++||||||+||++
T Consensus 277 ~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~ 356 (451)
T PLN02410 277 MEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTL 356 (451)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHH
Confidence 4788999999999999999999987421 11 145778999999999999999999999999999999
Q ss_pred HHHHhCCCeeeecccccHHHHHHHHHHc-CceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRHIVDL-GAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~~~~~-g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
||+++|+|+|++|.+.||+.||+++++. |+|+.+. ..++++++++++++++.++
T Consensus 357 Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 357 ESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred HHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999887 9999987 6789999999999999776
No 8
>PLN02207 UDP-glycosyltransferase
Probab=99.94 E-value=2.5e-26 Score=170.01 Aligned_cols=119 Identities=27% Similarity=0.466 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCC-----------CCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSI-----------ENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAI 69 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~ 69 (124)
++.+.+++++.+|+.++++|||+++.... +..+++..+.+|+||.++|.|+++++||||||+||++|++
T Consensus 288 ~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai 367 (468)
T PLN02207 288 LRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESL 367 (468)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHH
Confidence 57789999999999999999999985221 1145778889999999999999999999999999999999
Q ss_pred HhCCCeeeecccccHHHHHHHHHH-cCceeEec------C-CCCCHHHHHHHHHHHhc
Q psy10186 70 HYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELS------Y-FNITLESIAWATSIVLN 119 (124)
Q Consensus 70 ~~g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~------~-~~~~~~~l~~~l~~ll~ 119 (124)
++|+|+|++|.+.||+.||+++++ .|+|+.+. . +.+++++|.++|+++++
T Consensus 368 ~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 368 WFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred HcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 999999999999999999998877 79998663 1 23589999999999996
No 9
>PLN02210 UDP-glucosyl transferase
Probab=99.94 E-value=8.5e-26 Score=167.14 Aligned_cols=122 Identities=25% Similarity=0.497 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCC-------CC-C-CCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSI-------EN-L-PGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY 71 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~-------~~-~-~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~ 71 (124)
++.+.+++++.+|+..+++|||+++.... .+ . +++..+.+|+||.++|.|+++++||||||+||++|++++
T Consensus 282 ~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~ 361 (456)
T PLN02210 282 SLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVA 361 (456)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHc
Confidence 36788999999999999999999875321 11 1 356678899999999999989999999999999999999
Q ss_pred CCCeeeecccccHHHHHHHHHH-cCceeEecCC----CCCHHHHHHHHHHHhcCCC
Q psy10186 72 GIPIIGVPFYGDQLSHVRHIVD-LGAGVELSYF----NITLESIAWATSIVLNNPR 122 (124)
Q Consensus 72 g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~~~----~~~~~~l~~~l~~ll~~~~ 122 (124)
|+|+|++|.+.||..||+++++ .|+|+.+..+ .+++++|.+++++++.+++
T Consensus 362 GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 362 GVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred CCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 9999999999999999999998 7999988632 5799999999999997764
No 10
>PLN02555 limonoid glucosyltransferase
Probab=99.94 E-value=1.4e-25 Score=166.53 Aligned_cols=121 Identities=29% Similarity=0.485 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCC----C----------CCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGD----S----------IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~----~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ 66 (124)
++.+.+.+++.+|+..+++|||+++.. . ..+.++|+.+.+|+||.++|.|+++++||||||+||++
T Consensus 290 ~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~ 369 (480)
T PLN02555 290 LKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTM 369 (480)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHH
Confidence 467899999999999999999998631 0 11235688899999999999999999999999999999
Q ss_pred HHHHhCCCeeeecccccHHHHHHHHHHc-CceeEec-----CCCCCHHHHHHHHHHHhcCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRHIVDL-GAGVELS-----YFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~~~~~-g~g~~~~-----~~~~~~~~l~~~l~~ll~~~ 121 (124)
||+++|+|+|++|.+.||..|++++++. |+|+.+. ...++++++.++++++++++
T Consensus 370 Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 370 EALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE 430 (480)
T ss_pred HHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999987 9999994 33578999999999999764
No 11
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.93 E-value=6.1e-26 Score=168.75 Aligned_cols=121 Identities=29% Similarity=0.480 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCC------CCCCCc--------EEEeeccChHHhhcCCCcceEEecCChhhHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSI------ENLPGN--------VHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~------~~~~~~--------v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ 66 (124)
++.+.+.+++.+|+.++++|||+++.... ...|++ ..+.+|+||.++|.|+++++||||||+||++
T Consensus 293 ~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~ 372 (475)
T PLN02167 293 LPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVL 372 (475)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHH
Confidence 46788999999999999999999875311 113333 4678999999999999999999999999999
Q ss_pred HHHHhCCCeeeecccccHHHHHHH-HHHcCceeEecC-------CCCCHHHHHHHHHHHhcCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRH-IVDLGAGVELSY-------FNITLESIAWATSIVLNNP 121 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~-~~~~g~g~~~~~-------~~~~~~~l~~~l~~ll~~~ 121 (124)
|++++|+|+|++|.+.||+.||++ ++..|+|+.+.. ..++++++.+++++++.++
T Consensus 373 Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 373 ESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred HHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC
Confidence 999999999999999999999976 677899998853 2468999999999999754
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.93 E-value=2.2e-25 Score=165.42 Aligned_cols=121 Identities=25% Similarity=0.380 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCC------------------C--CCCCCC---------cEEEeeccChHHhhcCC
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGD------------------S--IENLPG---------NVHIRKWIPQQDVLAHP 51 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~------------------~--~~~~~~---------~v~~~~~~~~~~~l~~~ 51 (124)
|+.+.+.+++.+|+.++++|||++.+. + ....|. ++.+.+|+||.++|.|+
T Consensus 276 l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~ 355 (481)
T PLN02992 276 LSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQ 355 (481)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCc
Confidence 578999999999999999999999531 0 011333 47888999999999999
Q ss_pred CcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHHH-HcCceeEecCC--CCCHHHHHHHHHHHhcCC
Q psy10186 52 NCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIV-DLGAGVELSYF--NITLESIAWATSIVLNNP 121 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~-~~g~g~~~~~~--~~~~~~l~~~l~~ll~~~ 121 (124)
++.+||||||+||++|++++|+|+|++|.+.||+.||++++ ++|+|+.+... .++.+++.+++++++.++
T Consensus 356 ~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 356 AVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred ccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999995 88999999753 489999999999999765
No 13
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.93 E-value=2.2e-25 Score=162.98 Aligned_cols=119 Identities=27% Similarity=0.487 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCC--CCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeeccc
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDS--IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY 81 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~ 81 (124)
++++.+++++.+++.++|+..|+.. ....|.|+.+.+|+|+.+++ ++||+||||||+||++||+++|+|+|++|..
T Consensus 252 ~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p~~~~l--~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~ 329 (406)
T COG1819 252 ELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVPQLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIPDG 329 (406)
T ss_pred HHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCCHHHHh--hhcCEEEecCCcchHHHHHHcCCCEEEecCC
Confidence 6788999999999999999988733 45688999999999999999 8999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCCC
Q psy10186 82 GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 82 ~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~r 124 (124)
.||..||.++++.|+|..+..+.++.+.+.++|++++++++||
T Consensus 330 ~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~ 372 (406)
T COG1819 330 ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYR 372 (406)
T ss_pred cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999998999999999999999988764
No 14
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.93 E-value=2.7e-25 Score=164.14 Aligned_cols=122 Identities=23% Similarity=0.384 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC----------------CC----CCCCcEEEeeccChHHhhcCCCcceEEecC
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS----------------IE----NLPGNVHIRKWIPQQDVLAHPNCRLFISHG 60 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~----------------~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~g 60 (124)
++.+.+++++.+|+.++.+|||+++... .. ..+++..+.+|+||.++|.|+++.+|||||
T Consensus 274 l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~ 353 (455)
T PLN02152 274 LSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHC 353 (455)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeC
Confidence 5789999999999999999999987520 01 145677889999999999999999999999
Q ss_pred ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHc-CceeEec--CC-CCCHHHHHHHHHHHhcCCC
Q psy10186 61 GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDL-GAGVELS--YF-NITLESIAWATSIVLNNPR 122 (124)
Q Consensus 61 G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~-g~g~~~~--~~-~~~~~~l~~~l~~ll~~~~ 122 (124)
|+||++|++++|+|+|++|.+.||..||+++++. |+|+.+. .+ .+++++|.+++++++++++
T Consensus 354 G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 354 GWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred CcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999984 6666553 23 3589999999999997654
No 15
>PLN00164 glucosyltransferase; Provisional
Probab=99.93 E-value=6.3e-25 Score=163.39 Aligned_cols=122 Identities=24% Similarity=0.459 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCC-----------C-CCCC---------cEEEeeccChHHhhcCCCcceEEec
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSI-----------E-NLPG---------NVHIRKWIPQQDVLAHPNCRLFISH 59 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~-----------~-~~~~---------~v~~~~~~~~~~~l~~~~~d~~i~~ 59 (124)
++.+.+.+++.+|+.++.+|||+++.... . ..|+ ++.+.+|+||.++|.|+.+.+||||
T Consensus 285 ~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH 364 (480)
T PLN00164 285 FDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTH 364 (480)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEee
Confidence 46788999999999999999999874210 0 0222 3666799999999999999999999
Q ss_pred CChhhHHHHHHhCCCeeeecccccHHHHHHHHHH-cCceeEecCC-----CCCHHHHHHHHHHHhcCCC
Q psy10186 60 GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSYF-----NITLESIAWATSIVLNNPR 122 (124)
Q Consensus 60 gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~~~-----~~~~~~l~~~l~~ll~~~~ 122 (124)
||+||++|++++|+|+|++|.++||+.||+++++ .|+|+.+..+ .++++++.++|++++.+++
T Consensus 365 ~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~ 433 (480)
T PLN00164 365 CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGE 433 (480)
T ss_pred cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999998854 7999988522 3689999999999998764
No 16
>PLN02208 glycosyltransferase family protein
Probab=99.93 E-value=7.4e-25 Score=161.53 Aligned_cols=122 Identities=25% Similarity=0.376 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCC----C-CCCCC---------CcEEEeeccChHHhhcCCCcceEEecCChhhHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGD----S-IENLP---------GNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~----~-~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ 66 (124)
++.+.+.+++.+++..+..|+|+...+ . ....| .|+.+.+|+||.++|.|+++.+||||||+||++
T Consensus 264 l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~ 343 (442)
T PLN02208 264 LEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIW 343 (442)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHH
Confidence 467889999998877888888877643 1 11233 578888999999999999999999999999999
Q ss_pred HHHHhCCCeeeecccccHHHHHHHHHH-cCceeEecCCC---CCHHHHHHHHHHHhcCCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSYFN---ITLESIAWATSIVLNNPR 122 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~~~~---~~~~~l~~~l~~ll~~~~ 122 (124)
|++++|+|+|++|.+.||..||+++++ .|+|+.+..++ ++++++.+++++++++++
T Consensus 344 Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~ 403 (442)
T PLN02208 344 ESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDS 403 (442)
T ss_pred HHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCc
Confidence 999999999999999999999998877 79999997544 899999999999997753
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.93 E-value=5.2e-25 Score=164.09 Aligned_cols=121 Identities=21% Similarity=0.344 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC--------CCC------CCCcEEEeeccChHHhhcCCCcceEEecCChhhHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS--------IEN------LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~--------~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ 66 (124)
++.+.+.+++++|+..+++|||+++... ..+ .+.|+.+.+|+||.++|.|+++++||||||+||++
T Consensus 298 ~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~ 377 (482)
T PLN03007 298 FKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLL 377 (482)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHH
Confidence 3577899999999999999999988531 111 25578889999999999999999999999999999
Q ss_pred HHHHhCCCeeeecccccHHHHHHHHHH---cCceeEe------cCCCCCHHHHHHHHHHHhcCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRHIVD---LGAGVEL------SYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~~~~---~g~g~~~------~~~~~~~~~l~~~l~~ll~~~ 121 (124)
||+++|+|+|++|.+.||+.||+++++ .|+++.. ..+.+++++|.+++++++.++
T Consensus 378 Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 378 EGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred HHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc
Confidence 999999999999999999999998874 3444422 234579999999999999876
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.92 E-value=1.1e-24 Score=161.62 Aligned_cols=121 Identities=24% Similarity=0.376 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCC--CCCC-CCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeee
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGD--SIEN-LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIG 77 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~ 77 (124)
++.+.+.+++++|++.+++|||++..+ ...+ .++|+.+.+|+||.++|.|+++++||||||+||++||+++|+|+|+
T Consensus 287 ~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~ 366 (459)
T PLN02448 287 VSSAQMDEIAAGLRDSGVRFLWVARGEASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLT 366 (459)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEcCchhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEe
Confidence 356789999999999999999987643 1222 2358888999999999999999999999999999999999999999
Q ss_pred ecccccHHHHHHHHHH-cCceeEecC-----CCCCHHHHHHHHHHHhcCC
Q psy10186 78 VPFYGDQLSHVRHIVD-LGAGVELSY-----FNITLESIAWATSIVLNNP 121 (124)
Q Consensus 78 ~P~~~~q~~~a~~~~~-~g~g~~~~~-----~~~~~~~l~~~l~~ll~~~ 121 (124)
+|.+.||+.||+++++ .|+|+.+.. ..+++++|+++++++++++
T Consensus 367 ~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 367 FPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred ccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 9999999999999998 488887742 2468999999999999864
No 19
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.92 E-value=5.8e-25 Score=163.40 Aligned_cols=123 Identities=24% Similarity=0.452 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC-----CCCCC---------CcEEEeeccChHHhhcCCCcceEEecCChhhHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS-----IENLP---------GNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~-----~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ 66 (124)
++.+.+.+++++|++++++|||+++... ....| .++.+.+|+||.++|.|+++++||||||+||++
T Consensus 296 ~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~ 375 (477)
T PLN02863 296 LTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVL 375 (477)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHH
Confidence 4678899999999999999999997421 11122 357778999999999999999999999999999
Q ss_pred HHHHhCCCeeeecccccHHHHHHHHHH-cCceeEecC---CCCCHHHHHHHHHHHh-cCCCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSY---FNITLESIAWATSIVL-NNPRR 123 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~~---~~~~~~~l~~~l~~ll-~~~~~ 123 (124)
||+++|+|+|++|.+.||+.||+++++ .|+|+.+.. ...+.+++.+++++++ ++++|
T Consensus 376 Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~ 437 (477)
T PLN02863 376 EGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVE 437 (477)
T ss_pred HHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHH
Confidence 999999999999999999999999765 699998853 2358999999999988 44443
No 20
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.92 E-value=1.7e-24 Score=159.75 Aligned_cols=120 Identities=23% Similarity=0.452 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC---CC-C----C-CCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS---IE-N----L-PGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY 71 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~---~~-~----~-~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~ 71 (124)
++.+.+.+++.+| .+.+|+|++..+. .. + . ++|+.+.+|+||.++|.|+++.+||||||+||++|++++
T Consensus 277 ~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~ 354 (449)
T PLN02173 277 LSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSL 354 (449)
T ss_pred CCHHHHHHHHHHh--cCCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHc
Confidence 4778999999999 6678999997421 11 1 2 577899999999999999999999999999999999999
Q ss_pred CCCeeeecccccHHHHHHHHHHc-CceeEecCC----CCCHHHHHHHHHHHhcCCC
Q psy10186 72 GIPIIGVPFYGDQLSHVRHIVDL-GAGVELSYF----NITLESIAWATSIVLNNPR 122 (124)
Q Consensus 72 g~P~l~~P~~~~q~~~a~~~~~~-g~g~~~~~~----~~~~~~l~~~l~~ll~~~~ 122 (124)
|+|+|++|.+.||..||+++++. |+|+.+..+ .++++++.+++++++.+++
T Consensus 355 GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~ 410 (449)
T PLN02173 355 GVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK 410 (449)
T ss_pred CCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh
Confidence 99999999999999999999986 999887532 2589999999999997764
No 21
>PLN03015 UDP-glucosyl transferase
Probab=99.92 E-value=4.9e-24 Score=157.70 Aligned_cols=119 Identities=24% Similarity=0.451 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCC------------CCC-CCCCc---------EEEeeccChHHhhcCCCcceEEe
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGD------------SIE-NLPGN---------VHIRKWIPQQDVLAHPNCRLFIS 58 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~------------~~~-~~~~~---------v~~~~~~~~~~~l~~~~~d~~i~ 58 (124)
++.+.+.+++.+|+.++.+|||++... +.. ..|++ +.+.+|+||.++|.|+++.+|||
T Consensus 280 ~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvt 359 (470)
T PLN03015 280 LTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLS 359 (470)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEe
Confidence 578999999999999999999998631 011 23444 56779999999999999999999
Q ss_pred cCChhhHHHHHHhCCCeeeecccccHHHHHHHH-HHcCceeEec----CCCCCHHHHHHHHHHHhc
Q psy10186 59 HGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHI-VDLGAGVELS----YFNITLESIAWATSIVLN 119 (124)
Q Consensus 59 ~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~-~~~g~g~~~~----~~~~~~~~l~~~l~~ll~ 119 (124)
|||+||++|++++|+|++++|.+.||..||+++ +..|+|+.+. ...++++++.++|+++++
T Consensus 360 H~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 360 HCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred cCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999 5669999985 235799999999999995
No 22
>PLN02764 glycosyltransferase family protein
Probab=99.92 E-value=2.8e-24 Score=158.46 Aligned_cols=121 Identities=27% Similarity=0.327 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC-----CCCC---------CCcEEEeeccChHHhhcCCCcceEEecCChhhHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS-----IENL---------PGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~-----~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ 66 (124)
++.+.+.+++.+|+..+.+|+|++.... .... ...+.+.+|+||.++|.|+++++||||||+||++
T Consensus 270 ~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~ 349 (453)
T PLN02764 270 LEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMW 349 (453)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHH
Confidence 4678999999999999999999987421 1112 3345667999999999999999999999999999
Q ss_pred HHHHhCCCeeeecccccHHHHHHHHHH-cCceeEecCC---CCCHHHHHHHHHHHhcCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSYF---NITLESIAWATSIVLNNP 121 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~~~---~~~~~~l~~~l~~ll~~~ 121 (124)
|++++|+|+|++|.+.||+.||+++++ .|+|+.+..+ .+++++++++++++++++
T Consensus 350 Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 350 ESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred HHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999965 7999887533 579999999999999775
No 23
>KOG1192|consensus
Probab=99.92 E-value=2.5e-24 Score=160.47 Aligned_cols=123 Identities=37% Similarity=0.642 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHhhC-CCeEEEEEcCCC-------CCC-CCCcEEEeeccChHHh-hcCCCcceEEecCChhhHHHHHH
Q psy10186 1 MSDGMRTLLVTAFSRT-GLTVLWRYEGDS-------IEN-LPGNVHIRKWIPQQDV-LAHPNCRLFISHGGVNSALEAIH 70 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~-~~~~i~~~g~~~-------~~~-~~~~v~~~~~~~~~~~-l~~~~~d~~i~~gG~~t~~ea~~ 70 (124)
+|.+...+++.+++.+ +++|+|++.... ..+ .++|+...+|+||.++ +.|+++++||||||+||++|+++
T Consensus 293 lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~ 372 (496)
T KOG1192|consen 293 LPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIY 372 (496)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHh
Confidence 6889999999999999 889999998742 222 2568999999999998 47899999999999999999999
Q ss_pred hCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCC
Q psy10186 71 YGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 71 ~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
+|+|++++|.++||..||+.+++.|.+.+....+.+..++.+++.+++++++|
T Consensus 373 ~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y 425 (496)
T KOG1192|consen 373 SGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEEY 425 (496)
T ss_pred cCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChHH
Confidence 99999999999999999999999988887776666666688888888888776
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.91 E-value=2.2e-24 Score=157.05 Aligned_cols=118 Identities=31% Similarity=0.554 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCC--CCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecc
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDSI--ENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPF 80 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~ 80 (124)
.+.+..+++++...+.+++|.+|.... ...++|+++.+|+|+.+++ +.||++|||||+||++|++++|+|+|++|.
T Consensus 255 ~~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~~~~~v~~~~~~p~~~ll--~~~d~~I~hgG~~t~~eal~~GvP~v~~P~ 332 (401)
T cd03784 255 EALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLL--PRCAAVVHHGGAGTTAAALRAGVPQLVVPF 332 (401)
T ss_pred HHHHHHHHHHHHHcCCeEEEEccCccccccCCCCceEEeCCCCHHHHh--hhhheeeecCCchhHHHHHHcCCCEEeeCC
Confidence 456788889999889999999987643 2457899999999999999 779999999999999999999999999999
Q ss_pred cccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 81 YGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 81 ~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
..||..||+++++.|+|+.+..++++.+++.++++++++++.
T Consensus 333 ~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~~ 374 (401)
T cd03784 333 FGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPPS 374 (401)
T ss_pred CCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHHH
Confidence 999999999999999999998777899999999999997653
No 25
>PLN00414 glycosyltransferase family protein
Probab=99.91 E-value=3.6e-24 Score=158.06 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCC----C-CCCC---------CCcEEEeeccChHHhhcCCCcceEEecCChhhHH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGD----S-IENL---------PGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~----~-~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ 66 (124)
++.+.+.+++.+|+..+.+|+|++... . .... ...+.+.+|+||.++|.|+++++||||||+||++
T Consensus 265 ~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~ 344 (446)
T PLN00414 265 FEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMW 344 (446)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHH
Confidence 457889999999999999999998652 1 0112 2234556999999999999999999999999999
Q ss_pred HHHHhCCCeeeecccccHHHHHHHHH-HcCceeEecCC---CCCHHHHHHHHHHHhcCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRHIV-DLGAGVELSYF---NITLESIAWATSIVLNNP 121 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~~~-~~g~g~~~~~~---~~~~~~l~~~l~~ll~~~ 121 (124)
|++++|+|+|++|.+.||..||++++ ..|+|+.+..+ .++++++.+++++++.++
T Consensus 345 Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 345 ESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred HHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999996 57999998643 389999999999999765
No 26
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.91 E-value=2.4e-23 Score=151.45 Aligned_cols=119 Identities=34% Similarity=0.570 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCC----CCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeec
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDS----IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVP 79 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P 79 (124)
+.+.++++++.+.+++++|..|+.. ....++|+.+.+|+|+.+++ +.||++|||||++|++|++++|+|+|++|
T Consensus 241 ~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll--~~~~~~I~hgG~~t~~Eal~~G~P~v~~p 318 (392)
T TIGR01426 241 SFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEIL--KKADAFITHGGMNSTMEALFNGVPMVAVP 318 (392)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHH--hhCCEEEECCCchHHHHHHHhCCCEEecC
Confidence 4678899999999999999987652 23467899999999999988 77999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCCC
Q psy10186 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 80 ~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~r 124 (124)
...||..|++++++.|+|..+..++++.+++.+++++++.+++||
T Consensus 319 ~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~ 363 (392)
T TIGR01426 319 QGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYA 363 (392)
T ss_pred CcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999878889999999999999987653
No 27
>PLN02534 UDP-glycosyltransferase
Probab=99.88 E-value=8.2e-22 Score=146.84 Aligned_cols=119 Identities=24% Similarity=0.434 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCC---------C----C-C-CCCcEEEeeccChHHhhcCCCcceEEecCChhhH
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDS---------I----E-N-LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSA 65 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~---------~----~-~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~ 65 (124)
++.+.+.+++.+|+.++.+|||+++.+. . . . .+.++.+.+|+||.++|.|+++.+||||||+||+
T Consensus 296 ~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~ 375 (491)
T PLN02534 296 LVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNST 375 (491)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHH
Confidence 4678899999999999999999998421 1 1 1 2457778899999999999999999999999999
Q ss_pred HHHHHhCCCeeeecccccHHHHHHHHHH-cCceeEecC---------C----CCCHHHHHHHHHHHhc
Q psy10186 66 LEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSY---------F----NITLESIAWATSIVLN 119 (124)
Q Consensus 66 ~ea~~~g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~~---------~----~~~~~~l~~~l~~ll~ 119 (124)
+||+++|+|+|++|.+.||..|++++++ .|+|+.+.. + .++++++++++++++.
T Consensus 376 ~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 376 IEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred HHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 9999999999999999999999999975 498887631 1 2689999999999996
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.79 E-value=1.6e-18 Score=122.76 Aligned_cols=107 Identities=25% Similarity=0.381 Sum_probs=92.2
Q ss_pred HHHHHHhhCC-CeEEEEEcCCCCCCCCCcEEEeecc--ChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecc--cc
Q psy10186 8 LLVTAFSRTG-LTVLWRYEGDSIENLPGNVHIRKWI--PQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPF--YG 82 (124)
Q Consensus 8 ~~~~~l~~~~-~~~i~~~g~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~--~~ 82 (124)
.+++++...+ .++++. |........+|+.+..+. +..+.+ +.||++||+||++|++|++++|+|+|++|. +.
T Consensus 206 ~~~~~l~~~~~~~~~v~-g~~~~~~~~~ni~~~~~~~~~~~~~m--~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~ 282 (318)
T PF13528_consen 206 DLIEALKALPDYQFIVF-GPNAADPRPGNIHVRPFSTPDFAELM--AAADLVISKGGYTTISEALALGKPALVIPRPGQD 282 (318)
T ss_pred HHHHHHHhCCCCeEEEE-cCCcccccCCCEEEeecChHHHHHHH--HhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCc
Confidence 5677777776 677776 665544458899999976 456666 889999999999999999999999999999 67
Q ss_pred cHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHH
Q psy10186 83 DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIV 117 (124)
Q Consensus 83 ~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~l 117 (124)
||..||+.++++|+|..+..++++.+.|.+.|+++
T Consensus 283 EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 283 EQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred hHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 99999999999999999998899999999998864
No 29
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.79 E-value=2.8e-20 Score=121.35 Aligned_cols=104 Identities=25% Similarity=0.421 Sum_probs=84.4
Q ss_pred CCeEEEEEcCCCC-------CCCCCcEEEeeccC-hHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccc----cH
Q psy10186 17 GLTVLWRYEGDSI-------ENLPGNVHIRKWIP-QQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYG----DQ 84 (124)
Q Consensus 17 ~~~~i~~~g~~~~-------~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~----~q 84 (124)
.+++++++|+... .....++.+.+|.+ ..+++ ..||++|||||++|++|++++|+|+|++|... +|
T Consensus 31 ~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m--~~aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q 108 (167)
T PF04101_consen 31 NIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELM--AAADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQ 108 (167)
T ss_dssp HCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHH--HHHSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CH
T ss_pred CcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHH--HHcCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHH
Confidence 4789999998642 11236899999999 55566 89999999999999999999999999999987 99
Q ss_pred HHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 85 LSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 85 ~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
..|+..+++.|.+..+.....+.++|.+.|.+++.++.
T Consensus 109 ~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 109 EENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp HHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH
T ss_pred HHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcH
Confidence 99999999999999998777778899999999887654
No 30
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.75 E-value=5.1e-18 Score=122.42 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCCC---CCCcEEEeecc-Ch-HHhhcCCCcceEEecCChhhHHHHHHhCCCeeeeccc-----ccHHH
Q psy10186 17 GLTVLWRYEGDSIEN---LPGNVHIRKWI-PQ-QDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY-----GDQLS 86 (124)
Q Consensus 17 ~~~~i~~~g~~~~~~---~~~~v~~~~~~-~~-~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~-----~~q~~ 86 (124)
+++++|++|+++.++ ...++.+.+|+ +. .+++ ..||++|||||++|+.|++++|+|+|++|.. .+|..
T Consensus 214 ~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~~~--~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~ 291 (352)
T PRK12446 214 KYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPDIL--AITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQIL 291 (352)
T ss_pred CcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHH
Confidence 489999999875322 11355667887 44 4455 7899999999999999999999999999984 48999
Q ss_pred HHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 87 HVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 87 ~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
||+.+++.|++..+..++++.+.+.+++.++++|+
T Consensus 292 Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 292 NAESFERQGYASVLYEEDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred HHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCH
Confidence 99999999999999888899999999999998775
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=5.3e-17 Score=117.07 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCC----C-CCc-EEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIEN----L-PGN-VHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~----~-~~~-v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~ 78 (124)
.+.+.+..+.+ ++++++++|++...+ . ..+ +.+.+|++.+..++ ..+|++||++|++|+.|.+++|+|+|++
T Consensus 201 ~v~~~~~~l~~-~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~-~~ADLvIsRaGa~Ti~E~~a~g~P~Ili 278 (357)
T COG0707 201 LVPEALAKLAN-RIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALL-AAADLVISRAGALTIAELLALGVPAILV 278 (357)
T ss_pred HHHHHHHHhhh-CeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHH-HhccEEEeCCcccHHHHHHHhCCCEEEe
Confidence 34444444444 589999999975211 1 112 88899998777555 8999999999999999999999999999
Q ss_pred ccc----ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 79 PFY----GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 79 P~~----~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
|.. .+|..||+.+++.|+|..+..++++.+++.+.|.+++.+|
T Consensus 279 P~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 279 PYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNP 325 (357)
T ss_pred CCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCH
Confidence 984 4899999999999999999999999999999999999764
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.73 E-value=8.7e-17 Score=114.61 Aligned_cols=112 Identities=25% Similarity=0.383 Sum_probs=86.0
Q ss_pred HHHHHHHHhhCCC-eEEEEEcCCC-CCCCCCcEEEeeccC--hHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeeccc
Q psy10186 6 RTLLVTAFSRTGL-TVLWRYEGDS-IENLPGNVHIRKWIP--QQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY 81 (124)
Q Consensus 6 ~~~~~~~l~~~~~-~~i~~~g~~~-~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~ 81 (124)
...+++.+.+.+. .+++. +.+. ....++|+.+.+|.+ ..+.+ +.||++|||||++|++|++++|+|++++|..
T Consensus 200 ~~~l~~~l~~~~~~~~i~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l--~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~ 276 (321)
T TIGR00661 200 RYKILELLGKIANVKFVCY-SYEVAKNSYNENVEIRRITTDNFKELI--KNAELVITHGGFSLISEALSLGKPLIVIPDL 276 (321)
T ss_pred HHHHHHHHHhCCCeEEEEe-CCCCCccccCCCEEEEECChHHHHHHH--HhCCEEEECCChHHHHHHHHcCCCEEEEcCC
Confidence 3456777777653 44432 2222 233567999999986 34455 8999999999999999999999999999985
Q ss_pred c--cHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCC
Q psy10186 82 G--DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 82 ~--~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
. ||..||+.+++.|+|+.+..+++ ++.+++.+++++++|
T Consensus 277 ~~~eQ~~na~~l~~~g~~~~l~~~~~---~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 277 GQFEQGNNAVKLEDLGCGIALEYKEL---RLLEAILDIRNMKRY 317 (321)
T ss_pred CcccHHHHHHHHHHCCCEEEcChhhH---HHHHHHHhccccccc
Confidence 4 89999999999999999976554 566667777777776
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.56 E-value=7.7e-14 Score=100.38 Aligned_cols=111 Identities=24% Similarity=0.329 Sum_probs=88.2
Q ss_pred HHHhhCC--CeEEEEEcCCCCC------CCCCcEEEeeccC-hHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecc-
Q psy10186 11 TAFSRTG--LTVLWRYEGDSIE------NLPGNVHIRKWIP-QQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPF- 80 (124)
Q Consensus 11 ~~l~~~~--~~~i~~~g~~~~~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~- 80 (124)
+++.+.. ..+++.+|..... +..-++.+.+|++ ..+++ +.+|++|+|+|.++++||+++|+|+|++|.
T Consensus 204 ~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~ 281 (357)
T PRK00726 204 EALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAY--AAADLVICRAGASTVAELAAAGLPAILVPLP 281 (357)
T ss_pred HHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHH--HhCCEEEECCCHHHHHHHHHhCCCEEEecCC
Confidence 4544432 2566777875311 1222378889984 45666 899999999999999999999999999986
Q ss_pred ---cccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCC
Q psy10186 81 ---YGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 81 ---~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
.++|..|++.+.+.|.|..+..++++.+++.++++++++++++
T Consensus 282 ~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 327 (357)
T PRK00726 282 HAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPER 327 (357)
T ss_pred CCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHH
Confidence 3689999999999999999988788899999999999988764
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.54 E-value=1.5e-13 Score=98.28 Aligned_cols=113 Identities=25% Similarity=0.337 Sum_probs=89.2
Q ss_pred HHHHHHhhCCCeEEEEEcCCCC-------CCCCCcEEEeecc-ChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeec
Q psy10186 8 LLVTAFSRTGLTVLWRYEGDSI-------ENLPGNVHIRKWI-PQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVP 79 (124)
Q Consensus 8 ~~~~~l~~~~~~~i~~~g~~~~-------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P 79 (124)
+.++.+.+.+..+++.+|.... .+..+|+.+.+|. +..+++ ..||++++++|.+|++||+++|+|+++.|
T Consensus 202 ~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l--~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~ 279 (350)
T cd03785 202 EALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAY--AAADLVISRAGASTVAELAALGLPAILIP 279 (350)
T ss_pred HHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHH--HhcCEEEECCCHhHHHHHHHhCCCEEEee
Confidence 3344444345677777777531 1124689999998 445566 89999999999999999999999999987
Q ss_pred c----cccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 80 F----YGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 80 ~----~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
. ..+|..|++.+.+.|.|..+..++.+.+++.++++++++++.
T Consensus 280 ~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 280 LPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPE 326 (350)
T ss_pred cCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHH
Confidence 5 367899999999999999998766789999999999998764
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.45 E-value=1.5e-12 Score=92.41 Aligned_cols=118 Identities=24% Similarity=0.239 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhh-CCCe--EEEEEcCCCC----------CCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHH
Q psy10186 4 GMRTLLVTAFSR-TGLT--VLWRYEGDSI----------ENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIH 70 (124)
Q Consensus 4 ~~~~~~~~~l~~-~~~~--~i~~~g~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~ 70 (124)
+++...+++-.- .+.+ .++++|+.-+ ...-+++.+..|.....-+. ..++.+|+.||+||++|-++
T Consensus 234 eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll-~gA~~vVSm~GYNTvCeILs 312 (400)
T COG4671 234 ELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLL-AGARLVVSMGGYNTVCEILS 312 (400)
T ss_pred HHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHH-HhhheeeecccchhhhHHHh
Confidence 455555555544 3443 6677887421 12347999999987655444 79999999999999999999
Q ss_pred hCCCeeeeccc---ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 71 YGIPIIGVPFY---GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 71 ~g~P~l~~P~~---~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
.|||.+++|+. .||...|++++++|+.-++.+++++++.++++|...+..|+
T Consensus 313 ~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 313 FGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPS 367 (400)
T ss_pred CCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCC
Confidence 99999999995 48999999999999999999999999999999999987554
No 36
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.44 E-value=1.1e-12 Score=95.93 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=88.4
Q ss_pred HHHHHHHHHh-hC-CCeEEEEEcCCC-----C---CCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCC
Q psy10186 5 MRTLLVTAFS-RT-GLTVLWRYEGDS-----I---ENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIP 74 (124)
Q Consensus 5 ~~~~~~~~l~-~~-~~~~i~~~g~~~-----~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P 74 (124)
-++.+++++. .. +.++++++|++. . ....+++.+.+|++...-++ ..+|++|+.+|..|+.||+++|+|
T Consensus 217 ~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~-~~aDl~I~k~gg~tl~EA~a~G~P 295 (391)
T PRK13608 217 GFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWM-ASSQLMITKPGGITISEGLARCIP 295 (391)
T ss_pred hHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHH-HhhhEEEeCCchHHHHHHHHhCCC
Confidence 3455666543 22 468888888653 1 11345789999997655333 899999999999999999999999
Q ss_pred eeee-cccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 75 IIGV-PFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 75 ~l~~-P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
+|+. |..++|..|+..+.+.|+|+... +.+++.+++.++++|++
T Consensus 296 vI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 296 MIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNE 340 (391)
T ss_pred EEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCHH
Confidence 9998 66677889999999999998876 78899999999997764
No 37
>KOG3349|consensus
Probab=99.44 E-value=2.8e-12 Score=81.07 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=73.5
Q ss_pred HHHHHHHhhCCC-eEEEEEcCCCC-CC-------CCCc--EEEeeccCh-HHhhcCCCcceEEecCChhhHHHHHHhCCC
Q psy10186 7 TLLVTAFSRTGL-TVLWRYEGDSI-EN-------LPGN--VHIRKWIPQ-QDVLAHPNCRLFISHGGVNSALEAIHYGIP 74 (124)
Q Consensus 7 ~~~~~~l~~~~~-~~i~~~g~~~~-~~-------~~~~--v~~~~~~~~-~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P 74 (124)
++..+.|.+.|+ +.+++.|+... .. .-.. +...+|-|. .+-+ +.+|++|+|+|+||++|.+..|+|
T Consensus 25 ~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I--~~AdlVIsHAGaGS~letL~l~KP 102 (170)
T KOG3349|consen 25 EEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDI--RSADLVISHAGAGSCLETLRLGKP 102 (170)
T ss_pred HHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHH--hhccEEEecCCcchHHHHHHcCCC
Confidence 455677788886 89999999741 11 1122 344556675 4444 679999999999999999999999
Q ss_pred eeeeccc----ccHHHHHHHHHHcCceeEecCCC
Q psy10186 75 IIGVPFY----GDQLSHVRHIVDLGAGVELSYFN 104 (124)
Q Consensus 75 ~l~~P~~----~~q~~~a~~~~~~g~g~~~~~~~ 104 (124)
.|+++.. ++|...|..+++.|.-....+++
T Consensus 103 livVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 103 LIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred EEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccc
Confidence 9999874 68999999999999887776544
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.39 E-value=4.8e-12 Score=91.90 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=87.9
Q ss_pred HHHHHHHHhhC-CCeEEEEEcCCC---------CCCCCCcEEEeeccChH-HhhcCCCcceEEecCChhhHHHHHHhCCC
Q psy10186 6 RTLLVTAFSRT-GLTVLWRYEGDS---------IENLPGNVHIRKWIPQQ-DVLAHPNCRLFISHGGVNSALEAIHYGIP 74 (124)
Q Consensus 6 ~~~~~~~l~~~-~~~~i~~~g~~~---------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~gG~~t~~ea~~~g~P 74 (124)
+..+++++.+. +.++++++|.+. ....+.++.+.+|++.. +++ ..+|++|+.+|..|++||+++|+|
T Consensus 218 ~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~--~~aD~~v~~~gg~t~~EA~a~g~P 295 (380)
T PRK13609 218 VKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELF--RVTSCMITKPGGITLSEAAALGVP 295 (380)
T ss_pred HHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHH--HhccEEEeCCCchHHHHHHHhCCC
Confidence 45667777654 478888877542 11234589999999875 455 789999999999999999999999
Q ss_pred eeee-cccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 75 IIGV-PFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 75 ~l~~-P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
+|+. |..+++..|+..+++.|+++... +.+++.+++.++++|++
T Consensus 296 vI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~~ 340 (380)
T PRK13609 296 VILYKPVPGQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDDM 340 (380)
T ss_pred EEECCCCCCcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCHH
Confidence 9985 66677888999999999998764 78999999999998764
No 39
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.37 E-value=1.1e-11 Score=88.63 Aligned_cols=111 Identities=23% Similarity=0.355 Sum_probs=81.7
Q ss_pred HHHhhCCCeEEEEEcCCCCCC------CCCcEEEeecc--ChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeeccc-
Q psy10186 11 TAFSRTGLTVLWRYEGDSIEN------LPGNVHIRKWI--PQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY- 81 (124)
Q Consensus 11 ~~l~~~~~~~i~~~g~~~~~~------~~~~v~~~~~~--~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~- 81 (124)
+.+.+.+.++++++|+..... ..+-...+.+. +..+++ ..||++|+++|.++++||+++|+|+|..|..
T Consensus 203 ~~l~~~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~~~~~~~l--~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 203 AKLAEKGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFIDENMAAAY--AAADLVISRAGASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred HHHhhcCcEEEEECCcchHHHHHHHHhhCCceEEecCcccCHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEeeCCC
Confidence 333344567777677643110 11111222233 456667 8899999999988999999999999998763
Q ss_pred --ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCC
Q psy10186 82 --GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 82 --~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
.+|..|++.+.+.+.|..+.+.+.+.+++.++++++++|+++
T Consensus 281 ~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~ 324 (348)
T TIGR01133 281 AADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPAN 324 (348)
T ss_pred CccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHH
Confidence 468889999999999999887777899999999999988753
No 40
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.36 E-value=8.3e-12 Score=90.96 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCC-----CC--CCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeeccc-ccHHHHH
Q psy10186 17 GLTVLWRYEGDS-----IE--NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY-GDQLSHV 88 (124)
Q Consensus 17 ~~~~i~~~g~~~-----~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~-~~q~~~a 88 (124)
+.++++++|++. .. ....++++.+|+++...++ ..+|++|+.+|.+|++||+++|+|+|+.+.. +.+..|+
T Consensus 241 ~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~-~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~ 319 (382)
T PLN02605 241 IGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWM-GACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNV 319 (382)
T ss_pred CceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHH-HhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhH
Confidence 467788888753 11 1234688999998666554 7999999999999999999999999998654 4556899
Q ss_pred HHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 89 RHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 89 ~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
..+.+.|.|.... +.+++.+++.+++.+
T Consensus 320 ~~i~~~g~g~~~~----~~~~la~~i~~ll~~ 347 (382)
T PLN02605 320 PYVVDNGFGAFSE----SPKEIARIVAEWFGD 347 (382)
T ss_pred HHHHhCCceeecC----CHHHHHHHHHHHHcC
Confidence 9999999998764 789999999999876
No 41
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.32 E-value=7.9e-12 Score=87.79 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhC--CCeEEEEEcCCCCC--------CCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCC
Q psy10186 5 MRTLLVTAFSRT--GLTVLWRYEGDSIE--------NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIP 74 (124)
Q Consensus 5 ~~~~~~~~l~~~--~~~~i~~~g~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P 74 (124)
....+++++.+. +.++.+++|+.... ...+|+.+..+++++.-++ ..||++||+|| +|++|++++|+|
T Consensus 185 ~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm-~~aDl~Is~~G-~T~~E~~a~g~P 262 (279)
T TIGR03590 185 LTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELM-NEADLAIGAAG-STSWERCCLGLP 262 (279)
T ss_pred HHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHH-HHCCEEEECCc-hHHHHHHHcCCC
Confidence 345667777654 46888899885421 2356899999998875444 89999999999 899999999999
Q ss_pred eeeecccccHHHHHHH
Q psy10186 75 IIGVPFYGDQLSHVRH 90 (124)
Q Consensus 75 ~l~~P~~~~q~~~a~~ 90 (124)
+|++|...+|..||+.
T Consensus 263 ~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 263 SLAICLAENQQSNSQQ 278 (279)
T ss_pred EEEEEecccHHHHhhh
Confidence 9999999999999975
No 42
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=9.8e-10 Score=76.29 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC--------CCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI--------ENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPII 76 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l 76 (124)
+.-+++..|.+.++.+-+++|..++ .+..+|+.+......+..|+ ..||+.|+.||. |++|+++.|+|.+
T Consensus 173 lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LM-ke~d~aI~AaGs-tlyEa~~lgvP~l 250 (318)
T COG3980 173 LTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELM-KEADLAISAAGS-TLYEALLLGVPSL 250 (318)
T ss_pred hHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHH-Hhcchheeccch-HHHHHHHhcCCce
Confidence 4566777777777778788885331 23567899888888666555 799999999998 8999999999999
Q ss_pred eecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCCC
Q psy10186 77 GVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 77 ~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~r 124 (124)
++|...+|...|..++.+|+..-+... +........+.++..|+.+|
T Consensus 251 ~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~~r 297 (318)
T COG3980 251 VLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDYARR 297 (318)
T ss_pred EEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhhCHHHh
Confidence 999999999999999999988777533 45566666677777666543
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.89 E-value=5.2e-09 Score=76.92 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=64.0
Q ss_pred EEEeeccC-hHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHHHHc----CceeEecCCCCCHHHH
Q psy10186 36 VHIRKWIP-QQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDL----GAGVELSYFNITLESI 110 (124)
Q Consensus 36 v~~~~~~~-~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~----g~g~~~~~~~~~~~~l 110 (124)
+.+..+.. ..+++ ..||++|+.+|..| .|++.+|+|+|++|....|. |+..+++. |.+..+.. .+.+.+
T Consensus 281 ~~v~~~~~~~~~~l--~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l 354 (396)
T TIGR03492 281 LEVLLGRGAFAEIL--HWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQA 354 (396)
T ss_pred eEEEechHhHHHHH--HhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHH
Confidence 55555554 44556 78999999999877 99999999999999878887 88877774 66666643 356899
Q ss_pred HHHHHHHhcCCC
Q psy10186 111 AWATSIVLNNPR 122 (124)
Q Consensus 111 ~~~l~~ll~~~~ 122 (124)
.+.+.++++|+.
T Consensus 355 ~~~l~~ll~d~~ 366 (396)
T TIGR03492 355 AQVVRQLLADPE 366 (396)
T ss_pred HHHHHHHHcCHH
Confidence 999999998764
No 44
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=5e-08 Score=61.07 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCCCCCCcEEEeecc--ChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeeccc--------ccHHHH
Q psy10186 18 LTVLWRYEGDSIENLPGNVHIRKWI--PQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY--------GDQLSH 87 (124)
Q Consensus 18 ~~~i~~~g~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~--------~~q~~~ 87 (124)
.++|+++|+.+.....+ .++.+|. +...-+. ..++++|+|+|.||++.++..++|.|++|+. .+|...
T Consensus 31 e~lIvQyGn~d~kpvag-l~v~~F~~~~kiQsli-~darIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvel 108 (161)
T COG5017 31 EELIVQYGNGDIKPVAG-LRVYGFDKEEKIQSLI-HDARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVEL 108 (161)
T ss_pred hheeeeecCCCcccccc-cEEEeechHHHHHHHh-hcceEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHH
Confidence 49999999976443222 4555553 4444444 4677999999999999999999999999985 368889
Q ss_pred HHHHHHcCceeEecCC
Q psy10186 88 VRHIVDLGAGVELSYF 103 (124)
Q Consensus 88 a~~~~~~g~g~~~~~~ 103 (124)
|..+.+.+.-....+.
T Consensus 109 a~klae~~~vv~~spt 124 (161)
T COG5017 109 ALKLAEINYVVACSPT 124 (161)
T ss_pred HHHHHhcCceEEEcCC
Confidence 9999999887777643
No 45
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.83 E-value=1.1e-08 Score=75.00 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=65.0
Q ss_pred hHHhhcCCCcceEEecCChhhHHHHHHhCCCeeee----cccc---------cHHHHHHHHHHcCceeEecCCCCCHHHH
Q psy10186 44 QQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGV----PFYG---------DQLSHVRHIVDLGAGVELSYFNITLESI 110 (124)
Q Consensus 44 ~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~----P~~~---------~q~~~a~~~~~~g~g~~~~~~~~~~~~l 110 (124)
..+.+ ..+|++|+.+|..|+ |++++|+|+|++ |+.. .|..|+..+.+.++.-.+..++++.+.+
T Consensus 261 ~~~~l--~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l 337 (385)
T TIGR00215 261 ARKAM--FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPL 337 (385)
T ss_pred HHHHH--HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHH
Confidence 34456 789999999999877 999999999999 7642 2777999999999998877788999999
Q ss_pred HHHHHHHhcCC
Q psy10186 111 AWATSIVLNNP 121 (124)
Q Consensus 111 ~~~l~~ll~~~ 121 (124)
.+.+.++++|+
T Consensus 338 ~~~~~~ll~~~ 348 (385)
T TIGR00215 338 AIALLLLLENG 348 (385)
T ss_pred HHHHHHHhcCC
Confidence 99999999887
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.69 E-value=1.2e-07 Score=67.16 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCC---CCCCCCcEEEeeccChHHhhcC-CCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHH
Q psy10186 17 GLTVLWRYEGDS---IENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHV 88 (124)
Q Consensus 17 ~~~~i~~~g~~~---~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a 88 (124)
++++++..++.. ......++.+.+++++.++... ..+|+++.++. .++++||+++|+|+|+.+.. .+.
T Consensus 227 ~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~ 302 (364)
T cd03814 227 PVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPA 302 (364)
T ss_pred CceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCC----Cch
Confidence 456655544332 1234678999999887663222 88999998764 47899999999999997544 345
Q ss_pred HHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 89 RHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 89 ~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
+.+++.+.|..+.+ .+.+++.+++.+++.+++
T Consensus 303 ~~i~~~~~g~~~~~--~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 303 DIVTDGENGLLVEP--GDAEAFAAALAALLADPE 334 (364)
T ss_pred hhhcCCcceEEcCC--CCHHHHHHHHHHHHcCHH
Confidence 56666788888753 357889999999998765
No 47
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.67 E-value=2.5e-07 Score=66.99 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=73.7
Q ss_pred HHHHHHHHhhC-----CCeEEEEEcCCC--------CCCCCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHHh
Q psy10186 6 RTLLVTAFSRT-----GLTVLWRYEGDS--------IENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHY 71 (124)
Q Consensus 6 ~~~~~~~l~~~-----~~~~i~~~g~~~--------~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~ 71 (124)
+..+++++..+ +.++++..+++. .....+++++.+.++..+.+.. ..+|++++.+|.. +.||+++
T Consensus 214 ~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg~~-~~EA~a~ 292 (365)
T TIGR00236 214 LENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDSGGV-QEEAPSL 292 (365)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECChhH-HHHHHHc
Confidence 45566665443 467777655432 0123457888887776543322 7899999988764 7999999
Q ss_pred CCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 72 GIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 72 g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
|+|+|..+..+++.. +.+.|.+..+. .+.+++.+++.++++++.
T Consensus 293 g~PvI~~~~~~~~~e----~~~~g~~~lv~---~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 293 GKPVLVLRDTTERPE----TVEAGTNKLVG---TDKENITKAAKRLLTDPD 336 (365)
T ss_pred CCCEEECCCCCCChH----HHhcCceEEeC---CCHHHHHHHHHHHHhChH
Confidence 999999876554432 23356666653 278999999999998765
No 48
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.64 E-value=6.3e-07 Score=66.16 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=61.5
Q ss_pred cEEEeeccCh-HHhhcCCCcceEEec-----CChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHH
Q psy10186 35 NVHIRKWIPQ-QDVLAHPNCRLFISH-----GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLE 108 (124)
Q Consensus 35 ~v~~~~~~~~-~~~l~~~~~d~~i~~-----gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~ 108 (124)
++.+.+.... ..++ ..+|+++.. +|..+++||+++|+|+|..|...++....+.+.+.|.++... +.+
T Consensus 303 ~v~l~~~~~el~~~y--~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~ 376 (425)
T PRK05749 303 DVLLGDTMGELGLLY--AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAE 376 (425)
T ss_pred cEEEEecHHHHHHHH--HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHH
Confidence 3455444333 3344 789995442 455679999999999999998888888888777778777655 789
Q ss_pred HHHHHHHHHhcCCC
Q psy10186 109 SIAWATSIVLNNPR 122 (124)
Q Consensus 109 ~l~~~l~~ll~~~~ 122 (124)
++.+++.++++|+.
T Consensus 377 ~La~~l~~ll~~~~ 390 (425)
T PRK05749 377 DLAKAVTYLLTDPD 390 (425)
T ss_pred HHHHHHHHHhcCHH
Confidence 99999999998764
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.63 E-value=3.3e-07 Score=64.71 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCCC------CCCCcEEEeeccChHHhhcC-CCcceEEecC-----ChhhHHHHHHhCCCeeeecccccH
Q psy10186 17 GLTVLWRYEGDSIE------NLPGNVHIRKWIPQQDVLAH-PNCRLFISHG-----GVNSALEAIHYGIPIIGVPFYGDQ 84 (124)
Q Consensus 17 ~~~~i~~~g~~~~~------~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g-----G~~t~~ea~~~g~P~l~~P~~~~q 84 (124)
++++++..+..... ....++.+.++++..++... ..+|++++.+ ...+++||+++|+|+|..+ .
T Consensus 220 ~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~----~ 295 (359)
T cd03823 220 DIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASD----I 295 (359)
T ss_pred CcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECC----C
Confidence 56776554443211 13478999999976554222 7899988543 3457999999999999964 3
Q ss_pred HHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 85 LSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 85 ~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
....+.+.+.+.|..+.++ +.+++.+++.++++++.
T Consensus 296 ~~~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 296 GGMAELVRDGVNGLLFPPG--DAEDLAAALERLIDDPD 331 (359)
T ss_pred CCHHHHhcCCCcEEEECCC--CHHHHHHHHHHHHhChH
Confidence 3456666766788888643 48999999999998764
No 50
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.60 E-value=2.7e-07 Score=66.97 Aligned_cols=77 Identities=14% Similarity=0.046 Sum_probs=54.2
Q ss_pred hHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccccHH-HH------------HHHHHHcCceeEecCCCCCHHHH
Q psy10186 44 QQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQL-SH------------VRHIVDLGAGVELSYFNITLESI 110 (124)
Q Consensus 44 ~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~-~~------------a~~~~~~g~g~~~~~~~~~~~~l 110 (124)
...++ ..+|++|+.+|.+++ |++++|+|+|++|...... .. ++.+.+.+++..+..+..+.+++
T Consensus 255 ~~~~~--~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 331 (380)
T PRK00025 255 KREAM--AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKL 331 (380)
T ss_pred HHHHH--HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHH
Confidence 34555 789999999998776 9999999999996543221 11 23333333343344456689999
Q ss_pred HHHHHHHhcCCCC
Q psy10186 111 AWATSIVLNNPRR 123 (124)
Q Consensus 111 ~~~l~~ll~~~~~ 123 (124)
.+.+.++++|++.
T Consensus 332 ~~~i~~ll~~~~~ 344 (380)
T PRK00025 332 ARALLPLLADGAR 344 (380)
T ss_pred HHHHHHHhcCHHH
Confidence 9999999998754
No 51
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.57 E-value=6.2e-07 Score=63.74 Aligned_cols=112 Identities=18% Similarity=0.152 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhCC-CeEEEEEcCCC---------CCCCCCcEEEeeccChHHhhcC-CCcceEEecC-----C-hhhHHH
Q psy10186 5 MRTLLVTAFSRTG-LTVLWRYEGDS---------IENLPGNVHIRKWIPQQDVLAH-PNCRLFISHG-----G-VNSALE 67 (124)
Q Consensus 5 ~~~~~~~~l~~~~-~~~i~~~g~~~---------~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g-----G-~~t~~e 67 (124)
-+..+++++.+.. +++++...+.. ......|+.+.+++++.++... ..||+++... | ..+++|
T Consensus 205 ~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~E 284 (357)
T cd03795 205 GLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLE 284 (357)
T ss_pred CHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHH
Confidence 3455667776665 67766554432 1234578999999997553222 7899988432 2 457999
Q ss_pred HHHhCCCeeeecccccHHHHHHHHHH-cCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 68 AIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 68 a~~~g~P~l~~P~~~~q~~~a~~~~~-~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
|+++|+|+|....... ...+.. .+.|..+.. .+.+++.+++.+++++++
T Consensus 285 a~~~g~Pvi~~~~~~~----~~~i~~~~~~g~~~~~--~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 285 AMAFGKPVISTEIGTG----GSYVNLHGVTGLVVPP--GDPAALAEAIRRLLEDPE 334 (357)
T ss_pred HHHcCCCEEecCCCCc----hhHHhhCCCceEEeCC--CCHHHHHHHHHHHHHCHH
Confidence 9999999999643333 333443 577877753 368999999999998874
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.56 E-value=3.8e-07 Score=65.88 Aligned_cols=84 Identities=21% Similarity=0.250 Sum_probs=64.5
Q ss_pred CCcEEEeeccChHHhhcC-CCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCH
Q psy10186 33 PGNVHIRKWIPQQDVLAH-PNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL 107 (124)
Q Consensus 33 ~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 107 (124)
..++.+.++++..++... ..+|++++.+- ..+++||+++|+|+|+-+ .....+.+++.+.|..+.+. +.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~----~~~~~e~i~~~~~g~~~~~~--~~ 355 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATA----VGGPRDIVVDGVTGLLVDPR--DP 355 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECC----CCCHHHHccCCCCeEEeCCC--CH
Confidence 468999999998764322 78999987642 468999999999999864 33456667777889888633 58
Q ss_pred HHHHHHHHHHhcCCC
Q psy10186 108 ESIAWATSIVLNNPR 122 (124)
Q Consensus 108 ~~l~~~l~~ll~~~~ 122 (124)
+++.+++.++++++.
T Consensus 356 ~~l~~~i~~l~~~~~ 370 (398)
T cd03800 356 EALAAALRRLLTDPA 370 (398)
T ss_pred HHHHHHHHHHHhCHH
Confidence 999999999987764
No 53
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.55 E-value=2.5e-07 Score=66.29 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CCCCCcEEEeeccChHHhhcC-CCcceEEecC--C-hhhHHHHHHhCCCee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----ENLPGNVHIRKWIPQQDVLAH-PNCRLFISHG--G-VNSALEAIHYGIPII 76 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g--G-~~t~~ea~~~g~P~l 76 (124)
-+..+++++...+.+++++.++... ....+|+.+.++++..++... ..+|+++... | ..+++||+++|+|+|
T Consensus 209 ~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi 288 (351)
T cd03804 209 RIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVI 288 (351)
T ss_pred ChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEE
Confidence 3556778888888777666544321 135679999999998654322 7899988653 2 356889999999999
Q ss_pred eecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 77 GVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 77 ~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
..... ...+.+.+...|..+.++ +.+++.+++.++++++
T Consensus 289 ~~~~~----~~~e~i~~~~~G~~~~~~--~~~~la~~i~~l~~~~ 327 (351)
T cd03804 289 AYGKG----GALETVIDGVTGILFEEQ--TVESLAAAVERFEKNE 327 (351)
T ss_pred EeCCC----CCcceeeCCCCEEEeCCC--CHHHHHHHHHHHHhCc
Confidence 97432 234455666788888533 5888999999999887
No 54
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.55 E-value=7.9e-07 Score=64.00 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhCC---CeEEEEEcCC---CC----CCC---CCcEEEeeccChHH---hhcCCCcceEEecCChhhHH
Q psy10186 3 DGMRTLLVTAFSRTG---LTVLWRYEGD---SI----ENL---PGNVHIRKWIPQQD---VLAHPNCRLFISHGGVNSAL 66 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~---~~~i~~~g~~---~~----~~~---~~~v~~~~~~~~~~---~l~~~~~d~~i~~gG~~t~~ 66 (124)
.+.+..+++++.... ..+++...+. .. .+. .+++.+.++.+..+ ++ ..||++|+.+| +.+.
T Consensus 214 ~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~ad~~v~~Sg-gi~~ 290 (363)
T cd03786 214 GEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLL--KNADLVLTDSG-GIQE 290 (363)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHH--HcCcEEEEcCc-cHHh
Confidence 455677777776653 3343322221 11 111 46788877655433 34 78999999999 6788
Q ss_pred HHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCC
Q psy10186 67 EAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
|++++|+|+|.++...+ +..+.+.|.+..+.. +.+++.+++.++++++..
T Consensus 291 Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~~~ 340 (363)
T cd03786 291 EASFLGVPVLNLRDRTE----RPETVESGTNVLVGT---DPEAILAAIEKLLSDEFA 340 (363)
T ss_pred hhhhcCCCEEeeCCCCc----cchhhheeeEEecCC---CHHHHHHHHHHHhcCchh
Confidence 99999999999863322 334555677766641 489999999999987643
No 55
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.49 E-value=3.2e-06 Score=61.08 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=75.9
Q ss_pred HHHHHHHHhhC--CCeEEEEEcCCC---------CCCCCCcEEEeeccCh--HHhhc-CCCcceEEecCC----hhhHHH
Q psy10186 6 RTLLVTAFSRT--GLTVLWRYEGDS---------IENLPGNVHIRKWIPQ--QDVLA-HPNCRLFISHGG----VNSALE 67 (124)
Q Consensus 6 ~~~~~~~l~~~--~~~~i~~~g~~~---------~~~~~~~v~~~~~~~~--~~~l~-~~~~d~~i~~gG----~~t~~e 67 (124)
+..+++++... +.+++++.++.. ..+.++++.+.++.+. ..+.. +..+|+++..+- ..+++|
T Consensus 197 ~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lE 276 (359)
T PRK09922 197 VKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLE 276 (359)
T ss_pred HHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHH
Confidence 44566666554 456665543332 1124678999998753 22211 157899887643 579999
Q ss_pred HHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCCC
Q psy10186 68 AIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 68 a~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~r 124 (124)
|+++|+|+|..-. .....+.+++...|..+.+ .+.+++.+++.+++++++.|
T Consensus 277 Ama~G~Pvv~s~~---~~g~~eiv~~~~~G~lv~~--~d~~~la~~i~~l~~~~~~~ 328 (359)
T PRK09922 277 AMSYGIPCISSDC---MSGPRDIIKPGLNGELYTP--GNIDEFVGKLNKVISGEVKY 328 (359)
T ss_pred HHHcCCCEEEeCC---CCChHHHccCCCceEEECC--CCHHHHHHHHHHHHhCcccC
Confidence 9999999998631 2233355666667888753 37999999999999998753
No 56
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.48 E-value=5.3e-07 Score=67.41 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhC-CCeEEEEEcCCCC---CC--CCCcEEEeeccChHHhhcC-CCcceEEecCC----hhhHHHHHHhC
Q psy10186 4 GMRTLLVTAFSRT-GLTVLWRYEGDSI---EN--LPGNVHIRKWIPQQDVLAH-PNCRLFISHGG----VNSALEAIHYG 72 (124)
Q Consensus 4 ~~~~~~~~~l~~~-~~~~i~~~g~~~~---~~--~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG----~~t~~ea~~~g 72 (124)
+.+..+++++... +.+++++.++... .+ ...++.+.++++..++... ..+|++|.... ..+++||+++|
T Consensus 276 K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G 355 (465)
T PLN02871 276 KNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASG 355 (465)
T ss_pred hhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcC
Confidence 3455666777665 4676655433221 11 2347899999986653332 88999997764 35789999999
Q ss_pred CCeeeecccccHHHHHHHHHH---cCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 73 IPIIGVPFYGDQLSHVRHIVD---LGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 73 ~P~l~~P~~~~q~~~a~~~~~---~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
+|+|+.... ...+.+.+ .+.|..+.++ +.+++.+++.++++++.
T Consensus 356 ~PVI~s~~g----g~~eiv~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 356 VPVVAARAG----GIPDIIPPDQEGKTGFLYTPG--DVDDCVEKLETLLADPE 402 (465)
T ss_pred CCEEEcCCC----CcHhhhhcCCCCCceEEeCCC--CHHHHHHHHHHHHhCHH
Confidence 999986432 23445555 6788888643 58899999999998765
No 57
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.48 E-value=3.1e-07 Score=59.47 Aligned_cols=83 Identities=28% Similarity=0.356 Sum_probs=64.4
Q ss_pred CCCcEEEeeccChHH---hhcCCCcceEEec----CChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCC
Q psy10186 32 LPGNVHIRKWIPQQD---VLAHPNCRLFISH----GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFN 104 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~---~l~~~~~d~~i~~----gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~ 104 (124)
...++.+.++.+..+ ++ ..+|++++. +...+++||+++|+|+|+- +...+.+.+.+...|..+...
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~--~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~~~g~~~~~~- 143 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELY--KSSDIFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDGVNGFLFDPN- 143 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHH--HHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTTTSEEEESTT-
T ss_pred cccccccccccccccccccc--ccceeccccccccccccccccccccccceeec----cccCCceeeccccceEEeCCC-
Confidence 567899999998433 44 679999988 4567999999999999984 566667777777889998743
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy10186 105 ITLESIAWATSIVLNNPR 122 (124)
Q Consensus 105 ~~~~~l~~~l~~ll~~~~ 122 (124)
+.+++.+++.++++++.
T Consensus 144 -~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 144 -DIEELADAIEKLLNDPE 160 (172)
T ss_dssp -SHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHCCHH
Confidence 79999999999987753
No 58
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.48 E-value=8.2e-07 Score=62.84 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCC---------CCCCCcEEEeeccChHHhhcC-CCcceEEecCC----hhhHHHHHHhCCCeeeecccc
Q psy10186 17 GLTVLWRYEGDSI---------ENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGG----VNSALEAIHYGIPIIGVPFYG 82 (124)
Q Consensus 17 ~~~~i~~~g~~~~---------~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~ 82 (124)
++++++..++... ....+++.+.+++++.++... ..+|+++..+. ..+++||+++|+|+|+..
T Consensus 233 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~--- 309 (374)
T cd03817 233 DVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVD--- 309 (374)
T ss_pred CeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeC---
Confidence 4677666543321 134678999999987663222 78999986653 478999999999999963
Q ss_pred cHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 83 DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 83 ~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
....++.+.+.+.|..+..++. ++.+++.++++++.
T Consensus 310 -~~~~~~~i~~~~~g~~~~~~~~---~~~~~i~~l~~~~~ 345 (374)
T cd03817 310 -APGLPDLVADGENGFLFPPGDE---ALAEALLRLLQDPE 345 (374)
T ss_pred -CCChhhheecCceeEEeCCCCH---HHHHHHHHHHhChH
Confidence 3445666777788888874332 89999999998875
No 59
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.47 E-value=5.2e-07 Score=66.53 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=64.2
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecC---------C-hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEe
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHG---------G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVEL 100 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g---------G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~ 100 (124)
..+++.+.+|+++.++... ..+|+++..+ | ..+++||+++|+|+|.-. .....+.+++...|..+
T Consensus 277 l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~----~~g~~E~v~~~~~G~lv 352 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTL----HSGIPELVEADKSGWLV 352 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeC----CCCchhhhcCCCceEEe
Confidence 4578999999998764333 8899988653 3 257899999999999963 33445566666788888
Q ss_pred cCCCCCHHHHHHHHHHHhc-CCC
Q psy10186 101 SYFNITLESIAWATSIVLN-NPR 122 (124)
Q Consensus 101 ~~~~~~~~~l~~~l~~ll~-~~~ 122 (124)
.+. +.+++.++|.++++ |++
T Consensus 353 ~~~--d~~~la~ai~~l~~~d~~ 373 (406)
T PRK15427 353 PEN--DAQALAQRLAAFSQLDTD 373 (406)
T ss_pred CCC--CHHHHHHHHHHHHhCCHH
Confidence 643 68999999999998 764
No 60
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.46 E-value=1.8e-06 Score=61.84 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=64.7
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecC----------ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEe
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHG----------GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVEL 100 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g----------G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~ 100 (124)
...++.+.++++..++... ..+|+++..+ -.++++||+++|+|+|.-+.. .+.+.+.+.+.|..+
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~~~g~~~ 318 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDGETGLLV 318 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecCCeeEEE
Confidence 4678999999987654322 7899988644 257899999999999986543 356666777888888
Q ss_pred cCCCCCHHHHHHHHHHHhcCCC
Q psy10186 101 SYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 101 ~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
.+ .+.+++.+++.++++++.
T Consensus 319 ~~--~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 319 PE--GDVAALAAALGRLLADPD 338 (367)
T ss_pred CC--CCHHHHHHHHHHHHcCHH
Confidence 63 357899999999998764
No 61
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.44 E-value=1.4e-06 Score=61.12 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=64.3
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEec----CChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISH----GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~----gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
.+.++.+.++++..++... ..+|++|+. |..++++||+++|+|+|+.+. ....+.+.+.+.|..+... +
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~~~~~~--~ 327 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGLLVPPG--D 327 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceEEeCCC--C
Confidence 5678999999975553222 789999864 346789999999999999643 4456666667788888632 4
Q ss_pred HHHHHHHHHHHhcCCC
Q psy10186 107 LESIAWATSIVLNNPR 122 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~ 122 (124)
.+++.+++.+++++++
T Consensus 328 ~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 328 PEALAEAILRLLDDPE 343 (374)
T ss_pred HHHHHHHHHHHHcChH
Confidence 8999999999988765
No 62
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.43 E-value=4e-06 Score=61.27 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=62.6
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecCC-----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHGG-----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNI 105 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG-----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~ 105 (124)
...++.+.++++..++... ..+|+++..+. ..+++||+++|+|+|+... ....+.+++...|..+.+ ..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~~~G~~l~~-~~ 329 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEGITGYHLAE-PM 329 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccCCceEEEeC-CC
Confidence 3467889999986554222 88999987553 2678999999999999643 345566666667875431 23
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy10186 106 TLESIAWATSIVLNNPR 122 (124)
Q Consensus 106 ~~~~l~~~l~~ll~~~~ 122 (124)
+.+++.+++.++++|+.
T Consensus 330 d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 330 TSDSIISDINRTLADPE 346 (380)
T ss_pred CHHHHHHHHHHHHcCHH
Confidence 68999999999998864
No 63
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.42 E-value=1.9e-06 Score=61.07 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=61.4
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecCCh---------hhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEec
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHGGV---------NSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~---------~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
..+++.+.++++..++... ..+|++|..... ++++||+++|+|+|+.+....+ ..+.+.+.|..+.
T Consensus 273 ~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~~~~~~g~~~~ 348 (394)
T cd03794 273 GLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELVEEAGAGLVVP 348 (394)
T ss_pred CCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhhccCCcceEeC
Confidence 3568999999986664322 789998865432 3479999999999997655433 3333446777775
Q ss_pred CCCCCHHHHHHHHHHHhcCCC
Q psy10186 102 YFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 102 ~~~~~~~~l~~~l~~ll~~~~ 122 (124)
.+ +.+++.+++.+++.++.
T Consensus 349 ~~--~~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 349 PG--DPEALAAAILELLDDPE 367 (394)
T ss_pred CC--CHHHHHHHHHHHHhChH
Confidence 33 68999999999997764
No 64
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.41 E-value=1.8e-06 Score=61.03 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=61.0
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
..+++.+.++++..++... ..+|+++...- ..+++||+++|+|+|+.+. ....+.+.+ +.|..... +
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~-~~~~~~~~---~ 331 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY-GCGWVVDD---D 331 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc-CceEEeCC---C
Confidence 4578999999996554221 78999887653 5789999999999999643 334444555 77777753 3
Q ss_pred HHHHHHHHHHHhcCCC
Q psy10186 107 LESIAWATSIVLNNPR 122 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~ 122 (124)
.+++.+++.+++++++
T Consensus 332 ~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 332 VDALAAALRRALELPQ 347 (375)
T ss_pred hHHHHHHHHHHHhCHH
Confidence 4899999999988753
No 65
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.40 E-value=2.4e-06 Score=62.95 Aligned_cols=85 Identities=20% Similarity=0.274 Sum_probs=63.3
Q ss_pred CCcEEEeeccChHHhh---cCCCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCC
Q psy10186 33 PGNVHIRKWIPQQDVL---AHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNI 105 (124)
Q Consensus 33 ~~~v~~~~~~~~~~~l---~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~ 105 (124)
..++.+.++++..++. ....+|+++..+- ..+++||+++|+|+|.- +.....+.+.+.+.|..+.+ ..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas----~vgg~~e~i~~~~~G~l~~~-~~ 362 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIAT----NVGGTPEIVDNGGNGLLLSK-DP 362 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeC----CCCCcHHHhcCCCcEEEeCC-CC
Confidence 4578999999976533 2245788876663 46899999999999984 34445666766668888763 33
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy10186 106 TLESIAWATSIVLNNPR 122 (124)
Q Consensus 106 ~~~~l~~~l~~ll~~~~ 122 (124)
+.+++.++|.++++|+.
T Consensus 363 ~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 363 TPNELVSSLSKFIDNEE 379 (407)
T ss_pred CHHHHHHHHHHHHhCHH
Confidence 68999999999998764
No 66
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.35 E-value=6.5e-06 Score=57.92 Aligned_cols=85 Identities=24% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEec----CChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISH----GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~----gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
..+++.+.++++..++... ..||+++.. |..++++||+++|+|+|+-+. ....+.+.+.+.|..+.+ .+
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~~~g~~~~~--~~ 330 (377)
T cd03798 257 LEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDGENGLLVPP--GD 330 (377)
T ss_pred CcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCCcceeEECC--CC
Confidence 4578999999987653322 789998855 346789999999999998643 334556666677777753 36
Q ss_pred HHHHHHHHHHHhcCCC
Q psy10186 107 LESIAWATSIVLNNPR 122 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~ 122 (124)
.+++.+++.++++++.
T Consensus 331 ~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 331 PEALAEAILRLLADPW 346 (377)
T ss_pred HHHHHHHHHHHhcCcH
Confidence 8899999999998764
No 67
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.34 E-value=4.2e-06 Score=58.68 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=60.6
Q ss_pred CCcEEEeeccCh-HHhhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCH
Q psy10186 33 PGNVHIRKWIPQ-QDVLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL 107 (124)
Q Consensus 33 ~~~v~~~~~~~~-~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 107 (124)
..++.+.++... .+++ ..+|+++..+. .++++||+++|+|+|.-+.. ...+.+.+.+.|..+.. -+.
T Consensus 245 ~~~v~~~g~~~~~~~~~--~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~~~g~~~~~--~~~ 316 (359)
T cd03808 245 EGRVEFLGFRDDVPELL--AAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDGVNGFLVPP--GDA 316 (359)
T ss_pred cceEEEeeccccHHHHH--HhccEEEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcCcceEEECC--CCH
Confidence 457888887543 3455 78999997764 57899999999999996433 34455666678887753 258
Q ss_pred HHHHHHHHHHhcCCC
Q psy10186 108 ESIAWATSIVLNNPR 122 (124)
Q Consensus 108 ~~l~~~l~~ll~~~~ 122 (124)
+++.+++.+++.++.
T Consensus 317 ~~~~~~i~~l~~~~~ 331 (359)
T cd03808 317 EALADAIERLIEDPE 331 (359)
T ss_pred HHHHHHHHHHHhCHH
Confidence 899999999887764
No 68
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.33 E-value=6.4e-06 Score=58.50 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=62.0
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEec----------CChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEe
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISH----------GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVEL 100 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~----------gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~ 100 (124)
.++++.+.++++..++... ..+|+++.. |...+++||+++|+|+|+.+... ..+.+.+...|..+
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~~ 309 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLLV 309 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEEe
Confidence 4578999999986553332 789998884 33478999999999999864322 23345555588877
Q ss_pred cCCCCCHHHHHHHHHHHhcCCC
Q psy10186 101 SYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 101 ~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
.++ +.+++.+++.++++++.
T Consensus 310 ~~~--~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 310 PPG--DPEALADAIERLLDDPE 329 (355)
T ss_pred CCC--CHHHHHHHHHHHHhCHH
Confidence 532 68999999999987764
No 69
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.33 E-value=9.1e-06 Score=57.92 Aligned_cols=84 Identities=17% Similarity=0.036 Sum_probs=60.4
Q ss_pred CCCcEEEeeccCh-HHhhcCCCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQ-QDVLAHPNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
..+++.+.++..+ .+++ ..||+++... -..+++||+++|+|+|.-.. ....+.+.+ +.+..... -+
T Consensus 247 ~~~~v~~~g~~~~~~~~~--~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~----~~~~~~i~~-~~~~~~~~--~~ 317 (358)
T cd03812 247 LEDKVIFLGVRNDVPELL--QAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDT----ITKEVDLTD-LVKFLSLD--ES 317 (358)
T ss_pred CCCcEEEecccCCHHHHH--HhcCEEEecccccCCCHHHHHHHHhCCCEEEEcC----Cchhhhhcc-CccEEeCC--CC
Confidence 4578888887544 4455 7899998764 35789999999999998533 334445555 45554432 24
Q ss_pred HHHHHHHHHHHhcCCCCC
Q psy10186 107 LESIAWATSIVLNNPRRY 124 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~~r 124 (124)
.+++++++.+++++|..+
T Consensus 318 ~~~~a~~i~~l~~~~~~~ 335 (358)
T cd03812 318 PEIWAEEILKLKSEDRRE 335 (358)
T ss_pred HHHHHHHHHHHHhCcchh
Confidence 799999999999998753
No 70
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=1.5e-05 Score=58.53 Aligned_cols=113 Identities=21% Similarity=0.302 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceE------EecCChhhHHHHHHhCCCee
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLF------ISHGGVNSALEAIHYGIPII 76 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------i~~gG~~t~~ea~~~g~P~l 76 (124)
+|.+.++.+.+.+.|..+.-.-..+ ......++.+.+-+-.+-++. .-+|+. +.+||+| .+|++++|+|+|
T Consensus 270 pERf~~v~~l~~~~gl~~~~rS~~~-~~~~~tdV~l~DtmGEL~l~y-~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi 346 (419)
T COG1519 270 PERFKAVENLLKRKGLSVTRRSQGD-PPFSDTDVLLGDTMGELGLLY-GIADIAFVGGSLVPIGGHN-PLEPAAFGTPVI 346 (419)
T ss_pred hhhHHHHHHHHHHcCCeEEeecCCC-CCCCCCcEEEEecHhHHHHHH-hhccEEEECCcccCCCCCC-hhhHHHcCCCEE
Confidence 4566666666666666554332221 222344788888665544443 677774 3466775 999999999999
Q ss_pred eecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 77 GVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 77 ~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
..|...+|...++.+.+.|+++.+. +.+.+.+++..++.|+.
T Consensus 347 ~Gp~~~Nf~ei~~~l~~~ga~~~v~----~~~~l~~~v~~l~~~~~ 388 (419)
T COG1519 347 FGPYTFNFSDIAERLLQAGAGLQVE----DADLLAKAVELLLADED 388 (419)
T ss_pred eCCccccHHHHHHHHHhcCCeEEEC----CHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999998 58888888888877653
No 71
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.32 E-value=6.2e-06 Score=57.60 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=59.5
Q ss_pred CCCcEEEeeccC-hHHhhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcC-ceeEecCCCC
Q psy10186 32 LPGNVHIRKWIP-QQDVLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLG-AGVELSYFNI 105 (124)
Q Consensus 32 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g-~g~~~~~~~~ 105 (124)
...++.+.++.. ...++ ..+|+++..+. .++++||+++|+|+|+.+....+ ..+.+.+ .|..+.. .
T Consensus 233 ~~~~v~~~g~~~~~~~~~--~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~~~~~--~ 304 (348)
T cd03820 233 LEDRVILLGFTKNIEEYY--AKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGLLVPN--G 304 (348)
T ss_pred CCCeEEEcCCcchHHHHH--HhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceEEeCC--C
Confidence 356788887743 34455 78999988763 56899999999999986543322 2233444 7887753 3
Q ss_pred CHHHHHHHHHHHhcCCCC
Q psy10186 106 TLESIAWATSIVLNNPRR 123 (124)
Q Consensus 106 ~~~~l~~~l~~ll~~~~~ 123 (124)
+.+++.+++.+++++++.
T Consensus 305 ~~~~~~~~i~~ll~~~~~ 322 (348)
T cd03820 305 DVEALAEALLRLMEDEEL 322 (348)
T ss_pred CHHHHHHHHHHHHcCHHH
Confidence 579999999999988753
No 72
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.31 E-value=7.2e-06 Score=59.44 Aligned_cols=84 Identities=23% Similarity=0.163 Sum_probs=61.7
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
..+++.+.++++..++... ..+|+++.... ..+++||+++|+|+|..-. ....+.+.+.+.|..+.. +
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~~~g~~~~~---~ 350 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDGETGFLCEP---T 350 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccCCceEEeCC---C
Confidence 3568999999997653221 78999886542 3678999999999999632 234455666667877752 6
Q ss_pred HHHHHHHHHHHhcCCC
Q psy10186 107 LESIAWATSIVLNNPR 122 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~ 122 (124)
.+++.+++.+++++++
T Consensus 351 ~~~~a~~i~~l~~~~~ 366 (392)
T cd03805 351 PEEFAEAMLKLANDPD 366 (392)
T ss_pred HHHHHHHHHHHHhChH
Confidence 8899999999998874
No 73
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.29 E-value=5.3e-06 Score=59.54 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=68.9
Q ss_pred CCCeEEEEEcCCCC---------CCCCCcEEEeeccChHH-hhcCCCcceEEecC----ChhhHHHHHHhCCCeeeeccc
Q psy10186 16 TGLTVLWRYEGDSI---------ENLPGNVHIRKWIPQQD-VLAHPNCRLFISHG----GVNSALEAIHYGIPIIGVPFY 81 (124)
Q Consensus 16 ~~~~~i~~~g~~~~---------~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~ 81 (124)
.+.+++++..+... .+..+++.+.++.+... ++ ..+|+++... ...+++||+++|+|+|+.
T Consensus 226 ~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s--- 300 (371)
T cd04962 226 VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELL--SIADLFLLPSEKESFGLAALEAMACGVPVVAS--- 300 (371)
T ss_pred CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHH--HhcCEEEeCCCcCCCccHHHHHHHcCCCEEEe---
Confidence 35677665443221 12356788888876543 45 7899998664 356999999999999995
Q ss_pred ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 82 GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 82 ~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
+.....+.+.+...|..+.+ .+.+++.+++.++++++.
T Consensus 301 -~~~~~~e~i~~~~~G~~~~~--~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 301 -NAGGIPEVVKHGETGFLVDV--GDVEAMAEYALSLLEDDE 338 (371)
T ss_pred -CCCCchhhhcCCCceEEcCC--CCHHHHHHHHHHHHhCHH
Confidence 33345666666677877753 258889999999887654
No 74
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.25 E-value=7.7e-06 Score=59.78 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=62.1
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
..+++.+.++++..++... ..+|+++... ...+++||+++|+|+|.... ....+.+.+...|..+.+ -+
T Consensus 281 l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~~~g~~~~~--~d 354 (405)
T TIGR03449 281 IADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADGETGLLVDG--HD 354 (405)
T ss_pred CCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccCCceEECCC--CC
Confidence 3468999999987653222 8899988643 24689999999999999643 334455666677887753 36
Q ss_pred HHHHHHHHHHHhcCCC
Q psy10186 107 LESIAWATSIVLNNPR 122 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~ 122 (124)
.+++.+++.++++++.
T Consensus 355 ~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 355 PADWADALARLLDDPR 370 (405)
T ss_pred HHHHHHHHHHHHhCHH
Confidence 8899999999987754
No 75
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.22 E-value=6.4e-06 Score=60.25 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=63.0
Q ss_pred CCcEEEeeccChHHhhcC-CCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCH
Q psy10186 33 PGNVHIRKWIPQQDVLAH-PNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL 107 (124)
Q Consensus 33 ~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 107 (124)
.+++.+.+++|+.++... ..+|+++..+- ..+++|||++|+|+|.. +.....+.+.+...|..+.+. +.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~~~G~lv~~~--d~ 353 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDGENGLLVDFF--DP 353 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccCCceEEcCCC--CH
Confidence 468999999997764322 78999876442 24799999999999995 444556666666678877532 58
Q ss_pred HHHHHHHHHHhcCCC
Q psy10186 108 ESIAWATSIVLNNPR 122 (124)
Q Consensus 108 ~~l~~~l~~ll~~~~ 122 (124)
+++.+++.+++++++
T Consensus 354 ~~la~~i~~ll~~~~ 368 (396)
T cd03818 354 DALAAAVIELLDDPA 368 (396)
T ss_pred HHHHHHHHHHHhCHH
Confidence 999999999998864
No 76
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.22 E-value=1.1e-05 Score=57.59 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=60.2
Q ss_pred CCCcEEEeeccC-hHH---hhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCC
Q psy10186 32 LPGNVHIRKWIP-QQD---VLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYF 103 (124)
Q Consensus 32 ~~~~v~~~~~~~-~~~---~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~ 103 (124)
...++.+.++++ ..+ ++ ..+|+++..+. ..+++||+++|+|+|+.... ...+.+.+.+.|..+..
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~--~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~~~g~~~~~- 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIY--SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHGVTGYLAKP- 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHH--HhCCEEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCCCceEEeCC-
Confidence 456788999998 433 34 78999998653 57899999999999986432 23334444457777652
Q ss_pred CCCHHHHHHHHHHHhcCCC
Q psy10186 104 NITLESIAWATSIVLNNPR 122 (124)
Q Consensus 104 ~~~~~~l~~~l~~ll~~~~ 122 (124)
.+.+++.+++.++++++.
T Consensus 315 -~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 315 -GDPEDLAEGIEWLLADPD 332 (365)
T ss_pred -CCHHHHHHHHHHHHhCHH
Confidence 368899999999998764
No 77
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.20 E-value=1e-05 Score=57.60 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=63.1
Q ss_pred CCeEEEEEcCCCC---------CCCCCcEEEeeccCh-HHhhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecccc
Q psy10186 17 GLTVLWRYEGDSI---------ENLPGNVHIRKWIPQ-QDVLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYG 82 (124)
Q Consensus 17 ~~~~i~~~g~~~~---------~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~ 82 (124)
+++++++.++... .+..+++.+.++... .+++ ..+|+++.... .++++||+++|+|+|+.
T Consensus 219 ~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~---- 292 (360)
T cd04951 219 DIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYY--NAADLFVLSSAWEGFGLVVAEAMACELPVVAT---- 292 (360)
T ss_pred CeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHH--HhhceEEecccccCCChHHHHHHHcCCCEEEe----
Confidence 4677766543321 124568888887754 3455 78999888764 57899999999999985
Q ss_pred cHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 83 DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 83 ~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
+.....+.+++ .|..+.. .+.+++.+++.++++
T Consensus 293 ~~~~~~e~i~~--~g~~~~~--~~~~~~~~~i~~ll~ 325 (360)
T cd04951 293 DAGGVREVVGD--SGLIVPI--SDPEALANKIDEILK 325 (360)
T ss_pred cCCChhhEecC--CceEeCC--CCHHHHHHHHHHHHh
Confidence 33445555555 3444432 378899999999984
No 78
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.20 E-value=3.2e-05 Score=55.05 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=56.6
Q ss_pred CCCcEEEeeccCh-HHhhcCCCcceEEecC-----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCC
Q psy10186 32 LPGNVHIRKWIPQ-QDVLAHPNCRLFISHG-----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNI 105 (124)
Q Consensus 32 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~~g-----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~ 105 (124)
..+++.+.++.+. ..++ ..+|++++.+ ...+++||+++|+|+|+. +-....+.+.+.+.|..+.. -
T Consensus 244 ~~~~v~~~g~~~~~~~~l--~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~----~~~~~~e~i~~~~~g~~~~~--~ 315 (355)
T cd03819 244 LQDRVTFVGHCSDMPAAY--ALADIVVSASTEPEAFGRTAVEAQAMGRPVIAS----DHGGARETVRPGETGLLVPP--G 315 (355)
T ss_pred CcceEEEcCCcccHHHHH--HhCCEEEecCCCCCCCchHHHHHHhcCCCEEEc----CCCCcHHHHhCCCceEEeCC--C
Confidence 3567999988554 3344 7899988766 246899999999999985 33344556666668888753 3
Q ss_pred CHHHHHHHHHHHh
Q psy10186 106 TLESIAWATSIVL 118 (124)
Q Consensus 106 ~~~~l~~~l~~ll 118 (124)
+.+++.+++..++
T Consensus 316 ~~~~l~~~i~~~~ 328 (355)
T cd03819 316 DAEALAQALDQIL 328 (355)
T ss_pred CHHHHHHHHHHHH
Confidence 6888999886554
No 79
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.19 E-value=5.1e-06 Score=60.04 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=58.8
Q ss_pred CCcEEEeeccCh-HHhhcCCCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCH
Q psy10186 33 PGNVHIRKWIPQ-QDVLAHPNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL 107 (124)
Q Consensus 33 ~~~v~~~~~~~~-~~~l~~~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 107 (124)
..++.+.++... .+++ ..+|+++..+ -..+++||+++|+|+|+-.. ....+.+.+...|..+.. -+.
T Consensus 254 ~~~v~~~g~~~~~~~~~--~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~~~g~~~~~--~d~ 325 (374)
T TIGR03088 254 AHLVWLPGERDDVPALM--QALDLFVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHGVTGALVPP--GDA 325 (374)
T ss_pred cceEEEcCCcCCHHHHH--HhcCEEEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCCCceEEeCC--CCH
Confidence 456677665443 4455 7899998653 35789999999999999643 335556666667887753 367
Q ss_pred HHHHHHHHHHhcCCC
Q psy10186 108 ESIAWATSIVLNNPR 122 (124)
Q Consensus 108 ~~l~~~l~~ll~~~~ 122 (124)
+++.+++.++++++.
T Consensus 326 ~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 326 VALARALQPYVSDPA 340 (374)
T ss_pred HHHHHHHHHHHhCHH
Confidence 899999999987753
No 80
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.17 E-value=1.1e-05 Score=56.81 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=57.2
Q ss_pred CCCcEEEeeccCh-HHhhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQ-QDVLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
...++.+.+..+. .+++ ..+|+++..+. .++++||+++|+|+|+.. ...+.+.+.+ .|..+..+ +
T Consensus 249 ~~~~v~~~g~~~~~~~~~--~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~--~g~~~~~~--~ 318 (365)
T cd03807 249 LEDKVILLGERSDVPALL--NALDVFVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD--TGFLVPPG--D 318 (365)
T ss_pred CCceEEEccccccHHHHH--HhCCEEEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc--CCEEeCCC--C
Confidence 3456777765543 3455 78999998764 479999999999999853 3334555554 56666432 5
Q ss_pred HHHHHHHHHHHhcCCC
Q psy10186 107 LESIAWATSIVLNNPR 122 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~ 122 (124)
.+++.+++.++++++.
T Consensus 319 ~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 319 PEALAEAIEALLADPA 334 (365)
T ss_pred HHHHHHHHHHHHhChH
Confidence 8899999999988754
No 81
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.15 E-value=1.3e-05 Score=59.30 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=58.5
Q ss_pred CcEEEe-eccChHHhhcC-CCcceEEec----CC---hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCC
Q psy10186 34 GNVHIR-KWIPQQDVLAH-PNCRLFISH----GG---VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFN 104 (124)
Q Consensus 34 ~~v~~~-~~~~~~~~l~~-~~~d~~i~~----gG---~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~ 104 (124)
+++.+. +|++..++... ..+|++++. .| ..+++||+++|+|+|+. +.....+.+++.+.|..+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s----~~~~~~eiv~~~~~G~lv~--- 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAL----DFKCIDELVKHGENGLVFG--- 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEe----CCCCHHHHhcCCCCEEEEC---
Confidence 355544 68886664322 789998841 12 35799999999999995 3345667777778898884
Q ss_pred CCHHHHHHHHHHHhcC
Q psy10186 105 ITLESIAWATSIVLNN 120 (124)
Q Consensus 105 ~~~~~l~~~l~~ll~~ 120 (124)
+.+++++++.+++++
T Consensus 367 -d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 -DSEELAEQLIDLLSN 381 (415)
T ss_pred -CHHHHHHHHHHHHhc
Confidence 789999999999987
No 82
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.13 E-value=1.5e-05 Score=57.71 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=72.3
Q ss_pred HHHHHHHHhhC--CCeEEEEEcCCCCC-----------C---CCCcEEEe-eccChHHhhcC-CCcceEEecC----Chh
Q psy10186 6 RTLLVTAFSRT--GLTVLWRYEGDSIE-----------N---LPGNVHIR-KWIPQQDVLAH-PNCRLFISHG----GVN 63 (124)
Q Consensus 6 ~~~~~~~l~~~--~~~~i~~~g~~~~~-----------~---~~~~v~~~-~~~~~~~~l~~-~~~d~~i~~g----G~~ 63 (124)
+..+++++... +.+++++.++.... . ...++.+. ++++..++... ..+|+++..+ ...
T Consensus 216 ~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~ 295 (388)
T TIGR02149 216 VPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGI 295 (388)
T ss_pred HHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCCh
Confidence 45566666554 45666655442210 1 12345543 56776543222 7899998764 245
Q ss_pred hHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC----HHHHHHHHHHHhcCCC
Q psy10186 64 SALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT----LESIAWATSIVLNNPR 122 (124)
Q Consensus 64 t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~----~~~l~~~l~~ll~~~~ 122 (124)
+++||+++|+|+|+.. .....+.+++.+.|..+.+++.+ .+++.+++.++++++.
T Consensus 296 ~~lEA~a~G~PvI~s~----~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 354 (388)
T TIGR02149 296 VNLEAMACGTPVVASA----TGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPE 354 (388)
T ss_pred HHHHHHHcCCCEEEeC----CCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHH
Confidence 7899999999999863 33456667777788888754432 2789999999987764
No 83
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.13 E-value=1.5e-05 Score=56.31 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=72.8
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC-------CC---CCCcEEEeeccChHHhhcC-CCcceEEecC----C-hhhHHHHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI-------EN---LPGNVHIRKWIPQQDVLAH-PNCRLFISHG----G-VNSALEAI 69 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~-------~~---~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g----G-~~t~~ea~ 69 (124)
...+++++.+.+.++++..+.... .. ..+++.+.++++..++... ..+|+++... | ..+++||+
T Consensus 186 ~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAm 265 (335)
T cd03802 186 PHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAM 265 (335)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHH
Confidence 455677777778888766544321 11 2578999999987653221 7889987543 2 35899999
Q ss_pred HhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 70 HYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 70 ~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
++|+|+|.-. .....+.+.+...|..+. ..+++.+++.++..
T Consensus 266 a~G~PvI~~~----~~~~~e~i~~~~~g~l~~----~~~~l~~~l~~l~~ 307 (335)
T cd03802 266 ACGTPVIAFR----RGAVPEVVEDGVTGFLVD----SVEELAAAVARADR 307 (335)
T ss_pred hcCCCEEEeC----CCCchhheeCCCcEEEeC----CHHHHHHHHHHHhc
Confidence 9999999863 334445555555788876 38889999988754
No 84
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.11 E-value=3.3e-05 Score=54.74 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=60.0
Q ss_pred CCCcEEEeec-cChHHhhcC-CCcceEEec------CChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCC
Q psy10186 32 LPGNVHIRKW-IPQQDVLAH-PNCRLFISH------GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYF 103 (124)
Q Consensus 32 ~~~~v~~~~~-~~~~~~l~~-~~~d~~i~~------gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~ 103 (124)
..+++.+.+. ++..++... ..+|+++.. +..++++||+++|+|+|..+... ...+.+.+.|..+..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~~ 319 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPPG 319 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcCC
Confidence 3467887764 876543322 889998854 33468999999999999865433 4445566778877643
Q ss_pred CCCHHHHHHHHHHHhcCCC
Q psy10186 104 NITLESIAWATSIVLNNPR 122 (124)
Q Consensus 104 ~~~~~~l~~~l~~ll~~~~ 122 (124)
+.+++.+++.++++++.
T Consensus 320 --d~~~~~~~l~~l~~~~~ 336 (366)
T cd03822 320 --DPAALAEAIRRLLADPE 336 (366)
T ss_pred --CHHHHHHHHHHHHcChH
Confidence 48899999999998753
No 85
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.06 E-value=4.8e-06 Score=59.05 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=57.3
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
...++.+.++++..++... ..+|+++..+ ...+++||+++|+|+|+-.... ..+.+. ..|..+..+ +
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~--~~~~~~~~~--~ 322 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG--DAALYFDPL--D 322 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec--CceeeeCCC--C
Confidence 5678999999987653322 7899987653 3468999999999999853321 122222 234444322 6
Q ss_pred HHHHHHHHHHHhcCCCC
Q psy10186 107 LESIAWATSIVLNNPRR 123 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~~ 123 (124)
.+++.+++.+++.++..
T Consensus 323 ~~~~~~~i~~l~~~~~~ 339 (365)
T cd03809 323 PEALAAAIERLLEDPAL 339 (365)
T ss_pred HHHHHHHHHHHhcCHHH
Confidence 89999999999887653
No 86
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.04 E-value=6.4e-05 Score=52.50 Aligned_cols=83 Identities=23% Similarity=0.254 Sum_probs=58.2
Q ss_pred CCCcEEEeeccChH-HhhcCCCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQ-DVLAHPNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
..+++.+.++.+.. +++ ..+|++|... ..++++||+++|+|+|+. +-....+.+.+...|..+.++ +
T Consensus 244 ~~~~v~~~g~~~~~~~~~--~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~----~~~~~~e~i~~~~~g~~~~~~--~ 315 (353)
T cd03811 244 LADRVHFLGFQSNPYPYL--KAADLFVLSSRYEGFPNVLLEAMALGTPVVAT----DCPGPREILEDGENGLLVPVG--D 315 (353)
T ss_pred CCccEEEecccCCHHHHH--HhCCEEEeCcccCCCCcHHHHHHHhCCCEEEc----CCCChHHHhcCCCceEEECCC--C
Confidence 45688888887653 345 7899988654 357899999999999985 333566777778889888643 4
Q ss_pred HHHH---HHHHHHHhcCCC
Q psy10186 107 LESI---AWATSIVLNNPR 122 (124)
Q Consensus 107 ~~~l---~~~l~~ll~~~~ 122 (124)
.+.+ .+.+.++..++.
T Consensus 316 ~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 316 EAALAAAALALLDLLLDPE 334 (353)
T ss_pred HHHHHHHHHHHHhccCChH
Confidence 5555 555555555543
No 87
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.01 E-value=4.1e-05 Score=56.09 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=56.9
Q ss_pred CCcEEEeeccChHHhhcCCCcceEEecC----Ch-hhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCH
Q psy10186 33 PGNVHIRKWIPQQDVLAHPNCRLFISHG----GV-NSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL 107 (124)
Q Consensus 33 ~~~v~~~~~~~~~~~l~~~~~d~~i~~g----G~-~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 107 (124)
.+++.+.++++...-+. ..+|++|... |. +.++||+++|+|+|+.+...+.. .+..|.|..+. .+.
T Consensus 279 ~~~V~~~G~v~~~~~~~-~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---~~~ 349 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYL-AHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---ADP 349 (397)
T ss_pred CCCeEEeeecCCHHHHH-HhCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC---CCH
Confidence 46799999988544332 7899987432 33 36999999999999975432211 12235676663 278
Q ss_pred HHHHHHHHHHhcCCC
Q psy10186 108 ESIAWATSIVLNNPR 122 (124)
Q Consensus 108 ~~l~~~l~~ll~~~~ 122 (124)
+++.+++.++++|+.
T Consensus 350 ~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 350 ADFAAAILALLANPA 364 (397)
T ss_pred HHHHHHHHHHHcCHH
Confidence 999999999998764
No 88
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.01 E-value=1.7e-05 Score=58.98 Aligned_cols=85 Identities=26% Similarity=0.273 Sum_probs=61.1
Q ss_pred CCCcEEEeeccChHHhhcC-CC----cceEEecC---C-hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PN----CRLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSY 102 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~----~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~ 102 (124)
..+++.+.++++..++... .. +|+++..+ | ..+++||+++|+|+|+- +.....+.+.+...|..+.+
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s----~~gg~~eiv~~~~~G~lv~~ 390 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVAT----DDGGPRDIIANCRNGLLVDV 390 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEe----CCCCcHHHhcCCCcEEEeCC
Confidence 3467888888776554221 33 48988765 3 46899999999999996 33445566666667888764
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q psy10186 103 FNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 103 ~~~~~~~l~~~l~~ll~~~~ 122 (124)
. +.+++.+++.++++++.
T Consensus 391 ~--d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 391 L--DLEAIASALEDALSDSS 408 (439)
T ss_pred C--CHHHHHHHHHHHHhCHH
Confidence 3 58899999999988764
No 89
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.01 E-value=4e-05 Score=55.55 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=56.9
Q ss_pred CCCcEEEeecc--ChHH---hhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecC
Q psy10186 32 LPGNVHIRKWI--PQQD---VLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSY 102 (124)
Q Consensus 32 ~~~~v~~~~~~--~~~~---~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~ 102 (124)
..+++.+.++. +..+ ++ ..+|+++..+- ..+++||+++|+|+|+.... ...+.+.+...|..+.
T Consensus 250 ~~~~v~~~~~~~~~~~~~~~~~--~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~~~g~~~~- 322 (372)
T cd03792 250 GDPDIHVLTLPPVSDLEVNALQ--RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDGETGFLVD- 322 (372)
T ss_pred CCCCeEEEecCCCCHHHHHHHH--HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccCCceEEeC-
Confidence 34578888876 4433 34 78999987663 35899999999999986432 3344566666777765
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q psy10186 103 FNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 103 ~~~~~~~l~~~l~~ll~~~~ 122 (124)
+.+++..++.+++++++
T Consensus 323 ---~~~~~a~~i~~ll~~~~ 339 (372)
T cd03792 323 ---TVEEAAVRILYLLRDPE 339 (372)
T ss_pred ---CcHHHHHHHHHHHcCHH
Confidence 45677778888887764
No 90
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.99 E-value=9.9e-05 Score=55.54 Aligned_cols=83 Identities=25% Similarity=0.303 Sum_probs=62.0
Q ss_pred CCCcEEEeeccChHHhhcCCCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHc------CceeEec
Q psy10186 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDL------GAGVELS 101 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~------g~g~~~~ 101 (124)
..+++.+.+..+..+++ ..+|+++..+ -..+++||+++|+|+|.- +.....+.+.+. ..|..+.
T Consensus 352 l~~~V~f~G~~~v~~~l--~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 352 LEDNVKFTGFQNVKEYL--PKLDVLVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVP 425 (475)
T ss_pred CCCeEEEcCCccHHHHH--HhCCEEEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEEC
Confidence 45789999866667777 7899988665 347899999999999994 434445555552 3677775
Q ss_pred CCCCCHHHHHHHHHHHhcCCC
Q psy10186 102 YFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 102 ~~~~~~~~l~~~l~~ll~~~~ 122 (124)
+ .+.+++.+++.++++|+.
T Consensus 426 ~--~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 426 P--ADPEALARAILRLLKDPE 444 (475)
T ss_pred C--CCHHHHHHHHHHHhcCHH
Confidence 3 368999999999998764
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.99 E-value=8.8e-05 Score=58.33 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=61.7
Q ss_pred CCCcEEEeeccChHHhhcCCCcceEEecC---C-hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCH
Q psy10186 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL 107 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 107 (124)
..++|.+.+|.+....+. ..+|+++..+ | .++++||+++|+|+|.... ....+.+.+...|..+.+++.+.
T Consensus 572 L~~~V~flG~~~dv~~ll-~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg~~GlLv~~~d~~~ 646 (694)
T PRK15179 572 MGERILFTGLSRRVGYWL-TQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEGVTGLTLPADTVTA 646 (694)
T ss_pred CCCcEEEcCCcchHHHHH-HhcCEEEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCCCCEEEeCCCCCCh
Confidence 457899999987544333 7899988743 3 4789999999999999633 34556666667899988777677
Q ss_pred HHHHHHHHHHhcC
Q psy10186 108 ESIAWATSIVLNN 120 (124)
Q Consensus 108 ~~l~~~l~~ll~~ 120 (124)
+++.+++.+++.+
T Consensus 647 ~~La~aL~~ll~~ 659 (694)
T PRK15179 647 PDVAEALARIHDM 659 (694)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776643
No 92
>PLN02275 transferase, transferring glycosyl groups
Probab=97.98 E-value=4.3e-05 Score=55.69 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=55.7
Q ss_pred CcEEEee-ccChHHhhcC-CCcceEEec--C--C---hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCC
Q psy10186 34 GNVHIRK-WIPQQDVLAH-PNCRLFISH--G--G---VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFN 104 (124)
Q Consensus 34 ~~v~~~~-~~~~~~~l~~-~~~d~~i~~--g--G---~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~ 104 (124)
+|+.+.. |++..++-.. ..+|+++.. . | .++++||+++|+|+|... .....+.+++.+.|..+.
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~----~gg~~eiv~~g~~G~lv~--- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIGELVKDGKNGLLFS--- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEec----CCChHHHccCCCCeEEEC---
Confidence 4566655 6887664222 889998842 1 1 357999999999999963 334667777778899886
Q ss_pred CCHHHHHHHHHHHh
Q psy10186 105 ITLESIAWATSIVL 118 (124)
Q Consensus 105 ~~~~~l~~~l~~ll 118 (124)
+.+++.+++.+++
T Consensus 359 -~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -SSSELADQLLELL 371 (371)
T ss_pred -CHHHHHHHHHHhC
Confidence 5889999998874
No 93
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.96 E-value=6.5e-05 Score=55.05 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=55.9
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecC---C-hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
..+++.+.++++..++... ..+|+++..+ | ..+++||+++|+|+|+-+..+ ..+.+.+ |.+....+ +
T Consensus 248 l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~-~~~~~~~~---~ 319 (398)
T cd03796 248 LQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP-DMILLAEP---D 319 (398)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC-CceeecCC---C
Confidence 3567999999986553332 8899998765 2 248999999999999864432 2333333 33433322 6
Q ss_pred HHHHHHHHHHHhcCC
Q psy10186 107 LESIAWATSIVLNNP 121 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~ 121 (124)
.+++.+++.++++++
T Consensus 320 ~~~l~~~l~~~l~~~ 334 (398)
T cd03796 320 VESIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHHHHHhCh
Confidence 788999999888753
No 94
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.93 E-value=6.4e-05 Score=55.23 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=56.5
Q ss_pred CcEEEeeccChHHhhcC-CCcceEEecC--C------hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCC
Q psy10186 34 GNVHIRKWIPQQDVLAH-PNCRLFISHG--G------VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFN 104 (124)
Q Consensus 34 ~~v~~~~~~~~~~~l~~-~~~d~~i~~g--G------~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~ 104 (124)
+++.+.++++..++... ..+|+++... + .+.+.|++++|+|+|+....+.. ..+.+. +.|..+.+
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~-- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEP-- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCC--
Confidence 47999999987654222 7888865432 1 12368999999999997543321 122333 67888753
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy10186 105 ITLESIAWATSIVLNNPR 122 (124)
Q Consensus 105 ~~~~~l~~~l~~ll~~~~ 122 (124)
-+.+++.++|.++++++.
T Consensus 358 ~d~~~la~~i~~l~~~~~ 375 (412)
T PRK10307 358 ESVEALVAAIAALARQAL 375 (412)
T ss_pred CCHHHHHHHHHHHHhCHH
Confidence 358899999999988764
No 95
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.91 E-value=2.4e-05 Score=48.59 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=53.9
Q ss_pred CCeEEEEEcCCC-CCCC-CCcEEEeeccChH-HhhcCCCcceEEecC-----ChhhHHHHHHhCCCeeeecccccHHHHH
Q psy10186 17 GLTVLWRYEGDS-IENL-PGNVHIRKWIPQQ-DVLAHPNCRLFISHG-----GVNSALEAIHYGIPIIGVPFYGDQLSHV 88 (124)
Q Consensus 17 ~~~~i~~~g~~~-~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~~g-----G~~t~~ea~~~g~P~l~~P~~~~q~~~a 88 (124)
+.++++..+..+ ..+. .+++++.++++.. +.+ ..||+++... ..+++.|++++|+|+|+.+. ...
T Consensus 34 ~~~l~i~G~~~~~l~~~~~~~v~~~g~~~e~~~~l--~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~ 106 (135)
T PF13692_consen 34 DIELIIIGNGPDELKRLRRPNVRFHGFVEELPEIL--AAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAE 106 (135)
T ss_dssp TEEEEEECESS-HHCCHHHCTEEEE-S-HHHHHHH--HC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCH
T ss_pred CEEEEEEeCCHHHHHHhcCCCEEEcCCHHHHHHHH--HhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chh
Confidence 356655443222 2232 5699999998532 234 7799977643 24789999999999999643 233
Q ss_pred HHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 89 RHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 89 ~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
...+..+.+..+. -+.+++.++++++++|
T Consensus 107 ~~~~~~~~~~~~~---~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 107 GIVEEDGCGVLVA---NDPEELAEAIERLLND 135 (135)
T ss_dssp CHS---SEEEE-T---T-HHHHHHHHHHHHH-
T ss_pred hheeecCCeEEEC---CCHHHHHHHHHHHhcC
Confidence 3444467776662 2799999999999875
No 96
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.89 E-value=0.00016 Score=52.14 Aligned_cols=84 Identities=23% Similarity=0.250 Sum_probs=61.0
Q ss_pred CCCcEEEeeccChH-HhhcCCCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 32 LPGNVHIRKWIPQQ-DVLAHPNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 32 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
.+.++.+.++.+.. .++ ..+|++|..+ ...+++||+++|+|+|+..... .....+.+...|..+.+ .+
T Consensus 259 ~~~~v~~~g~~~~~~~~~--~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~--~d 331 (372)
T cd04949 259 LEDYVFLKGYTRDLDEVY--QKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPK--GD 331 (372)
T ss_pred CcceEEEcCCCCCHHHHH--hhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCC--Cc
Confidence 45678888866543 345 7899987665 2468999999999999963221 24455666678888863 36
Q ss_pred HHHHHHHHHHHhcCCC
Q psy10186 107 LESIAWATSIVLNNPR 122 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~~ 122 (124)
.+++.++|.+++.++.
T Consensus 332 ~~~la~~i~~ll~~~~ 347 (372)
T cd04949 332 IEALAEAIIELLNDPK 347 (372)
T ss_pred HHHHHHHHHHHHcCHH
Confidence 8999999999998864
No 97
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.88 E-value=0.00021 Score=52.22 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCC---------CC---CCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHH
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDSI---------EN---LPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAI 69 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~~---------~~---~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~ 69 (124)
.+.+.++++++.+.+.+++++...... .+ ..+++.+.+.++..+++.. ..|+++|+-++.+. .||.
T Consensus 219 ~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi-~EA~ 297 (365)
T TIGR03568 219 EEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGI-IEAP 297 (365)
T ss_pred hHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcChhHH-Hhhh
Confidence 456888999998876555555432211 00 1468999988776664333 88999999997765 9999
Q ss_pred HhCCCeeeecccccHHHHHHHHHHcCce-eEecCCCCCHHHHHHHHHHHhc
Q psy10186 70 HYGIPIIGVPFYGDQLSHVRHIVDLGAG-VELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 70 ~~g~P~l~~P~~~~q~~~a~~~~~~g~g-~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
+.|+|+|.+- +.. + ..+.|.. +.+. .+.+++.++++++++
T Consensus 298 ~lg~Pvv~l~---~R~---e-~~~~g~nvl~vg---~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 298 SFGVPTINIG---TRQ---K-GRLRADSVIDVD---PDKEEIVKAIEKLLD 338 (365)
T ss_pred hcCCCEEeec---CCc---h-hhhhcCeEEEeC---CCHHHHHHHHHHHhC
Confidence 9999999873 211 1 1122333 3343 368889999988543
No 98
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.87 E-value=0.0002 Score=54.38 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=62.1
Q ss_pred CCCcEEEeeccChHHhhcCCCcceEEecC---C-hhhHHHHHHhCCCeeeecccccHH-HHHHHHHHcCceeEecCC--C
Q psy10186 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQL-SHVRHIVDLGAGVELSYF--N 104 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~-~~a~~~~~~g~g~~~~~~--~ 104 (124)
..+++.+.++.+..+++ ..+|+++..+ | ..+++||+++|+|+|.. +-. ...+.+++...|..+... .
T Consensus 374 l~~~V~f~G~~~~~~~~--~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~----dv~~G~~eiI~~g~nG~lv~~~~~~ 447 (500)
T TIGR02918 374 AQDYIHLKGHRNLSEVY--KDYELYLSASTSEGFGLTLMEAVGSGLGMIGF----DVNYGNPTFIEDNKNGYLIPIDEEE 447 (500)
T ss_pred CCCeEEEcCCCCHHHHH--HhCCEEEEcCccccccHHHHHHHHhCCCEEEe----cCCCCCHHHccCCCCEEEEeCCccc
Confidence 35678999998888888 7899998766 2 47899999999999996 332 355666666788888632 1
Q ss_pred CC----HHHHHHHHHHHhcC
Q psy10186 105 IT----LESIAWATSIVLNN 120 (124)
Q Consensus 105 ~~----~~~l~~~l~~ll~~ 120 (124)
-+ .++++++|.+++++
T Consensus 448 ~d~~~~~~~la~~I~~ll~~ 467 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYFNS 467 (500)
T ss_pred cchhHHHHHHHHHHHHHhCh
Confidence 22 77899999988843
No 99
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.85 E-value=5.3e-05 Score=54.00 Aligned_cols=106 Identities=22% Similarity=0.222 Sum_probs=65.7
Q ss_pred HHHHHHHHhhC--CCeEEEEEcCCCC----------CCCCCcEEEeeccChHHhhcC-CCcceEEecCCh-----hhHHH
Q psy10186 6 RTLLVTAFSRT--GLTVLWRYEGDSI----------ENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGV-----NSALE 67 (124)
Q Consensus 6 ~~~~~~~l~~~--~~~~i~~~g~~~~----------~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~-----~t~~e 67 (124)
+..+++++... +.+++++.+.... ....+++.+.+++++.++... ..+|+++.++-. .+++|
T Consensus 208 ~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~E 287 (363)
T cd04955 208 IDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLE 287 (363)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHH
Confidence 44556666554 3677655543211 124578999999988764332 678888776533 57999
Q ss_pred HHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 68 AIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 68 a~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
|+++|+|+|+..... +.+.+.+ .|..+... +.+.+++.++++++
T Consensus 288 Ama~G~PvI~s~~~~----~~e~~~~--~g~~~~~~----~~l~~~i~~l~~~~ 331 (363)
T cd04955 288 AMAYGCPVLASDNPF----NREVLGD--KAIYFKVG----DDLASLLEELEADP 331 (363)
T ss_pred HHHcCCCEEEecCCc----cceeecC--CeeEecCc----hHHHHHHHHHHhCH
Confidence 999999999864332 1222222 34444422 22888888888765
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.78 E-value=0.00019 Score=53.21 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecC---C-hhhHHHHHHhCCCeeeecccccHHHHHHHHH---HcCceeEecCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIV---DLGAGVELSYF 103 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~---~~g~g~~~~~~ 103 (124)
..++|.+.+++|..++... ..+|++++.. | ..+++|||++|+|+|+....+. ....++ +...|....
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g~~G~l~~-- 377 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGGPTGFLAS-- 377 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCCCceEEeC--
Confidence 3568999999987764333 8899988654 1 3588999999999998632221 112222 345777764
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy10186 104 NITLESIAWATSIVLNNP 121 (124)
Q Consensus 104 ~~~~~~l~~~l~~ll~~~ 121 (124)
+.+++.+++.++++++
T Consensus 378 --d~~~la~ai~~ll~~~ 393 (419)
T cd03806 378 --TAEEYAEAIEKILSLS 393 (419)
T ss_pred --CHHHHHHHHHHHHhCC
Confidence 7999999999999865
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.73 E-value=0.0001 Score=53.57 Aligned_cols=108 Identities=17% Similarity=0.240 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhC-CCeEEEEEcCCC---------CCCCCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHHhC
Q psy10186 4 GMRTLLVTAFSRT-GLTVLWRYEGDS---------IENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYG 72 (124)
Q Consensus 4 ~~~~~~~~~l~~~-~~~~i~~~g~~~---------~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~g 72 (124)
..+.++++++.+. ++++||.+.+++ .... +++++++.+++.+.+.. ..|+++|+.+| |-.-||.++|
T Consensus 200 ~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~~a~~vvgdSs-GI~eEa~~lg 277 (346)
T PF02350_consen 200 EQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLKNADLVVGDSS-GIQEEAPSLG 277 (346)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHHHHESEEEESSH-HHHHHGGGGT
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHHhcceEEEEcCc-cHHHHHHHhC
Confidence 3455666666665 789999998543 2234 59999888776553332 78999999999 5444999999
Q ss_pred CCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 73 IPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 73 ~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
+|+|.+=..++... ....|..+.+. .+.+++.+++++.+.+
T Consensus 278 ~P~v~iR~~geRqe----~r~~~~nvlv~---~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 278 KPVVNIRDSGERQE----GRERGSNVLVG---TDPEAIIQAIEKALSD 318 (346)
T ss_dssp --EEECSSS-S-HH----HHHTTSEEEET---SSHHHHHHHHHHHHH-
T ss_pred CeEEEecCCCCCHH----HHhhcceEEeC---CCHHHHHHHHHHHHhC
Confidence 99999833333322 22335555554 4799999999998865
No 102
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.71 E-value=0.00012 Score=55.06 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCC------------CCCCCcEEEeeccChHHhh-cCCCcceEEec---CChhhH
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSI------------ENLPGNVHIRKWIPQQDVL-AHPNCRLFISH---GGVNSA 65 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~------------~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~---gG~~t~ 65 (124)
+++.+..-++-|++.|...+|....... .-.++.+.+.+..+..+-+ .+..+|+++.. +|..|.
T Consensus 298 ~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt 377 (468)
T PF13844_consen 298 SPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTT 377 (468)
T ss_dssp -HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHH
T ss_pred CHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHH
Confidence 5667777788888889888887654321 1135678888887765543 23779998754 488899
Q ss_pred HHHHHhCCCeeeecccc-cHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHh
Q psy10186 66 LEAIHYGIPIIGVPFYG-DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 66 ~ea~~~g~P~l~~P~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll 118 (124)
+||+.+|+|+|..|-.. -...-+..+..+|+...+-. +.++..+.-.++.
T Consensus 378 ~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~---s~~eYv~~Av~La 428 (468)
T PF13844_consen 378 LDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD---SEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S---SHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC---CHHHHHHHHHHHh
Confidence 99999999999997532 34555667788888866643 3444443333333
No 103
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.71 E-value=0.0011 Score=48.40 Aligned_cols=95 Identities=16% Similarity=0.007 Sum_probs=60.4
Q ss_pred CCeEEEEEcC-CC--CC--CCCCcEEEeeccChHHhhcC-CCcceEEecC--------C-hhhHHHHHHhCCCeeeeccc
Q psy10186 17 GLTVLWRYEG-DS--IE--NLPGNVHIRKWIPQQDVLAH-PNCRLFISHG--------G-VNSALEAIHYGIPIIGVPFY 81 (124)
Q Consensus 17 ~~~~i~~~g~-~~--~~--~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g--------G-~~t~~ea~~~g~P~l~~P~~ 81 (124)
+++|+++.+. .. .. ...+|+++.+++|..++-.+ ..+|+++..- + ...++|++++|+|+|..+.
T Consensus 232 ~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~- 310 (373)
T cd04950 232 DWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL- 310 (373)
T ss_pred CCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-
Confidence 4677665543 11 11 12479999999997775433 7899977542 2 2468999999999998642
Q ss_pred ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 82 GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 82 ~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
....+..+.+.... + +.+++.++|++.+.++
T Consensus 311 ------~~~~~~~~~~~~~~--~-d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 311 ------PEVRRYEDEVVLIA--D-DPEEFVAAIEKALLED 341 (373)
T ss_pred ------HHHHhhcCcEEEeC--C-CHHHHHHHHHHHHhcC
Confidence 12222223233332 1 7999999999976443
No 104
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.62 E-value=0.00017 Score=54.09 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=65.3
Q ss_pred HHHHhhCCCeEEEEEcCCC-C--------CCCCCcEEEeeccChHH---hhcCCCcceEEecC---C-hhhHHHHHHhCC
Q psy10186 10 VTAFSRTGLTVLWRYEGDS-I--------ENLPGNVHIRKWIPQQD---VLAHPNCRLFISHG---G-VNSALEAIHYGI 73 (124)
Q Consensus 10 ~~~l~~~~~~~i~~~g~~~-~--------~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~g---G-~~t~~ea~~~g~ 73 (124)
++.+.+.+.+++++.+++. . .+.+.++.+...++... ++ ..+|+++..+ | ..+.+||+++|+
T Consensus 313 ~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~--~~aDv~l~pS~~E~~gl~~lEAma~G~ 390 (473)
T TIGR02095 313 LPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIY--AGADFILMPSRFEPCGLTQLYAMRYGT 390 (473)
T ss_pred HHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH--HhCCEEEeCCCcCCcHHHHHHHHHCCC
Confidence 3334344578776654431 1 12455677666556543 44 8899999775 2 358899999999
Q ss_pred CeeeecccccHHHHHHHHHHc------CceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 74 PIIGVPFYGDQLSHVRHIVDL------GAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 74 P~l~~P~~~~q~~~a~~~~~~------g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
|+|+-.. ....+.+.+. +.|..+.+ .+.+++.+++.+++.
T Consensus 391 pvI~s~~----gg~~e~v~~~~~~~~~~~G~l~~~--~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 391 VPIVRRT----GGLADTVVDGDPEAESGTGFLFEE--YDPGALLAALSRALR 436 (473)
T ss_pred CeEEccC----CCccceEecCCCCCCCCceEEeCC--CCHHHHHHHHHHHHH
Confidence 9998533 2233344443 78888863 357889999888775
No 105
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.62 E-value=0.00014 Score=59.26 Aligned_cols=86 Identities=22% Similarity=0.168 Sum_probs=61.5
Q ss_pred CCCcEEEeeccChHHhhcC-CCc----ceEEecC---C-hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNC----RLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSY 102 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~----d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~ 102 (124)
..++|.+.+++++.++-.. ..+ |+||..+ | ..+++||+++|+|+|.-. .....+.+.....|+.+.+
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASd----vGG~~EII~~g~nGlLVdP 621 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATK----NGGPVDIHRVLDNGLLVDP 621 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeC----CCCcHHHhccCCcEEEECC
Confidence 4567888888876653221 334 6888875 2 368999999999999963 3334455555567888864
Q ss_pred CCCCHHHHHHHHHHHhcCCCC
Q psy10186 103 FNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 103 ~~~~~~~l~~~l~~ll~~~~~ 123 (124)
.+.++++++|.++++++.+
T Consensus 622 --~D~eaLA~AL~~LL~Dpel 640 (1050)
T TIGR02468 622 --HDQQAIADALLKLVADKQL 640 (1050)
T ss_pred --CCHHHHHHHHHHHhhCHHH
Confidence 3588999999999988753
No 106
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.61 E-value=0.0016 Score=47.24 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCC----CCCCcEEE-eeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIE----NLPGNVHI-RKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~----~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~ 78 (124)
+.+.++++.|++.+.. ++...+.... +..+ +.+ ...++..+++ ..||++|+-||. ...||+..|+|+|.+
T Consensus 199 ~i~~~ii~~L~~~~~~-vV~ipr~~~~~~~~~~~~-~~i~~~~vd~~~Ll--~~a~l~Ig~ggT-Ma~EAA~LGtPaIs~ 273 (335)
T PF04007_consen 199 SILPEIIEELEKYGRN-VVIIPRYEDQRELFEKYG-VIIPPEPVDGLDLL--YYADLVIGGGGT-MAREAALLGTPAISC 273 (335)
T ss_pred chHHHHHHHHHhhCce-EEEecCCcchhhHHhccC-ccccCCCCCHHHHH--HhcCEEEeCCcH-HHHHHHHhCCCEEEe
Confidence 4567888999888877 4444433211 1112 333 3445556788 669999999885 688999999999986
Q ss_pred cccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHh
Q psy10186 79 PFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 79 P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll 118 (124)
..++-...-+.+.+.|+-.... +.+++.+.+++..
T Consensus 274 -~~g~~~~vd~~L~~~Gll~~~~----~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 274 -FPGKLLAVDKYLIEKGLLYHST----DPDEIVEYVRKNL 308 (335)
T ss_pred -cCCcchhHHHHHHHCCCeEecC----CHHHHHHHHHHhh
Confidence 2233334456677777744444 6777777776655
No 107
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.59 E-value=0.00034 Score=46.24 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=45.6
Q ss_pred CCeEEEEEcCCCC---------CCCCCcEEEeeccChHH---hhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecc
Q psy10186 17 GLTVLWRYEGDSI---------ENLPGNVHIRKWIPQQD---VLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPF 80 (124)
Q Consensus 17 ~~~~i~~~g~~~~---------~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~ 80 (124)
+.+++++.+.... .....|+.+.++++..+ .+. ..||++++... .++++||+++|+|+|+.+.
T Consensus 135 ~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~ 213 (229)
T cd01635 135 DLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLL-AAADVFVLPSLREGFGLVVLEAMACGLPVIATDV 213 (229)
T ss_pred CeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHh-hcCCEEEecccccCcChHHHHHHhCCCCEEEcCC
Confidence 4677666555431 13467899999863322 231 55999999886 6899999999999999755
Q ss_pred cc
Q psy10186 81 YG 82 (124)
Q Consensus 81 ~~ 82 (124)
..
T Consensus 214 ~~ 215 (229)
T cd01635 214 GG 215 (229)
T ss_pred CC
Confidence 43
No 108
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.56 E-value=6.4e-05 Score=54.62 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=54.4
Q ss_pred ChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeee-cccccHHHHHHHHH---HcCceeEe-------------cCCCC
Q psy10186 43 PQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGV-PFYGDQLSHVRHIV---DLGAGVEL-------------SYFNI 105 (124)
Q Consensus 43 ~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~-P~~~~q~~~a~~~~---~~g~g~~~-------------~~~~~ 105 (124)
+..+++ ..||++|+.+|..|+ |++.+|+|+++. ....-|..||+++. ..|+.-++ -.+++
T Consensus 228 ~~~~~m--~~aDlal~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~ 304 (347)
T PRK14089 228 DTHKAL--LEAEFAFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFV 304 (347)
T ss_pred cHHHHH--HhhhHHHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccC
Confidence 445566 789999999999888 999999999994 22357899999998 45655333 23567
Q ss_pred CHHHHHHHHHH
Q psy10186 106 TLESIAWATSI 116 (124)
Q Consensus 106 ~~~~l~~~l~~ 116 (124)
+.+.+.+.+.+
T Consensus 305 t~~~la~~i~~ 315 (347)
T PRK14089 305 TVENLLKAYKE 315 (347)
T ss_pred CHHHHHHHHHH
Confidence 88888888765
No 109
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.54 E-value=0.00073 Score=50.91 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=53.6
Q ss_pred EeeccChHHhhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHH
Q psy10186 38 IRKWIPQQDVLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWA 113 (124)
Q Consensus 38 ~~~~~~~~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~ 113 (124)
+.++.+..+++ ..+|+|+..+- ..+++||+++|+|+|..-.. .+ +.+.+.+.|.... +.+++.++
T Consensus 288 f~G~~~~~~~~--~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~----~~-~~v~~~~ng~~~~----~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLF--HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP----SN-EFFKQFPNCRTYD----DGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHH--HhCCEEEECCCcccchHHHHHHHHcCCcEEEecCC----Cc-ceeecCCceEecC----CHHHHHHH
Confidence 55666666677 77899998863 46889999999999997332 22 5555566666664 68899999
Q ss_pred HHHHhcCC
Q psy10186 114 TSIVLNNP 121 (124)
Q Consensus 114 l~~ll~~~ 121 (124)
+.+++.++
T Consensus 357 i~~~l~~~ 364 (462)
T PLN02846 357 TLKALAEE 364 (462)
T ss_pred HHHHHccC
Confidence 99988754
No 110
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.47 E-value=0.0011 Score=50.95 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhC-CCeEEEEEcCCCC---------CCCCCcEEEeeccChH-HhhcCCCcceEEecC---C-hhhHHHHH
Q psy10186 5 MRTLLVTAFSRT-GLTVLWRYEGDSI---------ENLPGNVHIRKWIPQQ-DVLAHPNCRLFISHG---G-VNSALEAI 69 (124)
Q Consensus 5 ~~~~~~~~l~~~-~~~~i~~~g~~~~---------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~g---G-~~t~~ea~ 69 (124)
.+..+.+.+... +++++++.++... .+..+++.+.++.+.. +++ ..+|+++..+ | .++++||+
T Consensus 416 LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~L--aaADVfVlPS~~EGfp~vlLEAM 493 (578)
T PRK15490 416 WIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWL--QKMNVFILFSRYEGLPNVLIEAQ 493 (578)
T ss_pred HHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHH--HhCCEEEEcccccCccHHHHHHH
Confidence 344444444444 4566665443221 1245789999986543 344 7899998753 3 56899999
Q ss_pred HhCCCeeeecccccHHHHHHHHHHcCceeEecCC
Q psy10186 70 HYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYF 103 (124)
Q Consensus 70 ~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~ 103 (124)
++|+|+|.. +-..+.+.+.+...|..+.+.
T Consensus 494 A~GlPVVAT----dvGG~~EiV~dG~nG~LVp~~ 523 (578)
T PRK15490 494 MVGVPVIST----PAGGSAECFIEGVSGFILDDA 523 (578)
T ss_pred HhCCCEEEe----CCCCcHHHcccCCcEEEECCC
Confidence 999999985 334556667777788888654
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.47 E-value=0.0014 Score=51.64 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=54.3
Q ss_pred cEEEeeccChHH-hhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHH
Q psy10186 35 NVHIRKWIPQQD-VLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLES 109 (124)
Q Consensus 35 ~v~~~~~~~~~~-~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~ 109 (124)
++.+.++.+... ++ ..+|+||..+- ..+++||+++|+|+|.....+.. .+.+.+.|.... +.++
T Consensus 602 ~V~FLG~~dd~~~ly--asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e-----~V~~g~nGll~~----D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSL--HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNE-----FFRSFPNCLTYK----TSED 670 (794)
T ss_pred EEEecCCCCCHHHHH--HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCc-----eEeecCCeEecC----CHHH
Confidence 466777776553 66 78999988762 46889999999999997444321 122334444332 6899
Q ss_pred HHHHHHHHhcCCC
Q psy10186 110 IAWATSIVLNNPR 122 (124)
Q Consensus 110 l~~~l~~ll~~~~ 122 (124)
+.+++.+++.++.
T Consensus 671 fAeAI~~LLsd~~ 683 (794)
T PLN02501 671 FVAKVKEALANEP 683 (794)
T ss_pred HHHHHHHHHhCch
Confidence 9999999998764
No 112
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.42 E-value=0.00096 Score=53.15 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCcEEEeecc-Ch---HHhhcC--CCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEec
Q psy10186 32 LPGNVHIRKWI-PQ---QDVLAH--PNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 32 ~~~~v~~~~~~-~~---~~~l~~--~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
..+++.+.++. +. .+++.+ ..+|+|+..+ -..+++||+++|+|+|+- +.....+.+.+...|..+.
T Consensus 617 L~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~dg~tGfLVd 692 (784)
T TIGR02470 617 LHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQDGVSGFHID 692 (784)
T ss_pred CCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCCCcEEEeC
Confidence 34678888864 32 234421 3467888776 246899999999999994 5556777777777899886
Q ss_pred CCCCCHHHHHHHHHHHh
Q psy10186 102 YFNITLESIAWATSIVL 118 (124)
Q Consensus 102 ~~~~~~~~l~~~l~~ll 118 (124)
+. +.+++.+++.+++
T Consensus 693 p~--D~eaLA~aL~~ll 707 (784)
T TIGR02470 693 PY--HGEEAAEKIVDFF 707 (784)
T ss_pred CC--CHHHHHHHHHHHH
Confidence 43 5788888888765
No 113
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.40 E-value=0.0015 Score=47.01 Aligned_cols=93 Identities=14% Similarity=0.237 Sum_probs=62.5
Q ss_pred CCeEEEEEcCCC-CCCCCCcEEEeeccChHHhhcC-CCcceEEecCC--------------hhhHHHHHHhCCCeeeecc
Q psy10186 17 GLTVLWRYEGDS-IENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGG--------------VNSALEAIHYGIPIIGVPF 80 (124)
Q Consensus 17 ~~~~i~~~g~~~-~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG--------------~~t~~ea~~~g~P~l~~P~ 80 (124)
+.++++ +|... .....+|+.+.+|++..++..+ ...-+++.-+- .+-+.+.+++|+|+|+.
T Consensus 190 ~~~l~i-~G~g~~~~~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~-- 266 (333)
T PRK09814 190 GIKLTV-FGPNPEDLENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW-- 266 (333)
T ss_pred CCeEEE-ECCCccccccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC--
Confidence 456544 44433 2245679999999998876432 33112222210 12367789999999995
Q ss_pred cccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHh
Q psy10186 81 YGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 81 ~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll 118 (124)
+....++.+++.++|..+. +.+++.+.+.++.
T Consensus 267 --~~~~~~~~V~~~~~G~~v~----~~~el~~~l~~~~ 298 (333)
T PRK09814 267 --SKAAIADFIVENGLGFVVD----SLEELPEIIDNIT 298 (333)
T ss_pred --CCccHHHHHHhCCceEEeC----CHHHHHHHHHhcC
Confidence 5677889999999999997 5678888887653
No 114
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.34 E-value=0.0015 Score=48.46 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCe-EEEEEcCCCCCCCCCcEEEeeccC-h---HHhhcCCCcceEEecCC----hhhHHHHHHhCCCee
Q psy10186 6 RTLLVTAFSRTGLT-VLWRYEGDSIENLPGNVHIRKWIP-Q---QDVLAHPNCRLFISHGG----VNSALEAIHYGIPII 76 (124)
Q Consensus 6 ~~~~~~~l~~~~~~-~i~~~g~~~~~~~~~~v~~~~~~~-~---~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l 76 (124)
+..+++++...+.+ -++++|..+. ....++...++.. . .+++ ..+|++|..+- ..+++||+++|+|+|
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g~~-~~~~~v~~~g~~~~~~~l~~~y--~~aDvfV~pS~~Egfp~vilEAmA~G~PVV 334 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKFSP-FTAGNVVNHGFETDKRKLMSAL--NQMDALVFSSRVDNYPLILCEALSIGVPVI 334 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCCCc-ccccceEEecCcCCHHHHHHHH--HhCCEEEECCccccCcCHHHHHHHcCCCEE
Confidence 45677777765432 2345554322 2345677777763 2 2334 77999998763 468999999999999
Q ss_pred eecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHH
Q psy10186 77 GVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWA 113 (124)
Q Consensus 77 ~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~ 113 (124)
.....+ ..+.+. .+.|..+.+. +.++|++.
T Consensus 335 at~~gG----~~Eiv~-~~~G~lv~~~--d~~~La~~ 364 (405)
T PRK10125 335 ATHSDA----AREVLQ-KSGGKTVSEE--EVLQLAQL 364 (405)
T ss_pred EeCCCC----hHHhEe-CCcEEEECCC--CHHHHHhc
Confidence 974433 333333 3578888654 34555543
No 115
>PHA01633 putative glycosyl transferase group 1
Probab=97.28 E-value=0.0008 Score=48.74 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=54.8
Q ss_pred CCCcEEEee---ccChHHhhcC-CCcceEEecC---C-hhhHHHHHHhCCCeeeeccc------ccH------HHHHHHH
Q psy10186 32 LPGNVHIRK---WIPQQDVLAH-PNCRLFISHG---G-VNSALEAIHYGIPIIGVPFY------GDQ------LSHVRHI 91 (124)
Q Consensus 32 ~~~~v~~~~---~~~~~~~l~~-~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~------~~q------~~~a~~~ 91 (124)
.++++.+.+ +.+..++... ..+|+++..+ | ..+++||+++|+|+|.--.. +++ ..+....
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 567888874 4454432221 7899999865 2 46799999999999985221 111 1122222
Q ss_pred H--HcCceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 92 V--DLGAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 92 ~--~~g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
. +.|.|..+. ..+.+++.+++.+++.
T Consensus 279 ~~~~~g~g~~~~--~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 279 YDKEHGQKWKIH--KFQIEDMANAIILAFE 306 (335)
T ss_pred cCcccCceeeec--CCCHHHHHHHHHHHHh
Confidence 2 235666654 4689999999998843
No 116
>PRK14098 glycogen synthase; Provisional
Probab=97.22 E-value=0.0027 Score=48.24 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=64.5
Q ss_pred HHHHhhCCCeEEEEEcCCC-----C----CCCCCcEEEeeccChH---HhhcCCCcceEEecCC----hhhHHHHHHhCC
Q psy10186 10 VTAFSRTGLTVLWRYEGDS-----I----ENLPGNVHIRKWIPQQ---DVLAHPNCRLFISHGG----VNSALEAIHYGI 73 (124)
Q Consensus 10 ~~~l~~~~~~~i~~~g~~~-----~----~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~gG----~~t~~ea~~~g~ 73 (124)
+..+.+.+.++++...++. + .+.+.++.+.+.++.. .++ +.+|+++..+- ..+.+||+++|+
T Consensus 329 ~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~--a~aDi~l~PS~~E~~Gl~~lEAma~G~ 406 (489)
T PRK14098 329 LEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI--AGLDMLLMPGKIESCGMLQMFAMSYGT 406 (489)
T ss_pred HHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH--HhCCEEEeCCCCCCchHHHHHHHhCCC
Confidence 3334344677766654431 1 1246789888888865 345 88999998762 357899999999
Q ss_pred Ceeeecccc--cHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHh
Q psy10186 74 PIIGVPFYG--DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 74 P~l~~P~~~--~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll 118 (124)
|.|+....+ |... +..++.+.|..+.+ .+.+++.+++.+++
T Consensus 407 ppVv~~~GGl~d~v~--~~~~~~~~G~l~~~--~d~~~la~ai~~~l 449 (489)
T PRK14098 407 IPVAYAGGGIVETIE--EVSEDKGSGFIFHD--YTPEALVAKLGEAL 449 (489)
T ss_pred CeEEecCCCCceeee--cCCCCCCceeEeCC--CCHHHHHHHHHHHH
Confidence 988764322 2110 01112467877753 35888888888754
No 117
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.20 E-value=0.0013 Score=49.20 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=62.9
Q ss_pred HHHHHhhCCCeEEEEEcCCCC---------CCCCCcEEEeeccChHH---hhcCCCcceEEecC----ChhhHHHHHHhC
Q psy10186 9 LVTAFSRTGLTVLWRYEGDSI---------ENLPGNVHIRKWIPQQD---VLAHPNCRLFISHG----GVNSALEAIHYG 72 (124)
Q Consensus 9 ~~~~l~~~~~~~i~~~g~~~~---------~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~g----G~~t~~ea~~~g 72 (124)
.++.+.+.+.+++++..++.. ...+.++.+....+... ++ ..+|+++..+ ...+.+||+++|
T Consensus 317 a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~aDv~l~pS~~E~~gl~~lEAma~G 394 (476)
T cd03791 317 ALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIY--AGADFFLMPSRFEPCGLTQMYAMRYG 394 (476)
T ss_pred HHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--HhCCEEECCCCCCCCcHHHHHHhhCC
Confidence 334444445777666544320 11356777655444332 34 7899998764 235789999999
Q ss_pred CCeeeecccc--cHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 73 IPIIGVPFYG--DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 73 ~P~l~~P~~~--~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
+|+|+....+ |...+.....+.|.|..+.+. +.+++.+++.++++
T Consensus 395 ~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~--~~~~l~~~i~~~l~ 441 (476)
T cd03791 395 TVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALA 441 (476)
T ss_pred CCCEECcCCCccceEeCCcCCCCCCCeEEeCCC--CHHHHHHHHHHHHH
Confidence 9999753321 211111111133588888643 57889999888764
No 118
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=97.15 E-value=0.0023 Score=49.01 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=59.6
Q ss_pred CcEEEeeccChHHhhcC-CCcceEEecC---ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHH
Q psy10186 34 GNVHIRKWIPQQDVLAH-PNCRLFISHG---GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLES 109 (124)
Q Consensus 34 ~~v~~~~~~~~~~~l~~-~~~d~~i~~g---G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~ 109 (124)
..|.+.++.+..++... ..++++|.-+ |.++.+||+.+|+|+| .......+++..-|.++. +.++
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li~----d~~~ 477 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYIID----DISE 477 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEeC----CHHH
Confidence 57788887774332222 7899999877 6779999999999999 233456677777888885 8999
Q ss_pred HHHHHHHHhcCC
Q psy10186 110 IAWATSIVLNNP 121 (124)
Q Consensus 110 l~~~l~~ll~~~ 121 (124)
|.+++..+|.++
T Consensus 478 l~~al~~~L~~~ 489 (519)
T TIGR03713 478 LLKALDYYLDNL 489 (519)
T ss_pred HHHHHHHHHhCH
Confidence 999999999775
No 119
>PLN00142 sucrose synthase
Probab=97.15 E-value=0.0023 Score=51.26 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=53.1
Q ss_pred CCcEEEeec----cChHHhhcC--CCcceEEecC---C-hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecC
Q psy10186 33 PGNVHIRKW----IPQQDVLAH--PNCRLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSY 102 (124)
Q Consensus 33 ~~~v~~~~~----~~~~~~l~~--~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~ 102 (124)
.+++.+.+. .+..+++.. ..+|+|+..+ | ..+++||+++|+|+|.- +.....+.+++...|..+.+
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVAT----dvGG~~EIV~dG~tG~LV~P 716 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT----CQGGPAEIIVDGVSGFHIDP 716 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCCCcEEEeCC
Confidence 456777653 333444421 2568888764 2 35899999999999985 44456667777778988875
Q ss_pred CCCCHHHHHHHHHHH
Q psy10186 103 FNITLESIAWATSIV 117 (124)
Q Consensus 103 ~~~~~~~l~~~l~~l 117 (124)
. +.++++++|.++
T Consensus 717 ~--D~eaLA~aI~~l 729 (815)
T PLN00142 717 Y--HGDEAANKIADF 729 (815)
T ss_pred C--CHHHHHHHHHHH
Confidence 3 467777776654
No 120
>PLN02949 transferase, transferring glycosyl groups
Probab=97.12 E-value=0.0033 Score=47.46 Aligned_cols=82 Identities=22% Similarity=0.152 Sum_probs=53.9
Q ss_pred CCCcEEEeeccChHHhhcC-CCcceEEecC---C-hhhHHHHHHhCCCeeeecccccHHHHHHHHHH---cCceeEecCC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD---LGAGVELSYF 103 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~-~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~---~g~g~~~~~~ 103 (124)
..+++.+.++++..++... ..+++++... | ..+++||+++|+|+|.....+-- .+.+.+ ...|....
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~~-- 407 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLAT-- 407 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccCC--
Confidence 4678999999987664322 7889988543 2 24799999999999997543210 011111 11344443
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy10186 104 NITLESIAWATSIVLNN 120 (124)
Q Consensus 104 ~~~~~~l~~~l~~ll~~ 120 (124)
+.+++++++.+++++
T Consensus 408 --~~~~la~ai~~ll~~ 422 (463)
T PLN02949 408 --TVEEYADAILEVLRM 422 (463)
T ss_pred --CHHHHHHHHHHHHhC
Confidence 788999999999874
No 121
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.10 E-value=0.0045 Score=46.59 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=59.2
Q ss_pred CCCeEEEEEcCCC-C--------CCCCCcEEE-eeccChH---HhhcCCCcceEEecC---C-hhhHHHHHHhCCCeeee
Q psy10186 16 TGLTVLWRYEGDS-I--------ENLPGNVHI-RKWIPQQ---DVLAHPNCRLFISHG---G-VNSALEAIHYGIPIIGV 78 (124)
Q Consensus 16 ~~~~~i~~~g~~~-~--------~~~~~~v~~-~~~~~~~---~~l~~~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~ 78 (124)
.+.+++++.+++. . .+.+.++.+ .++ +.. .++ ..+|+++..+ | ..+.+||+++|+|.|+.
T Consensus 310 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~--~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~ 386 (466)
T PRK00654 310 QGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIY--AGADMFLMPSRFEPCGLTQLYALRYGTLPIVR 386 (466)
T ss_pred cCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHH--hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEe
Confidence 3678877654431 0 123455553 455 432 344 7899999875 2 35899999999999985
Q ss_pred cccccHHHHHHHHHHc------CceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 79 PFYGDQLSHVRHIVDL------GAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 79 P~~~~q~~~a~~~~~~------g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
... ...+.+.+. +.|..+.+ -+.+++.+++.++++
T Consensus 387 ~~g----G~~e~v~~~~~~~~~~~G~lv~~--~d~~~la~~i~~~l~ 427 (466)
T PRK00654 387 RTG----GLADTVIDYNPEDGEATGFVFDD--FNAEDLLRALRRALE 427 (466)
T ss_pred CCC----CccceeecCCCCCCCCceEEeCC--CCHHHHHHHHHHHHH
Confidence 322 122223222 77888864 357888888888764
No 122
>PHA01630 putative group 1 glycosyl transferase
Probab=96.99 E-value=0.0089 Score=43.24 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred ccChHHhhcC-CCcceEEecCC----hhhHHHHHHhCCCeeeecccccHHHHHHHHHHc--------------------C
Q psy10186 41 WIPQQDVLAH-PNCRLFISHGG----VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDL--------------------G 95 (124)
Q Consensus 41 ~~~~~~~l~~-~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~--------------------g 95 (124)
+++..++... ..+|+++..+- ..+++|||++|+|+|+....+ ..+.+.+. +
T Consensus 197 ~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg----~~E~i~~~~ng~lv~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 197 PLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGA----WSEWVLSNLDVYWIKSGRKPKLWYTNPIH 272 (331)
T ss_pred cCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCC----chhhccCCCceEEeeecccccccccCCcc
Confidence 3665553222 88999886542 468999999999999964322 22233332 2
Q ss_pred ceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 96 AGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 96 ~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
+|..+.+ +.+++.+.+.+++.+
T Consensus 273 ~G~~v~~---~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 273 VGYFLDP---DIEDAYQKLLEALAN 294 (331)
T ss_pred cccccCC---CHHHHHHHHHHHHhC
Confidence 3444432 566777777777765
No 123
>PRK14099 glycogen synthase; Provisional
Probab=96.94 E-value=0.0029 Score=47.99 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=58.1
Q ss_pred hCCCeEEEEEcCCC-----C----CCCCCcE-EEeeccChHHhhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecc
Q psy10186 15 RTGLTVLWRYEGDS-----I----ENLPGNV-HIRKWIPQQDVLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPF 80 (124)
Q Consensus 15 ~~~~~~i~~~g~~~-----~----~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~ 80 (124)
+.+.++++..+++. . ...+.++ .+.++-....-+.++.+|+++..+= ..+.+||+++|+|.|+...
T Consensus 322 ~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~ 401 (485)
T PRK14099 322 GEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARV 401 (485)
T ss_pred hcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCC
Confidence 34677766654431 1 1234455 4667633322222257999998652 3578999999987776432
Q ss_pred cc--cHHHHHHHH-H--HcCceeEecCCCCCHHHHHHHHHH---HhcCC
Q psy10186 81 YG--DQLSHVRHI-V--DLGAGVELSYFNITLESIAWATSI---VLNNP 121 (124)
Q Consensus 81 ~~--~q~~~a~~~-~--~~g~g~~~~~~~~~~~~l~~~l~~---ll~~~ 121 (124)
.+ |........ + ..+.|..+.+. +.+++.+++.+ +++|+
T Consensus 402 GGl~d~V~~~~~~~~~~~~~~G~l~~~~--d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 402 GGLADTVVDANEMAIATGVATGVQFSPV--TADALAAALRKTAALFADP 448 (485)
T ss_pred CCccceeecccccccccCCCceEEeCCC--CHHHHHHHHHHHHHHhcCH
Confidence 11 211111000 1 11568887643 58889999886 55554
No 124
>PLN02316 synthase/transferase
Probab=96.50 E-value=0.044 Score=45.27 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=53.5
Q ss_pred CCcEEEeeccChH---HhhcCCCcceEEecC----ChhhHHHHHHhCCCeeeecccc--cHHHHHHH----HH---HcCc
Q psy10186 33 PGNVHIRKWIPQQ---DVLAHPNCRLFISHG----GVNSALEAIHYGIPIIGVPFYG--DQLSHVRH----IV---DLGA 96 (124)
Q Consensus 33 ~~~v~~~~~~~~~---~~l~~~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~--~q~~~a~~----~~---~~g~ 96 (124)
++++.+...++.. .++ +.+|+|+..+ -..+.+|||++|+|.|+-...+ |....... .+ ..+.
T Consensus 899 ~~rV~f~g~~de~lah~iy--aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIY--AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHH--HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 4567776655543 345 8999999765 2468999999999998853322 22211100 00 0257
Q ss_pred eeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 97 GVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 97 g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
|..+. ..+.+.+..+|.+.+.+
T Consensus 977 Gflf~--~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 977 GFSFD--GADAAGVDYALNRAISA 998 (1036)
T ss_pred eEEeC--CCCHHHHHHHHHHHHhh
Confidence 88885 33678888888888764
No 125
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.43 E-value=0.0066 Score=35.28 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=41.1
Q ss_pred cCChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCC
Q psy10186 59 HGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 59 ~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
.+-...++|++++|+|+|.-+ -......+.+.--++.++ +.+++.+.+..++++|..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~----~~~~~~~~~~~~~~~~~~----~~~el~~~i~~ll~~~~~ 65 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDD----SPGLREIFEDGEHIITYN----DPEELAEKIEYLLENPEE 65 (92)
T ss_pred CCCchHHHHHHHCCCeEEECC----hHHHHHHcCCCCeEEEEC----CHHHHHHHHHHHHCCHHH
Confidence 444568999999999999953 344444443333555555 899999999999998754
No 126
>PLN02939 transferase, transferring glycosyl groups
Probab=96.31 E-value=0.055 Score=44.31 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=54.8
Q ss_pred CCcEEEeeccChH---HhhcCCCcceEEecC----ChhhHHHHHHhCCCeeeecccc--cHHHH--HHHH-HHcCceeEe
Q psy10186 33 PGNVHIRKWIPQQ---DVLAHPNCRLFISHG----GVNSALEAIHYGIPIIGVPFYG--DQLSH--VRHI-VDLGAGVEL 100 (124)
Q Consensus 33 ~~~v~~~~~~~~~---~~l~~~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~--~q~~~--a~~~-~~~g~g~~~ 100 (124)
.++|.+.++++.. .++ +.+|+|+..+ -..+.+||+++|+|.|+....+ |...+ ...+ ++.+.|..+
T Consensus 836 ~drV~FlG~~de~lah~IY--AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIY--AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHH--HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4578888888764 355 8899999875 2458999999999999864432 22111 1111 123578777
Q ss_pred cCCCCCHHHHHHHHHHHhc
Q psy10186 101 SYFNITLESIAWATSIVLN 119 (124)
Q Consensus 101 ~~~~~~~~~l~~~l~~ll~ 119 (124)
.+ .+.+++.+++.+++.
T Consensus 914 ~~--~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT--PDEQGLNSALERAFN 930 (977)
T ss_pred cC--CCHHHHHHHHHHHHH
Confidence 53 367788888877653
No 127
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.25 E-value=0.23 Score=37.33 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhCCCeEEEEEcC--------CCC-------CC--CCCcEEE-ee-ccChH--HhhcCCCcceEEecCChh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEG--------DSI-------EN--LPGNVHI-RK-WIPQQ--DVLAHPNCRLFISHGGVN 63 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~--------~~~-------~~--~~~~v~~-~~-~~~~~--~~l~~~~~d~~i~~gG~~ 63 (124)
.+.++++.+.+.|+++++.-.. ++. .. .+.++++ .+ +-+.+ .++ .+||++|..==+
T Consensus 261 ~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iI--s~~dl~ig~RlH- 337 (426)
T PRK10017 261 AFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKIL--GACELTVGTRLH- 337 (426)
T ss_pred HHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHH--hhCCEEEEecch-
Confidence 4455666666668887765432 110 00 2333333 32 22332 455 789998876544
Q ss_pred hHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeE-ecCCCCCHHHHHHHHHHHhcCC
Q psy10186 64 SALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVE-LSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 64 t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~-~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
++.-|+..|+|++.+++ .+.....+.+.|.... ++.++++.+++.+.+.+++++.
T Consensus 338 a~I~a~~~gvP~i~i~Y---~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 338 SAIISMNFGTPAIAINY---EHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred HHHHHHHcCCCEEEeee---hHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCH
Confidence 57778999999999976 3555666688888755 6667888899999999988763
No 128
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=96.23 E-value=0.12 Score=36.80 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh----CCCeeeec
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIPIIGVP 79 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P 79 (124)
+.+..+++.+++.++.+.+-........ ..+. . ..+..+.- ..+|++|+-||-||+++++.. ++|++.+.
T Consensus 21 e~~~~i~~~L~~~g~~v~v~~~~~~~~~-~~~~--~-~~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 21 EPLESLAAFLAKRGFEVVFEADTARNIG-LTGY--P-ALTPEEIG--ARADLAVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhhhcC-cccc--c-ccChhHhc--cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 4567777778888887766432111000 0000 0 11223322 578999999999999999774 67888873
Q ss_pred ccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 80 ~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
.. .+|... +++.+++.+.+.++++.
T Consensus 95 ~G-------------~lGFL~---~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 95 HG-------------RLGFIT---DIPLDDMQETLPPMLAG 119 (291)
T ss_pred CC-------------Cccccc---cCCHHHHHHHHHHHHcC
Confidence 21 123222 34567777777776643
No 129
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=96.20 E-value=0.028 Score=42.30 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhCC-CeEEEEEcCC------CCCCCCCcEEE-eeccC--hHHhhcCCCcceE--EecCC--hhhHHHH
Q psy10186 3 DGMRTLLVTAFSRTG-LTVLWRYEGD------SIENLPGNVHI-RKWIP--QQDVLAHPNCRLF--ISHGG--VNSALEA 68 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~-~~~i~~~g~~------~~~~~~~~v~~-~~~~~--~~~~l~~~~~d~~--i~~gG--~~t~~ea 68 (124)
.+.++.+.....++| ++|-+..+.. +.. ..+|+.. .++.+ ..+++ ..||++ |+|+. ..++.||
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~-~y~nvvly~~~~~~~l~~ly--~~~dlyLdin~~e~~~~al~eA 367 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLD-KYDNVKLYPNITTQKIQELY--QTCDIYLDINHGNEILNAVRRA 367 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHH-hcCCcEEECCcChHHHHHHH--HhccEEEEccccccHHHHHHHH
Confidence 456666666667775 5776655443 122 2356654 44555 34566 788886 56664 5789999
Q ss_pred HHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 69 IHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 69 ~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
+.+|+|++..=. -..+...+.+ |.++.. -+.+++.++|.+++.++
T Consensus 368 ~~~G~pI~afd~---t~~~~~~i~~---g~l~~~--~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 368 FEYNLLILGFEE---TAHNRDFIAS---ENIFEH--NEVDQLISKLKDLLNDP 412 (438)
T ss_pred HHcCCcEEEEec---ccCCcccccC---CceecC--CCHHHHHHHHHHHhcCH
Confidence 999999999622 1222233333 444432 25889999999998876
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.038 Score=42.67 Aligned_cols=97 Identities=20% Similarity=0.254 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCC-------------CC-CCCcEEEeeccChHHhhcC-CCcceEEec---CChh
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSI-------------EN-LPGNVHIRKWIPQQDVLAH-PNCRLFISH---GGVN 63 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~-------------~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~~---gG~~ 63 (124)
+++.+..=++-|+..|-.++|..++... .+ .+..+++.+-.|..+-++. ..+|+|+.. ||+.
T Consensus 443 ~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~T 522 (620)
T COG3914 443 TPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHT 522 (620)
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCCcc
Confidence 4667777778888889989998776220 11 3567888887775543332 889999864 7999
Q ss_pred hHHHHHHhCCCeeeecccccHHHH---HHHHHHcCceeEe
Q psy10186 64 SALEAIHYGIPIIGVPFYGDQLSH---VRHIVDLGAGVEL 100 (124)
Q Consensus 64 t~~ea~~~g~P~l~~P~~~~q~~~---a~~~~~~g~g~~~ 100 (124)
|.+|++.+|+|++..+ ++|+.- +..+...|+-..+
T Consensus 523 Ta~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 523 TASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred chHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 9999999999999974 666542 3333445655444
No 131
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.94 E-value=0.048 Score=38.86 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCC-------CCCCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHHhCC
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSI-------ENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYGI 73 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~-------~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~g~ 73 (124)
|.+.+.++++.+.+.++++++..|+... .+.-++..+.+-.+..++.+. ..||++|+.-.. .+.=|.+.|+
T Consensus 196 p~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~I~~DSg-p~HlAaa~g~ 274 (319)
T TIGR02193 196 PEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAVVGVDTG-LTHLAAALDK 274 (319)
T ss_pred CHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEEEeCCCh-HHHHHHHcCC
Confidence 6788999999997778888776554321 111122244454454332222 889999998866 5777889999
Q ss_pred Ceeee--cccccHHHHHHHHHHcCce-eEec---CCCCCHHHHHHHHHHHh
Q psy10186 74 PIIGV--PFYGDQLSHVRHIVDLGAG-VELS---YFNITLESIAWATSIVL 118 (124)
Q Consensus 74 P~l~~--P~~~~q~~~a~~~~~~g~g-~~~~---~~~~~~~~l~~~l~~ll 118 (124)
|++.+ |....+ ..-.|-. ..+. -++.+.+++.+++++++
T Consensus 275 P~i~lfg~t~p~~------~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 275 PTVTLYGATDPGR------TGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred CEEEEECCCCHhh------cccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 99986 322111 1011111 1111 34678999999998874
No 132
>KOG0853|consensus
Probab=95.91 E-value=0.0028 Score=47.98 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=56.3
Q ss_pred EEEeeccChHHhhcC-CCcceEEec-CC---hhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHH
Q psy10186 36 VHIRKWIPQQDVLAH-PNCRLFISH-GG---VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESI 110 (124)
Q Consensus 36 v~~~~~~~~~~~l~~-~~~d~~i~~-gG---~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l 110 (124)
+.+....++.+.+.. +.++++... .+ ..+++||+++|+|++.. ++-.-++.+++.-.|..++++.-....+
T Consensus 348 v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt----~~GGP~EiV~~~~tG~l~dp~~e~~~~~ 423 (495)
T KOG0853|consen 348 VWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVAT----NNGGPAEIVVHGVTGLLIDPGQEAVAEL 423 (495)
T ss_pred EEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEe----cCCCceEEEEcCCcceeeCCchHHHHHH
Confidence 334444444332221 566665444 33 35899999999999996 5666667777777888887633334479
Q ss_pred HHHHHHHhcCCCC
Q psy10186 111 AWATSIVLNNPRR 123 (124)
Q Consensus 111 ~~~l~~ll~~~~~ 123 (124)
++++.++..||++
T Consensus 424 a~~~~kl~~~p~l 436 (495)
T KOG0853|consen 424 ADALLKLRRDPEL 436 (495)
T ss_pred HHHHHHHhcCHHH
Confidence 9999999998875
No 133
>KOG4626|consensus
Probab=95.84 E-value=0.041 Score=43.18 Aligned_cols=100 Identities=12% Similarity=0.221 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCC------------CCCCCcEEEeeccChHHhhc-CCCcceEEecC---ChhhH
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSI------------ENLPGNVHIRKWIPQQDVLA-HPNCRLFISHG---GVNSA 65 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~------------~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~g---G~~t~ 65 (124)
.++.++.-++-|.+.|..++|....... .-.|+.+.+.+-....+-+. ...+|+.+... |..|-
T Consensus 772 dP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg 851 (966)
T KOG4626|consen 772 DPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTG 851 (966)
T ss_pred CHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccc
Confidence 4667777778888899999998654321 11456676666555444332 25577766554 77899
Q ss_pred HHHHHhCCCeeeeccccc-HHHHHHHHHHcCceeEec
Q psy10186 66 LEAIHYGIPIIGVPFYGD-QLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 66 ~ea~~~g~P~l~~P~~~~-q~~~a~~~~~~g~g~~~~ 101 (124)
++.+..|+|++..|.-.- ..--+..+...|+|..+-
T Consensus 852 ~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 852 MDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred hhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 999999999999986432 233455667778887554
No 134
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=95.84 E-value=0.054 Score=39.49 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=65.9
Q ss_pred CcEEE-eeccChHHhhcC-CCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCH
Q psy10186 34 GNVHI-RKWIPQQDVLAH-PNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL 107 (124)
Q Consensus 34 ~~v~~-~~~~~~~~~l~~-~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 107 (124)
+++.+ .+++|..+-+.. .+||+.|..- |.|+++-.+.+|+|+.+- .+..--+.+.+.|+-+....++++.
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~~ipVlf~~d~L~~ 320 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQGIPVLFYGDELDE 320 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhCCCeEEeccccCCH
Confidence 47765 568887663322 8899977655 899999999999999994 6667777888889999888889999
Q ss_pred HHHHHHHHHHhc
Q psy10186 108 ESIAWATSIVLN 119 (124)
Q Consensus 108 ~~l~~~l~~ll~ 119 (124)
+.+.++=+++..
T Consensus 321 ~~v~ea~rql~~ 332 (360)
T PF07429_consen 321 ALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHhh
Confidence 999998887763
No 135
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.74 E-value=0.24 Score=35.32 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh----CCCeeeec
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIPIIGVP 79 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P 79 (124)
+...++.+.|.+.+..+.+--.....-..+ .+ +..++. ..+|++|+=||-||++.++.. ++|++.+-
T Consensus 25 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~------~~-~~~~~~--~~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN 95 (287)
T PRK14077 25 KEILKLQKILSIYKVEILLEKESAEILDLP------GY-GLDELF--KISDFLISLGGDGTLISLCRKAAEYDKFVLGIH 95 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhhhhccc------cc-chhhcc--cCCCEEEEECCCHHHHHHHHHhcCCCCcEEEEe
Confidence 445666666777777766532111100001 11 112322 469999999999999988663 77988873
Q ss_pred ccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 80 ~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
.. .+|-. .+++.+++.++++++++.
T Consensus 96 ~G-------------~lGFL---t~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 96 AG-------------HLGFL---TDITVDEAEKFFQAFFQG 120 (287)
T ss_pred CC-------------CcccC---CcCCHHHHHHHHHHHHcC
Confidence 21 12222 234567777777776643
No 136
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.72 E-value=0.11 Score=36.31 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=48.7
Q ss_pred HHHHHHHH-hhC-CCeEEEEEcCCC--------CC---CCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhC
Q psy10186 6 RTLLVTAF-SRT-GLTVLWRYEGDS--------IE---NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYG 72 (124)
Q Consensus 6 ~~~~~~~l-~~~-~~~~i~~~g~~~--------~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g 72 (124)
+.++++.+ ... +.++++..-+.. .. .....+.+.+..+..+++ ..||.+|+-.+. +-+||+.+|
T Consensus 142 ~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll--~~s~~VvtinSt-vGlEAll~g 218 (269)
T PF05159_consen 142 FLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELL--EQSDAVVTINST-VGLEALLHG 218 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHH--HhCCEEEEECCH-HHHHHHHcC
Confidence 34444434 344 467776655421 11 123344556677888888 789999999887 789999999
Q ss_pred CCeeeecc
Q psy10186 73 IPIIGVPF 80 (124)
Q Consensus 73 ~P~l~~P~ 80 (124)
||++++..
T Consensus 219 kpVi~~G~ 226 (269)
T PF05159_consen 219 KPVIVFGR 226 (269)
T ss_pred CceEEecC
Confidence 99999844
No 137
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=95.68 E-value=0.037 Score=41.87 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=51.6
Q ss_pred EeeccChHHhhcC-CCcceEEecC---C-hhhHHHHHHhCCC----eeeecccccHHHHHHHHHHcCceeEecCCCCCHH
Q psy10186 38 IRKWIPQQDVLAH-PNCRLFISHG---G-VNSALEAIHYGIP----IIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLE 108 (124)
Q Consensus 38 ~~~~~~~~~~l~~-~~~d~~i~~g---G-~~t~~ea~~~g~P----~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~ 108 (124)
+.+.++..++.+. ..+|+++..+ | ..++.|++++|+| +|+--.. ..+..+ +.|..+++ .+.+
T Consensus 340 l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~----G~~~~l---~~gllVnP--~d~~ 410 (456)
T TIGR02400 340 LNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFA----GAAQEL---NGALLVNP--YDID 410 (456)
T ss_pred EcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCC----CChHHh---CCcEEECC--CCHH
Confidence 3446677665443 8999999876 5 4678899999999 6664322 223333 25777754 3688
Q ss_pred HHHHHHHHHhcCC
Q psy10186 109 SIAWATSIVLNNP 121 (124)
Q Consensus 109 ~l~~~l~~ll~~~ 121 (124)
+++++|.++++.+
T Consensus 411 ~lA~aI~~aL~~~ 423 (456)
T TIGR02400 411 GMADAIARALTMP 423 (456)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998754
No 138
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=95.56 E-value=0.075 Score=39.23 Aligned_cols=103 Identities=20% Similarity=0.198 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCC--------CCCCCcEEEeec-cChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecc-cccHHH
Q psy10186 17 GLTVLWRYEGDSI--------ENLPGNVHIRKW-IPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPF-YGDQLS 86 (124)
Q Consensus 17 ~~~~i~~~g~~~~--------~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~-~~~q~~ 86 (124)
+.+|++..-+... .....++.+... -...+.+ ..||+.+..+|. .++|++..|+|++++=. ..=...
T Consensus 218 ~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m--~~ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~ 294 (373)
T PF02684_consen 218 DLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAM--AAADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYF 294 (373)
T ss_pred CeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHH--HhCcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHH
Confidence 4677776654321 112333333322 2345566 789999999988 68999999999999722 223455
Q ss_pred HHHHHHHcCc--------eeEec----CCCCCHHHHHHHHHHHhcCCC
Q psy10186 87 HVRHIVDLGA--------GVELS----YFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 87 ~a~~~~~~g~--------g~~~~----~~~~~~~~l~~~l~~ll~~~~ 122 (124)
.++++.+... |..+- .++++.+.+.+.+.++++|+.
T Consensus 295 iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~ 342 (373)
T PF02684_consen 295 IAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPE 342 (373)
T ss_pred HHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHH
Confidence 6666654321 11111 257799999999999998864
No 139
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.54 E-value=0.14 Score=37.79 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=57.1
Q ss_pred CcEEEeecc---ChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHH
Q psy10186 34 GNVHIRKWI---PQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESI 110 (124)
Q Consensus 34 ~~v~~~~~~---~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l 110 (124)
+++.+.+.+ +...++ ..|-++++-+|.. --||...|+|++++-...+++. ..+.|.-+.+. .+.+.+
T Consensus 262 ~~v~li~pl~~~~f~~L~--~~a~~iltDSGgi-qEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg---~~~~~i 331 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLM--KNAFLILTDSGGI-QEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVG---TDEENI 331 (383)
T ss_pred CcEEEeCCcchHHHHHHH--HhceEEEecCCch-hhhHHhcCCcEEeeccCCCCcc----ceecCceEEeC---ccHHHH
Confidence 457766654 455566 6788999999874 7899999999999966667765 23345545554 367888
Q ss_pred HHHHHHHhcCCC
Q psy10186 111 AWATSIVLNNPR 122 (124)
Q Consensus 111 ~~~l~~ll~~~~ 122 (124)
.+++.++++++.
T Consensus 332 ~~~~~~ll~~~~ 343 (383)
T COG0381 332 LDAATELLEDEE 343 (383)
T ss_pred HHHHHHHhhChH
Confidence 889988887754
No 140
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.45 E-value=0.4 Score=33.97 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=66.6
Q ss_pred HHHHHhhCCCeEEEEEcCCCCCC----------CCCcEEE----eeccChHHhhcCCCcceEEecCC-hhhHHHHHHhCC
Q psy10186 9 LVTAFSRTGLTVLWRYEGDSIEN----------LPGNVHI----RKWIPQQDVLAHPNCRLFISHGG-VNSALEAIHYGI 73 (124)
Q Consensus 9 ~~~~l~~~~~~~i~~~g~~~~~~----------~~~~v~~----~~~~~~~~~l~~~~~d~~i~~gG-~~t~~ea~~~g~ 73 (124)
+.+.+++.|..|+....+..++. ..+.+.+ .++=|+.+.| ..+|.+|+... .+.+.||++.|+
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~L--a~Adyii~TaDSinM~sEAasTgk 266 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDML--AAADYIISTADSINMCSEAASTGK 266 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHH--hhcceEEEecchhhhhHHHhccCC
Confidence 34455667788888776643211 1111221 2445778888 78999888776 466789999999
Q ss_pred Ceeee-cccc---cHHHHHHHHHHcCceeEecCCC----------C-CHHHHHHHHHHHhc
Q psy10186 74 PIIGV-PFYG---DQLSHVRHIVDLGAGVELSYFN----------I-TLESIAWATSIVLN 119 (124)
Q Consensus 74 P~l~~-P~~~---~q~~~a~~~~~~g~g~~~~~~~----------~-~~~~l~~~l~~ll~ 119 (124)
|+-+. |... --...-+.+++.+++..+..++ + ..+.+++.|+..+.
T Consensus 267 Pv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~~~e~ysy~PLnEt~RiA~~Ira~l~ 327 (329)
T COG3660 267 PVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNLALEEYSYKPLNETERIAEEIRAELG 327 (329)
T ss_pred CeEEEecCCcchHHHHHHHHHHHHhhhccccCcchhhhcccccCCchHHHHHHHHHHHHhC
Confidence 99886 3322 1233455566677776665321 1 36677777776653
No 141
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.44 E-value=0.33 Score=34.93 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCC-CCC-CCC---cEEEeeccCh-HHhhcCCCcceEEecCChhhHHHHHHh----CC
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDS-IEN-LPG---NVHIRKWIPQ-QDVLAHPNCRLFISHGGVNSALEAIHY----GI 73 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~-~~~-~~~---~v~~~~~~~~-~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~ 73 (124)
+...++.+.|.+.+..+.+.-.... ... .+. .+. ...++. .... ..+|++|+=||-||++.+++. ++
T Consensus 21 ~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~D~vi~lGGDGT~L~aar~~~~~~~ 97 (306)
T PRK03372 21 EAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRA-MEVVDADPDAA--DGCELVLVLGGDGTILRAAELARAADV 97 (306)
T ss_pred HHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccc-cccccchhhcc--cCCCEEEEEcCCHHHHHHHHHhccCCC
Confidence 4566777778788887766432111 100 000 000 111121 2222 579999999999999998764 78
Q ss_pred CeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 74 PIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 74 P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
|++.+.. ..+|... ++..+++.++++++++.
T Consensus 98 PilGIN~-------------G~lGFL~---~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 98 PVLGVNL-------------GHVGFLA---EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cEEEEec-------------CCCceec---cCCHHHHHHHHHHHHcC
Confidence 9998843 1133333 24567777777777754
No 142
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.29 E-value=0.41 Score=34.24 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh----CCCeeeec
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIPIIGVP 79 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P 79 (124)
+..+++.+.|.+.+..+.+.-.... ..+.+- ....+..++- ..+|++|+=||-||+++++.. ++|++.+.
T Consensus 20 e~~~~i~~~L~~~giev~v~~~~~~--~~~~~~--~~~~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin 93 (295)
T PRK01231 20 ETLRRLKDFLLDRGLEVILDEETAE--VLPGHG--LQTVSRKLLG--EVCDLVIVVGGDGSLLGAARALARHNVPVLGIN 93 (295)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhh--hcCccc--ccccchhhcc--cCCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEe
Confidence 4566777778788887655321111 011110 1122222222 468999999999999999763 66888874
Q ss_pred ccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 80 ~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
. -.+|.. .+++.+++.++++++++.
T Consensus 94 ~-------------G~lGFl---~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 94 R-------------GRLGFL---TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred C-------------Cccccc---ccCCHHHHHHHHHHHHcC
Confidence 3 123322 345788888888888754
No 143
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.27 E-value=0.37 Score=34.42 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcE--EEeeccChHHhhcCCCcceEEecCChhhHHHHHHh----CCCeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNV--HIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIPIIG 77 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P~l~ 77 (124)
+...++.+.|.+.+..+++--............ ......+..++. ..+|++|+=||-||++.++.. ++|++.
T Consensus 16 ~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~lGGDGT~L~aa~~~~~~~~PilG 93 (292)
T PRK01911 16 PYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD--GSADMVISIGGDGTFLRTATYVGNSNIPILG 93 (292)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc--cCCCEEEEECCcHHHHHHHHHhcCCCCCEEE
Confidence 356677777888888776632211100000000 000110222322 468999999999999999874 679888
Q ss_pred ecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 78 VPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 78 ~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
+-.. .+|... +++.+++.+++++++++
T Consensus 94 IN~G-------------~lGFLt---~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 94 INTG-------------RLGFLA---TVSKEEIEETIDELLNG 120 (292)
T ss_pred EecC-------------CCCccc---ccCHHHHHHHHHHHHcC
Confidence 7331 133222 34567777777777654
No 144
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.21 E-value=0.49 Score=33.91 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCC---CCCC-CCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh----CCCe
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDS---IENL-PGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIPI 75 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~---~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P~ 75 (124)
+....+.+.|.+.+..+++--.... .... ..+. ...+..++. ..+|++|+=||-||++.+++. ++|+
T Consensus 21 ~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~D~vi~lGGDGT~L~aa~~~~~~~~Pi 95 (296)
T PRK04539 21 DTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGC---HIVNKTELG--QYCDLVAVLGGDGTFLSVAREIAPRAVPI 95 (296)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccchhccccccc---cccchhhcC--cCCCEEEEECCcHHHHHHHHHhcccCCCE
Confidence 3566677777788887765321110 0000 0111 112223322 469999999999999999753 7899
Q ss_pred eeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 76 IGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 76 l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
+.+-.. .+|... +++.+++.+++++++++
T Consensus 96 lGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 96 IGINQG-------------HLGFLT---QIPREYMTDKLLPVLEG 124 (296)
T ss_pred EEEecC-------------CCeEee---ccCHHHHHHHHHHHHcC
Confidence 988321 134333 24667777777777654
No 145
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.14 E-value=0.15 Score=37.04 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCCC-----C------CCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHH
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIE-----N------LPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAI 69 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-----~------~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~ 69 (124)
|.+.+.++++.|.+.++++++..|+++.+ + .+..+.+.+..+..++.+. ..||++|+.-.. .+.=|.
T Consensus 200 p~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSG-p~HlAa 278 (352)
T PRK10422 200 DNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSA-PAHIAA 278 (352)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCH-HHHHHH
Confidence 67889999999987788988877764311 0 1122334555554442222 889999999866 577788
Q ss_pred HhCCCeeee
Q psy10186 70 HYGIPIIGV 78 (124)
Q Consensus 70 ~~g~P~l~~ 78 (124)
+.|+|++.+
T Consensus 279 A~g~P~v~l 287 (352)
T PRK10422 279 AVNTPLICL 287 (352)
T ss_pred HcCCCEEEE
Confidence 999999986
No 146
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.13 E-value=0.14 Score=35.80 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCCC-------CC--CCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHHh
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIE-------NL--PGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHY 71 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-------~~--~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~ 71 (124)
|.+.+.++++.+.+.++++++..++++.. .. ...+.+.+..+..++... ..+|++|+.-. |++.=|.+.
T Consensus 138 ~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds-g~~HlA~a~ 216 (279)
T cd03789 138 PAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS-GPMHLAAAL 216 (279)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC-HHHHHHHHc
Confidence 67889999999987788988776654311 11 122223343333332222 78999999965 356667899
Q ss_pred CCCeeee
Q psy10186 72 GIPIIGV 78 (124)
Q Consensus 72 g~P~l~~ 78 (124)
|+|++.+
T Consensus 217 ~~p~i~l 223 (279)
T cd03789 217 GTPTVAL 223 (279)
T ss_pred CCCEEEE
Confidence 9999987
No 147
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.02 E-value=0.11 Score=37.21 Aligned_cols=111 Identities=10% Similarity=0.080 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCC-C------CCCCCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHHhCC
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGD-S------IENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYGI 73 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~-~------~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~g~ 73 (124)
|.+.+.++++.+.+.++++++..|+. + ..+..+++.+.+..+..++.+. ..||++|+.-.. .+.=|.+.|+
T Consensus 195 p~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I~nDSG-p~HlA~A~g~ 273 (322)
T PRK10964 195 PEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVVSVDTG-LSHLTAALDR 273 (322)
T ss_pred CHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEEecCCc-HHHHHHHhCC
Confidence 67889999999987788877654542 1 1112233445555554432222 889999998865 6888899999
Q ss_pred Ceeee--cccccHHHHHHHHHHcC-ceeEec-----CCCCCHHHHHHHHHHHhc
Q psy10186 74 PIIGV--PFYGDQLSHVRHIVDLG-AGVELS-----YFNITLESIAWATSIVLN 119 (124)
Q Consensus 74 P~l~~--P~~~~q~~~a~~~~~~g-~g~~~~-----~~~~~~~~l~~~l~~ll~ 119 (124)
|++.+ |..... +.- .| ....+. -.+.+.+++.++++++++
T Consensus 274 p~valfGpt~p~~--~~p----~~~~~~~~~~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 274 PNITLYGPTDPGL--IGG----YGKNQHACRSPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred CEEEEECCCCccc--ccC----CCCCceeecCCCcccccCCHHHHHHHHHHHhh
Confidence 99997 332111 100 00 011111 236789999999998874
No 148
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.99 E-value=0.058 Score=42.08 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHhhcCCCcceEEecCChhhHHHHHHhCCCeeeeccc-ccHHHHHHHHHHc-----C-----ce-----eEec-CCCCCH
Q psy10186 45 QDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY-GDQLSHVRHIVDL-----G-----AG-----VELS-YFNITL 107 (124)
Q Consensus 45 ~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~-~~q~~~a~~~~~~-----g-----~g-----~~~~-~~~~~~ 107 (124)
.+++ ..||+.+..+|. .++|++..|+|++++=.. .=-...++++.+. + +| ..+. .++++.
T Consensus 483 ~~~m--~aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELM--RECDCALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHH--HhcCeeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 4666 789999999998 689999999999997222 2233455665551 1 11 2232 357789
Q ss_pred HHHHHHHHHHhcCCC
Q psy10186 108 ESIAWATSIVLNNPR 122 (124)
Q Consensus 108 ~~l~~~l~~ll~~~~ 122 (124)
+++.+++ +++.|++
T Consensus 560 e~La~~l-~lL~d~~ 573 (608)
T PRK01021 560 EEVAAAL-DILKTSQ 573 (608)
T ss_pred HHHHHHH-HHhcCHH
Confidence 9999986 7777764
No 149
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=94.90 E-value=0.039 Score=41.64 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=50.2
Q ss_pred EeeccChHHhhcC-CCcceEEecC---C-hhhHHHHHHhCCC---eeeecccccHHHHHHHHHHcCceeEecCCCCCHHH
Q psy10186 38 IRKWIPQQDVLAH-PNCRLFISHG---G-VNSALEAIHYGIP---IIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLES 109 (124)
Q Consensus 38 ~~~~~~~~~~l~~-~~~d~~i~~g---G-~~t~~ea~~~g~P---~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~ 109 (124)
+.++++..++... ..+|+++..+ | ..+++||+++|+| ++++.. ....+.. ...|..+++ .+.++
T Consensus 345 ~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~---~~G~~~~---~~~g~lv~p--~d~~~ 416 (460)
T cd03788 345 LYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSE---FAGAAEE---LSGALLVNP--YDIDE 416 (460)
T ss_pred EeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEec---cccchhh---cCCCEEECC--CCHHH
Confidence 3457777665443 8999998765 3 3578899999999 334322 1111111 235677754 35889
Q ss_pred HHHHHHHHhcCC
Q psy10186 110 IAWATSIVLNNP 121 (124)
Q Consensus 110 l~~~l~~ll~~~ 121 (124)
++++|.++++++
T Consensus 417 la~ai~~~l~~~ 428 (460)
T cd03788 417 VADAIHRALTMP 428 (460)
T ss_pred HHHHHHHHHcCC
Confidence 999999998765
No 150
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.84 E-value=0.6 Score=33.40 Aligned_cols=95 Identities=19% Similarity=0.135 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh----CCCeeeec
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIPIIGVP 79 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P 79 (124)
+...++.+.|.+.++.+.+--....... ... ....+..++. ..+|++|+=||-||++.++.. ++|++.+-
T Consensus 21 ~~~~~i~~~l~~~g~~v~~~~~~~~~~~-~~~---~~~~~~~~~~--~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin 94 (292)
T PRK03378 21 TTHEMLYHWLTSKGYEVIVEQQIAHELQ-LKN---VKTGTLAEIG--QQADLAIVVGGDGNMLGAARVLARYDIKVIGIN 94 (292)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhhhcC-ccc---ccccchhhcC--CCCCEEEEECCcHHHHHHHHHhcCCCCeEEEEE
Confidence 3456667777777777655321110000 000 0111222322 469999999999999999753 67888873
Q ss_pred ccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 80 ~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
.. .+|... +++.+++.++++++++.
T Consensus 95 ~G-------------~lGFl~---~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 95 RG-------------NLGFLT---DLDPDNALQQLSDVLEG 119 (292)
T ss_pred CC-------------CCCccc---ccCHHHHHHHHHHHHcC
Confidence 21 123222 24567777777777654
No 151
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.75 E-value=0.18 Score=34.62 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=53.3
Q ss_pred CCcEEEeeccChHH---hhcCCCcceEEecC---Ch-hhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCC
Q psy10186 33 PGNVHIRKWIPQQD---VLAHPNCRLFISHG---GV-NSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNI 105 (124)
Q Consensus 33 ~~~v~~~~~~~~~~---~l~~~~~d~~i~~g---G~-~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~ 105 (124)
..++.+.++++..+ ++ ..+|+++... |. .++.|++++|+|++.- +.....+.+.+.+.|..... .
T Consensus 256 ~~~v~~~g~~~~~~~~~~~--~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~~~~g~~~~~-~- 327 (381)
T COG0438 256 EDNVKFLGYVPDEELAELL--ASADVFVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVEDGETGLLVPP-G- 327 (381)
T ss_pred CCcEEEecccCHHHHHHHH--HhCCEEEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcCCCceEecCC-C-
Confidence 46788888888322 33 6688888773 33 4469999999999885 33334444444434653332 2
Q ss_pred CHHHHHHHHHHHhcCC
Q psy10186 106 TLESIAWATSIVLNNP 121 (124)
Q Consensus 106 ~~~~l~~~l~~ll~~~ 121 (124)
+.+++..++..+++++
T Consensus 328 ~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 328 DVEELADALEQLLEDP 343 (381)
T ss_pred CHHHHHHHHHHHhcCH
Confidence 6788888888887664
No 152
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=94.71 E-value=0.2 Score=36.15 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=58.7
Q ss_pred CcEEE-eeccChHHhhcC-CCcceEEecC----ChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCH
Q psy10186 34 GNVHI-RKWIPQQDVLAH-PNCRLFISHG----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL 107 (124)
Q Consensus 34 ~~v~~-~~~~~~~~~l~~-~~~d~~i~~g----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 107 (124)
+++.+ .+++|..+-+.. +.||+.|..- |.||++-.+..|+|+++- .+..--+.+.+.|+-+....++++.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~----r~n~fwqdl~e~gv~Vlf~~d~L~~ 281 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS----RDNPFWQDLTEQGLPVLFTGDDLDE 281 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe----cCCchHHHHHhCCCeEEecCCcccH
Confidence 57765 557776553222 8899965544 899999999999999995 3433334477788888888888888
Q ss_pred HHHHHHHHHHh
Q psy10186 108 ESIAWATSIVL 118 (124)
Q Consensus 108 ~~l~~~l~~ll 118 (124)
..+.++=+++.
T Consensus 282 ~~v~e~~rql~ 292 (322)
T PRK02797 282 DIVREAQRQLA 292 (322)
T ss_pred HHHHHHHHHHH
Confidence 88888755543
No 153
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.70 E-value=0.44 Score=33.61 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=37.3
Q ss_pred CCcceEEecCChhhHHHHHHh-----CCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 51 PNCRLFISHGGVNSALEAIHY-----GIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~-----g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
..+|++|+=||-||++.++.. .+|++.+...+ .+|.. .+++.+++.+++++++++
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL---~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFY---CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEc---ccCCHHHHHHHHHHHHcC
Confidence 458999999999999999875 56767763311 23322 234667777777777644
No 154
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.59 E-value=0.81 Score=32.41 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=52.8
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh----CCCeeeeccc
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIPIIGVPFY 81 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P~~ 81 (124)
..++.+.|.+.+..+.+--........+. ..+.+..++. ..+|++|+=||-||++.+++. ++|++.+-..
T Consensus 2 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~----~~~~~~~~~~--~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 2 HKNLFHWLKERGYQVLVEKEIAEQLNLPE----NHLASLEEIG--QRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHHHHCCCEEEEecchhhhcCccc----cccCChHHhC--cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC
Confidence 34566778888887766421111101010 1112333333 568999999999999988653 6798887321
Q ss_pred ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 82 GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 82 ~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
.+|... +++.+++.+.+.++++
T Consensus 76 -------------~lGFL~---~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 76 -------------NLGFLT---DIDPKNAYEQLEACLE 97 (272)
T ss_pred -------------CCcccc---cCCHHHHHHHHHHHHh
Confidence 133333 2356666666666665
No 155
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.53 E-value=0.17 Score=36.29 Aligned_cols=76 Identities=11% Similarity=0.129 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCCC-------CCCCcE-EEeeccChHHhhcC-CCcceEEecCChhhHHHHHHhC
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIE-------NLPGNV-HIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYG 72 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-------~~~~~v-~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~g 72 (124)
|.+.+.++++.+.+.+.++++..++++.. ..+.++ .+.+-.+..++.+. ..||++|+.-.. .+.=|.+.|
T Consensus 192 p~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~~DSG-p~HlAaA~~ 270 (334)
T TIGR02195 192 PHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAKAVVTNDSG-LMHVAAALN 270 (334)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCCEEEeeCCH-HHHHHHHcC
Confidence 67888999999877778887776654311 122222 23444443332222 889999998866 577788999
Q ss_pred CCeeee
Q psy10186 73 IPIIGV 78 (124)
Q Consensus 73 ~P~l~~ 78 (124)
+|+|.+
T Consensus 271 ~P~i~l 276 (334)
T TIGR02195 271 RPLVAL 276 (334)
T ss_pred CCEEEE
Confidence 999986
No 156
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.50 E-value=0.49 Score=34.20 Aligned_cols=106 Identities=21% Similarity=0.161 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCC----CCCCCCcEEEe-eccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeec
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDS----IENLPGNVHIR-KWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVP 79 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~----~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P 79 (124)
....+++.|.+.| ++...+.. ..+...|+.+. +-++...++ -.|+++|.-||. ---||+..|+|.|.+=
T Consensus 205 ~~~~li~~l~k~g---iV~ipr~~~~~eife~~~n~i~pk~~vD~l~Ll--yya~lvig~ggT-MarEaAlLGtpaIs~~ 278 (346)
T COG1817 205 VLPDLIKELKKYG---IVLIPREKEQAEIFEGYRNIIIPKKAVDTLSLL--YYATLVIGAGGT-MAREAALLGTPAISCY 278 (346)
T ss_pred hHHHHHHHHHhCc---EEEecCchhHHHHHhhhccccCCcccccHHHHH--hhhheeecCCch-HHHHHHHhCCceEEec
Confidence 4566777777777 44444432 12233333332 345667777 569999988876 4679999999999972
Q ss_pred ccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 80 ~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
.+.-...-+++.+.|.-.... +..++.+...+.+.++
T Consensus 279 -pGkll~vdk~lie~G~~~~s~----~~~~~~~~a~~~l~~~ 315 (346)
T COG1817 279 -PGKLLAVDKYLIEKGLLYHST----DEIAIVEYAVRNLKYR 315 (346)
T ss_pred -CCccccccHHHHhcCceeecC----CHHHHHHHHHHHhhch
Confidence 233344455666666655433 3334444444444443
No 157
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.38 E-value=0.17 Score=35.59 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=24.9
Q ss_pred CCcceEEecCChhhHHHHHH------hCCCeeeec
Q psy10186 51 PNCRLFISHGGVNSALEAIH------YGIPIIGVP 79 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~------~g~P~l~~P 79 (124)
..+|++|+-||-||++.+++ .++|++.+.
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 46899999999999999986 478988874
No 158
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.29 E-value=0.19 Score=36.40 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCCC-------CCC----Cc-EEEeeccChHHhhcC-CCcceEEecCChhhHHHH
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIE-------NLP----GN-VHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEA 68 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-------~~~----~~-v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea 68 (124)
|.+.+.++++.|.+.++++++..|+++.. ..+ .+ +.+.+-.+..++.+. ..|+++|+.-.. .+.=|
T Consensus 198 p~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDTG-p~HlA 276 (348)
T PRK10916 198 PHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDSG-LMHVA 276 (348)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEecCCh-HHHHH
Confidence 67889999999887788887776654311 111 11 234444444442222 789999998765 57889
Q ss_pred HHhCCCeeee
Q psy10186 69 IHYGIPIIGV 78 (124)
Q Consensus 69 ~~~g~P~l~~ 78 (124)
.+.|+|++.+
T Consensus 277 aA~g~P~val 286 (348)
T PRK10916 277 AALNRPLVAL 286 (348)
T ss_pred HHhCCCEEEE
Confidence 9999999986
No 159
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.26 E-value=0.51 Score=34.04 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=64.5
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----------CCCCCcEEEeecc---ChHHhhcCCCcceEEecCC-hhhHHHHHHh
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----------ENLPGNVHIRKWI---PQQDVLAHPNCRLFISHGG-VNSALEAIHY 71 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----------~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~~gG-~~t~~ea~~~ 71 (124)
+..+.+...+.+..+.+.+.+... .+..+.+.+.+-- |....| ..||.++..+. .+-+.||+..
T Consensus 171 ~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~L--a~ad~i~VT~DSvSMvsEA~~t 248 (311)
T PF06258_consen 171 LDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFL--AAADAIVVTEDSVSMVSEAAAT 248 (311)
T ss_pred HHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHH--HhCCEEEEcCccHHHHHHHHHc
Confidence 334444445556566666555321 1123444333332 456667 77888776665 5777899999
Q ss_pred CCCeeeecccccH---HHHHHHHHHcCceeEecCC----CC-------CHHHHHHHHHHHh
Q psy10186 72 GIPIIGVPFYGDQ---LSHVRHIVDLGAGVELSYF----NI-------TLESIAWATSIVL 118 (124)
Q Consensus 72 g~P~l~~P~~~~q---~~~a~~~~~~g~g~~~~~~----~~-------~~~~l~~~l~~ll 118 (124)
|+|+.++|..... ....+.+++.|....+... .. +++.+++.|.+-+
T Consensus 249 G~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 249 GKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPLDETDRVAAEIRERL 309 (311)
T ss_pred CCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCccHHHHHHHHHHHHh
Confidence 9999999876521 1234556667777766532 11 2556666666543
No 160
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=93.86 E-value=0.43 Score=37.33 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=44.9
Q ss_pred hHHhhcCCCcceEEecC---C-hhhHHHHHHhCCCeeeecccccHHHHHHHHHH-c-CceeEecC-C--C--CCHHHHHH
Q psy10186 44 QQDVLAHPNCRLFISHG---G-VNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-L-GAGVELSY-F--N--ITLESIAW 112 (124)
Q Consensus 44 ~~~~l~~~~~d~~i~~g---G-~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~-~-g~g~~~~~-~--~--~~~~~l~~ 112 (124)
..+++ +.||+++..+ | ..+++||+++|+|+|.-...+ -...+..+.. . ..|+.+.+ + + .+.+++.+
T Consensus 468 y~E~~--~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~g-f~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFV--RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSG-FGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHh--hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcc-hhhhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 45556 8999999866 3 458999999999999964321 0111222222 2 24655542 1 1 24667777
Q ss_pred HHHHHhcC
Q psy10186 113 ATSIVLNN 120 (124)
Q Consensus 113 ~l~~ll~~ 120 (124)
++.+++..
T Consensus 545 ~m~~~~~~ 552 (590)
T cd03793 545 YMYEFCQL 552 (590)
T ss_pred HHHHHhCC
Confidence 77777743
No 161
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.81 E-value=0.24 Score=35.59 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCc--EEE-ee--ccChHHhhcCCCcceEEecCChhhHHHHHHh----CCC
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGN--VHI-RK--WIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIP 74 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~--v~~-~~--~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P 74 (124)
+....+.+.|.+.+..+.+--........+.. ... .+ ..+..+.. ..+|++|+=||-||++.+++. ++|
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dlvi~iGGDGTlL~aar~~~~~~iP 94 (305)
T PRK02649 17 RTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD--SSMKFAIVLGGDGTVLSAARQLAPCGIP 94 (305)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc--cCcCEEEEEeCcHHHHHHHHHhcCCCCc
Confidence 35567777778888877664321111010100 000 00 01112222 469999999999999999875 789
Q ss_pred eeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 75 IIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 75 ~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
++.+-. ..+|... +++.+++.+++++++++
T Consensus 95 ilGIN~-------------G~lGFLt---~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 95 LLTINT-------------GHLGFLT---EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred EEEEeC-------------CCCcccc---cCCHHHHHHHHHHHHcC
Confidence 998832 1133222 34567777777777654
No 162
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=93.72 E-value=0.45 Score=34.36 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCC---------CCCC-Cc-EEEeeccChHHhhcC-CCcceEEecCChhhHHHHH
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSI---------ENLP-GN-VHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAI 69 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~---------~~~~-~~-v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~ 69 (124)
|.+.+.++++.+.+.++++++..|+++. ...+ ++ +.+.+-.+..++.+. ..|+++|+.-+. .+.=|.
T Consensus 198 p~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSG-p~HlAa 276 (344)
T TIGR02201 198 DNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSV-PMHMAA 276 (344)
T ss_pred CHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCH-HHHHHH
Confidence 6788899999998778888877665411 1111 12 234444443332222 889999999654 688899
Q ss_pred HhCCCeeee
Q psy10186 70 HYGIPIIGV 78 (124)
Q Consensus 70 ~~g~P~l~~ 78 (124)
+.|+|+|.+
T Consensus 277 A~g~p~v~L 285 (344)
T TIGR02201 277 ALGTPLVAL 285 (344)
T ss_pred HcCCCEEEE
Confidence 999999986
No 163
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=93.46 E-value=0.14 Score=35.09 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCC-C--------CCCC-CcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHH
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDS-I--------ENLP-GNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIH 70 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~-~--------~~~~-~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~ 70 (124)
|.+.+.++++.+.+.++++++..++.+ . ...+ ..+.+.+-.+..++.+. ..||++|+.-+. .+.=|.+
T Consensus 122 p~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~Dtg-~~HlA~a 200 (247)
T PF01075_consen 122 PAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRADLVIGNDTG-PMHLAAA 200 (247)
T ss_dssp -HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTSSEEEEESSH-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcCCEEEecCCh-HHHHHHH
Confidence 678899999999988878776666643 0 1111 24555555554442222 789999998876 5888899
Q ss_pred hCCCeeee
Q psy10186 71 YGIPIIGV 78 (124)
Q Consensus 71 ~g~P~l~~ 78 (124)
.|+|+|.+
T Consensus 201 ~~~p~v~l 208 (247)
T PF01075_consen 201 LGTPTVAL 208 (247)
T ss_dssp TT--EEEE
T ss_pred HhCCEEEE
Confidence 99999997
No 164
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=93.05 E-value=0.93 Score=29.42 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=27.3
Q ss_pred cChHHhhcCCCcceE-EecCChhhHH---HHHHhCCCeeeeccc
Q psy10186 42 IPQQDVLAHPNCRLF-ISHGGVNSAL---EAIHYGIPIIGVPFY 81 (124)
Q Consensus 42 ~~~~~~l~~~~~d~~-i~~gG~~t~~---ea~~~g~P~l~~P~~ 81 (124)
.+...++. ..+|++ +-.||.||+. |++.+++|+++++..
T Consensus 82 ~~Rk~~m~-~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 82 FARNFILV-RSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred chHHHHHH-HHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 34555555 677875 5566778776 468899999998754
No 165
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=92.61 E-value=1.3 Score=27.69 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=46.8
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCC-CC--C---CcEEEee-ccChHHhhcCCCcce-EEecCChhhHHHHHHh-------
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSIE-NL--P---GNVHIRK-WIPQQDVLAHPNCRL-FISHGGVNSALEAIHY------- 71 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~~-~~--~---~~v~~~~-~~~~~~~l~~~~~d~-~i~~gG~~t~~ea~~~------- 71 (124)
.++.++..+.+-+++=+....... +. . ....... .......+. ..+|+ ++..||.||+.|....
T Consensus 2 ~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~-~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 2 GAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMI-ESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHH-HHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHH-HhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 466777777776666665443222 11 1 1222233 333444444 57777 4667788999887433
Q ss_pred --CC-Ceeeecc---cccHHHHHHHHHHcC
Q psy10186 72 --GI-PIIGVPF---YGDQLSHVRHIVDLG 95 (124)
Q Consensus 72 --g~-P~l~~P~---~~~q~~~a~~~~~~g 95 (124)
.+ |++++-. |.+-....+.+.+.|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g 110 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEG 110 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTT
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCC
Confidence 44 9988742 223233334455555
No 166
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.39 E-value=0.57 Score=33.89 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCCC-------CCCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHHhCC
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIE-------NLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYGI 73 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-------~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~g~ 73 (124)
|.+.+.++++.+.+.++++++..++++.+ ..+..+.+.+-.+..++... ..||++|+.-++ -+.=|.+.|+
T Consensus 193 p~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg-~~HlAaA~~~ 271 (334)
T COG0859 193 PLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGNDSG-PMHLAAALGT 271 (334)
T ss_pred CHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEEEccCCh-HHHHHHHcCC
Confidence 67889999999999997776666663311 12222225555554442221 789999988765 5777889999
Q ss_pred Ceeee
Q psy10186 74 PIIGV 78 (124)
Q Consensus 74 P~l~~ 78 (124)
|+|.+
T Consensus 272 P~I~i 276 (334)
T COG0859 272 PTIAL 276 (334)
T ss_pred CEEEE
Confidence 99997
No 167
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.16 E-value=0.55 Score=33.23 Aligned_cols=53 Identities=23% Similarity=0.425 Sum_probs=38.2
Q ss_pred CcceEEecCChhhHHHHHHh-CCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 52 NCRLFISHGGVNSALEAIHY-GIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea~~~-g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
.+|++|+=||-||++.+++. ..|++.+-. ..+|... +++.+++.+++++++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G~lGFL~---~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINM-------------GGLGFLT---EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------CCCccCc---ccCHHHHHHHHHHHHcC
Confidence 58999999999999999884 568877632 1123332 35678888888888764
No 168
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=91.49 E-value=0.32 Score=35.43 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=56.4
Q ss_pred HHhhCCCeEEEEEcCC---CC---CCCCCcEEEee-ccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccccH
Q psy10186 12 AFSRTGLTVLWRYEGD---SI---ENLPGNVHIRK-WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQ 84 (124)
Q Consensus 12 ~l~~~~~~~i~~~g~~---~~---~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q 84 (124)
.+.+.++.+++..-+. .. ....+++.... ..+..+++ ..+|++||--+. .+.|.+..++|++......|+
T Consensus 224 ~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll--~~aDiLITDySS-i~fD~~~l~KPiify~~D~~~ 300 (369)
T PF04464_consen 224 FLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLL--AAADILITDYSS-IIFDFLLLNKPIIFYQPDLEE 300 (369)
T ss_dssp HHHTTTEEEEE--SHHHHTT----TT-TTTEEE-TT-S-HHHHH--HT-SEEEESS-T-HHHHHGGGT--EEEE-TTTTT
T ss_pred HHhCCCcEEEEEeCchhhhchhhhhccCCcEEECCCCCCHHHHH--HhcCEEEEechh-HHHHHHHhCCCEEEEeccHHH
Confidence 4555566665554331 11 23456776544 44577888 789999999977 799999999999987655443
Q ss_pred HHHH----HHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 85 LSHV----RHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 85 ~~~a----~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
.... .-.++...|..+. +.++|.++|+..+++
T Consensus 301 Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~~~~~ 336 (369)
T PF04464_consen 301 YEKERGFYFDYEEDLPGPIVY----NFEELIEAIENIIEN 336 (369)
T ss_dssp TTTTSSBSS-TTTSSSS-EES----SHHHHHHHHTTHHHH
T ss_pred HhhccCCCCchHhhCCCceeC----CHHHHHHHHHhhhhC
Confidence 3111 0122334444444 788898888876643
No 169
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.47 E-value=0.86 Score=31.92 Aligned_cols=54 Identities=28% Similarity=0.296 Sum_probs=37.8
Q ss_pred CCcceEEecCChhhHHHHHH-hCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 51 PNCRLFISHGGVNSALEAIH-YGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~-~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
..+|++|+=||-||++.+++ .++|++.+... .+|... +++.+++.++++++++.
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G-------------~lGfl~---~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKAG-------------RLGFLS---SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeCC-------------CCcccc---ccCHHHHHHHHHHHHcC
Confidence 56899999999999999876 57888887321 133332 34567777777776643
No 170
>PLN02727 NAD kinase
Probab=90.64 E-value=3.5 Score=34.21 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=37.0
Q ss_pred CCcceEEecCChhhHHHHHHh----CCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 51 PNCRLFISHGGVNSALEAIHY----GIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
..+|++|+=||-||++.++.. ++|++.+-.. .+|-.. +++.+++.+.|.+++..
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGFLT---di~~ee~~~~L~~Il~G 799 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGFLT---SHYFEDFRQDLRQVIHG 799 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Cccccc---cCCHHHHHHHHHHHHcC
Confidence 579999999999999999775 5788887321 122222 34566666677766643
No 171
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=90.53 E-value=0.34 Score=39.27 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=49.1
Q ss_pred eccChHHhhcC-CCcceEEecC---Ch-hhHHHHHHhCCC---eeeecccccHHHHHHHHHHcC-ceeEecCCCCCHHHH
Q psy10186 40 KWIPQQDVLAH-PNCRLFISHG---GV-NSALEAIHYGIP---IIGVPFYGDQLSHVRHIVDLG-AGVELSYFNITLESI 110 (124)
Q Consensus 40 ~~~~~~~~l~~-~~~d~~i~~g---G~-~t~~ea~~~g~P---~l~~P~~~~q~~~a~~~~~~g-~g~~~~~~~~~~~~l 110 (124)
.+++..++.+. ..+|+++..+ |. .+..|++++|+| +++++.+ ...+.. .| .|+.+++ .+.+++
T Consensus 362 ~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~---l~~~allVnP--~D~~~l 433 (797)
T PLN03063 362 CSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS---LGAGALLVNP--WNITEV 433 (797)
T ss_pred CCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh---hcCCeEEECC--CCHHHH
Confidence 35666654433 8999999887 54 567799999999 4554332 222222 23 5777764 368899
Q ss_pred HHHHHHHhc
Q psy10186 111 AWATSIVLN 119 (124)
Q Consensus 111 ~~~l~~ll~ 119 (124)
+++|.++++
T Consensus 434 A~AI~~aL~ 442 (797)
T PLN03063 434 SSAIKEALN 442 (797)
T ss_pred HHHHHHHHh
Confidence 999999887
No 172
>PLN02929 NADH kinase
Probab=90.47 E-value=0.89 Score=32.71 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh---CCCeeeec
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY---GIPIIGVP 79 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~---g~P~l~~P 79 (124)
.+.++.+.+.|.+.++.+..+.. .+. .... ..+|++|+-||-||++.+++. ++|++.+-
T Consensus 33 ~~~~~~~~~~L~~~gi~~~~v~r-~~~---------------~~~~--~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN 94 (301)
T PLN02929 33 KDTVNFCKDILQQKSVDWECVLR-NEL---------------SQPI--RDVDLVVAVGGDGTLLQASHFLDDSIPVLGVN 94 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEEeec-ccc---------------cccc--CCCCEEEEECCcHHHHHHHHHcCCCCcEEEEE
Confidence 45566666777777776633321 110 1112 578999999999999998654 68999984
Q ss_pred ccc------cHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 80 FYG------DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 80 ~~~------~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
... +++.+... +....|.... .+.+++.++++++++.
T Consensus 95 ~Gp~~~~~~~~~~~~~~-~~r~lGfL~~---~~~~~~~~~L~~il~g 137 (301)
T PLN02929 95 SDPTQKDEVEEYSDEFD-ARRSTGHLCA---ATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCcccccccccccccc-cccCcccccc---CCHHHHHHHHHHHHcC
Confidence 431 12222211 1123555553 4688899999998864
No 173
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=89.90 E-value=1.3 Score=34.12 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCcceEEecCChhhHHHHHHh----CCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 51 PNCRLFISHGGVNSALEAIHY----GIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
..+|++|+=||-||++.++.. ++|++.+.. ..+|-. .+++.+++.++|++++++
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~-------------G~LGFL---t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSM-------------GSLGFM---TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC-------------CCccee---cccCHHHHHHHHHHHHcC
Confidence 468999999999999999774 467777621 113332 234677777777777654
No 174
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=89.83 E-value=3.5 Score=26.01 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCC-----------CCCCCCcEEEee-------ccChHHhhcCCCcceEEecCC--
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDS-----------IENLPGNVHIRK-------WIPQQDVLAHPNCRLFISHGG-- 61 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~-----------~~~~~~~v~~~~-------~~~~~~~l~~~~~d~~i~~gG-- 61 (124)
..++-++|.+.....+..+.+...-.+ +...+.+ .+.+ .+...-++ .+||++|-.=|
T Consensus 7 HtdWRe~I~~ga~~~~L~v~F~~PvtdH~~SD~~G~~iLG~e~~~-fw~D~k~a~iN~iRT~~li--~~aDvVVvrFGek 83 (141)
T PF11071_consen 7 HTDWREEIKEGAKAAGLPVEFTSPVTDHEASDDCGVDILGEEPNK-FWRDHKGAKINAIRTRTLI--EKADVVVVRFGEK 83 (141)
T ss_pred cchHHHHHHHHHHHcCCCeEEecCCCCchhhhhhhHHHhCCCCcc-ccccchhhhhhHHHHHHHH--hhCCEEEEEechH
Confidence 346678888888865554443322111 1112222 2222 22334455 89999999887
Q ss_pred ---hhhHHHH---HHhCCCeeeecccccHHHHHHHHHHcC-ce-eEecCCCCCHHHHHHHHHHHh
Q psy10186 62 ---VNSALEA---IHYGIPIIGVPFYGDQLSHVRHIVDLG-AG-VELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 62 ---~~t~~ea---~~~g~P~l~~P~~~~q~~~a~~~~~~g-~g-~~~~~~~~~~~~l~~~l~~ll 118 (124)
||+.+.| ++.|||.|++ ..+...+-+.+.. .+ .+.. +.+++.+.|+.++
T Consensus 84 YKQWNaAfDAg~a~AlgKplI~l----h~~~~~HpLKEvda~A~a~~e----t~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 84 YKQWNAAFDAGYAAALGKPLITL----HPEELHHPLKEVDAAALAVAE----TPEQVVEILRYVL 140 (141)
T ss_pred HHHHHHHhhHHHHHHcCCCeEEe----cchhccccHHHHhHhhHhhhC----CHHHHHHHHHHHh
Confidence 6777754 7899999998 2222223333331 11 2333 6788888777665
No 175
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.79 E-value=1.1 Score=34.92 Aligned_cols=54 Identities=26% Similarity=0.306 Sum_probs=38.2
Q ss_pred CCcceEEecCChhhHHHHHHh----CCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 51 PNCRLFISHGGVNSALEAIHY----GIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
..+|++|+-||-||++.+++. ++|++.+-.. .+|-.. +++.+++.+.++++++.
T Consensus 347 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G-------------~lGFL~---~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 347 EEISHIISIGGDGTVLRASKLVNGEEIPIICINMG-------------TVGFLT---EFSKEEIFKAIDSIISG 404 (569)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC-------------CCCcCc---ccCHHHHHHHHHHHHcC
Confidence 358999999999999999774 7798887331 123222 34677777777777754
No 176
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.64 E-value=0.49 Score=34.30 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=49.2
Q ss_pred EeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccccHHH--HHHHHHHc-CceeEecCCCCCHHHHHHHH
Q psy10186 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLS--HVRHIVDL-GAGVELSYFNITLESIAWAT 114 (124)
Q Consensus 38 ~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~--~a~~~~~~-g~g~~~~~~~~~~~~l~~~l 114 (124)
+..+-.+.+++ -.+|+.|-.+|. .+-.+.=.|||+|.+|-.+-|+. .|++=.++ |+.+.+-.+ ....-..+.
T Consensus 299 ~lsqqsfadiL--H~adaalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~--~aq~a~~~~ 373 (412)
T COG4370 299 WLSQQSFADIL--HAADAALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP--EAQAAAQAV 373 (412)
T ss_pred EEeHHHHHHHH--HHHHHHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC--chhhHHHHH
Confidence 34444455555 346666655554 34456778999999999887754 55555554 888776532 223333344
Q ss_pred HHHhcCCCC
Q psy10186 115 SIVLNNPRR 123 (124)
Q Consensus 115 ~~ll~~~~~ 123 (124)
++++.|+.+
T Consensus 374 q~ll~dp~r 382 (412)
T COG4370 374 QELLGDPQR 382 (412)
T ss_pred HHHhcChHH
Confidence 447877754
No 177
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.21 E-value=1.5 Score=31.16 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh---CCCeeeecc
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY---GIPIIGVPF 80 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~---g~P~l~~P~ 80 (124)
+...++.+.|.+.+..+.+...... ..+ ... ......... ..+|++|+-||-||+++++.. ++|++.+|.
T Consensus 16 ~~~~~I~~~L~~~g~~v~v~~~~~~--~~~-~~~---~~~~~~~~~-~~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 16 KLAYRVYDFLKVSGYEVVVDSETYE--HLP-EFS---EEDVLPLEE-MDVDFIIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhh--hcC-ccc---ccccccccc-cCCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 4567777788888888776421110 000 000 001011111 368999999999999999853 458888864
No 178
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=88.55 E-value=5.3 Score=26.43 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=30.6
Q ss_pred hHHhhcCCCcceE-EecCChhhHHHHHH---------hCCCeeeecc---cccHHHHHHHHHHcC
Q psy10186 44 QQDVLAHPNCRLF-ISHGGVNSALEAIH---------YGIPIIGVPF---YGDQLSHVRHIVDLG 95 (124)
Q Consensus 44 ~~~~l~~~~~d~~-i~~gG~~t~~ea~~---------~g~P~l~~P~---~~~q~~~a~~~~~~g 95 (124)
....+. ..+|+| +-.||.||+-|.+. +.+|++++-. +.+-....+.+.+.|
T Consensus 89 Rk~~m~-~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~g 152 (178)
T TIGR00730 89 RKAMMA-ELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEG 152 (178)
T ss_pred HHHHHH-HhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCC
Confidence 344444 678886 45667899988743 4999999732 222233344555555
No 179
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.51 E-value=3.2 Score=29.87 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh----CCCeeeec
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY----GIPIIGVP 79 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P 79 (124)
+.+.++.+.|.+.++.+.+...... ..+. . ... ...- ..+|++|+-||-||+++++.. ++|++.+.
T Consensus 19 ~~~~~i~~~L~~~g~~v~v~~~~~~--~~~~--~---~~~-~~~~--~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin 88 (305)
T PRK02645 19 EAAERCAKQLEARGCKVLMGPSGPK--DNPY--P---VFL-ASAS--ELIDLAIVLGGDGTVLAAARHLAPHDIPILSVN 88 (305)
T ss_pred HHHHHHHHHHHHCCCEEEEecCchh--hccc--c---chh-hccc--cCcCEEEEECCcHHHHHHHHHhccCCCCEEEEe
Confidence 4566777778788887655432111 1110 0 111 1111 568999999999999999864 78998885
Q ss_pred c
Q psy10186 80 F 80 (124)
Q Consensus 80 ~ 80 (124)
.
T Consensus 89 ~ 89 (305)
T PRK02645 89 V 89 (305)
T ss_pred c
Confidence 4
No 180
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=87.83 E-value=3.3 Score=32.36 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=57.4
Q ss_pred CCCCCcEEEeeccChHHhhcC-CCcceEEecCC---hhhHHHHHHhCCCeeeecccc--------------------cHH
Q psy10186 30 ENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGG---VNSALEAIHYGIPIIGVPFYG--------------------DQL 85 (124)
Q Consensus 30 ~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG---~~t~~ea~~~g~P~l~~P~~~--------------------~q~ 85 (124)
...|.-|.-++.+++.++... +++.++|-=|. .-+.+||+++|+|.|---... .|.
T Consensus 318 ~~~P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQh 397 (559)
T PF15024_consen 318 PNVPSFVKNHGILSGDEFQQLLRKAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQH 397 (559)
T ss_pred cccchhhhhcCcCCHHHHHHHHHhhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCC
Confidence 345666666777776663332 88999998885 358999999999988631110 122
Q ss_pred HHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCC
Q psy10186 86 SHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121 (124)
Q Consensus 86 ~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~ 121 (124)
.-++. ..|-=.+..-+.-+.+++.++|++++..+
T Consensus 398 PY~e~--~iG~PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 398 PYAEE--FIGEPHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred hHHHh--hCCCCeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 22221 12433333334457999999999999765
No 181
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=86.72 E-value=8 Score=29.84 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCC-C--------CCCCCcEEEeeccCh-HHhhcCCCcceEEecC-----ChhhHHHH
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDS-I--------ENLPGNVHIRKWIPQ-QDVLAHPNCRLFISHG-----GVNSALEA 68 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~-~--------~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~g-----G~~t~~ea 68 (124)
+.+.+.++.+-+.+.++++...++. . ...+.++.+.-+++. .....++.+|.++..+ |. |=+++
T Consensus 310 dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL-~ql~a 388 (487)
T COG0297 310 DLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGL-TQLYA 388 (487)
T ss_pred hHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcH-HHHHH
Confidence 3455556656556677766544432 1 124556766665553 3333348999988765 44 78899
Q ss_pred HHhCCCeeeecccc--c----HHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHh
Q psy10186 69 IHYGIPIIGVPFYG--D----QLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 69 ~~~g~P~l~~P~~~--~----q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll 118 (124)
+++|.+.|+.+..+ | -..+. ....|.|..+.+. +++++..++++-+
T Consensus 389 mryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf~f~~~--~~~~l~~al~rA~ 440 (487)
T COG0297 389 MRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGFLFLQT--NPDHLANALRRAL 440 (487)
T ss_pred HHcCCcceEcccCCccceecCccchh--ccCceeEEEEecC--CHHHHHHHHHHHH
Confidence 99999887776642 2 22222 4556888888643 8999999888754
No 182
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=85.75 E-value=6.9 Score=24.77 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHhhCC--CeEEEEEcCCC---------CCCCCCcEEEee-------ccChHHhhcCCCcceEEecCC--
Q psy10186 2 SDGMRTLLVTAFSRTG--LTVLWRYEGDS---------IENLPGNVHIRK-------WIPQQDVLAHPNCRLFISHGG-- 61 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~--~~~i~~~g~~~---------~~~~~~~v~~~~-------~~~~~~~l~~~~~d~~i~~gG-- 61 (124)
..++-++|.++..+.+ +.|.--+-... +...+.+ .+.+ -+...-++ ..||++|-.=|
T Consensus 10 HtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~~-fw~D~k~a~iNaiRT~~li--~~aDvvVvrFGek 86 (144)
T TIGR03646 10 HTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSN-FWRDDAAASINNIRTRKLI--EKADVVIALFGEK 86 (144)
T ss_pred cchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCcc-ccccccccchhhHHHHHHH--hhCCEEEEEechH
Confidence 3466788888888554 45433221111 1112222 2222 23344455 89999998887
Q ss_pred ---hhhHHHH---HHhCCCeeeecccccHHHHHHHHHHc-Cce-eEecCCCCCHHHHHHHHHHHh
Q psy10186 62 ---VNSALEA---IHYGIPIIGVPFYGDQLSHVRHIVDL-GAG-VELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 62 ---~~t~~ea---~~~g~P~l~~P~~~~q~~~a~~~~~~-g~g-~~~~~~~~~~~~l~~~l~~ll 118 (124)
||+.+.| ++.|||.|++- .+...+-+.+. ..+ .+.. +.+++.+.|+.++
T Consensus 87 YKQWNaAfDAg~aaAlgKplI~lh----~~~~~HpLKEvdaaA~avae----tp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 87 YKQWNAAFDAGYAAALGKPLIILR----PEELIHPLKEVDNKAQAVVE----TPEQAIETLKYIL 143 (144)
T ss_pred HHHHHHHhhHHHHHHcCCCeEEec----chhccccHHHHhHHHHHHhc----CHHHHHHHHHHhh
Confidence 6777654 78899999982 22222222222 111 1222 6777777776654
No 183
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=85.43 E-value=0.65 Score=37.25 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=50.5
Q ss_pred EEeeccChHHhhcC-CCcceEEecC---C-hhhHHHHHHhCCC---eeeecccccHHHHHHHHHHcCceeEecCCCCCHH
Q psy10186 37 HIRKWIPQQDVLAH-PNCRLFISHG---G-VNSALEAIHYGIP---IIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLE 108 (124)
Q Consensus 37 ~~~~~~~~~~~l~~-~~~d~~i~~g---G-~~t~~ea~~~g~P---~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~ 108 (124)
.+.+++++.++... +.+|+++..+ | ..++.|++++|+| .+++. +...-+..+. .|+.+++ .+.+
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls---~~~G~~~~l~---~~llv~P--~d~~ 416 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILS---EMAGAAAELA---EALLVNP--NDIE 416 (726)
T ss_pred EEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEe---cccchhHHhC---cCeEECC--CCHH
Confidence 45567888775544 8999999876 4 4578899999775 33332 2212222222 3677765 3588
Q ss_pred HHHHHHHHHhcCC
Q psy10186 109 SIAWATSIVLNNP 121 (124)
Q Consensus 109 ~l~~~l~~ll~~~ 121 (124)
+++++|.++++.+
T Consensus 417 ~la~ai~~~l~~~ 429 (726)
T PRK14501 417 GIAAAIKRALEMP 429 (726)
T ss_pred HHHHHHHHHHcCC
Confidence 8999999988754
No 184
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=84.63 E-value=11 Score=27.46 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCC--CCC-cE--EEe---ecc---C----------------hHHhhcCCCcceEEec
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSIEN--LPG-NV--HIR---KWI---P----------------QQDVLAHPNCRLFISH 59 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~~~--~~~-~v--~~~---~~~---~----------------~~~~l~~~~~d~~i~~ 59 (124)
.++++.|.+.+++++|+......+. .+. ++ ... ++- + -..++...+-|+++++
T Consensus 19 la~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~ 98 (352)
T PRK12446 19 LAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSK 98 (352)
T ss_pred HHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 3567788888899999875543211 111 11 111 110 0 0112334678999999
Q ss_pred CChhh---HHHHHHhCCCeeee
Q psy10186 60 GGVNS---ALEAIHYGIPIIGV 78 (124)
Q Consensus 60 gG~~t---~~ea~~~g~P~l~~ 78 (124)
||+-+ ++.|...|+|+++.
T Consensus 99 Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 99 GGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CchhhHHHHHHHHHcCCCEEEE
Confidence 99975 89999999999986
No 185
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=84.57 E-value=1.4 Score=30.73 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=25.1
Q ss_pred CCcceEEecCChhhHHHHHHh----CCCeeeecc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY----GIPIIGVPF 80 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P~ 80 (124)
..+|++|+-||-||++.+++. ++|++.+..
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 568999999999999988765 679888744
No 186
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=84.49 E-value=4.3 Score=24.10 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCC---CCCCCCcEE
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDS---IENLPGNVH 37 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~---~~~~~~~v~ 37 (124)
..+.++++++.+++..+|+..+... ....|+|++
T Consensus 61 ~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~lP~nVR 97 (97)
T PF06722_consen 61 PLLRRLLEALAGLDVEVVVALPAAQRAELGELPDNVR 97 (97)
T ss_dssp CHHHHHHHHHHTSSSEEEEEETTCCCGGCCS-TTTEE
T ss_pred HHHHHHHHHHhhCCcEEEEECCHHHHHhhCCCCCCCC
Confidence 3688999999999999999998865 345788875
No 187
>KOG1111|consensus
Probab=84.14 E-value=6 Score=29.50 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=48.6
Q ss_pred HHHHHHHHH-hhC-CCeEEEEEcCCCC---------CCCCCcEEEeeccChHHhhcC-CCcceEEecCCh----hhHHHH
Q psy10186 5 MRTLLVTAF-SRT-GLTVLWRYEGDSI---------ENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGV----NSALEA 68 (124)
Q Consensus 5 ~~~~~~~~l-~~~-~~~~i~~~g~~~~---------~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~----~t~~ea 68 (124)
++.+++..+ .+. +++|++...+.+. ....+.+.+.+-+++.++-.- .+=|+|+..+=. .++.||
T Consensus 212 ll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEA 291 (426)
T KOG1111|consen 212 LLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEA 291 (426)
T ss_pred HHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHH
Confidence 444555544 434 4688776544321 125677889999987663221 677888887742 467899
Q ss_pred HHhCCCeeee
Q psy10186 69 IHYGIPIIGV 78 (124)
Q Consensus 69 ~~~g~P~l~~ 78 (124)
+++|+|++.-
T Consensus 292 aScGL~VVsT 301 (426)
T KOG1111|consen 292 ASCGLPVVST 301 (426)
T ss_pred HhCCCEEEEe
Confidence 9999999973
No 188
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=83.88 E-value=4.3 Score=32.14 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=39.1
Q ss_pred cChHHhhcCCCcceEEecC-----ChhhHHHHHHhCCCeeeecccccHHHHHHHH-------HHcCceeEecCCCCCHHH
Q psy10186 42 IPQQDVLAHPNCRLFISHG-----GVNSALEAIHYGIPIIGVPFYGDQLSHVRHI-------VDLGAGVELSYFNITLES 109 (124)
Q Consensus 42 ~~~~~~l~~~~~d~~i~~g-----G~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~-------~~~g~g~~~~~~~~~~~~ 109 (124)
++..+++ ..||+-|..+ |+ |.+|+.++|+|.|.--+. ....++ ...|+- +++..+-+.++
T Consensus 461 l~Y~dfv--~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLs----GFG~~~~~~~~~~~~~GV~-VvdR~~~n~~e 532 (633)
T PF05693_consen 461 LDYYDFV--RGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLS----GFGCWMQEHIEDPEEYGVY-VVDRRDKNYDE 532 (633)
T ss_dssp S-HHHHH--HHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTB----HHHHHHHTTS-HHGGGTEE-EE-SSSS-HHH
T ss_pred CCHHHHh--ccCceeeeccccccccC-ChHHHhhcCCceeeccch----hHHHHHHHhhccCcCCcEE-EEeCCCCCHHH
Confidence 3567777 7899999888 77 899999999999996332 222222 223443 34445556666
Q ss_pred HHHHHHHHh
Q psy10186 110 IAWATSIVL 118 (124)
Q Consensus 110 l~~~l~~ll 118 (124)
..+.+.+.+
T Consensus 533 ~v~~la~~l 541 (633)
T PF05693_consen 533 SVNQLADFL 541 (633)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 189
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=82.93 E-value=5.1 Score=30.87 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=53.7
Q ss_pred EEEeeccChHHhhcC-CCcceEEecC---ChhhH-HHHHHhCC----CeeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 36 VHIRKWIPQQDVLAH-PNCRLFISHG---GVNSA-LEAIHYGI----PIIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 36 v~~~~~~~~~~~l~~-~~~d~~i~~g---G~~t~-~ea~~~g~----P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
+.+.+.+|..++.+. ..+|+++..+ |.|.+ .|.++++. |+|+- +--.-+ +.+.-++.++| .+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILS----efaGaa---~~l~~AllVNP--~d 434 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLS----EFAGAA---VELKGALLTNP--YD 434 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEe----ccccch---hhcCCCEEECC--CC
Confidence 456778888876654 8999998887 76644 59999987 54442 322333 34445777765 47
Q ss_pred HHHHHHHHHHHhcCC
Q psy10186 107 LESIAWATSIVLNNP 121 (124)
Q Consensus 107 ~~~l~~~l~~ll~~~ 121 (124)
.++++++|.+.++.|
T Consensus 435 ~~~~A~ai~~AL~m~ 449 (487)
T TIGR02398 435 PVRMDETIYVALAMP 449 (487)
T ss_pred HHHHHHHHHHHHcCC
Confidence 899999999988765
No 190
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.28 E-value=5 Score=28.27 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=24.8
Q ss_pred CCcceEEecCChhhHHHHHH----hCCCeeeec
Q psy10186 51 PNCRLFISHGGVNSALEAIH----YGIPIIGVP 79 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~----~g~P~l~~P 79 (124)
..+|++|+=||-||++.+++ .++|++.+.
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN 64 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGIN 64 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEe
Confidence 56899999999999998875 467988874
No 191
>KOG2941|consensus
Probab=81.83 E-value=19 Score=26.88 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHh---------hCCC-eEE-EEEcCCCCCC---------CCCcEE-EeeccC---hHHhhcCCCcceEE
Q psy10186 2 SDGMRTLLVTAFS---------RTGL-TVL-WRYEGDSIEN---------LPGNVH-IRKWIP---QQDVLAHPNCRLFI 57 (124)
Q Consensus 2 ~~~~~~~~~~~l~---------~~~~-~~i-~~~g~~~~~~---------~~~~v~-~~~~~~---~~~~l~~~~~d~~i 57 (124)
|+|-+.-+++++. ..++ +++ +++|+....+ .-.++. ...|.. .--++ ++||+-|
T Consensus 266 pDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll--~saDlGV 343 (444)
T KOG2941|consen 266 PDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLL--ASADLGV 343 (444)
T ss_pred CcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHh--hccccce
Confidence 4556666666665 2222 344 4556544221 123343 345654 33356 6788744
Q ss_pred --ecCCh-----hhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 58 --SHGGV-----NSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 58 --~~gG~-----~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
+.+.. .-+.+-.=+|+|++.+ +....-+.+++...|.++. +++++.+.++-+++
T Consensus 344 cLHtSSSGLDLPMKVVDMFGcglPvcA~----~fkcl~ELVkh~eNGlvF~----Ds~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 344 CLHTSSSGLDLPMKVVDMFGCGLPVCAV----NFKCLDELVKHGENGLVFE----DSEELAEQLQMLFK 404 (444)
T ss_pred EeeecCcccCcchhHHHhhcCCCceeee----cchhHHHHHhcCCCceEec----cHHHHHHHHHHHHh
Confidence 34433 3466777889999997 5566666777778999998 89999998888876
No 192
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=80.63 E-value=0.72 Score=30.28 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=23.5
Q ss_pred cCCCcceEEecCChhhHHHHHHhCCCeeeecccc
Q psy10186 49 AHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYG 82 (124)
Q Consensus 49 ~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~ 82 (124)
....+|++||+||....+.... ++|++-+|...
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4489999999999988888877 99999998753
No 193
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=80.44 E-value=16 Score=25.78 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCC---CC-------------------------C-CcEE-EeeccC---hHHhhcCCC
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIE---NL-------------------------P-GNVH-IRKWIP---QQDVLAHPN 52 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~---~~-------------------------~-~~v~-~~~~~~---~~~~l~~~~ 52 (124)
+++.++.+.+.+-+++..+|.++.. .. + .++. ..+.+. ...++...+
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~~ 196 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQYR 196 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHHhC
Confidence 5667777778888888888886521 11 1 1111 111121 222343478
Q ss_pred cceEEecCChhh------HHHHHHhCCCeeeecc
Q psy10186 53 CRLFISHGGVNS------ALEAIHYGIPIIGVPF 80 (124)
Q Consensus 53 ~d~~i~~gG~~t------~~ea~~~g~P~l~~P~ 80 (124)
+|++||.-..++ +.-|...|+|+|++-+
T Consensus 197 id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~R 230 (257)
T COG2099 197 IDVVVTKNSGGAGGTYEKIEAARELGIPVIMIER 230 (257)
T ss_pred CCEEEEccCCcccCcHHHHHHHHHcCCcEEEEec
Confidence 999999876555 6678899999999833
No 194
>KOG4180|consensus
Probab=78.82 E-value=1.1 Score=32.63 Aligned_cols=28 Identities=36% Similarity=0.424 Sum_probs=25.2
Q ss_pred CCcceEEecCChhhHHHHHH----hCCCeeee
Q psy10186 51 PNCRLFISHGGVNSALEAIH----YGIPIIGV 78 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~----~g~P~l~~ 78 (124)
+.+|++|+-||-||++-|.. -.+|+|.+
T Consensus 104 ~waD~VisvGGDGTfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 104 RWADMVISVGGDGTFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred chhhEEEEecCccceeehhhhhhccCCceeee
Confidence 89999999999999998866 57899988
No 195
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=78.30 E-value=24 Score=25.83 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccCh-------------H--------------Hhh-cC-CCcce
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQ-------------Q--------------DVL-AH-PNCRL 55 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~-------------~--------------~~l-~~-~~~d~ 55 (124)
.+..++++|.+.|+++.+.+..+... .+.++.++.+-+. . ..+ .. -.-|+
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdv 90 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAP-PPGGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDV 90 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCC-CCCCeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 46789999999999998887665422 1223444433211 1 001 11 25799
Q ss_pred EEecCChhhHHHH--HHhCCCeee
Q psy10186 56 FISHGGVNSALEA--IHYGIPIIG 77 (124)
Q Consensus 56 ~i~~gG~~t~~ea--~~~g~P~l~ 77 (124)
+++|.|++..+-. ...+.|++.
T Consensus 91 i~~h~~~~~~~~l~~~~~~~~~v~ 114 (396)
T cd03818 91 IVAHPGWGETLFLKDVWPDAPLIG 114 (396)
T ss_pred EEECCccchhhhHHHhCCCCCEEE
Confidence 9999998644332 234678776
No 196
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=76.12 E-value=10 Score=26.97 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=36.5
Q ss_pred CCcceEEecCChhhHHHHHHhCC----CeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 51 PNCRLFISHGGVNSALEAIHYGI----PIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~g~----P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
..+|+++.=||-||++.+...-. |++.+-.. .+|-.. ++..+++.+.+.++++
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~G-------------~lGFLt---~~~~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGINLG-------------HLGFLT---DFEPDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEeCC-------------Cccccc---ccCHHHHHHHHHHHhc
Confidence 67999999999999998876544 88876211 133333 3456777777777765
No 197
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=75.52 E-value=20 Score=26.18 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=57.0
Q ss_pred CCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCc-eeEecC------CC
Q psy10186 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGA-GVELSY------FN 104 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~-g~~~~~------~~ 104 (124)
..++..++-|++...-.. +.+|+++|.+-+--+.|.+.-+.++|.+| ||..-.....+.|. -+++++ +.
T Consensus 120 ~~P~~~vV~YvNtsA~vK-A~~Di~cTSsNAvkvVe~~~~~~~Iif~P---D~~Lg~yva~~tg~k~ii~w~G~C~VH~~ 195 (324)
T COG0379 120 KHPDAPVVTYVNTSAEVK-AEADICCTSSNAVKVVESALDGDKILFLP---DKNLGRYVAKQTGAKKIILWPGHCIVHEE 195 (324)
T ss_pred HCCCCceEEEeeChHHHH-hhcCeEEecchHHHHHHhccCCCcEEEcC---cHHHHHHHHHHcCCCcEEEECCccchhhh
Confidence 345788889998776565 78899999998888999886678888886 88776666666677 455554 35
Q ss_pred CCHHHHHH
Q psy10186 105 ITLESIAW 112 (124)
Q Consensus 105 ~~~~~l~~ 112 (124)
++.+++.+
T Consensus 196 ft~~~i~~ 203 (324)
T COG0379 196 FTAEDIEE 203 (324)
T ss_pred cCHHHHHH
Confidence 67777765
No 198
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=74.65 E-value=27 Score=26.89 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=53.5
Q ss_pred cCCCcceEEecCCh--------------hhHHHHHHhCCCeeee-----cccccHHHHHHHHHHc-Ccee-EecCCCCCH
Q psy10186 49 AHPNCRLFISHGGV--------------NSALEAIHYGIPIIGV-----PFYGDQLSHVRHIVDL-GAGV-ELSYFNITL 107 (124)
Q Consensus 49 ~~~~~d~~i~~gG~--------------~t~~ea~~~g~P~l~~-----P~~~~q~~~a~~~~~~-g~g~-~~~~~~~~~ 107 (124)
.|+-..++||.-|. -++.|.-..|||++++ |...+-...+..+++. ++-+ .++-.+++.
T Consensus 143 dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~ 222 (492)
T PF09547_consen 143 DHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLRE 222 (492)
T ss_pred cCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCH
Confidence 36778889999886 4577888899999997 4444556666666654 7764 445567889
Q ss_pred HHHHHHHHHHhcC
Q psy10186 108 ESIAWATSIVLNN 120 (124)
Q Consensus 108 ~~l~~~l~~ll~~ 120 (124)
+++...++++|-.
T Consensus 223 ~DI~~Il~~vLyE 235 (492)
T PF09547_consen 223 EDITRILEEVLYE 235 (492)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998743
No 199
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=73.99 E-value=4.5 Score=24.55 Aligned_cols=63 Identities=8% Similarity=0.093 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCC----CCCCcEEEee-------ccChHHhhcC-CCcceEEecCChhhHHHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIE----NLPGNVHIRK-------WIPQQDVLAH-PNCRLFISHGGVNSALEA 68 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~----~~~~~v~~~~-------~~~~~~~l~~-~~~d~~i~~gG~~t~~ea 68 (124)
...+++++++.|++++.+....+.. ...+...+.+ |++...++.. .+..+...|+|+|-+.|.
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~ 88 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSEN 88 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTH
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHH
Confidence 4567889999999998887664321 1233444443 5666554432 233556678888765554
No 200
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=72.27 E-value=37 Score=25.09 Aligned_cols=112 Identities=14% Similarity=-0.008 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEe-cCChhhHHHHHHhCCCeeeec
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFIS-HGGVNSALEAIHYGIPIIGVP 79 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~-~gG~~t~~ea~~~g~P~l~~P 79 (124)
++.+.+.+.++...+.|.++.+.+..--.... ...+....+-+....+|.+|- -.|..-++.-....+|+.+-+
T Consensus 46 fs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~-----~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~ 120 (347)
T COG0826 46 FSVEDLAEAVELAHSAGKKVYVAVNTLLHNDE-----LETLERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVST 120 (347)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccccccch-----hhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCCcEEEee
Confidence 35667888888888999888777754321111 111223222222256777654 344433333334458888876
Q ss_pred cc-ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHH
Q psy10186 80 FY-GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIV 117 (124)
Q Consensus 80 ~~-~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~l 117 (124)
.. ..-..-++...++|+-+++.+..++.+++.+..++.
T Consensus 121 q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 121 QANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred eEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 54 355667888899998899998999999999888775
No 201
>PRK10537 voltage-gated potassium channel; Provisional
Probab=70.99 E-value=39 Score=25.37 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCCCCCCcE-EEeeccChHHhhcC---CCcceEEecCCh---h--hHHHHHHhC--CC
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNV-HIRKWIPQQDVLAH---PNCRLFISHGGV---N--SALEAIHYG--IP 74 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v-~~~~~~~~~~~l~~---~~~d~~i~~gG~---~--t~~ea~~~g--~P 74 (124)
-..+++.|.+.+.+++++.........+++. .+.+...+.+.+.. .+|+.+|.-.+. + .+..+-..+ ++
T Consensus 252 g~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~k 331 (393)
T PRK10537 252 AINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVK 331 (393)
T ss_pred HHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCc
Confidence 3556777777777776665331111111222 23444444444421 677777775542 1 122222223 23
Q ss_pred eeeecccccHHHHHHHHHHcCceeEecCCCCCHHHH
Q psy10186 75 IIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESI 110 (124)
Q Consensus 75 ~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l 110 (124)
++.. .+...|.+.+.+.|+-.++.+.....+.+
T Consensus 332 IIa~---v~~~~~~~~L~~~GaD~VIsp~~l~g~~l 364 (393)
T PRK10537 332 TVAA---VNDSKNLEKIKRVHPDMIFSPQLLGSELL 364 (393)
T ss_pred EEEE---ECCHHHHHHHHhcCCCEEECHHHHHHHHH
Confidence 4432 45567899999999999997544433333
No 202
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=70.85 E-value=5.7 Score=28.16 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=25.4
Q ss_pred CCcceEEecCChhhHHHHHHh----CCCeeeecc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY----GIPIIGVPF 80 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P~ 80 (124)
..+|++|+-||-||++.++.. ++|++.++.
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred cCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 899999999999999999764 568888864
No 203
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=69.81 E-value=27 Score=22.56 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccChH-H-----hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQQ-D-----VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~~-~-----~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++...++.. +. ...+++++...... . -++ ..+..++++|+|. +.+
T Consensus 3 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l 82 (164)
T cd07039 3 ADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL 82 (164)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH
Confidence 357889999999988887666531 11 11345554433211 1 111 1456677888774 467
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|...+.|+|++.
T Consensus 83 ~~A~~~~~Pvl~I~ 96 (164)
T cd07039 83 YDAKRDRAPVLAIA 96 (164)
T ss_pred HHHHhcCCCEEEEe
Confidence 79999999999984
No 204
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=69.15 E-value=46 Score=24.93 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCC----C----C---------CCCCc--EEEeeccChHH---hhcCCCcceEEecC
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDS----I----E---------NLPGN--VHIRKWIPQQD---VLAHPNCRLFISHG 60 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~----~----~---------~~~~~--v~~~~~~~~~~---~l~~~~~d~~i~~g 60 (124)
+..+..+++++.+.+..+..-+.... . . ...++ +.+..|+||.+ +| -.||+-+-.|
T Consensus 194 ~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LL--w~cD~NfVRG 271 (374)
T PF10093_consen 194 NAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLL--WACDFNFVRG 271 (374)
T ss_pred chHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHH--HhCccceEec
Confidence 45578889999877654444332211 1 0 12333 56788998754 67 7899988888
Q ss_pred ChhhHHHHHHhCCCeeeeccc
Q psy10186 61 GVNSALEAIHYGIPIIGVPFY 81 (124)
Q Consensus 61 G~~t~~ea~~~g~P~l~~P~~ 81 (124)
=- |+.-|.-.|+|+|--.+.
T Consensus 272 ED-SfVRAqwAgkPFvWhIYp 291 (374)
T PF10093_consen 272 ED-SFVRAQWAGKPFVWHIYP 291 (374)
T ss_pred ch-HHHHHHHhCCCceEecCc
Confidence 66 899999999999986544
No 205
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=67.59 E-value=22 Score=25.65 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=47.8
Q ss_pred CCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCC------CC
Q psy10186 32 LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYF------NI 105 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~------~~ 105 (124)
..++..++-|++-..-.. +.+|+++|.+-+-.+.+.+-.+++++.+| ||..-...-++.|--+.+++. .+
T Consensus 97 ~~p~~~vV~YVNssAevK-A~sdi~cTSsNA~kIv~~l~~~~~IlF~P---D~nLG~~v~~~~~k~ii~w~G~C~VH~~f 172 (296)
T PF02445_consen 97 EYPDAAVVTYVNSSAEVK-AESDICCTSSNAVKIVRSLPQDKKILFLP---DKNLGRYVARQTGKNIILWPGYCPVHERF 172 (296)
T ss_dssp HSTTS-EEEESSS-HHHH-TT-SEEE-TTTHHHHHHCSS-SE-EEEES----HHHHHHHHHHH--EEEESSSS--TGGG-
T ss_pred HCCCCeEEEEecChHHHH-ccCCeEEECccHHHHHHHhcCCCeEEEcC---cHHHHHHHHHhhCCeEEEECCCccccccc
Confidence 356788899998776666 68999999999999999998899999997 766544444444555666643 34
Q ss_pred CHHHHHH
Q psy10186 106 TLESIAW 112 (124)
Q Consensus 106 ~~~~l~~ 112 (124)
+.+++.+
T Consensus 173 ~~~~i~~ 179 (296)
T PF02445_consen 173 TPEDIEK 179 (296)
T ss_dssp -HHHHHH
T ss_pred CHHHHHH
Confidence 5555544
No 206
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=67.52 E-value=18 Score=25.50 Aligned_cols=47 Identities=23% Similarity=0.107 Sum_probs=28.3
Q ss_pred cEEEeeccChHHhhcC-CCcceEEecCChh--------h-------HHHHHHhCCCeeeeccc
Q psy10186 35 NVHIRKWIPQQDVLAH-PNCRLFISHGGVN--------S-------ALEAIHYGIPIIGVPFY 81 (124)
Q Consensus 35 ~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~--------t-------~~ea~~~g~P~l~~P~~ 81 (124)
++.-++.....+++.. .++|++|.-||.. + ..-|...|+|++.++..
T Consensus 46 ~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 46 GVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred CceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 5555554444343322 7899999877731 1 12344679999998763
No 207
>PRK13054 lipid kinase; Reviewed
Probab=67.02 E-value=37 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=24.4
Q ss_pred CCcceEEecCChhhHHHHHHh------C--CCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY------G--IPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~------g--~P~l~~P~~ 81 (124)
...|.+|.-||-||+.|.+.. + .|+-++|..
T Consensus 55 ~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 55 LGVATVIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 568999999999999888644 2 477778873
No 208
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=66.95 E-value=47 Score=24.21 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHhh-CC-CeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeee
Q psy10186 1 MSDGMRTLLVTAFSR-TG-LTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 1 l~~~~~~~~~~~l~~-~~-~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~ 78 (124)
++.+.++.+++.+.+ +. ..+++..|+- |+++..-.|..-.+.+....+.+++...|. .+.+++..+ |.++-
T Consensus 111 is~~~~~~~l~~~~~~l~~~d~VvlsGSl-----P~g~~~d~y~~li~~~~~~g~~vilD~Sg~-~L~~~L~~~-P~lIK 183 (310)
T COG1105 111 ISEAELEQFLEQLKALLESDDIVVLSGSL-----PPGVPPDAYAELIRILRQQGAKVILDTSGE-ALLAALEAK-PWLIK 183 (310)
T ss_pred CCHHHHHHHHHHHHHhcccCCEEEEeCCC-----CCCCCHHHHHHHHHHHHhcCCeEEEECChH-HHHHHHccC-CcEEe
Confidence 356778888888877 43 4665555532 333332333333444433566677777776 566777777 99999
Q ss_pred cccc--------------cHHHHHHHHHHcCce
Q psy10186 79 PFYG--------------DQLSHVRHIVDLGAG 97 (124)
Q Consensus 79 P~~~--------------~q~~~a~~~~~~g~g 97 (124)
|... |+...|+.+...|+-
T Consensus 184 PN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~ 216 (310)
T COG1105 184 PNREELEALFGRELTTLEDVIKAARELLAEGIE 216 (310)
T ss_pred cCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCC
Confidence 9742 456666666666655
No 209
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=66.71 E-value=23 Score=27.37 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=47.3
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCCCCcEEEeeccCh-HHh-----hc--CCCcceEEecCChh------hHHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENLPGNVHIRKWIPQ-QDV-----LA--HPNCRLFISHGGVN------SALE 67 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~~~~v~~~~~~~~-~~~-----l~--~~~~d~~i~~gG~~------t~~e 67 (124)
-+.+++.|.+.|++.++.+.++.. .....+++++.-... ... ++ ..+..++++|+|.| .+.+
T Consensus 15 a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~ 94 (530)
T PRK07092 15 RDATIDLLRRFGITTVFGNPGSTELPFLRDFPDDFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFT 94 (530)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhhcCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHH
Confidence 577899999999999888766541 222233444432221 111 10 14566778887754 7889
Q ss_pred HHHhCCCeeee
Q psy10186 68 AIHYGIPIIGV 78 (124)
Q Consensus 68 a~~~g~P~l~~ 78 (124)
|..-+.|+|++
T Consensus 95 A~~~~~Pvl~i 105 (530)
T PRK07092 95 AFKNHTPLVIT 105 (530)
T ss_pred HhhcCCCEEEE
Confidence 99999999998
No 210
>PRK06270 homoserine dehydrogenase; Provisional
Probab=66.58 E-value=35 Score=24.93 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=37.8
Q ss_pred ChHHhhcCCCcceEEec------CC---hhhHHHHHHhCCCeeee---cccccHHHHHHHHHHcCceeEec
Q psy10186 43 PQQDVLAHPNCRLFISH------GG---VNSALEAIHYGIPIIGV---PFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 43 ~~~~~l~~~~~d~~i~~------gG---~~t~~ea~~~g~P~l~~---P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
+..+++..+..|++|-- ++ ..-+.+++..|+++++- |....-....+..++.|....+.
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence 55667755678887662 22 33457999999999994 55443344445555667766553
No 211
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=64.47 E-value=30 Score=22.36 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=44.5
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC-------CCCCCcEEEeeccChHH-h-----h--cCCCcceEEecCCh------hh
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI-------ENLPGNVHIRKWIPQQD-V-----L--AHPNCRLFISHGGV------NS 64 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~-------~~~~~~v~~~~~~~~~~-~-----l--~~~~~d~~i~~gG~------~t 64 (124)
-+.+++.|.+.|++.++.+.++.. .+.+ .++++.-..... . + ...+..+++++.|. +.
T Consensus 4 ~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~-~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~ 82 (172)
T PF02776_consen 4 AEALAEALKANGVTHVFGVPGSGNLPLLDALEKSP-GIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTG 82 (172)
T ss_dssp HHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTT-TSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHH
T ss_pred HHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhc-ceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHH
Confidence 467899999999988887766431 1122 466555433211 0 0 11556778888764 56
Q ss_pred HHHHHHhCCCeeeecc
Q psy10186 65 ALEAIHYGIPIIGVPF 80 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P~ 80 (124)
+.+|...+.|+|++.-
T Consensus 83 l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 83 LANAYADRIPVLVITG 98 (172)
T ss_dssp HHHHHHTT-EEEEEEE
T ss_pred HhhcccceeeEEEEec
Confidence 7789999999999854
No 212
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=63.34 E-value=3.8 Score=24.64 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccC--hHHhhcCCCcceEE---ec--CChhhHHHH---HHhCC
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIP--QQDVLAHPNCRLFI---SH--GGVNSALEA---IHYGI 73 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i---~~--gG~~t~~ea---~~~g~ 73 (124)
+...++.+.|++.+..+..-...+...+. .+......+- ....+ .+||++| +. .+.||..|. ...|+
T Consensus 14 ~~~~~~~~~L~~~g~~v~~P~~~~~~~~~-~~~~~~~~i~~~d~~~i--~~~D~via~l~~~~~d~Gt~~ElG~A~algk 90 (113)
T PF05014_consen 14 ARVERLREALEKNGFEVYSPQDNDENDEE-DSQEWAREIFERDLEGI--RECDIVIANLDGFRPDSGTAFELGYAYALGK 90 (113)
T ss_dssp HHHHHHHHHHHTTTTEEEGGCTCSSS--T-TSHHCHHHHHHHHHHHH--HHSSEEEEEECSSS--HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCEEEecccccccccc-ccchHHHHHHHHHHHHH--HHCCEEEEECCCCCCCCcHHHHHHHHHHCCC
Confidence 45677888888888855422211111101 1111111111 22234 6788854 33 478999985 77899
Q ss_pred Ceeeeccc
Q psy10186 74 PIIGVPFY 81 (124)
Q Consensus 74 P~l~~P~~ 81 (124)
|++++-..
T Consensus 91 pv~~~~~d 98 (113)
T PF05014_consen 91 PVILLTED 98 (113)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99998544
No 213
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=62.99 E-value=43 Score=22.75 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=17.2
Q ss_pred CCcceE-EecCChhhHHHH---HHhCC-Cee
Q psy10186 51 PNCRLF-ISHGGVNSALEA---IHYGI-PII 76 (124)
Q Consensus 51 ~~~d~~-i~~gG~~t~~ea---~~~g~-P~l 76 (124)
..+|++ +-.||.||+-|. +..++ |..
T Consensus 109 ~~ada~V~~pGG~GTleEl~e~lt~~q~g~~ 139 (205)
T COG1611 109 RSADAFIVLPGGFGTLEELFEALTLGQTGVH 139 (205)
T ss_pred HhCCEEEEeCCCcchHHHHHHHHHHhhCCcc
Confidence 789986 556678998665 44444 444
No 214
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=62.84 E-value=33 Score=24.34 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh--CCCeeeecc
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY--GIPIIGVPF 80 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~--g~P~l~~P~ 80 (124)
.+..+++.+++.+-.++.||...+.. .-.++.++++...+- ..-+.++-.+-..+++-++.. |++.+.-|.
T Consensus 48 ~~Ra~dL~~a~~d~~i~aI~~~rGG~-----ga~rlL~~ld~~~~~--~~pK~~iGySDiTaL~~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 48 EERAADLNAAFADPEIKAIWCARGGY-----GANRLLPYLDYDLIR--ANPKIFVGYSDITALHLALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCcC-----CHHHhhhhCCHHHHh--hCCeEEEEecHHHHHHHHHHHhcCceEEECcc
Confidence 45667777777777777777654321 122334444444433 234445555555444444432 555555554
No 215
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=62.53 E-value=40 Score=21.87 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=45.2
Q ss_pred HHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccCh-HHh-----hc--CCCcceEEecCCh------hhHHH
Q psy10186 8 LLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQ-QDV-----LA--HPNCRLFISHGGV------NSALE 67 (124)
Q Consensus 8 ~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~-~~~-----l~--~~~~d~~i~~gG~------~t~~e 67 (124)
.+++.|++.|++.++...++.. +. ..++++++.-... ... ++ ..+..++++|+|. +.+.+
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 4788999999988887665431 11 1234554443321 111 11 1456677888874 45679
Q ss_pred HHHhCCCeeeec
Q psy10186 68 AIHYGIPIIGVP 79 (124)
Q Consensus 68 a~~~g~P~l~~P 79 (124)
|...+.|+|++.
T Consensus 82 A~~~~~Pvl~i~ 93 (162)
T cd07037 82 AYYSGVPLLVLT 93 (162)
T ss_pred HHhcCCCEEEEE
Confidence 999999999984
No 216
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=62.18 E-value=32 Score=25.21 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCC----------C-CC--cEEEeecc---ChH-------HhhcCCCcceEEecCC
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIEN----------L-PG--NVHIRKWI---PQQ-------DVLAHPNCRLFISHGG 61 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~----------~-~~--~v~~~~~~---~~~-------~~l~~~~~d~~i~~gG 61 (124)
.+..+.+.+.+.+.++++++++..... . .. .+.+.+.+ |.. +.+...++|.+|.=||
T Consensus 13 ~l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 92 (357)
T cd08181 13 CVEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG 92 (357)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 345555666666778888887643110 1 11 23333222 111 1222368899999888
Q ss_pred hhhHHHHHH----------------------hCCCeeeeccc
Q psy10186 62 VNSALEAIH----------------------YGIPIIGVPFY 81 (124)
Q Consensus 62 ~~t~~ea~~----------------------~g~P~l~~P~~ 81 (124)
. +++++.. .++|++.+|..
T Consensus 93 G-SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 93 G-SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred c-hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 6 5666543 26899999985
No 217
>PRK08266 hypothetical protein; Provisional
Probab=62.11 E-value=55 Score=25.36 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCC-------CCCCCCcEEEeeccChH-H-----hhc--CCCcceEEecCCh------hh
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDS-------IENLPGNVHIRKWIPQQ-D-----VLA--HPNCRLFISHGGV------NS 64 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~-------~~~~~~~v~~~~~~~~~-~-----~l~--~~~~d~~i~~gG~------~t 64 (124)
.+.+++.|.+.|++.++.+.++. ..+..++++++.-.... . -++ ..+..++++|.|. +.
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~g 86 (542)
T PRK08266 7 GEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAA 86 (542)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHH
Confidence 56788899999998888876653 11122345554433211 1 111 1345677888774 56
Q ss_pred HHHHHHhCCCeeeec
Q psy10186 65 ALEAIHYGIPIIGVP 79 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P 79 (124)
+.+|...++|+|++.
T Consensus 87 i~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 87 LLTAYGCNSPVLCLT 101 (542)
T ss_pred HHHHHhhCCCEEEEe
Confidence 789999999999983
No 218
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=61.98 E-value=40 Score=26.02 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCC-cEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeec
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPG-NVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVP 79 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P 79 (124)
||++.++.+++.+.+.+-++=+++.........+ .+. +..-+.|.....+..+.| .+--..-|+|+|.+.
T Consensus 299 L~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in----~t~~~aL~~~~~r~~~a~-----ai~~~lpGiP~iYy~ 369 (470)
T TIGR03852 299 LTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQIN----CTYYSALGDDDQAYLLAR-----AIQFFAPGIPQVYYV 369 (470)
T ss_pred CCHHHHHHHHHHHHhcCCCccccccccccCCcCceeee----hhhHHHhCCCHHHHHHHH-----HHHHcCCCCceEEec
Confidence 5778888888888877766656444332211111 111 111111210000001111 122234688888874
Q ss_pred ccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHH
Q psy10186 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSI 116 (124)
Q Consensus 80 ~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ 116 (124)
-----..+.+.+++.|.+.-++...++.++|...+++
T Consensus 370 ~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~ 406 (470)
T TIGR03852 370 GLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKR 406 (470)
T ss_pred hhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhh
Confidence 3222234566677778888898888888888776654
No 219
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=61.93 E-value=63 Score=24.33 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=46.3
Q ss_pred CCcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCce-eEecCCCCCHHHHHHHHHHHhc
Q psy10186 51 PNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAG-VELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g-~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
..||++|.- =..++.-|+..|+|.+.+ +=+......+++.|+- .......++.+.+.+.+.+.+.
T Consensus 284 ~~~dl~Vg~-R~HsaI~al~~g~p~i~i---~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 284 AACDLIVGM-RLHSAIMALAFGVPAIAI---AYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLT 349 (385)
T ss_pred ccCceEEee-hhHHHHHHHhcCCCeEEE---eecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHh
Confidence 778887753 345788899999999998 3455556777777765 3444567778888777777654
No 220
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=60.41 E-value=13 Score=26.61 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCcceEEecCChhhHHHHHHhCCCeeee
Q psy10186 51 PNCRLFISHGGVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~g~P~l~~ 78 (124)
.+.|++|+.++..+..-|-..|+|.+.+
T Consensus 92 ~~pDlVi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 92 YNPDLIISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred cCCCEEEECCchHHHHHHHhcCCCEEEE
Confidence 5679999999999999999999999976
No 221
>PRK13057 putative lipid kinase; Reviewed
Probab=60.35 E-value=12 Score=26.42 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=24.6
Q ss_pred CCcceEEecCChhhHHHHH----HhCCCeeeecc
Q psy10186 51 PNCRLFISHGGVNSALEAI----HYGIPIIGVPF 80 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~----~~g~P~l~~P~ 80 (124)
...|.+|.-||-||+.|.+ ..+.|+-++|.
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 5679999999999988875 34678888897
No 222
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=59.25 E-value=37 Score=26.75 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCCC------CCCCcEEEeeccChHH--h--hcCC----CcceEEecCCh------
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDSIE------NLPGNVHIRKWIPQQD--V--LAHP----NCRLFISHGGV------ 62 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~~~------~~~~~v~~~~~~~~~~--~--l~~~----~~d~~i~~gG~------ 62 (124)
......+++.|.+.|++-++++.++... ...++++++-.++... . +... +=-++||.+|.
T Consensus 8 t~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhcc
Confidence 4567788999999999888888775411 1233777766665322 1 1112 22347888883
Q ss_pred hhHHHHHHhCCCeeeec
Q psy10186 63 NSALEAIHYGIPIIGVP 79 (124)
Q Consensus 63 ~t~~ea~~~g~P~l~~P 79 (124)
-.++||-..++|.|++.
T Consensus 88 PAViEA~~srvpLIVLT 104 (566)
T COG1165 88 PAVIEANLSRVPLIVLT 104 (566)
T ss_pred HHHHhhhhcCCceEEEe
Confidence 57899999999999984
No 223
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=58.31 E-value=86 Score=24.34 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=62.8
Q ss_pred HHHHHHHhhCCCeEEEEEcCCC--------CCCCCCcEEEeec--------cChHHhhcCCCcceE-EecCChhhHH---
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDS--------IENLPGNVHIRKW--------IPQQDVLAHPNCRLF-ISHGGVNSAL--- 66 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~--------~~~~~~~v~~~~~--------~~~~~~l~~~~~d~~-i~~gG~~t~~--- 66 (124)
..+++.|.+.|..+-++.-++- ......+-.+.++ +.+.++. ..+|++ |..+.++|+.
T Consensus 87 ~~lvr~L~k~G~~V~VvmT~sA~~fv~p~~~~~ls~~~V~~d~~~~~~~~~~~Hi~la--~~aD~~vVAPATANTIAKiA 164 (475)
T PRK13982 87 LDLIRRLKERGAHVRCVLTKAAQQFVTPLTASALSGQRVYTDLFDPESEFDAGHIRLA--RDCDLIVVAPATADLMAKMA 164 (475)
T ss_pred HHHHHHHHhCcCEEEEEECcCHHHHhhHHHHHHhcCCceEecCCCcccccCccchhhh--hhcCEEEEeeCCHHHHHHHH
Confidence 4566777777776655554421 1112222122222 2233333 678885 6666555443
Q ss_pred ----------HHHHhCCCeeeecccccH-------HHHHHHHHHcCceeEecCCC--------------CCHHHHHHHHH
Q psy10186 67 ----------EAIHYGIPIIGVPFYGDQ-------LSHVRHIVDLGAGVELSYFN--------------ITLESIAWATS 115 (124)
Q Consensus 67 ----------ea~~~g~P~l~~P~~~~q-------~~~a~~~~~~g~g~~~~~~~--------------~~~~~l~~~l~ 115 (124)
-.+..++|++++|..... ..|...+.+.|.-++ .+.. .+.+++...+.
T Consensus 165 ~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi-~P~~g~lA~~g~~G~Grm~e~~~I~~~v~ 243 (475)
T PRK13982 165 NGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMI-GPNAGEMAERGEAGVGRMAEPLEIAAAAE 243 (475)
T ss_pred ccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEE-CCCCCccccCCCcCCCCCCCHHHHHHHHH
Confidence 235668999999986432 467888888876554 3321 14667888887
Q ss_pred HHhc
Q psy10186 116 IVLN 119 (124)
Q Consensus 116 ~ll~ 119 (124)
+++.
T Consensus 244 ~~~~ 247 (475)
T PRK13982 244 ALLR 247 (475)
T ss_pred HHHh
Confidence 7764
No 224
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=58.29 E-value=14 Score=27.26 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=25.6
Q ss_pred CCcceEEecCChhhHHHHHHh---CCCeeeecc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY---GIPIIGVPF 80 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~---g~P~l~~P~ 80 (124)
..+|+++.-||-||.-..+.. .+|+|.+|.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~~~vPvLGipa 131 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVGADVPVLGIPA 131 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhccCCCceEeecc
Confidence 579999999999887665555 999999998
No 225
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=57.97 E-value=16 Score=25.78 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHh-----CCCeee-
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY-----GIPIIG- 77 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~-----g~P~l~- 77 (124)
+...++.+.+.+.+..+.+........ .. ..+. .... ...|.+|.-||-||+.|++.. ..|.+.
T Consensus 19 ~~~~~i~~~l~~~~~~~~~~~t~~~~~--~~-----~~~~--~~~~-~~~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgi 88 (293)
T TIGR00147 19 KPLREVIMLLREEGMEIHVRVTWEKGD--AA-----RYVE--EARK-FGVDTVIAGGGDGTINEVVNALIQLDDIPALGI 88 (293)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCccc--HH-----HHHH--HHHh-cCCCEEEEECCCChHHHHHHHHhcCCCCCcEEE
Confidence 345667777777777655433221100 00 1111 1122 468999999999999996542 345555
Q ss_pred ecc
Q psy10186 78 VPF 80 (124)
Q Consensus 78 ~P~ 80 (124)
+|.
T Consensus 89 iP~ 91 (293)
T TIGR00147 89 LPL 91 (293)
T ss_pred EcC
Confidence 786
No 226
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=57.94 E-value=63 Score=22.70 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCC--CCCCCCcEEEeeccCh-HHhhcC----CCcceEEecCChhhHHHHHHhCCCee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDS--IENLPGNVHIRKWIPQ-QDVLAH----PNCRLFISHGGVNSALEAIHYGIPII 76 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~--~~~~~~~v~~~~~~~~-~~~l~~----~~~d~~i~~gG~~t~~ea~~~g~P~l 76 (124)
+..+++++.+++.+.+-++..++-. ..+..++++++.-... .+.+.. .--...|+--++.-+.|+...|.|.+
T Consensus 94 e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e~~~v~~va~~~~~~~~l~~~~~~~~~~G~I~G~~g~ll~e~~~r~i~a~ 173 (244)
T COG1938 94 EISNAVVEWAEENGVEEVISLGGMPARLREEKPSVYGVATSEEKLEKLKDLGAEPLEEGTIVGPSGALLNECLKRGIPAL 173 (244)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcccccCCCceEEEecchhhhhHHhhcCCCccccceeecccHHHHHHHHHcCCCeE
Confidence 5566777777889998888777432 3334456776664443 222211 11122666667778999999999999
Q ss_pred ee-cc-cc---cHHHHHHHHHHc--CceeEecCCCC--CHHHHHHHHHHHh
Q psy10186 77 GV-PF-YG---DQLSHVRHIVDL--GAGVELSYFNI--TLESIAWATSIVL 118 (124)
Q Consensus 77 ~~-P~-~~---~q~~~a~~~~~~--g~g~~~~~~~~--~~~~l~~~l~~ll 118 (124)
++ +. +. |=..-+..++-. =+|..++.+.+ .++++++.++++.
T Consensus 174 ~ll~et~~~~PDP~AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~ 224 (244)
T COG1938 174 VLLAETFGDRPDPRAAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLA 224 (244)
T ss_pred EEeccccCCCCChHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHH
Confidence 85 33 33 333333333322 24444432222 2445555555554
No 227
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=57.80 E-value=14 Score=22.68 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.4
Q ss_pred CCcceEEecCChhhHHHHHHh----C-----CCeeeecccc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY----G-----IPIIGVPFYG 82 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~----g-----~P~l~~P~~~ 82 (124)
...|.+|.-||-||+.|.+-. . .|+.++|...
T Consensus 48 ~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 48 PKFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred CcCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 346789999999999887532 2 5777788753
No 228
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=57.70 E-value=13 Score=29.13 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.3
Q ss_pred CCcceEEecCChhhHHHHHHhCCCeeeeccc-cc
Q psy10186 51 PNCRLFISHGGVNSALEAIHYGIPIIGVPFY-GD 83 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~-~~ 83 (124)
..+|++|+.||....+.. ...+|+|-++.. +|
T Consensus 63 ~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~~D 95 (538)
T PRK15424 63 ERCDAIIAAGSNGAYLKS-RLSVPVILIKPSGFD 95 (538)
T ss_pred CCCcEEEECchHHHHHHh-hCCCCEEEecCCHhH
Confidence 689999999999999987 568999999875 35
No 229
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=57.12 E-value=72 Score=23.52 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=53.9
Q ss_pred HHHHHHhhCC--CeEEEEEcCCCCC--CCCCcEEEeeccChHHhhcCCCcceEEec------CChhhHHHHHHhCCCeee
Q psy10186 8 LLVTAFSRTG--LTVLWRYEGDSIE--NLPGNVHIRKWIPQQDVLAHPNCRLFISH------GGVNSALEAIHYGIPIIG 77 (124)
Q Consensus 8 ~~~~~l~~~~--~~~i~~~g~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~------gG~~t~~ea~~~g~P~l~ 77 (124)
..++++.+.+ .+++.++..+... +.....-+..|.+..+++....++++... -+.-...+++..||.+++
T Consensus 16 ~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~ 95 (343)
T TIGR01761 16 FYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQ 95 (343)
T ss_pred HHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEE
Confidence 4566776654 6888888775421 11111111246677887744445555431 234667789999999999
Q ss_pred e-cccccH-HHHHHHHHHcCceeEec
Q psy10186 78 V-PFYGDQ-LSHVRHIVDLGAGVELS 101 (124)
Q Consensus 78 ~-P~~~~q-~~~a~~~~~~g~g~~~~ 101 (124)
= |...++ ....+..++.|.-..+.
T Consensus 96 EKPla~~Ea~el~~~A~~~g~~l~v~ 121 (343)
T TIGR01761 96 EHPLHPRDIQDLLRLAERQGRRYLVN 121 (343)
T ss_pred cCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5 776433 23334445556665554
No 230
>PRK13059 putative lipid kinase; Reviewed
Probab=57.11 E-value=14 Score=26.26 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHH---H---hCCCeeee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAI---H---YGIPIIGV 78 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~---~---~g~P~l~~ 78 (124)
.++++.+.+.+.+.++....-... ... ... .+... ...|.+|.-||-||+.|.+ . .+.|+-++
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~-----~~~---~~~--~~~~~-~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgvi 88 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLE-----YDL---KNA--FKDID-ESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGIL 88 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCc-----chH---HHH--HHHhh-cCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEE
Confidence 445666677777766544322110 000 001 11122 5679999999999988774 2 24788888
Q ss_pred ccc
Q psy10186 79 PFY 81 (124)
Q Consensus 79 P~~ 81 (124)
|.-
T Consensus 89 P~G 91 (295)
T PRK13059 89 PVG 91 (295)
T ss_pred CCC
Confidence 973
No 231
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=56.99 E-value=68 Score=25.20 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=46.4
Q ss_pred HHHHHHHhhCCCeEEEEEcCCC-------CCCCCCcEEEeeccChH------Hhhc--CCCcceEEecCCh------hhH
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDS-------IENLPGNVHIRKWIPQQ------DVLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~-------~~~~~~~v~~~~~~~~~------~~l~--~~~~d~~i~~gG~------~t~ 65 (124)
+.+++.|.+.|++.++.+.++. ..+.+++++++.-.... +-++ ..+..++++|.|- +.+
T Consensus 3 ~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i 82 (575)
T TIGR02720 3 AAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL 82 (575)
T ss_pred HHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH
Confidence 4678899999998888776653 11122335544432210 1111 1456778888874 567
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|...+.|+|++.
T Consensus 83 ~~A~~~~~Pvl~I~ 96 (575)
T TIGR02720 83 YDAKEDHVPVLALV 96 (575)
T ss_pred HHHhhcCCCEEEEe
Confidence 79999999999984
No 232
>PRK11914 diacylglycerol kinase; Reviewed
Probab=56.50 E-value=14 Score=26.26 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCcceEEecCChhhHHHHH----HhCCCeeeecc
Q psy10186 51 PNCRLFISHGGVNSALEAI----HYGIPIIGVPF 80 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~----~~g~P~l~~P~ 80 (124)
..+|.+|.-||-||+.|++ ..++|+-++|.
T Consensus 63 ~~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 63 KGTDALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred cCCCEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 5679999999999998886 34688888897
No 233
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=56.40 E-value=84 Score=23.67 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=43.8
Q ss_pred CCcceE-EecCChhhHH-------------HHHHhCCCeeeecccc----c---HHHHHHHHHHcCceeEecCC------
Q psy10186 51 PNCRLF-ISHGGVNSAL-------------EAIHYGIPIIGVPFYG----D---QLSHVRHIVDLGAGVELSYF------ 103 (124)
Q Consensus 51 ~~~d~~-i~~gG~~t~~-------------ea~~~g~P~l~~P~~~----~---q~~~a~~~~~~g~g~~~~~~------ 103 (124)
..+|++ |..+.++|+. -++..++|++++|... + -..|...+.+.|.-++ .+.
T Consensus 81 ~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii-~P~~g~la~ 159 (399)
T PRK05579 81 KWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEII-GPASGRLAC 159 (399)
T ss_pred cccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEE-CCCCccccC
Confidence 578884 6666665543 2355689999999532 2 4567777887776544 331
Q ss_pred -------CCCHHHHHHHHHHHhc
Q psy10186 104 -------NITLESIAWATSIVLN 119 (124)
Q Consensus 104 -------~~~~~~l~~~l~~ll~ 119 (124)
=.+.+++...+.+.+.
T Consensus 160 ~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 160 GDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred CCcCCCCCCCHHHHHHHHHHHhh
Confidence 1257788777777664
No 234
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=56.36 E-value=57 Score=21.67 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHH-HhCCCeeee
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAI-HYGIPIIGV 78 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~-~~g~P~l~~ 78 (124)
+.+..+.|.+.|++.|..-+.-.+.+.....|+=-+-...++..-++ .+|+++-.-=-|-=.||+ .+||-+|.+
T Consensus 42 T~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~~v~~~GIy---~ADVVLVPLEDGDR~EAL~~mGK~VIaI 116 (178)
T PF02006_consen 42 TEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERAKVSKEGIY---SADVVLVPLEDGDRTEALVKMGKTVIAI 116 (178)
T ss_pred CHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccceECcccce---eccEEEeccCCCcHHHHHHHcCCeEEEE
Confidence 46788899999999998766666555422333322233444555444 588887776666667775 589999987
No 235
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=56.28 E-value=4.3 Score=30.23 Aligned_cols=70 Identities=24% Similarity=0.211 Sum_probs=48.0
Q ss_pred CCcceEEecCChhhHHHHHHhCCCeeeeccc-ccHHHHHHHHHHcC--------ceeEec----CCCCCHHHHHHHHHHH
Q psy10186 51 PNCRLFISHGGVNSALEAIHYGIPIIGVPFY-GDQLSHVRHIVDLG--------AGVELS----YFNITLESIAWATSIV 117 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~-~~q~~~a~~~~~~g--------~g~~~~----~~~~~~~~l~~~l~~l 117 (124)
..||+.+..+|. .++|++.+|+|+++.=.. .=-...++++.... +|..+- .++++++.+.+++..+
T Consensus 263 ~~aD~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~l 341 (381)
T COG0763 263 AAADAALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEEL 341 (381)
T ss_pred HHhhHHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHH
Confidence 679999988887 589999999999996222 12233455444332 121111 2567899999999999
Q ss_pred hcCC
Q psy10186 118 LNNP 121 (124)
Q Consensus 118 l~~~ 121 (124)
+.|+
T Consensus 342 l~~~ 345 (381)
T COG0763 342 LLNG 345 (381)
T ss_pred hcCh
Confidence 9876
No 236
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=56.07 E-value=84 Score=23.57 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=56.3
Q ss_pred EEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHH----HHHcCceeEecCCCCCHHHHH
Q psy10186 36 VHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRH----IVDLGAGVELSYFNITLESIA 111 (124)
Q Consensus 36 v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~----~~~~g~g~~~~~~~~~~~~l~ 111 (124)
..+.++.+-.+++ +.+|++||-=.. ...|.+...+|++..-...+|....+- .+...-|-++. +.+++.
T Consensus 272 ~~vs~~~di~dll--~~sDiLITDySS-v~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~----~~~~li 344 (388)
T COG1887 272 LDVSDNADINDLL--LVSDILITDYSS-VIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE----TQEELI 344 (388)
T ss_pred EecccchhHHHHH--hhhCEEEeechH-HHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc----cHHHHH
Confidence 3445556777888 789999998877 689999999999998666565522211 13334555555 788888
Q ss_pred HHHHHHhcCCC
Q psy10186 112 WATSIVLNNPR 122 (124)
Q Consensus 112 ~~l~~ll~~~~ 122 (124)
++|.....+++
T Consensus 345 ~ai~~~~~~~~ 355 (388)
T COG1887 345 DAIKPYDEDGN 355 (388)
T ss_pred HHHHhhhcccc
Confidence 88888776543
No 237
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=55.96 E-value=19 Score=30.19 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=47.1
Q ss_pred eccChHHhhcC-CCcceEEecC---Chh-hHHHHHHhCC---CeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHH
Q psy10186 40 KWIPQQDVLAH-PNCRLFISHG---GVN-SALEAIHYGI---PIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIA 111 (124)
Q Consensus 40 ~~~~~~~~l~~-~~~d~~i~~g---G~~-t~~ea~~~g~---P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~ 111 (124)
..++..+++++ ..+|+++..+ |.| +..|+++++. .+++++ |--..+..+ ..-++.+++ ++.++++
T Consensus 446 ~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS---EfaGaa~~L--~~~AllVNP--~D~~~vA 518 (934)
T PLN03064 446 RSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS---EFAGAAQSL--GAGAILVNP--WNITEVA 518 (934)
T ss_pred cCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe---CCCchHHHh--CCceEEECC--CCHHHHH
Confidence 34677765554 8999998887 755 4559999965 233332 333344443 124677765 4688889
Q ss_pred HHHHHHhc
Q psy10186 112 WATSIVLN 119 (124)
Q Consensus 112 ~~l~~ll~ 119 (124)
++|.+.++
T Consensus 519 ~AI~~AL~ 526 (934)
T PLN03064 519 ASIAQALN 526 (934)
T ss_pred HHHHHHHh
Confidence 88888775
No 238
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=55.69 E-value=44 Score=24.06 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=20.6
Q ss_pred EEeeccChHHhhcCCCcceEEecCChhhHHHHHH--hCCCeeeecc
Q psy10186 37 HIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIH--YGIPIIGVPF 80 (124)
Q Consensus 37 ~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~--~g~P~l~~P~ 80 (124)
++.++++...+- ..-+.||-.+-..+++-++. +|++.+.-|.
T Consensus 81 rlL~~lD~~~i~--~~PK~fiGySDiTaL~~al~~~~g~~t~hGp~ 124 (308)
T cd07062 81 ELLPYLDYELIK--KNPKIFIGYSDITALHLAIYKKTGLVTYYGPN 124 (308)
T ss_pred hhhhhcCHHHHh--hCCCEEEeccHHHHHHHHHHHhcCCeEEECcc
Confidence 444444444433 23345555555555555542 2555555554
No 239
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=54.75 E-value=9.2 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=18.6
Q ss_pred cceEEecCChhhHHHHHHhCCCe
Q psy10186 53 CRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.-++|+|||...++-+...|.|.
T Consensus 176 ~vlvVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 176 NVIIAAHGNSLRALTKYIENISD 198 (228)
T ss_pred eEEEEcChHHHHHHHHHHhCCCH
Confidence 34689999998888888888763
No 240
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=54.44 E-value=32 Score=22.82 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=35.5
Q ss_pred CCcce-EEecCChhhHH----------------HHHHhCCCeeeecccc----cHHHHHHHHHHcCceeEec
Q psy10186 51 PNCRL-FISHGGVNSAL----------------EAIHYGIPIIGVPFYG----DQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 51 ~~~d~-~i~~gG~~t~~----------------ea~~~g~P~l~~P~~~----~q~~~a~~~~~~g~g~~~~ 101 (124)
..+|+ +|..+.++|+. .++..++|++++|... -+..|...+.+.|.-++-.
T Consensus 74 ~~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P 145 (181)
T TIGR00421 74 FPFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPP 145 (181)
T ss_pred chhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECC
Confidence 45777 46666655443 3678999999999742 3577888898888776443
No 241
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=54.29 E-value=62 Score=21.53 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhc----C-CCcceEEecCC
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLA----H-PNCRLFISHGG 61 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~----~-~~~d~~i~~gG 61 (124)
.=.++++.+...|..++.+.|+.... .|.++.+.......+.+. . +.+|++|+-+-
T Consensus 31 ~G~~lA~~~~~~Ga~V~li~g~~~~~-~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAA 91 (185)
T PF04127_consen 31 MGAALAEEAARRGAEVTLIHGPSSLP-PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAA 91 (185)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-TTS-----TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB
T ss_pred HHHHHHHHHHHCCCEEEEEecCcccc-ccccceEEEecchhhhhhhhccccCcceeEEEecc
Confidence 34578889999999999999986433 366787777665433211 1 66788887763
No 242
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=53.39 E-value=44 Score=22.89 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=28.7
Q ss_pred hhhHHHHHHhCCCeeeeccccc--HHHHHHHHHHcCceeEecCCCCCHHHHHH
Q psy10186 62 VNSALEAIHYGIPIIGVPFYGD--QLSHVRHIVDLGAGVELSYFNITLESIAW 112 (124)
Q Consensus 62 ~~t~~ea~~~g~P~l~~P~~~~--q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ 112 (124)
..|.-.|+..|+|+.++|-..+ +..-...+-+.|+..+. +.+++.+
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~-----~~~d~~~ 218 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT-----SAKDILE 218 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC-----CHHHHHH
Confidence 3566678999999999987533 33333444456765444 4555543
No 243
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=53.20 E-value=91 Score=24.39 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=47.4
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccCh-HHh-----h--cCCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQ-QDV-----L--AHPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~-~~~-----l--~~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++...++.. +. ..++++++.-... ... + ...+..++++|.|- +.+
T Consensus 6 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl 85 (563)
T PRK08527 6 SQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL 85 (563)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH
Confidence 467889999999988887765431 11 1234554332221 111 1 11457778888874 567
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-++|+|++.
T Consensus 86 a~A~~~~~Pvl~i~ 99 (563)
T PRK08527 86 ATAYMDSIPLVLIS 99 (563)
T ss_pred HHHhhcCCCEEEEe
Confidence 89999999999983
No 244
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=53.09 E-value=90 Score=24.48 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCcceEEecCChhhHHHHHHhCCCeeeeccc-ccHHHHHHHHHHc--CceeEec
Q psy10186 51 PNCRLFISHGGVNSALEAIHYGIPIIGVPFY-GDQLSHVRHIVDL--GAGVELS 101 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~-~~q~~~a~~~~~~--g~g~~~~ 101 (124)
..+|++|+.||...++.. ...+|+|-++.. +|=...-..+.+. .+|++-.
T Consensus 53 ~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~ 105 (526)
T TIGR02329 53 ERCDVVVAGGSNGAYLKS-RLSLPVIVIKPTGFDVMQALARARRIASSIGVVTH 105 (526)
T ss_pred CCCcEEEECchHHHHHHH-hCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEec
Confidence 579999999999888887 557999999875 4533333333433 3444443
No 245
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=53.08 E-value=15 Score=24.46 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=17.9
Q ss_pred eEEecCChhhHHHHHHhCCCee
Q psy10186 55 LFISHGGVNSALEAIHYGIPII 76 (124)
Q Consensus 55 ~~i~~gG~~t~~ea~~~g~P~l 76 (124)
++|+|||....+=+...|.|.-
T Consensus 148 liVsHg~~ir~ll~~~lg~~~~ 169 (204)
T TIGR03848 148 VACSHGDVIKSVLADALGMHLD 169 (204)
T ss_pred EEEeCChHHHHHHHHHhCCCHH
Confidence 6899999988887888887653
No 246
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=52.99 E-value=70 Score=22.90 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcC-CCcceEEecCC--hhhHHHH
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGG--VNSALEA 68 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG--~~t~~ea 68 (124)
+.+..+.++++++|+.+.+-+|........... ....+-..+++.. ++..+++.|.| ..=..|+
T Consensus 144 ~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~-~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 144 PRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG-HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCCCCCCcccccC-CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 345778999999999999988876432111110 0111112333333 89999999999 5445555
No 247
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=52.46 E-value=52 Score=21.20 Aligned_cols=73 Identities=12% Similarity=0.230 Sum_probs=42.5
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCC----CCCCCcEEEeeccChHH--------hhcCCCcceEEecCChh----hHHHHH-
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSI----ENLPGNVHIRKWIPQQD--------VLAHPNCRLFISHGGVN----SALEAI- 69 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~----~~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~~gG~~----t~~ea~- 69 (124)
+.+++.|.+.|++.++-+.++.. +....+++++--..++. -+.....-++..++|.+ .+.+|.
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~~i~~i~~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l~~a~~ 81 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEKDFRHIPLTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINALASLNK 81 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHhCCcEEecCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHHHHHHH
Confidence 45788899999998888766531 11212244331112111 01113344667777754 455777
Q ss_pred HhCCCeeeec
Q psy10186 70 HYGIPIIGVP 79 (124)
Q Consensus 70 ~~g~P~l~~P 79 (124)
..+.|++++-
T Consensus 82 ~~~~Pvl~i~ 91 (157)
T TIGR03845 82 TYGIPLPILA 91 (157)
T ss_pred cCCCCEEEEE
Confidence 8999999985
No 248
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=52.30 E-value=38 Score=19.93 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccC
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIP 43 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~ 43 (124)
+|...++..+++|.+.++.+..+-.+ .....+.+.+.+|=+
T Consensus 33 mPrRT~Qd~i~aL~~~~I~~~Fvq~G--~R~~~GyY~i~~WG~ 73 (90)
T PF09904_consen 33 MPRRTIQDTIKALPELGIECEFVQDG--ERNNAGYYRISDWGP 73 (90)
T ss_dssp --HHHHHHHHHGGGGGT-EEEEE--T--TS-S--EEEEEE-TT
T ss_pred CCHhHHHHHHHHhhcCCeEEEEEecC--ccCCCCcEEeeecCC
Confidence 57888999999999999887765422 223356788888844
No 249
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=52.21 E-value=2.1 Score=18.74 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=12.9
Q ss_pred ChhhHHHHHHhCCCeee
Q psy10186 61 GVNSALEAIHYGIPIIG 77 (124)
Q Consensus 61 G~~t~~ea~~~g~P~l~ 77 (124)
|.|+++-.++.++|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56788888888888775
No 250
>PRK08611 pyruvate oxidase; Provisional
Probab=51.64 E-value=1.2e+02 Score=23.93 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCC-------CCCCCCcEEEeeccC-hHHhhc-------CCCcceEEecCCh------h
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDS-------IENLPGNVHIRKWIP-QQDVLA-------HPNCRLFISHGGV------N 63 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~-------~~~~~~~v~~~~~~~-~~~~l~-------~~~~d~~i~~gG~------~ 63 (124)
.-+.+++.|.+.|++.++.+.++. ..+....++++.-.. +...++ ..+..++++|.|. +
T Consensus 6 ~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~ 85 (576)
T PRK08611 6 AGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLN 85 (576)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHH
Confidence 457789999999998888776643 111223455544322 111111 1456678888764 5
Q ss_pred hHHHHHHhCCCeeeec
Q psy10186 64 SALEAIHYGIPIIGVP 79 (124)
Q Consensus 64 t~~ea~~~g~P~l~~P 79 (124)
.+.+|...++|+|++.
T Consensus 86 gla~A~~~~~Pvl~It 101 (576)
T PRK08611 86 GLYDAKMDHVPVLALA 101 (576)
T ss_pred HHHHHhhcCCCEEEEe
Confidence 6779999999999983
No 251
>PRK08322 acetolactate synthase; Reviewed
Probab=51.38 E-value=70 Score=24.81 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HHh-----h--cCCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QDV-----L--AHPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~~-----l--~~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++.+.++.. +.. .++++++.-... ... + ...+..++++|.|. +.+.
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~ 83 (547)
T PRK08322 4 ADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVA 83 (547)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHH
Confidence 467889999999998888766531 111 133444333221 111 1 11456678888764 5678
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|...++|+|++.
T Consensus 84 ~A~~~~~Pll~i~ 96 (547)
T PRK08322 84 YAQLGGMPMVAIT 96 (547)
T ss_pred HHhhcCCCEEEEe
Confidence 9999999999984
No 252
>PRK05920 aromatic acid decarboxylase; Validated
Probab=51.37 E-value=30 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=24.7
Q ss_pred HHHHhCCCeeeecccc-c---HHHHHHHHHHcCceeE
Q psy10186 67 EAIHYGIPIIGVPFYG-D---QLSHVRHIVDLGAGVE 99 (124)
Q Consensus 67 ea~~~g~P~l~~P~~~-~---q~~~a~~~~~~g~g~~ 99 (124)
+++..++|++++|... . ...|...+.+.|.-++
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii 161 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIIL 161 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEe
Confidence 4677999999999842 2 3578888888877653
No 253
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=51.03 E-value=13 Score=25.41 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=18.0
Q ss_pred ceEEecCChhhHHHHHHhCCCe
Q psy10186 54 RLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
-++|+|||...++-+...|.|.
T Consensus 177 vlvVsHg~vir~l~~~~~~~~~ 198 (228)
T PRK14119 177 VLVSAHGNSIRALIKYLEDVSD 198 (228)
T ss_pred EEEEeChHHHHHHHHHHhCCCH
Confidence 4689999998888888888773
No 254
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=50.41 E-value=38 Score=22.73 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=24.1
Q ss_pred CCcceEEecCChhhHHHHHHhCCCeeeecc
Q psy10186 51 PNCRLFISHGGVNSALEAIHYGIPIIGVPF 80 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~ 80 (124)
..++++|+.==++ ..-|+.+|+|++.+..
T Consensus 256 ~~~~~~Is~RlH~-~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 256 SQADLVISMRLHG-AILALSLGVPVIAISY 284 (286)
T ss_pred hcCCEEEecCCHH-HHHHHHcCCCEEEEec
Confidence 8899999987664 6668999999999853
No 255
>PRK07064 hypothetical protein; Provisional
Probab=50.21 E-value=1.2e+02 Score=23.58 Aligned_cols=75 Identities=12% Similarity=0.234 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccChH-Hh-----h--cCCCcceEEecCCh------hh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQQ-DV-----L--AHPNCRLFISHGGV------NS 64 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~~-~~-----l--~~~~~d~~i~~gG~------~t 64 (124)
.-+.+++.|.+.|++.++.+.++.. ... .++++++.-.... .. + ...+..++++|.|. +.
T Consensus 5 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~ 84 (544)
T PRK07064 5 VGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGA 84 (544)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHH
Confidence 3467889999999988886655431 111 2345544332211 11 1 11456778888774 56
Q ss_pred HHHHHHhCCCeeeec
Q psy10186 65 ALEAIHYGIPIIGVP 79 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P 79 (124)
+.+|..-++|+|++.
T Consensus 85 i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 85 LVEALTAGTPLLHIT 99 (544)
T ss_pred HHHHHhcCCCEEEEe
Confidence 779999999999983
No 256
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=49.93 E-value=1e+02 Score=24.10 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccCh-HHh-----h--cCCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQ-QDV-----L--AHPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~-~~~-----l--~~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. ... .++++++.-... ... + ...+..++++|.|- +.+
T Consensus 11 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi 90 (557)
T PRK08199 11 GQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV 90 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH
Confidence 567889999999988888766531 111 122444332221 111 1 11456778888874 467
Q ss_pred HHHHHhCCCeeee
Q psy10186 66 LEAIHYGIPIIGV 78 (124)
Q Consensus 66 ~ea~~~g~P~l~~ 78 (124)
.+|...++|+|++
T Consensus 91 ~~A~~~~~Pvl~i 103 (557)
T PRK08199 91 HTAFQDSTPMILF 103 (557)
T ss_pred HHHhhcCCCEEEE
Confidence 7999999999998
No 257
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=49.81 E-value=10 Score=25.01 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=21.5
Q ss_pred cceEEecCChhhHH--HHHHhCCCeeeecc
Q psy10186 53 CRLFISHGGVNSAL--EAIHYGIPIIGVPF 80 (124)
Q Consensus 53 ~d~~i~~gG~~t~~--ea~~~g~P~l~~P~ 80 (124)
=|++|.|+|||-.+ --+.-..|+|...-
T Consensus 67 PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 67 PDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 39999999997544 55777899998644
No 258
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=49.67 E-value=78 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=16.5
Q ss_pred CCcceEEecCChh--hH---------HHHH--HhCCCeeeec
Q psy10186 51 PNCRLFISHGGVN--SA---------LEAI--HYGIPIIGVP 79 (124)
Q Consensus 51 ~~~d~~i~~gG~~--t~---------~ea~--~~g~P~l~~P 79 (124)
..+|.+|..|+.. +. .+.+ ..|+|++.+=
T Consensus 36 ~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~~~g~PvlGIC 77 (192)
T PRK13142 36 DQAETIILPGVGHFKDAMSEIKRLNLNAILAKNTDKKMIGIC 77 (192)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHCCcHHHHHHhCCCeEEEEC
Confidence 4577777777632 11 1111 3588988873
No 259
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=49.62 E-value=1.3e+02 Score=23.80 Aligned_cols=75 Identities=12% Similarity=0.251 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCC-------CCCCCCcEEEeeccChH------Hhhc--CCCcceEEecCCh------h
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDS-------IENLPGNVHIRKWIPQQ------DVLA--HPNCRLFISHGGV------N 63 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~-------~~~~~~~v~~~~~~~~~------~~l~--~~~~d~~i~~gG~------~ 63 (124)
.-+.+++.|.+.|++.++.+.++. ..+.+++++++.--... +-++ ..+..++++|.|. +
T Consensus 5 ~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~ 84 (597)
T PRK08273 5 VADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLN 84 (597)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 356788999999998888776653 11222345544322211 1111 1456777888764 5
Q ss_pred hHHHHHHhCCCeeeec
Q psy10186 64 SALEAIHYGIPIIGVP 79 (124)
Q Consensus 64 t~~ea~~~g~P~l~~P 79 (124)
.+.+|..-++|+|++.
T Consensus 85 gi~~A~~d~vPvl~I~ 100 (597)
T PRK08273 85 GLYDAKLDHVPVVAIV 100 (597)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 6789999999999984
No 260
>PLN02470 acetolactate synthase
Probab=49.38 E-value=1.3e+02 Score=23.72 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccCh-HHh-----h--cCCCcceEEecCCh------hh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQ-QDV-----L--AHPNCRLFISHGGV------NS 64 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~-~~~-----l--~~~~~d~~i~~gG~------~t 64 (124)
.-+.+++.|.+.|++.++.+.++.. +. ..++++++.-... ... + ...+..++++|.|. +.
T Consensus 15 ~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~g 94 (585)
T PLN02470 15 GADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTG 94 (585)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHH
Confidence 3567899999999999998766541 11 1234555433221 111 1 11457778888874 46
Q ss_pred HHHHHHhCCCeeeec
Q psy10186 65 ALEAIHYGIPIIGVP 79 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P 79 (124)
+.+|.+-++|+|++.
T Consensus 95 ia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 95 LADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHhcCCcEEEEe
Confidence 779999999999984
No 261
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=49.30 E-value=1e+02 Score=24.04 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccCh------HHhhc--CCCcceEEecCCh------hh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQ------QDVLA--HPNCRLFISHGGV------NS 64 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~------~~~l~--~~~~d~~i~~gG~------~t 64 (124)
.-+.+++.|.+.|++.++.+.++.. .. ..+.++++.-... .+-++ ..+..++++|.|. +.
T Consensus 11 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~ 90 (568)
T PRK07449 11 WAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPA 90 (568)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHH
Confidence 3467888999999988888766541 11 2234555443221 11111 1345567888774 56
Q ss_pred HHHHHHhCCCeeeec
Q psy10186 65 ALEAIHYGIPIIGVP 79 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P 79 (124)
+.+|...+.|+|++.
T Consensus 91 i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 91 VIEAGLTGVPLIVLT 105 (568)
T ss_pred HHHHhhcCCcEEEEE
Confidence 789999999999984
No 262
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=49.15 E-value=44 Score=22.00 Aligned_cols=103 Identities=15% Similarity=0.242 Sum_probs=51.1
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCC---------CCC----CcEEEeeccChHHhhcCCCcceEEecCChhhHHHHH--H
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIE---------NLP----GNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAI--H 70 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~---------~~~----~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~--~ 70 (124)
...+++.|.+.|+++-+.-..+.+. +.. ..+...++++..+ |..|.-.+=.+.+ .
T Consensus 50 v~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~e----------I~~gsK~~Hf~~i~~~ 119 (169)
T PF12689_consen 50 VPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLE----------IYPGSKTTHFRRIHRK 119 (169)
T ss_dssp HHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEE----------ESSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhh----------eecCchHHHHHHHHHh
Confidence 4567777888887776655443210 111 2223333333333 3333333444443 3
Q ss_pred hCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHh
Q psy10186 71 YGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 71 ~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll 118 (124)
.|+|.=-+=.+.|+..|.+.+.++|+-.+.-++.++.+.+.+.+++.-
T Consensus 120 tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~~~ 167 (169)
T PF12689_consen 120 TGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEKFR 167 (169)
T ss_dssp H---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHHH
T ss_pred cCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 455543333357999999998888988777778999999999988753
No 263
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=49.13 E-value=70 Score=20.56 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccChH-H-----hhcC-CCcceEEecCCh------hhHHHH
Q psy10186 8 LLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQQ-D-----VLAH-PNCRLFISHGGV------NSALEA 68 (124)
Q Consensus 8 ~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~~-~-----~l~~-~~~d~~i~~gG~------~t~~ea 68 (124)
.+++.|.+.|++.++.+.++.. ... .++++++.--... . -+.. .+..++++++|. +.+.+|
T Consensus 2 ~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~A 81 (162)
T cd07038 2 YLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAGA 81 (162)
T ss_pred HHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHHH
Confidence 4788899999988887655431 111 2245554433211 1 1111 245556776653 556789
Q ss_pred HHhCCCeeeec
Q psy10186 69 IHYGIPIIGVP 79 (124)
Q Consensus 69 ~~~g~P~l~~P 79 (124)
...+.|+|++.
T Consensus 82 ~~~~~Pvl~i~ 92 (162)
T cd07038 82 YAEHVPVVHIV 92 (162)
T ss_pred HHcCCCEEEEe
Confidence 99999999984
No 264
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=49.03 E-value=1e+02 Score=22.48 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCcceEEecCChhhHHHH-----HHhCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEA-----IHYGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea-----~~~g~P~l~~P~~ 81 (124)
.++|.+|.=||. ++++. ...++|++.+|..
T Consensus 76 ~~~d~IIavGGG-s~~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 76 QEADVIIGVGGG-KTLDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred cCCCEEEEecCc-HHHHHHHHHHHHcCCCEEEeCCc
Confidence 578998888876 55543 3459999999984
No 265
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=48.94 E-value=30 Score=24.97 Aligned_cols=31 Identities=32% Similarity=0.375 Sum_probs=26.3
Q ss_pred CCcceEEecCChhhHHHHHH----hCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIH----YGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~----~g~P~l~~P~~ 81 (124)
...|.+|.=||.+|+..|.. .++|++.+|..
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkT 124 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGT 124 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccc
Confidence 58999999999988876643 68999999985
No 266
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=48.66 E-value=99 Score=22.91 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhCCCeEEEEEcC
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEG 26 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~ 26 (124)
.+.++.+.+.+.+-++++++++
T Consensus 16 ~~~~l~~~~~~~~~r~livt~~ 37 (382)
T cd08187 16 TESELGKELKKYGKKVLLVYGG 37 (382)
T ss_pred HHHHHHHHHHHhCCEEEEEeCC
Confidence 3455556666666788888876
No 267
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=48.57 E-value=93 Score=21.87 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=29.9
Q ss_pred CCcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCce
Q psy10186 51 PNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAG 97 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g 97 (124)
.++|++|+.==+ ..+-|+.+|+|++.++. +......+++.|..
T Consensus 249 ~~~~~vI~~RlH-~~I~A~~~gvP~i~i~y---~~K~~~~~~~~g~~ 291 (298)
T TIGR03609 249 ASARLVIGMRLH-ALILAAAAGVPFVALSY---DPKVRAFAADAGVP 291 (298)
T ss_pred hhCCEEEEechH-HHHHHHHcCCCEEEeec---cHHHHHHHHHhCCC
Confidence 789998886655 46678899999999843 23455555555543
No 268
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=48.42 E-value=63 Score=21.39 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=13.2
Q ss_pred HHHHHHhCCCeeeeccc
Q psy10186 65 ALEAIHYGIPIIGVPFY 81 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P~~ 81 (124)
+.+++..++|++++|..
T Consensus 108 ~~~~lk~~~pvvi~P~m 124 (174)
T TIGR02699 108 VIQAAKAKVPVYIMPSD 124 (174)
T ss_pred HHHHhccCCCEEEEECc
Confidence 34556679999999984
No 269
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=48.17 E-value=14 Score=25.20 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=17.5
Q ss_pred ceEEecCChhhHHHHHHhCCCe
Q psy10186 54 RLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
-++|+|||...++=+...|.|.
T Consensus 176 vlvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 176 VLVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred EEEEeCHHHHHHHHHHHhCCCH
Confidence 3689999988888777777664
No 270
>PRK13055 putative lipid kinase; Reviewed
Probab=47.95 E-value=29 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=23.5
Q ss_pred CCcceEEecCChhhHHHHHHh------CCCeeeecc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY------GIPIIGVPF 80 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~------g~P~l~~P~ 80 (124)
...|.+|.-||-||+.|++.. ..|+-++|.
T Consensus 58 ~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 58 AGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred cCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 457899999999999988743 356777887
No 271
>PRK13463 phosphatase PhoE; Provisional
Probab=47.86 E-value=15 Score=24.45 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=18.5
Q ss_pred cceEEecCChhhHHHHHHhCCCe
Q psy10186 53 CRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.-++|+|||....+-+...|.|.
T Consensus 145 ~vlvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 145 SILIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred EEEEEeChHHHHHHHHHHhCCCH
Confidence 34789999998888888887765
No 272
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=47.53 E-value=1.4e+02 Score=23.43 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccCh-HHhh-------cCCCcceEEecCCh------hh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQ-QDVL-------AHPNCRLFISHGGV------NS 64 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~-~~~l-------~~~~~d~~i~~gG~------~t 64 (124)
.-+.+++.|.+.|++.++.+.++.. .. ..++++++.-... ...+ ...+..++++|.|. +.
T Consensus 15 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~g 94 (564)
T PRK08155 15 GAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTA 94 (564)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHH
Confidence 3577899999999999888766541 11 1234555442221 1111 11455667877764 46
Q ss_pred HHHHHHhCCCeeeec
Q psy10186 65 ALEAIHYGIPIIGVP 79 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P 79 (124)
+.+|...+.|+|++.
T Consensus 95 l~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 95 IADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHhcCCCEEEEe
Confidence 789999999999984
No 273
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=47.40 E-value=15 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=17.8
Q ss_pred ceEEecCChhhHHHHHHhCCCe
Q psy10186 54 RLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
-++|+|||...++=+...|.|.
T Consensus 177 vlvVsHg~~ir~ll~~~lg~~~ 198 (230)
T PRK14117 177 VFVGAHGNSIRALVKHIKGLSD 198 (230)
T ss_pred EEEEeChHHHHHHHHHHhCcCH
Confidence 4689999998888888888663
No 274
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=47.19 E-value=82 Score=21.31 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh--hh-HHHHHHhCCCeeeec
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV--NS-ALEAIHYGIPIIGVP 79 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~--~t-~~ea~~~g~P~l~~P 79 (124)
+.+..+.+++++.|+++++.....+... .....+.+....+|++|.-+.. .. +.++...|+|++.+-
T Consensus 16 ~~~~g~~~~a~~~g~~~~~~~~~~~~~~---------~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~~ 85 (268)
T cd06270 16 PLLSGVESVARKAGKHLIITAGHHSAEK---------EREAIEFLLERRCDALILHSKALSDDELIELAAQVPPLVLIN 85 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchHH---------HHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhhCCCCEEEEe
Confidence 4555666677888999887654332110 0111111222577777665432 11 445556788888763
No 275
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=46.69 E-value=1.4e+02 Score=23.32 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccChHH------hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQQD------VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~~~------~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. ... .++++++.-..... -++ ..+..++++|.|- +.+
T Consensus 4 ~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i 83 (558)
T TIGR00118 4 AEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI 83 (558)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH
Confidence 467889999999988887766531 111 23455544333111 111 1446678888774 567
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-++|+|++.
T Consensus 84 ~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 84 ATAYMDSIPMVVFT 97 (558)
T ss_pred HHHHhcCCCEEEEe
Confidence 89999999999983
No 276
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=46.44 E-value=54 Score=22.48 Aligned_cols=44 Identities=20% Similarity=0.101 Sum_probs=30.7
Q ss_pred eeeccc----ccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcC
Q psy10186 76 IGVPFY----GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120 (124)
Q Consensus 76 l~~P~~----~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~ 120 (124)
|.+|+. ...+.|...++++|..+++++.. +.+-+...++...++
T Consensus 2 IGIPraL~~y~~~p~W~~FF~~LG~~Vv~S~~T-~k~i~~~G~~~~~~e 49 (221)
T PF09989_consen 2 IGIPRALNYYEYYPFWQTFFTELGFEVVLSPPT-NKEILDKGVKSAPSE 49 (221)
T ss_pred eecchhHhhhhhhHHHHHHHHHcCCEEEECCCC-cHHHHHHHhhhCCCC
Confidence 556763 57889999999999999997433 555555555554443
No 277
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=46.30 E-value=90 Score=21.03 Aligned_cols=58 Identities=17% Similarity=0.034 Sum_probs=36.0
Q ss_pred hHHHHH---HhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 64 SALEAI---HYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 64 t~~ea~---~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
.+.+.+ ....|+|++....+.......+.+.|+.=.+. ++.+.+++.++|+..+....
T Consensus 57 ~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~-K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 57 SCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLS-KASTLEILQQELFLSLNGVR 117 (207)
T ss_pred HHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEe-cCCCHHHHHHHHHHHHCCCc
Confidence 344444 34677888754444444445555667644444 35588999999999886554
No 278
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=45.91 E-value=56 Score=24.19 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhCC-CeEEEEEcCC
Q psy10186 5 MRTLLVTAFSRTG-LTVLWRYEGD 27 (124)
Q Consensus 5 ~~~~~~~~l~~~~-~~~i~~~g~~ 27 (124)
.++.+.+.+.+.+ .++++++++.
T Consensus 16 ~l~~l~~~l~~~g~~r~lvvt~~~ 39 (379)
T TIGR02638 16 AIEDIVDEVKRRGFKKALVVTDKD 39 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcc
Confidence 4566667777777 4888887763
No 279
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=45.79 E-value=1.3e+02 Score=23.50 Aligned_cols=74 Identities=19% Similarity=0.370 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HHhhc-------CCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QDVLA-------HPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~~l~-------~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++.+.++.. ... ..+++++.-... ...++ ..+..++++|.|- +.+.
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~ 83 (548)
T PRK08978 4 AQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLA 83 (548)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH
Confidence 467889999999998888776541 111 124544332221 11111 1456678888874 5678
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|..-+.|+|++.
T Consensus 84 ~A~~~~~Pvl~i~ 96 (548)
T PRK08978 84 DALLDSVPVVAIT 96 (548)
T ss_pred HHhhcCCCEEEEe
Confidence 9999999999984
No 280
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.67 E-value=1.2e+02 Score=23.77 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccChH------Hhhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQQ------DVLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~~------~~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. .. ..++++++.-.... +-++ ..+..++++|.|. +.+
T Consensus 7 a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i 86 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGI 86 (574)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHH
Confidence 567889999999988887766531 11 11245544332211 1111 1456678888774 457
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|...++|+|++.
T Consensus 87 ~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 87 ATAYTDSVPLVILS 100 (574)
T ss_pred HHHhhcCCCEEEEe
Confidence 89999999999983
No 281
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=45.64 E-value=1.2e+02 Score=22.21 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV 62 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~ 62 (124)
.++++.+..+|.+++..-.... .+.. .-.-..|++..+++ .++|+++.|+..
T Consensus 159 ~avA~r~~~Fgm~v~y~~~~~~-~~~~-~~~~~~y~~l~ell--~~sDii~l~~Pl 210 (324)
T COG1052 159 QAVARRLKGFGMKVLYYDRSPN-PEAE-KELGARYVDLDELL--AESDIISLHCPL 210 (324)
T ss_pred HHHHHHHhcCCCEEEEECCCCC-hHHH-hhcCceeccHHHHH--HhCCEEEEeCCC
Confidence 4566666777777765543322 1111 11115566688888 889999888864
No 282
>PRK13337 putative lipid kinase; Reviewed
Probab=45.05 E-value=35 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=23.8
Q ss_pred CCcceEEecCChhhHHHHHHh------CCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY------GIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~------g~P~l~~P~~ 81 (124)
...|.+|.-||-||+.|.+.. ..|+-++|..
T Consensus 56 ~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 56 RKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 567899999999999888752 2466778873
No 283
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=44.98 E-value=17 Score=23.32 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=17.2
Q ss_pred cceEEecCChhhHHHHHHhCCC
Q psy10186 53 CRLFISHGGVNSALEAIHYGIP 74 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P 74 (124)
.-++|+|||....+-+...|.|
T Consensus 139 ~vlvVsHg~~i~~l~~~~~~~~ 160 (177)
T TIGR03162 139 NVLIVTHGGVIRALLAHLLGLP 160 (177)
T ss_pred eEEEEECHHHHHHHHHHHhCCC
Confidence 3458999999888877777766
No 284
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=44.69 E-value=22 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.7
Q ss_pred ceEEecCChhhHHHHHHhCCCe
Q psy10186 54 RLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.++|+|||...++-+...|.|.
T Consensus 235 vLVVsHGgvIR~ll~~lLglp~ 256 (299)
T PTZ00122 235 EIIVCHGNVIRYLVCRALQLPP 256 (299)
T ss_pred EEEEeCChHHHHHHHHHhCcCH
Confidence 4799999998888888888774
No 285
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.43 E-value=1.5e+02 Score=23.21 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=47.8
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccChH-H-----hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQQ-D-----VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~~-~-----~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. .. ..++++++.-.... . -++ ..+..++++|.|- +.+
T Consensus 7 a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl 86 (574)
T PRK06466 7 AEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI 86 (574)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH
Confidence 467889999999988887766531 11 12345554433211 1 111 1456678888764 567
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-+.|+|++.
T Consensus 87 ~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 87 ATAYMDSIPMVVLS 100 (574)
T ss_pred HHHHhcCCCEEEEe
Confidence 89999999999983
No 286
>KOG2764|consensus
Probab=44.13 E-value=96 Score=21.77 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=37.0
Q ss_pred HHHHhhCCCeEEEEEcC-CCCCCCCCcEEEeeccChHHhhcCCCcceEEecCC
Q psy10186 10 VTAFSRTGLTVLWRYEG-DSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGG 61 (124)
Q Consensus 10 ~~~l~~~~~~~i~~~g~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG 61 (124)
++.|++.|..+.++.-. +...+....+++.......+... ..-|++|-.||
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~-~~yDviilPGG 76 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVD-SKYDVIILPGG 76 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhcc-ccccEEEecCC
Confidence 56788889988776533 33455566677777666666666 78899999998
No 287
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=44.03 E-value=1.3e+02 Score=23.76 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HH-----hhc--CCCcceEEecCCh------hhH
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QD-----VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~-----~l~--~~~~d~~i~~gG~------~t~ 65 (124)
.-+.+++.|.+.|++.++.+.++.. ... ..+++++.-... .. -++ ..+..++++|.|. +.+
T Consensus 8 ~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi 87 (588)
T PRK07525 8 PSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV 87 (588)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH
Confidence 3567899999999998888766541 111 123443332221 11 111 1456678888764 456
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|...+.|+|++.
T Consensus 88 ~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 88 ATAYWAHTPVVLVT 101 (588)
T ss_pred HHHhhcCCCEEEEe
Confidence 78999999999985
No 288
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.97 E-value=85 Score=21.35 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=31.2
Q ss_pred cChHHhhcCCCcceEEecCChhh--HHHHHH--hCCCeeeecccccHHHHHHHHHH
Q psy10186 42 IPQQDVLAHPNCRLFISHGGVNS--ALEAIH--YGIPIIGVPFYGDQLSHVRHIVD 93 (124)
Q Consensus 42 ~~~~~~l~~~~~d~~i~~gG~~t--~~ea~~--~g~P~l~~P~~~~q~~~a~~~~~ 93 (124)
.+.+.++. -+-|++|...+... ..+.+. .|.|++.++.......+.+.+..
T Consensus 65 ~n~E~i~~-l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~ 119 (262)
T cd01147 65 PNYEKIAA-LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRL 119 (262)
T ss_pred CCHHHHHh-cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHH
Confidence 34555555 79999998766543 455553 78999998754323334444443
No 289
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=43.93 E-value=18 Score=24.01 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=18.5
Q ss_pred cceEEecCChhhHHHHHHhCCCe
Q psy10186 53 CRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.-++|+|||....+-+...|.|.
T Consensus 143 ~iliVsHg~~i~~l~~~~~~~~~ 165 (199)
T PRK15004 143 NLLIVSHQGVLSLLIARLLGMPA 165 (199)
T ss_pred eEEEEcChHHHHHHHHHHhCCCH
Confidence 34689999998888888888775
No 290
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=43.51 E-value=1.3e+02 Score=22.72 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccC-----hHH-hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIP-----QQD-VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~-----~~~-~l~--~~~~d~~i~~gG~------~t~ 65 (124)
.+.+++.|.+.|++.++.+.++.. +. ..++++++.... ++. -++ ..+..+++++.|. +.+
T Consensus 3 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl 82 (432)
T TIGR00173 3 ASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV 82 (432)
T ss_pred HHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH
Confidence 466889999999988887766531 11 123465554332 111 111 1346678888774 456
Q ss_pred HHHHHhCCCeeee
Q psy10186 66 LEAIHYGIPIIGV 78 (124)
Q Consensus 66 ~ea~~~g~P~l~~ 78 (124)
.+|..-++|+|++
T Consensus 83 ~~A~~~~~Pvl~i 95 (432)
T TIGR00173 83 IEASYSGVPLIVL 95 (432)
T ss_pred HHhcccCCcEEEE
Confidence 7999999999998
No 291
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=43.41 E-value=91 Score=23.39 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=39.3
Q ss_pred EeeccChHHhhcCCCcceEEecCCh------------hhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEec
Q psy10186 38 IRKWIPQQDVLAHPNCRLFISHGGV------------NSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 38 ~~~~~~~~~~l~~~~~d~~i~~gG~------------~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
+.+++...+.+ ..+|++||-=|. +-.--|-.+++|++++-= .-..+...+.+.|+..++.
T Consensus 271 v~~~~~l~~~l--~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G--~v~~~~~~~~~~g~~a~~~ 342 (375)
T TIGR00045 271 VLELLDLEQKI--KDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAG--SLGDGVDVLPQHGIDAAFS 342 (375)
T ss_pred HHHhhCHHHHh--cCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEec--ccCCChHHHHhcCccEEEE
Confidence 45677778888 889999998772 334456778999999732 2122344566667654443
No 292
>PRK13840 sucrose phosphorylase; Provisional
Probab=43.03 E-value=33 Score=26.68 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=34.2
Q ss_pred HHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHH
Q psy10186 69 IHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATS 115 (124)
Q Consensus 69 ~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~ 115 (124)
..-|+|+|...----....-+.+++.|-++.++...++.+++.+.++
T Consensus 369 ~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~ 415 (495)
T PRK13840 369 FAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALE 415 (495)
T ss_pred cCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHH
Confidence 44688999875433344556667778999999988888888777654
No 293
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=42.91 E-value=65 Score=21.70 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~ 78 (124)
..+.+.+++.+.|+++++.....+... .....+.+....+|++|..+......++...|+|++.+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~---------~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~gipvv~~ 81 (265)
T cd06291 17 LARAVEKELYKKGYKLILCNSDNDPEK---------EREYLEMLRQNQVDGIIAGTHNLGIEEYENIDLPIVSF 81 (265)
T ss_pred HHHHHHHHHHHCCCeEEEecCCccHHH---------HHHHHHHHHHcCCCEEEEecCCcCHHHHhcCCCCEEEE
Confidence 344555666777888876543321110 00111111114577766655433344556668887776
No 294
>PRK03482 phosphoglycerate mutase; Provisional
Probab=42.84 E-value=21 Score=23.91 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=18.0
Q ss_pred ceEEecCChhhHHHHHHhCCCe
Q psy10186 54 RLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
-++|+|||...++-+...|.|.
T Consensus 145 vliVsHg~~i~~l~~~l~~~~~ 166 (215)
T PRK03482 145 PLLVSHGIALGCLVSTILGLPA 166 (215)
T ss_pred EEEEeCcHHHHHHHHHHhCCCh
Confidence 4699999988888888888764
No 295
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=42.82 E-value=46 Score=19.48 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccCh-HHhhcCCCcceEEecCCh----hhHHH---HHHhCCC
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQ-QDVLAHPNCRLFISHGGV----NSALE---AIHYGIP 74 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~gG~----~t~~e---a~~~g~P 74 (124)
.+.|.+.++.|++.|+.++ .+... ..++......|+.. ..+| ..||.++.-+|| |.-+| |...|+|
T Consensus 15 ~~~f~~~a~~L~~~G~~vv---nPa~~-~~~~~~~~~~ym~~~l~~L--~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~ 88 (92)
T PF14359_consen 15 RPAFNAAAKRLRAKGYEVV---NPAEL-GIPEGLSWEEYMRICLAML--SDCDAIYMLPGWENSRGARLEHELAKKLGLP 88 (92)
T ss_pred HHHHHHHHHHHHHCCCEEe---Cchhh-CCCCCCCHHHHHHHHHHHH--HhCCEEEEcCCcccCcchHHHHHHHHHCCCe
Confidence 4678888889999886554 21111 22444445555543 3345 689999888886 44444 4555666
Q ss_pred ee
Q psy10186 75 II 76 (124)
Q Consensus 75 ~l 76 (124)
++
T Consensus 89 V~ 90 (92)
T PF14359_consen 89 VI 90 (92)
T ss_pred Ee
Confidence 54
No 296
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=42.73 E-value=1.3e+02 Score=23.69 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccChHH--hh-------cCCCcceEEecCChh------hH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQQD--VL-------AHPNCRLFISHGGVN------SA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~~~--~l-------~~~~~d~~i~~gG~~------t~ 65 (124)
-+.+++.|.+.|++.++...++.. ... ..+++++.- .++. .+ ...+..++++|.|-| .+
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl 97 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGL 97 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH
Confidence 567889999999988887766531 111 124554432 2211 11 114567788888754 47
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-+.|+|++.
T Consensus 98 ~~A~~~~~Pvl~It 111 (571)
T PRK07710 98 ADAMIDSLPLVVFT 111 (571)
T ss_pred HHHhhcCCCEEEEe
Confidence 79999999999984
No 297
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=42.45 E-value=49 Score=18.55 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=24.5
Q ss_pred EEEeeccChHHhh-cCCCcceEEecCCh---hhHHHHHHhCCCeeee
Q psy10186 36 VHIRKWIPQQDVL-AHPNCRLFISHGGV---NSALEAIHYGIPIIGV 78 (124)
Q Consensus 36 v~~~~~~~~~~~l-~~~~~d~~i~~gG~---~t~~ea~~~g~P~l~~ 78 (124)
+.+.+.+...++. ...++..+|+-.|. .+.+-|-.+|+|.++-
T Consensus 13 IlV~~~~~p~~~~~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 13 ILVAEELTPSDLALDLQRVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp EEEESS--TTCHHSHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred EEEECCCCHHHHhcchhheEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 5555544322222 22667777666653 4566778899999995
No 298
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.29 E-value=1.2e+02 Score=21.38 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeecc--ChHHhhcC-CCcce-EEecCChhhHHHHHHhCCCeee
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWI--PQQDVLAH-PNCRL-FISHGGVNSALEAIHYGIPIIG 77 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~--~~~~~l~~-~~~d~-~i~~gG~~t~~ea~~~g~P~l~ 77 (124)
+.+.+.++++.+.+.|.+++-..-.++ ...|. .+.+.= -...+..+ ...++ +++-.-.-.-.+.+.-.++++-
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kp-Rts~~--sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vdilq 103 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKP-RTSAA--SFQGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQ 103 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCC-CCCCc--ccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCCEEE
Confidence 467788899999999987765433231 11111 111100 01111110 11122 2222222222333333466666
Q ss_pred ecccc-cHHHHHHHHHHcCceeEecCC-CCCHHHHHHHHHHHh
Q psy10186 78 VPFYG-DQLSHVRHIVDLGAGVELSYF-NITLESIAWATSIVL 118 (124)
Q Consensus 78 ~P~~~-~q~~~a~~~~~~g~g~~~~~~-~~~~~~l~~~l~~ll 118 (124)
+|-.. .|....+.+.+.|.-+.+... ..+.+++..+++.+.
T Consensus 104 Igs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~ 146 (250)
T PRK13397 104 VGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQ 146 (250)
T ss_pred ECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 66543 344445555555555666544 445666666666654
No 299
>PRK10342 glycerate kinase I; Provisional
Probab=42.26 E-value=1.1e+02 Score=23.08 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=40.3
Q ss_pred EeeccChHHhhcCCCcceEEecCCh------------hhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEec
Q psy10186 38 IRKWIPQQDVLAHPNCRLFISHGGV------------NSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 38 ~~~~~~~~~~l~~~~~d~~i~~gG~------------~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
+.+++...+.+ ..+|++||-=|. +-.--|-.+++|++.+-= .-..+...+.+.|+..++.
T Consensus 272 v~~~~~l~~~l--~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G--~~~~~~~~~~~~g~~av~~ 343 (381)
T PRK10342 272 VTTALNLEEHI--HDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAG--SLTDDVGVVHQHGIDAVFS 343 (381)
T ss_pred HHHhcCHHHHh--ccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEec--ccCCChHHHHhcCceEEEE
Confidence 46677788888 889999998772 444467788999999732 2122235566777765554
No 300
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=42.11 E-value=81 Score=23.60 Aligned_cols=30 Identities=33% Similarity=0.600 Sum_probs=21.6
Q ss_pred CCcceEEecCChhhHHHHHH-----------------------hCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIH-----------------------YGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~-----------------------~g~P~l~~P~~ 81 (124)
.++|.+|.=||. +++++.. ..+|++.+|..
T Consensus 105 ~~~D~IiavGGG-S~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 105 SGCDGVIAFGGG-SVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred cCcCEEEEeCCh-HHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 689999998886 4554431 14699999974
No 301
>PRK03202 6-phosphofructokinase; Provisional
Probab=42.00 E-value=44 Score=24.36 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCcceEEecCChhhHHHHHH---hCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIH---YGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~---~g~P~l~~P~~ 81 (124)
-..|.+|.=||.+|+.-+.. .++|++.+|..
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkT 125 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGT 125 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccc
Confidence 57899999999998877755 49999999985
No 302
>PRK01112 phosphoglyceromutase; Provisional
Probab=41.85 E-value=20 Score=24.55 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=18.6
Q ss_pred CcceEEecCChhhHHHHHHhCCCe
Q psy10186 52 NCRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
..-++|+|||...++-+...+.|.
T Consensus 174 ~~ilVVsHg~vir~l~~~ll~~~~ 197 (228)
T PRK01112 174 KNVFVSAHGNSLRSLIMDLEKLSE 197 (228)
T ss_pred CeEEEEeCHHHHHHHHHHHhCCCH
Confidence 345688999998888888887664
No 303
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=41.69 E-value=1.1e+02 Score=20.73 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecC-Ch--------------hhHHHHHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHG-GV--------------NSALEAIH 70 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~g-G~--------------~t~~ea~~ 70 (124)
+..+.++++..+..+.++.. ..+ + ..+|.+|..| |. ..+.+.+.
T Consensus 14 ~~sl~~al~~~g~~v~vv~~------------------~~~-l--~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~ 72 (210)
T CHL00188 14 LHSVSRAIQQAGQQPCIINS------------------ESE-L--AQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIA 72 (210)
T ss_pred HHHHHHHHHHcCCcEEEEcC------------------HHH-h--hhCCEEEECCCCchHHHHHHHHHCCHHHHHHHHHH
Confidence 45667777777766554421 011 3 4578888766 32 12455666
Q ss_pred hCCCeeeecc
Q psy10186 71 YGIPIIGVPF 80 (124)
Q Consensus 71 ~g~P~l~~P~ 80 (124)
.++|++.+=.
T Consensus 73 ~~~pvlGICl 82 (210)
T CHL00188 73 EGNPFIGICL 82 (210)
T ss_pred cCCCEEEECH
Confidence 7999999843
No 304
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=41.63 E-value=1.3e+02 Score=23.59 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=46.7
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCC----C-CCCcEEEeeccC-hHHhhc-------CCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIE----N-LPGNVHIRKWIP-QQDVLA-------HPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~----~-~~~~v~~~~~~~-~~~~l~-------~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++.+.+.... . ..++++++.-.. +...++ ..+..++++|.|. +.+.
T Consensus 13 ~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~ 92 (569)
T PRK09259 13 FHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALA 92 (569)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHH
Confidence 5678899999999998877664311 0 123444433221 111111 1456678888764 4578
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|..-++|+|++.
T Consensus 93 ~A~~~~~Pvl~I~ 105 (569)
T PRK09259 93 NATTNCFPMIMIS 105 (569)
T ss_pred HHHhcCCCEEEEE
Confidence 9999999999984
No 305
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.25 E-value=1.6e+02 Score=23.06 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=47.4
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccCh-H-----Hhhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQ-Q-----DVLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~-~-----~~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. +.. .++++++.-... . +-++ ..+..++++|.|- +.+
T Consensus 7 a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi 86 (574)
T PRK07979 7 AEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI 86 (574)
T ss_pred HHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH
Confidence 467889999999988887766541 111 134555443221 1 1111 1456778888875 346
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|...+.|+|++.
T Consensus 87 ~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 87 ATAYMDSIPLVVLS 100 (574)
T ss_pred HHHhhcCCCEEEEE
Confidence 79999999999983
No 306
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=41.16 E-value=1e+02 Score=20.29 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=30.4
Q ss_pred CCcce-EEecCChhhH---------------HHHHHhCCCeeeecccc-------cHHHHHHHHHHcCceeE
Q psy10186 51 PNCRL-FISHGGVNSA---------------LEAIHYGIPIIGVPFYG-------DQLSHVRHIVDLGAGVE 99 (124)
Q Consensus 51 ~~~d~-~i~~gG~~t~---------------~ea~~~g~P~l~~P~~~-------~q~~~a~~~~~~g~g~~ 99 (124)
..+|+ +|..+..+|+ ..++..++|++++|... --..|.+.+.+.|.-++
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi 146 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEI 146 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEE
Confidence 56777 4666655443 23333389999999642 13557778888776443
No 307
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=41.11 E-value=1.4e+02 Score=22.07 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=42.8
Q ss_pred CcceEEecCChhhHHHHHHh-----------------CCCeeeecccccHHHHHHHHHHcCceeEe-cCC---CCCHHHH
Q psy10186 52 NCRLFISHGGVNSALEAIHY-----------------GIPIIGVPFYGDQLSHVRHIVDLGAGVEL-SYF---NITLESI 110 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea~~~-----------------g~P~l~~P~~~~q~~~a~~~~~~g~g~~~-~~~---~~~~~~l 110 (124)
.++++++.||..+.+-|+.. ++|.++++-.. ++...+.+.-+|+|+.. ..+ .++.++|
T Consensus 103 ~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 103 DAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp TSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcceeeeEEEEecCCcchhhhHHHh
Confidence 37889999998777666422 35677765433 45556666666888433 222 3678899
Q ss_pred HHHHHHHhcC
Q psy10186 111 AWATSIVLNN 120 (124)
Q Consensus 111 ~~~l~~ll~~ 120 (124)
.++|++...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9998887644
No 308
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=40.75 E-value=1.3e+02 Score=23.69 Aligned_cols=74 Identities=15% Similarity=0.276 Sum_probs=46.1
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccChH-H-----hh--cCCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQQ-D-----VL--AHPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~~-~-----~l--~~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++...++.. +.. ..+++++.-.... . -+ ...+..++++|.|- +.+.
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~ 83 (586)
T PRK06276 4 AEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIA 83 (586)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHH
Confidence 356888999999999888766531 111 2244433322211 1 11 11456677888764 5678
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|...++|+|++.
T Consensus 84 ~A~~~~~Pvl~I~ 96 (586)
T PRK06276 84 TAYADSSPVIALT 96 (586)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999983
No 309
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=40.73 E-value=1.1e+02 Score=20.41 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=46.4
Q ss_pred CCcceE-EecCCh---------hhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeE-ecCCCCCHHHHHHHHHHHhc
Q psy10186 51 PNCRLF-ISHGGV---------NSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVE-LSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 51 ~~~d~~-i~~gG~---------~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~-~~~~~~~~~~l~~~l~~ll~ 119 (124)
..+|++ |.-=|. -.+-|.+.+++|+|..=...+.....+.+...|.-++ +.+. +++.+...+..+|.
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~--NR~~i~~~Il~~L~ 176 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPE--NRNRILNEILSVLK 176 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccc--hhhHHHHHHHHHhc
Confidence 346885 555553 3455778899998886444566778888888887777 5544 45577777777665
Q ss_pred CC
Q psy10186 120 NP 121 (124)
Q Consensus 120 ~~ 121 (124)
..
T Consensus 177 ~~ 178 (179)
T COG1618 177 GE 178 (179)
T ss_pred cC
Confidence 43
No 310
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=40.68 E-value=22 Score=24.48 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=17.3
Q ss_pred ceEEecCChhhHHHHHHhCCC
Q psy10186 54 RLFISHGGVNSALEAIHYGIP 74 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P 74 (124)
-++|+|||...++-+...+.|
T Consensus 164 vliVsHG~vir~ll~~l~~~~ 184 (236)
T PTZ00123 164 VLVAAHGNSLRALVKYLDKMS 184 (236)
T ss_pred EEEEeCHHHHHHHHHHHhCCC
Confidence 469999999888888777766
No 311
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=40.53 E-value=94 Score=23.07 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=21.7
Q ss_pred CCcceEEecCChhhHHHHH-----Hh------------------CCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAI-----HY------------------GIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~-----~~------------------g~P~l~~P~~ 81 (124)
.++|.+|.=||. +++.+. .+ ++|++.+|..
T Consensus 78 ~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 78 AGPDVIIGLGGG-SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 688999988876 455432 11 7899999975
No 312
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=40.40 E-value=1.2e+02 Score=20.88 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=34.6
Q ss_pred CCcceEEe---cCChh-hHHHHHH-hCCCeeeecccc-c---HHHHHHHHHHcCceeEec
Q psy10186 51 PNCRLFIS---HGGVN-SALEAIH-YGIPIIGVPFYG-D---QLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 51 ~~~d~~i~---~gG~~-t~~ea~~-~g~P~l~~P~~~-~---q~~~a~~~~~~g~g~~~~ 101 (124)
+.+|++|+ |+-.. .+.+-+. .|...|++|.+. . .....+.+++.|+-+...
T Consensus 50 ~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P 109 (217)
T PF02593_consen 50 PEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFP 109 (217)
T ss_pred CCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecC
Confidence 88999998 55543 2223333 799999999873 2 345666777777666665
No 313
>PF12496 BNIP2: Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2; InterPro: IPR022181 This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=40.40 E-value=13 Score=23.34 Aligned_cols=7 Identities=71% Similarity=1.160 Sum_probs=6.2
Q ss_pred EEecCCh
Q psy10186 56 FISHGGV 62 (124)
Q Consensus 56 ~i~~gG~ 62 (124)
||+|||+
T Consensus 117 ViSHGGY 123 (127)
T PF12496_consen 117 VISHGGY 123 (127)
T ss_pred eeccCCc
Confidence 7999997
No 314
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=40.28 E-value=1.8e+02 Score=22.91 Aligned_cols=74 Identities=14% Similarity=0.237 Sum_probs=46.7
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HHh-----h--cCCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QDV-----L--AHPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~~-----l--~~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++.+.++.. +.. ..+++++.--.. ... + ...+..++++|.|. +.+.
T Consensus 5 ~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla 84 (579)
T TIGR03457 5 SEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIA 84 (579)
T ss_pred HHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHH
Confidence 467889999999999888766531 111 123443332211 111 1 11456678888774 3577
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|..-+.|+|++.
T Consensus 85 ~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 85 AAYWAHTPVVIVT 97 (579)
T ss_pred HHhhcCCCEEEEe
Confidence 9999999999994
No 315
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=40.24 E-value=47 Score=20.85 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcC
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLWRYEG 26 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~~~g~ 26 (124)
|..+++.++++++.+.|++++..+.-
T Consensus 41 L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 41 LKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 34678999999999999999987644
No 316
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=40.10 E-value=1.8e+02 Score=22.81 Aligned_cols=74 Identities=12% Similarity=0.220 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccChH-H-----hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQQ-D-----VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~~-~-----~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. +. ..++++++.-.... . -++ ..+..++++|.|- +.+
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gl 92 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGI 92 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH
Confidence 567889999999998887766531 11 12345554432211 1 111 1346678888874 457
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|.+-+.|+|++.
T Consensus 93 a~A~~~~~Pvl~i~ 106 (566)
T PRK07282 93 ADAMSDSVPLLVFT 106 (566)
T ss_pred HHHhhcCCCEEEEe
Confidence 79999999999984
No 317
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=39.88 E-value=1.6e+02 Score=22.92 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HHh-----hc--CCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QDV-----LA--HPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~~-----l~--~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++.+.++.. +.. ..+++++..... ... ++ ..+..++++|.|. +.+.
T Consensus 5 a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~ 84 (549)
T PRK06457 5 AEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLY 84 (549)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHH
Confidence 467888999999998888766531 111 123544333221 111 11 1456678888774 5678
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|...+.|+|++.
T Consensus 85 ~A~~~~~Pvl~i~ 97 (549)
T PRK06457 85 DAKMDHAPVIALT 97 (549)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999983
No 318
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=39.71 E-value=1.7e+02 Score=22.87 Aligned_cols=75 Identities=9% Similarity=0.142 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCC-----CCCcEEEeeccCh-HHh-----hc--CCCcceEEecCCh------hhH
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIEN-----LPGNVHIRKWIPQ-QDV-----LA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~-----~~~~v~~~~~~~~-~~~-----l~--~~~~d~~i~~gG~------~t~ 65 (124)
.-+.+++.|++.|++.++.+.+..... ...+++++.-... ... ++ ..+..++++|.|- +.+
T Consensus 5 ~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi 84 (554)
T TIGR03254 5 GFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL 84 (554)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH
Confidence 346788999999999988876653211 1234544332221 111 11 1456677888664 457
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-+.|+|++.
T Consensus 85 a~A~~~~~Pvl~I~ 98 (554)
T TIGR03254 85 ANATTNCFPMIMIS 98 (554)
T ss_pred HHHHhcCCCEEEEE
Confidence 79999999999983
No 319
>PRK11269 glyoxylate carboligase; Provisional
Probab=39.51 E-value=1.8e+02 Score=23.00 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccCh-H-----Hhhc--C-CCcceEEecCC------hhh
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQ-Q-----DVLA--H-PNCRLFISHGG------VNS 64 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~-~-----~~l~--~-~~~d~~i~~gG------~~t 64 (124)
.+.+++.|.+.|++.++.+.++.. +. ..++++++.-... . +-++ . .+..+++++.| .+.
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~g 86 (591)
T PRK11269 7 VDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITG 86 (591)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHH
Confidence 567889999999988887765431 11 1234554443221 1 1111 1 23455677766 467
Q ss_pred HHHHHHhCCCeeeec
Q psy10186 65 ALEAIHYGIPIIGVP 79 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P 79 (124)
+.+|...+.|+|++.
T Consensus 87 l~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 87 LYSASADSIPILCIT 101 (591)
T ss_pred HHHHhhcCCCEEEEe
Confidence 889999999999983
No 320
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=39.22 E-value=94 Score=22.96 Aligned_cols=30 Identities=30% Similarity=0.675 Sum_probs=22.0
Q ss_pred CCcceEEecCChhhHHHHH---H--------------------hCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAI---H--------------------YGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~---~--------------------~g~P~l~~P~~ 81 (124)
..+|.+|.=||. +++.+. . .++|++.+|..
T Consensus 79 ~~~D~IIaiGGG-S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 79 GGCDVIIALGGG-SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 678999988876 566542 1 36899999985
No 321
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.82 E-value=1.8e+02 Score=22.91 Aligned_cols=74 Identities=16% Similarity=0.335 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccCh-HH-----hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQ-QD-----VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~-~~-----~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. +.. .++++++.-... .. -++ ..+..++++|.|- +.+
T Consensus 24 a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl 103 (587)
T PRK06965 24 AEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI 103 (587)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH
Confidence 477889999999998888766541 111 134554432221 11 111 1456678888774 457
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|...+.|+|++.
T Consensus 104 ~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 104 ATAYMDSIPMVVIS 117 (587)
T ss_pred HHHhhcCCCEEEEe
Confidence 79999999999984
No 322
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.65 E-value=1.1e+02 Score=19.73 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=24.8
Q ss_pred ChHHhhcCCCcceEEecCChhh--HHHHH-HhCCCeeeecc
Q psy10186 43 PQQDVLAHPNCRLFISHGGVNS--ALEAI-HYGIPIIGVPF 80 (124)
Q Consensus 43 ~~~~~l~~~~~d~~i~~gG~~t--~~ea~-~~g~P~l~~P~ 80 (124)
+.+.++. .+-|+++..++... ..+.+ ..|+|++.++.
T Consensus 61 n~E~ll~-l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 61 NVELIVA-LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CHHHHhc-cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 3455555 78999888665433 44443 67899999975
No 323
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=38.57 E-value=67 Score=21.25 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=21.1
Q ss_pred CCcceEEecCChhhHH--------------HHHHhCCCeeee
Q psy10186 51 PNCRLFISHGGVNSAL--------------EAIHYGIPIIGV 78 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~--------------ea~~~g~P~l~~ 78 (124)
..+|++|-.||..+.. ++...|+|++.+
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGI 78 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGT 78 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEE
Confidence 5788998888876543 456678898887
No 324
>PRK01295 phosphoglyceromutase; Provisional
Probab=38.52 E-value=24 Score=23.71 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=18.6
Q ss_pred cceEEecCChhhHHHHHHhCCCe
Q psy10186 53 CRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.-++|+|||..-.+-+...+.|.
T Consensus 152 ~vliVtHg~~ir~l~~~~l~~~~ 174 (206)
T PRK01295 152 RVLVAAHGNSLRALVMVLDGLTP 174 (206)
T ss_pred eEEEEcChHHHHHHHHHHhCCCH
Confidence 44699999998888888888775
No 325
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.51 E-value=1.6e+02 Score=23.21 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=46.2
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HHh-----h--cCCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QDV-----L--AHPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~~-----l--~~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++.+.++.. +.. ..+++++.-... ... + ...+..++++|.|. +.+.
T Consensus 18 a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla 97 (570)
T PRK06725 18 AGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLA 97 (570)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH
Confidence 467889999999998887766531 111 124444332221 111 1 11456678888775 3467
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|...+.|+|++.
T Consensus 98 ~A~~~~~Pvl~I~ 110 (570)
T PRK06725 98 DAYMDSIPLVVIT 110 (570)
T ss_pred HHhhcCcCEEEEe
Confidence 9999999999983
No 326
>PRK09932 glycerate kinase II; Provisional
Probab=38.40 E-value=1.5e+02 Score=22.35 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=39.6
Q ss_pred EEeeccChHHhhcCCCcceEEecCCh------------hhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEec
Q psy10186 37 HIRKWIPQQDVLAHPNCRLFISHGGV------------NSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 37 ~~~~~~~~~~~l~~~~~d~~i~~gG~------------~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
.+.+++...+.+ ..+|++||-=|. +-.--|-.+++|++++-=. -..+...+.+.|+-.++.
T Consensus 271 ~v~~~~~l~~~l--~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~--~~~~~~~~~~~g~~~~~~ 343 (381)
T PRK09932 271 IVLNAVNLEQAV--QGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV--LGDGVEVVHQYGIDAVFS 343 (381)
T ss_pred HHHHhcChHHHh--ccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecc--cCCChHHHHhcCceEEEE
Confidence 345667777877 789999998772 3344567789999997322 122334466667665553
No 327
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=38.39 E-value=56 Score=23.88 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.4
Q ss_pred CCcceEEecCChhhHHHHHH---hCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIH---YGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~---~g~P~l~~P~~ 81 (124)
-..|.+|.=||.+|+.-|.. .|+|++.+|..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkT 126 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLADKGLPVVGVPKT 126 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHHhcCCCEEeeccc
Confidence 67899999999988876644 59999999985
No 328
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=38.12 E-value=56 Score=23.79 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.7
Q ss_pred CCCcceEEecCChhhHHHHHH---hCCCeeeeccc
Q psy10186 50 HPNCRLFISHGGVNSALEAIH---YGIPIIGVPFY 81 (124)
Q Consensus 50 ~~~~d~~i~~gG~~t~~ea~~---~g~P~l~~P~~ 81 (124)
....|.+|.=||-+|+.-|.. .|+|++.+|..
T Consensus 90 ~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkT 124 (317)
T cd00763 90 KHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGT 124 (317)
T ss_pred HcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccc
Confidence 368999999999988876644 48999999985
No 329
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=37.91 E-value=1.1e+02 Score=19.47 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=45.4
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEe--eccChH---HhhcCCCcceEEecCC--------hhhHHHHH-Hh
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIR--KWIPQQ---DVLAHPNCRLFISHGG--------VNSALEAI-HY 71 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~--~~~~~~---~~l~~~~~d~~i~~gG--------~~t~~ea~-~~ 71 (124)
=..+++.|.+.+.++...+.+........++.+. ++.+.. ..+ ..+|.+++-.| ...+++++ ..
T Consensus 11 G~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al--~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~ 88 (183)
T PF13460_consen 11 GRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAAL--KGADAVIHAAGPPPKDVDAAKNIIEAAKKA 88 (183)
T ss_dssp HHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHH--TTSSEEEECCHSTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhh--hhcchhhhhhhhhccccccccccccccccc
Confidence 3568888988999888877664421114555543 345543 234 68999999888 45566665 45
Q ss_pred CCCeeee
Q psy10186 72 GIPIIGV 78 (124)
Q Consensus 72 g~P~l~~ 78 (124)
|++-+++
T Consensus 89 ~~~~~v~ 95 (183)
T PF13460_consen 89 GVKRVVY 95 (183)
T ss_dssp TSSEEEE
T ss_pred cccccee
Confidence 7666654
No 330
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=37.75 E-value=1.7e+02 Score=22.72 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HH-----hhc--CCCcceEEecCCh------hhHHH
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QD-----VLA--HPNCRLFISHGGV------NSALE 67 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~-----~l~--~~~~d~~i~~gG~------~t~~e 67 (124)
+.+++.|.+.|++.++.+.++.. +.. .++++++.-... .. -++ ..+..++++|.|- +.+.+
T Consensus 3 ~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~ 82 (539)
T TIGR02418 3 DLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLAT 82 (539)
T ss_pred HHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHH
Confidence 56888999999998888766541 111 133443332221 11 111 1445667888774 46779
Q ss_pred HHHhCCCeeeec
Q psy10186 68 AIHYGIPIIGVP 79 (124)
Q Consensus 68 a~~~g~P~l~~P 79 (124)
|..-+.|+|++.
T Consensus 83 A~~~~~Pvl~I~ 94 (539)
T TIGR02418 83 ANSEGDPVVAIG 94 (539)
T ss_pred HhhcCCCEEEEe
Confidence 999999999983
No 331
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.64 E-value=2e+02 Score=22.53 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=59.5
Q ss_pred HHHHHHHhhCCCeEEEEEcCCC----CCCCCCcEEEeeccChHHhhcC---CCcceEE-ecCCh--h-hHHHHHHhC---
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDS----IENLPGNVHIRKWIPQQDVLAH---PNCRLFI-SHGGV--N-SALEAIHYG--- 72 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~----~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i-~~gG~--~-t~~ea~~~g--- 72 (124)
..+++.|.+.+.+++++-...+ ..+..-+ .+.+...+.+.+.. .++|.++ +-+.. + .+..++...
T Consensus 430 ~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~ 508 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIETSRTRVDELRERGIR-AVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPD 508 (558)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe-EEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCC
Confidence 5677888888888766654322 1112222 34444444444421 5788654 43331 2 133333332
Q ss_pred CCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 73 IPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 73 ~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
++.+.. .+...+.+.+++.|+-.++.+ ...+.+.+.+.++.|.
T Consensus 509 ~~iiar---~~~~~~~~~l~~~Gad~vv~p----~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 509 IEIIAR---AHYDDEVAYITERGANQVVMG----EREIARTMLELLETPP 551 (558)
T ss_pred CeEEEE---ECCHHHHHHHHHcCCCEEECh----HHHHHHHHHHHhcCCC
Confidence 333332 344568888889999999974 5566666666666654
No 332
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=37.59 E-value=25 Score=24.40 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=17.9
Q ss_pred cceEEecCChhhHHHHHHhCCCe
Q psy10186 53 CRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.-++|||||...++-+...|+|.
T Consensus 175 ~vlvVsHg~vir~l~~~l~~l~~ 197 (245)
T TIGR01258 175 RVLIVAHGNSLRALVKHLEGISD 197 (245)
T ss_pred EEEEEcChHHHHHHHHHHHCcCH
Confidence 35689999988888887777653
No 333
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.57 E-value=1.2e+02 Score=20.05 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=43.2
Q ss_pred CCcceE-EecCChhhHH-------------HHHHh--CCCeeeecccc----c---HHHHHHHHHHcCceeEecCC----
Q psy10186 51 PNCRLF-ISHGGVNSAL-------------EAIHY--GIPIIGVPFYG----D---QLSHVRHIVDLGAGVELSYF---- 103 (124)
Q Consensus 51 ~~~d~~-i~~gG~~t~~-------------ea~~~--g~P~l~~P~~~----~---q~~~a~~~~~~g~g~~~~~~---- 103 (124)
..+|++ |..+..+|+. -+++. ++|++++|..+ + ...|...+.+.|.-++-...
T Consensus 76 ~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la 155 (182)
T PRK07313 76 KRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLA 155 (182)
T ss_pred cccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccc
Confidence 678874 6666554443 22444 89999999742 2 35677888887755433321
Q ss_pred --------CCCHHHHHHHHHHHhcC
Q psy10186 104 --------NITLESIAWATSIVLNN 120 (124)
Q Consensus 104 --------~~~~~~l~~~l~~ll~~ 120 (124)
--+.+++...+.+.+..
T Consensus 156 ~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 156 CGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred cCCccCCCCCCHHHHHHHHHHHhcc
Confidence 12567787777776643
No 334
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=37.50 E-value=1.1e+02 Score=19.57 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCC------------CCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCC
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDS------------IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGI 73 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~ 73 (124)
...+++.|.+.|++++=+-.+-. +.+.|.++-+++.+...+.+ + .-+-|++..|.
T Consensus 32 sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~--~-----------~i~~eal~~~~ 98 (140)
T COG1832 32 SYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAA--P-----------EVAREALEKGA 98 (140)
T ss_pred HHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhh--H-----------HHHHHHHhhCC
Confidence 44566777777777766544211 22355666666655444433 1 24678888897
Q ss_pred CeeeecccccHHHHHHHHHHcCceeEec
Q psy10186 74 PIIGVPFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 74 P~l~~P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
.++..-....-..-++.+.+.|.-++++
T Consensus 99 kv~W~QlGi~n~ea~~~~~~aG~~vV~n 126 (140)
T COG1832 99 KVVWLQLGIRNEEAAEKARDAGLDVVMD 126 (140)
T ss_pred CeEEEecCcCCHHHHHHHHHhCcHHHHH
Confidence 7777654433333667777778755543
No 335
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=37.19 E-value=1.2e+02 Score=20.01 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=12.1
Q ss_pred HHHHHHHHhhCCCeEEEE
Q psy10186 6 RTLLVTAFSRTGLTVLWR 23 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~ 23 (124)
+..+.++++..++.+.++
T Consensus 12 ~~~~~~~l~~~g~~v~~~ 29 (199)
T PRK13181 12 LRSVANALKRLGVEAVVS 29 (199)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 456677777777766554
No 336
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=37.13 E-value=30 Score=12.94 Aligned_cols=11 Identities=45% Similarity=0.610 Sum_probs=7.7
Q ss_pred hhHHHHHHhCC
Q psy10186 63 NSALEAIHYGI 73 (124)
Q Consensus 63 ~t~~ea~~~g~ 73 (124)
-+++||+..|.
T Consensus 4 dsllealqtg~ 14 (15)
T PF06345_consen 4 DSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHccC
Confidence 36788887764
No 337
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=36.92 E-value=1.6e+02 Score=22.02 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhCC-CeEEEEEcCCC-----------CCC--CCCcEEEeeccChHHhhc------CCCcceEEecCChhh
Q psy10186 5 MRTLLVTAFSRTG-LTVLWRYEGDS-----------IEN--LPGNVHIRKWIPQQDVLA------HPNCRLFISHGGVNS 64 (124)
Q Consensus 5 ~~~~~~~~l~~~~-~~~i~~~g~~~-----------~~~--~~~~v~~~~~~~~~~~l~------~~~~d~~i~~gG~~t 64 (124)
.+..+.+.+.+.+ -+++|++|... +.. ......+.+-....++-. ...+|++|-=||.-+
T Consensus 17 ~i~~~~~~~~~~~~~~~lvv~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~ 96 (360)
T COG0371 17 AINKLLEVLLKLGLSRALVVTGENTYAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKT 96 (360)
T ss_pred hhhhHHHHHHhccCCceEEEEChhHHHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHH
Confidence 3455667777665 58999998843 111 111233444444433211 135789998888633
Q ss_pred H----HHHHHhCCCeeeeccc
Q psy10186 65 A----LEAIHYGIPIIGVPFY 81 (124)
Q Consensus 65 ~----~ea~~~g~P~l~~P~~ 81 (124)
+ .-|-..|+|++.+|..
T Consensus 97 iD~aK~~A~~~~~pfIsvPT~ 117 (360)
T COG0371 97 IDTAKAAAYRLGLPFISVPTI 117 (360)
T ss_pred HHHHHHHHHHcCCCEEEecCc
Confidence 3 2356789999999985
No 338
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=36.75 E-value=1.6e+02 Score=22.95 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=44.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccC-hHH-----hhcC-CCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIP-QQD-----VLAH-PNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~-~~~-----~l~~-~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++.+.++.. +. ..++++++.--. +.. -++. ....+++.|.|. +.+.
T Consensus 4 ~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg~gv~~~t~GPG~~n~~~gla 83 (539)
T TIGR03393 4 GDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGAAALLTTFGVGELSAINGIA 83 (539)
T ss_pred HHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcCceEEEEecCccHHHHhhHHH
Confidence 457888999999999887766531 11 123444332211 111 1111 123445666654 4688
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|...++|+|++.
T Consensus 84 ~A~~d~~Pvl~I~ 96 (539)
T TIGR03393 84 GSYAEHLPVIHIV 96 (539)
T ss_pred HHhhccCCEEEEE
Confidence 9999999999984
No 339
>PF11609 DUF3248: Protein of unknown function (DUF3248); InterPro: IPR021650 This family of proteins is thought to be the product of the gene TT1592 from Thermus thermophilus however this cannot be confirmed. Currently there is no known function. ; PDB: 2E6X_A.
Probab=36.58 E-value=36 Score=18.34 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=17.6
Q ss_pred HhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHH
Q psy10186 13 FSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQD 46 (124)
Q Consensus 13 l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~ 46 (124)
|+.+|.+.+|.+|+++..+ .-+.-+++.....
T Consensus 1 L~~Lg~~LvWRiGk~e~e~--~vvVRvG~Asatp 32 (63)
T PF11609_consen 1 LEALGQHLVWRIGKAEAEE--VVVVRVGLASATP 32 (63)
T ss_dssp HHHTT--EEEEEEE-TTSS--SEEEEEEEGGGHH
T ss_pred ChhhcceeEEEeccccccC--eEEEEEeccccCc
Confidence 4567889999999986442 2233466654433
No 340
>PF14350 Beta_protein: Beta protein
Probab=36.54 E-value=55 Score=23.85 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=26.3
Q ss_pred CeeeecccccHHHHHHHHH---HcCceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 74 PIIGVPFYGDQLSHVRHIV---DLGAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 74 P~l~~P~~~~q~~~a~~~~---~~g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
|++..-...+.......+. ..|+++.+..+++..+++...+.+++.
T Consensus 99 PVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~~ 147 (347)
T PF14350_consen 99 PVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRILA 147 (347)
T ss_pred EEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHHH
Confidence 6665544443333333333 346777777777666667777776654
No 341
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.34 E-value=1.7e+02 Score=21.45 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCC--------C-----------CCCCCcEEEeeccChHH---hhcCCCcceEEecC
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDS--------I-----------ENLPGNVHIRKWIPQQD---VLAHPNCRLFISHG 60 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~--------~-----------~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~g 60 (124)
++.+...++.+++.+..++.-+.... . ...+-.+..+.|+||.+ +| -.||.-+..|
T Consensus 188 npa~~s~ieq~r~a~~p~llL~~e~~~~~~~~~~~~~~~~a~Gdv~~~~~lrvvklPFvpqddyd~LL--~lcD~n~VRG 265 (370)
T COG4394 188 NPALPSWIEQLRKADKPILLLIPEGKTQANFAKYFDNNNNADGDVFQTAKLRVVKLPFVPQDDYDELL--WLCDFNLVRG 265 (370)
T ss_pred CcchHHHHHHHHhcCCCEEEEcccchHHHHHHHHcCCCcccccchhcccceEEEEecCCcHhHHHHHH--Hhcccceeec
Confidence 34566677778877766655443321 0 00122455677888654 66 5788877777
Q ss_pred ChhhHHHHHHhCCCeeeec
Q psy10186 61 GVNSALEAIHYGIPIIGVP 79 (124)
Q Consensus 61 G~~t~~ea~~~g~P~l~~P 79 (124)
-- |+.-|...|+|++---
T Consensus 266 ED-SFVRAq~agkPflWHI 283 (370)
T COG4394 266 ED-SFVRAQLAGKPFLWHI 283 (370)
T ss_pred ch-HHHHHHHcCCCcEEEe
Confidence 55 8999999999999853
No 342
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=36.20 E-value=2.2e+02 Score=22.51 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccC-hHHh-----hc--CCCcceEEecCCh------hh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIP-QQDV-----LA--HPNCRLFISHGGV------NS 64 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~-~~~~-----l~--~~~~d~~i~~gG~------~t 64 (124)
.-+.+++.|.+.|++.++.+.+... +. ..++++++.--. +... ++ ..+..+++.|.|. +.
T Consensus 5 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~g 84 (578)
T PRK06546 5 VAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLING 84 (578)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHH
Confidence 4567899999999999887766431 11 122454333211 1111 11 1345556767653 46
Q ss_pred HHHHHHhCCCeeeec
Q psy10186 65 ALEAIHYGIPIIGVP 79 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P 79 (124)
+.+|...+.|+|++.
T Consensus 85 l~~A~~~~~Pvl~I~ 99 (578)
T PRK06546 85 LYDAHRSGAPVLAIA 99 (578)
T ss_pred HHHHHhcCCCEEEEe
Confidence 779999999999984
No 343
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=35.90 E-value=45 Score=21.82 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=17.3
Q ss_pred HHHHHHHHc-CceeEecCCCCCHHHHHHHHHHHhc
Q psy10186 86 SHVRHIVDL-GAGVELSYFNITLESIAWATSIVLN 119 (124)
Q Consensus 86 ~~a~~~~~~-g~g~~~~~~~~~~~~l~~~l~~ll~ 119 (124)
.+-..+++. |+|+.+ +.+++.+++.+.++
T Consensus 102 ~d~~~Fe~~cGVGV~V-----T~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 102 IDVAEFEKACGVGVVV-----TPEQIEAAVEKYIE 131 (164)
T ss_dssp --HHHHHHTTTTT---------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCeEE-----CHHHHHHHHHHHHH
Confidence 344444554 999999 79999999988874
No 344
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=35.79 E-value=55 Score=23.52 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=22.2
Q ss_pred CCcceEEecCChhhHHHH-----HHh--CCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEA-----IHY--GIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea-----~~~--g~P~l~~P~~ 81 (124)
.++|.+|.=||. +++.. ..+ |+|++.+|..
T Consensus 77 ~~~d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 77 AEVDAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred cCcCEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 578999988876 45443 223 9999999985
No 345
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.63 E-value=1.2e+02 Score=20.38 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHH-hhcCCCcceEEecCChh----h-HHHHHHhCCCeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQD-VLAHPNCRLFISHGGVN----S-ALEAIHYGIPIIG 77 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~gG~~----t-~~ea~~~g~P~l~ 77 (124)
+.++.+.+++++.|+.+++.....+.. ......+ ++. ..+|++|..++.. . +.++-..|+|++.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~---------~~~~~l~~~~~-~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~ 85 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRVYDAGGDDA---------KQADQIDQAIA-QKVDAIIIQHGRAEVLKPWVKRALDAGIPVVA 85 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHH---------HHHHHHHHHHH-cCCCEEEEecCChhhhHHHHHHHHHcCCCEEE
Confidence 455666777888898877653221111 0011111 222 5788877765421 2 3455667899888
Q ss_pred e
Q psy10186 78 V 78 (124)
Q Consensus 78 ~ 78 (124)
+
T Consensus 86 ~ 86 (273)
T cd06305 86 F 86 (273)
T ss_pred e
Confidence 7
No 346
>PRK00861 putative lipid kinase; Reviewed
Probab=35.32 E-value=52 Score=23.32 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCcceEEecCChhhHHHHHH----hCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIH----YGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~----~g~P~l~~P~~ 81 (124)
...|.+|.-||-||+.|.+. .+.|+-++|..
T Consensus 56 ~~~d~vv~~GGDGTl~evv~~l~~~~~~lgviP~G 90 (300)
T PRK00861 56 RGAELIIASGGDGTLSAVAGALIGTDIPLGIIPRG 90 (300)
T ss_pred cCCCEEEEECChHHHHHHHHHHhcCCCcEEEEcCC
Confidence 56789999999999988743 35677778873
No 347
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=35.24 E-value=69 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.008 Sum_probs=27.0
Q ss_pred HHHHHHHcCceeEec-CCCCCHHHHHHHHHHHhcCCCCC
Q psy10186 87 HVRHIVDLGAGVELS-YFNITLESIAWATSIVLNNPRRY 124 (124)
Q Consensus 87 ~a~~~~~~g~g~~~~-~~~~~~~~l~~~l~~ll~~~~~r 124 (124)
.++.+...|..+++. .+.+++..+.-.|.+++-||-||
T Consensus 223 i~~~l~~~~~~Vlvh~~dGwDrt~q~~sL~ql~lDpyyR 261 (353)
T PF06602_consen 223 IADLLHDEGSSVLVHCSDGWDRTSQLSSLAQLLLDPYYR 261 (353)
T ss_dssp HHHHHHTT--EEEEECTTSSSHHHHHHHHHHHHH-CGGG
T ss_pred HHHHhhccCceEEEEcCCCCcccHHHHHHHHHHHHhhhh
Confidence 355666778888886 45678888888899999899887
No 348
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=34.82 E-value=61 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=22.9
Q ss_pred CCcceEEecCChhhHHHH-----HHhCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEA-----IHYGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea-----~~~g~P~l~~P~~ 81 (124)
.++|.+|.=||. +++++ ...++|++.+|..
T Consensus 77 ~~~d~iiavGGG-s~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 77 QEADMIFAVGGG-KAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHcCCCEEEecCc
Confidence 678999988886 55554 3458999999984
No 349
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=34.55 E-value=32 Score=23.91 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=17.4
Q ss_pred cceEEecCChhhHHHHHHhCCCe
Q psy10186 53 CRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.-++|||||...++=+...+.|.
T Consensus 175 ~vlvVtHggvir~l~~~ll~~~~ 197 (247)
T PRK14115 175 RVLIAAHGNSLRALVKYLDNISD 197 (247)
T ss_pred eEEEEeChHHHHHHHHHHhCCCH
Confidence 34689999988887777777653
No 350
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=34.44 E-value=1.4e+02 Score=19.70 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=17.0
Q ss_pred ChHHhhcCCCcceEEecC------ChhhHHHHHHh
Q psy10186 43 PQQDVLAHPNCRLFISHG------GVNSALEAIHY 71 (124)
Q Consensus 43 ~~~~~l~~~~~d~~i~~g------G~~t~~ea~~~ 71 (124)
|....+......++++|| ..-..++++..
T Consensus 72 p~~~~~~~~g~ki~l~HGh~~~~~~~~~~l~~la~ 106 (172)
T COG0622 72 PEELVLEVGGVKIFLTHGHLYFVKTDLSLLEYLAK 106 (172)
T ss_pred ChhHeEEECCEEEEEECCCccccccCHHHHHHHHH
Confidence 333444436788899999 33445555443
No 351
>PRK07524 hypothetical protein; Provisional
Probab=34.41 E-value=2.1e+02 Score=22.17 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCC----CCCCC-CcEEEeeccC-hHHhhc-------CCCcceEEecCCh------hhH
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDS----IENLP-GNVHIRKWIP-QQDVLA-------HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~----~~~~~-~~v~~~~~~~-~~~~l~-------~~~~d~~i~~gG~------~t~ 65 (124)
.-+.+++.|.+.|++.+..+.++. .+... .+++++.-.. ....++ ..+..+++.|.|. +.+
T Consensus 4 ~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi 83 (535)
T PRK07524 4 CGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM 83 (535)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH
Confidence 346788999999998888776653 11121 2444333211 111111 1345677888774 567
Q ss_pred HHHHHhCCCeeee
Q psy10186 66 LEAIHYGIPIIGV 78 (124)
Q Consensus 66 ~ea~~~g~P~l~~ 78 (124)
.+|..-+.|+|++
T Consensus 84 ~~A~~~~~Pvl~i 96 (535)
T PRK07524 84 GQAYADSIPMLVI 96 (535)
T ss_pred HHHHhcCCCEEEE
Confidence 8999999999998
No 352
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.26 E-value=2.4e+02 Score=22.40 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccC-hHH-----hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIP-QQD-----VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~-~~~-----~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. +. ..++++++.-.. +.. -++ ..+..++++|.|- +.+
T Consensus 14 a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gi 93 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPL 93 (595)
T ss_pred HHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHH
Confidence 577889999999998887766531 11 123455443221 111 111 1456678888774 467
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|...+.|+|++.
T Consensus 94 a~A~~~~~Pvl~i~ 107 (595)
T PRK09107 94 QDALMDSIPLVCIT 107 (595)
T ss_pred HHHhhcCCCEEEEE
Confidence 79999999999983
No 353
>KOG2178|consensus
Probab=34.08 E-value=45 Score=25.17 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=16.2
Q ss_pred CCcceEEecCChhhHHHH
Q psy10186 51 PNCRLFISHGGVNSALEA 68 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea 68 (124)
...|++||=||-||++-|
T Consensus 167 ~~~D~iItLGGDGTvL~a 184 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYA 184 (409)
T ss_pred cceeEEEEecCCccEEEe
Confidence 789999999999998855
No 354
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=33.75 E-value=31 Score=24.04 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=16.2
Q ss_pred ceEEecCChhhHHHHHHhCCCe
Q psy10186 54 RLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
-++|||||...++=+...|.|.
T Consensus 178 iliVsHggvir~l~~~~~~~~~ 199 (249)
T PRK14120 178 VLIAAHGNSLRALVKHLDGISD 199 (249)
T ss_pred EEEEeCHHHHHHHHHHHhCCCH
Confidence 3589999987777776666553
No 355
>PRK14071 6-phosphofructokinase; Provisional
Probab=33.64 E-value=69 Score=23.77 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=25.3
Q ss_pred CCcceEEecCChhhHHHHHH----hCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIH----YGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~----~g~P~l~~P~~ 81 (124)
...|.+|.=||.+|+.-+.. .++|+|.+|-.
T Consensus 106 ~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkT 140 (360)
T PRK14071 106 LGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKT 140 (360)
T ss_pred cCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccc
Confidence 58899999999988765533 39999999985
No 356
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=33.37 E-value=65 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCcceEEecCChhhHHHH-----HHhCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEA-----IHYGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea-----~~~g~P~l~~P~~ 81 (124)
.++|++|.=||. ++..+ ...|+|++.+|..
T Consensus 79 ~~~d~IIaiGGG-sv~D~aK~iA~~~gip~I~VPTT 113 (332)
T cd08549 79 KDTEFLLGIGSG-TIIDLVKFVSFKVGKPFISVPTA 113 (332)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHcCCCEEEeCCC
Confidence 378999998886 44433 4459999999986
No 357
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=33.37 E-value=36 Score=22.50 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=17.3
Q ss_pred ceEEecCChhhHHHHHHhCCCe
Q psy10186 54 RLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
-++|+|||...++=+...|.|.
T Consensus 148 vlvVsHg~~ir~l~~~~~~~~~ 169 (208)
T COG0406 148 VLVVSHGGVIRALLAYLLGLDL 169 (208)
T ss_pred EEEEEChHHHHHHHHHhcCCCh
Confidence 4799999998877777777664
No 358
>PLN00011 cysteine synthase
Probab=33.32 E-value=1.9e+02 Score=20.93 Aligned_cols=52 Identities=27% Similarity=0.187 Sum_probs=35.4
Q ss_pred cceEEecCChhh----HHHHHHhCCCeeee-cccccHHHHHHHHHHcCceeEecCCCC
Q psy10186 53 CRLFISHGGVNS----ALEAIHYGIPIIGV-PFYGDQLSHVRHIVDLGAGVELSYFNI 105 (124)
Q Consensus 53 ~d~~i~~gG~~t----~~ea~~~g~P~l~~-P~~~~q~~~a~~~~~~g~g~~~~~~~~ 105 (124)
++.+|+.++.|+ -+-|..+|.|..++ |.... ..+.+++...|+-+.+-+.+.
T Consensus 69 ~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~i~~~GA~V~~~~~~~ 125 (323)
T PLN00011 69 KSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMS-LERRIILRALGAEVHLTDQSI 125 (323)
T ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCCc
Confidence 566666554432 34566789998885 76655 478888899998877654443
No 359
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=32.99 E-value=1.3e+02 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhCC-CeEEEEEcCC
Q psy10186 5 MRTLLVTAFSRTG-LTVLWRYEGD 27 (124)
Q Consensus 5 ~~~~~~~~l~~~~-~~~i~~~g~~ 27 (124)
.+..+.+.+.+.+ .++++++++.
T Consensus 17 ~l~~l~~~~~~~g~~~~lvvtd~~ 40 (382)
T PRK10624 17 AIGALTDEVKRRGFKKALIVTDKT 40 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcc
Confidence 4566667777777 4777777763
No 360
>PRK05858 hypothetical protein; Provisional
Probab=32.98 E-value=1.9e+02 Score=22.48 Aligned_cols=74 Identities=9% Similarity=0.153 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HHh-----hc--CCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QDV-----LA--HPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~~-----l~--~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++.+.++.. ... ..+++++.-... ... ++ ..+..+++.|.|. +.+.
T Consensus 8 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~ 87 (542)
T PRK05858 8 GRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMA 87 (542)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHH
Confidence 467888999999999888766531 111 123433332211 111 11 1445667778763 5678
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|..-+.|+|++.
T Consensus 88 ~A~~~~~Pvl~i~ 100 (542)
T PRK05858 88 AAQFNQSPLVVLG 100 (542)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999984
No 361
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=32.46 E-value=2.6e+02 Score=22.25 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCeEEEEEcC-C------C--C--CCCCCcEE-EeeccChHHhhcCCCcceEEecCChhhHHHHHHhC
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEG-D------S--I--ENLPGNVH-IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYG 72 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~-~------~--~--~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g 72 (124)
.+..+-.++.+.|..-||+--. + . + -..+..++ +.+.++...++ ..+|=|-|.-.. +=.||+.+|
T Consensus 168 ~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~edfnpisll--~~~dkvy~~ts~-mgfeall~~ 244 (671)
T COG3563 168 FLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAEDFNPISLL--QNVDKVYCVTSQ-MGFEALLCG 244 (671)
T ss_pred HHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEecccCChHHHH--HhcceeEEeecc-ccHHHHhcC
Confidence 3444555788888888886432 2 1 1 11344444 56678888888 567776555433 347999999
Q ss_pred CCeeeecc
Q psy10186 73 IPIIGVPF 80 (124)
Q Consensus 73 ~P~l~~P~ 80 (124)
+|.+....
T Consensus 245 ~~~~~fg~ 252 (671)
T COG3563 245 KPLTTFGL 252 (671)
T ss_pred Cceeeecc
Confidence 99998643
No 362
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.41 E-value=2.5e+02 Score=22.09 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccCh-HH-----hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIPQ-QD-----VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~~-~~-----~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. +. ..++++++.-... .. -++ ..+..++++|.|- +.+
T Consensus 7 ~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi 86 (572)
T PRK08979 7 ASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI 86 (572)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH
Confidence 467889999999988887766531 11 1224544332221 11 111 1456677888774 457
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-++|+|++.
T Consensus 87 a~A~~~~~Pvl~i~ 100 (572)
T PRK08979 87 ATAYMDSIPMVVLS 100 (572)
T ss_pred HHHhhcCCCEEEEe
Confidence 79999999999983
No 363
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=32.34 E-value=1.4e+02 Score=19.03 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=22.9
Q ss_pred eccChHHhhcCCCcceEEecCCh---hhHHHHHHhCC---Ceeee
Q psy10186 40 KWIPQQDVLAHPNCRLFISHGGV---NSALEAIHYGI---PIIGV 78 (124)
Q Consensus 40 ~~~~~~~~l~~~~~d~~i~~gG~---~t~~ea~~~g~---P~l~~ 78 (124)
......+++ ++||+++..|.. +|+-+-+.... +.+++
T Consensus 52 ~~~~~~~~l--~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 52 PDEDAEEIL--PWADVVIITGSTLVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp EGGGHHHHG--GG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEE
T ss_pred CHHHHHHHH--ccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEE
Confidence 444566677 899999998853 55555444444 66665
No 364
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=32.07 E-value=1.8e+02 Score=20.44 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=16.8
Q ss_pred CCcceEEecCChhhHH--------------HHHHhCCCeeee
Q psy10186 51 PNCRLFISHGGVNSAL--------------EAIHYGIPIIGV 78 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~--------------ea~~~g~P~l~~ 78 (124)
+.+|.+|-.||..+.+ +....|+|++.+
T Consensus 37 ~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGi 78 (248)
T PLN02832 37 EGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGT 78 (248)
T ss_pred ccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEE
Confidence 4566666666654443 333357887776
No 365
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=32.04 E-value=63 Score=24.49 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=26.7
Q ss_pred hcCCCcceEEecCChhhHHHHHH-------h--CCCeeeeccc
Q psy10186 48 LAHPNCRLFISHGGVNSALEAIH-------Y--GIPIIGVPFY 81 (124)
Q Consensus 48 l~~~~~d~~i~~gG~~t~~ea~~-------~--g~P~l~~P~~ 81 (124)
|.....|.+|.=||-+|..-|.. . ++|++.+|..
T Consensus 108 L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkT 150 (403)
T PRK06555 108 LAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKT 150 (403)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeee
Confidence 33368999999999988766633 2 7999999985
No 366
>PRK13462 acid phosphatase; Provisional
Probab=31.99 E-value=44 Score=22.36 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=16.2
Q ss_pred cceEEecCChhhHHHHHHhCCC
Q psy10186 53 CRLFISHGGVNSALEAIHYGIP 74 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P 74 (124)
.-++|+|||....+=+-..|.|
T Consensus 141 ~vliVsHg~vir~ll~~~l~~~ 162 (203)
T PRK13462 141 DVVFVSHGHFSRAVITRWVELP 162 (203)
T ss_pred CEEEEeCCHHHHHHHHHHhCCC
Confidence 3468999988776666667765
No 367
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.94 E-value=1.6e+02 Score=19.75 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh--hhHHHHHHhCCCeeee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV--NSALEAIHYGIPIIGV 78 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~--~t~~ea~~~g~P~l~~ 78 (124)
.+..+.+.+.+.|+.+++.....+.. .-......+...++|++|.-+.. ....+.+..++|++.+
T Consensus 17 ~~~gi~~~~~~~gy~~~~~~~~~~~~---------~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~~iPvV~i 83 (265)
T cd06290 17 ILKGMERGLNGSGYSPIIATGHWNQS---------RELEALELLKSRRVDALILLGGDLPEEEILALAEEIPVLAV 83 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHH---------HHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHhcCCCEEEE
Confidence 34455556677888887754322111 00011111222457776554432 2334555667888776
No 368
>PRK08617 acetolactate synthase; Reviewed
Probab=31.67 E-value=1.9e+02 Score=22.52 Aligned_cols=74 Identities=14% Similarity=0.250 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HHh-----hc--CCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QDV-----LA--HPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~~-----l~--~~~~d~~i~~gG~------~t~~ 66 (124)
.+.+++.|.+.|++.++.+.++.. ... ..+++++.-... ... ++ ..+..++++|.|- +.+.
T Consensus 8 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~ 87 (552)
T PRK08617 8 ADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLV 87 (552)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHH
Confidence 567889999999988887766531 111 123443332221 111 11 1345667887764 5678
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|..-+.|+|++.
T Consensus 88 ~A~~~~~Pvlvis 100 (552)
T PRK08617 88 TATAEGDPVVAIG 100 (552)
T ss_pred HHhhcCCCEEEEe
Confidence 9999999999984
No 369
>PRK12361 hypothetical protein; Provisional
Probab=31.51 E-value=61 Score=25.30 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=24.2
Q ss_pred CCcceEEecCChhhHHHHHH----hCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIH----YGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~----~g~P~l~~P~~ 81 (124)
...|.+|.-||-||+.|.+. .++|+-++|..
T Consensus 296 ~~~d~Viv~GGDGTl~ev~~~l~~~~~~lgiiP~G 330 (547)
T PRK12361 296 AGADIVIACGGDGTVTEVASELVNTDITLGIIPLG 330 (547)
T ss_pred cCCCEEEEECCCcHHHHHHHHHhcCCCCEEEecCC
Confidence 46789999999999888763 35777778873
No 370
>PRK07586 hypothetical protein; Validated
Probab=31.38 E-value=2.4e+02 Score=21.69 Aligned_cols=74 Identities=18% Similarity=0.115 Sum_probs=45.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccChH-H-----hhc--CCCcceEEecCChh------hH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQQ-D-----VLA--HPNCRLFISHGGVN------SA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~~-~-----~l~--~~~~d~~i~~gG~~------t~ 65 (124)
-+.+++.|++.|++.++.+.++.. +.. .++++++.-.... . -++ ..+..+++.|.|-| .+
T Consensus 4 ~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl 83 (514)
T PRK07586 4 AESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANL 83 (514)
T ss_pred HHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHH
Confidence 467889999999998887766531 111 2345544432211 1 111 14455677777643 34
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-++|+|++.
T Consensus 84 ~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 84 HNARRARTPIVNIV 97 (514)
T ss_pred HHHHhcCCCEEEEe
Confidence 47999999999984
No 371
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=31.18 E-value=1.6e+02 Score=19.76 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=29.3
Q ss_pred ChHHhhcCCCcceEEecCChh--hHHHHH-HhCCCeeeecccccHHHHHHHHHH
Q psy10186 43 PQQDVLAHPNCRLFISHGGVN--SALEAI-HYGIPIIGVPFYGDQLSHVRHIVD 93 (124)
Q Consensus 43 ~~~~~l~~~~~d~~i~~gG~~--t~~ea~-~~g~P~l~~P~~~~q~~~a~~~~~ 93 (124)
+.+.++. -.-|+++..+..+ ...+.+ ..|.|++.++....-....+.+..
T Consensus 50 n~E~i~~-l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~ 102 (235)
T cd01149 50 SAEGVLS-LKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQ 102 (235)
T ss_pred CHHHhhc-cCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHH
Confidence 3444444 7899998866432 345655 578999988643333334444443
No 372
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.13 E-value=29 Score=18.97 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=18.8
Q ss_pred cceEEecCChhhHHHHHHhCCCe
Q psy10186 53 CRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.|.+++.-|..|..||+..|++.
T Consensus 24 ~dhvL~~LGgrT~~eAL~~G~dp 46 (63)
T PF11248_consen 24 RDHVLSELGGRTAAEALEAGVDP 46 (63)
T ss_pred HhcchhhcCCcCHHHHHHcCCCH
Confidence 46677777888999999999874
No 373
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=30.93 E-value=1.4e+02 Score=18.64 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=44.9
Q ss_pred HHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccChHH--------hhcCCCcceEEecCCh------hhHHHH
Q psy10186 8 LLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQQD--------VLAHPNCRLFISHGGV------NSALEA 68 (124)
Q Consensus 8 ~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~~~--------~l~~~~~d~~i~~gG~------~t~~ea 68 (124)
.+++.|.+.|++.++.+.++.. ... ...++++....... -....+..++++|+|. +.+.+|
T Consensus 2 ~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A 81 (155)
T cd07035 2 ALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANA 81 (155)
T ss_pred HHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHH
Confidence 5788999999988887766431 111 23344444333211 1111345577888553 567788
Q ss_pred HHhCCCeeeecc
Q psy10186 69 IHYGIPIIGVPF 80 (124)
Q Consensus 69 ~~~g~P~l~~P~ 80 (124)
...+.|+|++.-
T Consensus 82 ~~~~~Pll~i~~ 93 (155)
T cd07035 82 YLDSIPLLVITG 93 (155)
T ss_pred HhhCCCEEEEeC
Confidence 999999999843
No 374
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.82 E-value=1.7e+02 Score=19.71 Aligned_cols=67 Identities=12% Similarity=0.001 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecC---ChhhHHHHHHhCCCeeeec
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHG---GVNSALEAIHYGIPIIGVP 79 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~g---G~~t~~ea~~~g~P~l~~P 79 (124)
+.+..+.+++.+.|+.+++.....+.. ......+.+....+|++|-.+ ....+.+....++|++.+-
T Consensus 16 ~~~~gi~~~~~~~gy~v~~~~~~~~~~---------~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~pvV~i~ 85 (269)
T cd06293 16 ELADAVEEEADARGLSLVLCATRNRPE---------RELTYLRWLDTNHVDGLIFVTNRPDDGALAKLINSYGNIVLVD 85 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHH---------HHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 455566677778898887775432211 000111112224566655433 2223455556677777763
No 375
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=30.61 E-value=1e+02 Score=21.82 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=16.3
Q ss_pred hhhHHHHHHhCCCeeeeccc
Q psy10186 62 VNSALEAIHYGIPIIGVPFY 81 (124)
Q Consensus 62 ~~t~~ea~~~g~P~l~~P~~ 81 (124)
.+..+|+..+|+|.|.+...
T Consensus 107 VaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 107 VAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HHHHHHHHHcCccceeeeeh
Confidence 35567999999999998664
No 376
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.61 E-value=1.8e+02 Score=19.92 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh---hhHHHHHHhCCCeeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV---NSALEAIHYGIPIIGV 78 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~---~t~~ea~~~g~P~l~~ 78 (124)
+.++.+.+++++.|+.+++...... ......+....+|++|..+.. -.+-++...|+|++.+
T Consensus 21 ~~~~gi~~~a~~~g~~~~~~~~~~~-------------~~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 21 QFLAGVAEVLDAAGVNLLLLPASSE-------------DSDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVVV 85 (283)
T ss_pred HHHHHHHHHHHHCCCEEEEecCccH-------------HHHHHHHHhcCCCEEEEeCCCCChHHHHHHHHcCCCEEEE
Confidence 3566677777888999888764320 011111122567776665432 1233445668888776
No 377
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=30.06 E-value=2.7e+02 Score=21.80 Aligned_cols=74 Identities=15% Similarity=0.323 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC-CCcEEEeeccCh-HHhhc-------CCCcceEEecCCh------hhHH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL-PGNVHIRKWIPQ-QDVLA-------HPNCRLFISHGGV------NSAL 66 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~-~~~v~~~~~~~~-~~~l~-------~~~~d~~i~~gG~------~t~~ 66 (124)
-+.+++.|.+.|++.++...++.. +.. ..+++++.-... ...++ ..+..++++|.|- +.+.
T Consensus 11 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~ 90 (561)
T PRK06048 11 ARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIA 90 (561)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHH
Confidence 467888999999988887766531 111 123444332211 11111 1456678888764 5678
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+|.+.+.|+|++.
T Consensus 91 ~A~~~~~Pvl~i~ 103 (561)
T PRK06048 91 TAYMDSVPIVALT 103 (561)
T ss_pred HHhhcCCCEEEEe
Confidence 9999999999983
No 378
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=29.99 E-value=2.7e+02 Score=21.82 Aligned_cols=75 Identities=13% Similarity=0.319 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccC-h----HH-hhc--CCCcceEEecCCh------hh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIP-Q----QD-VLA--HPNCRLFISHGGV------NS 64 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~-~----~~-~l~--~~~~d~~i~~gG~------~t 64 (124)
.-+.+++.|.+.|++.++.+.++.. +. ..++++++.--. + +. -++ ..+..++++|.|. +.
T Consensus 5 ~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~g 84 (574)
T PRK09124 5 VADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLING 84 (574)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHH
Confidence 4577889999999988887766531 11 122344332211 1 11 111 1345556777664 46
Q ss_pred HHHHHHhCCCeeeec
Q psy10186 65 ALEAIHYGIPIIGVP 79 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P 79 (124)
+.+|..-++|+|++.
T Consensus 85 i~~A~~~~~Pvl~i~ 99 (574)
T PRK09124 85 LFDCHRNHVPVLAIA 99 (574)
T ss_pred HHHHhhcCCCEEEEe
Confidence 789999999999983
No 379
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=29.97 E-value=79 Score=23.26 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=22.8
Q ss_pred CCcceEEecCChhhHHHH-----HHhCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEA-----IHYGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea-----~~~g~P~l~~P~~ 81 (124)
.++|.+|.=||. +++.+ ...++|++.+|..
T Consensus 83 ~~~d~IIavGGG-sv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 83 NGCDVVIGIGGG-KTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred cCCCEEEEecCh-HHHHHHHHHHHHcCCCEEEeCCc
Confidence 578999999886 45443 3458999999984
No 380
>PRK13695 putative NTPase; Provisional
Probab=29.63 E-value=1.6e+02 Score=18.87 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=32.8
Q ss_pred HHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHh
Q psy10186 65 ALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118 (124)
Q Consensus 65 ~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll 118 (124)
+.+++..|.|+|++-....-...++++..+-=|.++.-..-+++++...|.+-+
T Consensus 119 l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 119 VEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred HHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 346668899988875432222456667776434444434446788877776543
No 381
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=29.57 E-value=2.8e+02 Score=21.76 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=46.2
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC-------CCC--CCcEEEeeccCh-HH-----hhc--CCCcceEEecCCh------
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI-------ENL--PGNVHIRKWIPQ-QD-----VLA--HPNCRLFISHGGV------ 62 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~-------~~~--~~~v~~~~~~~~-~~-----~l~--~~~~d~~i~~gG~------ 62 (124)
.+.+++.|.+.|++.++.+.++.. .+. .++++++.-... .. -++ ..+..++++|.|-
T Consensus 5 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l 84 (572)
T PRK06456 5 ARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTTNLV 84 (572)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHH
Confidence 467899999999999888766531 111 123544433221 11 111 1345567777764
Q ss_pred hhHHHHHHhCCCeeeec
Q psy10186 63 NSALEAIHYGIPIIGVP 79 (124)
Q Consensus 63 ~t~~ea~~~g~P~l~~P 79 (124)
+.+.+|...++|+|++.
T Consensus 85 ~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 85 TGLITAYWDSSPVIAIT 101 (572)
T ss_pred HHHHHHHhhCCCEEEEe
Confidence 45689999999999984
No 382
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=29.54 E-value=1.2e+02 Score=22.57 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred HhhcCCCcceEEecCChh---hHHHHHHhCCCeee
Q psy10186 46 DVLAHPNCRLFISHGGVN---SALEAIHYGIPIIG 77 (124)
Q Consensus 46 ~~l~~~~~d~~i~~gG~~---t~~ea~~~g~P~l~ 77 (124)
++..+..+|++||.||.+ -++++ .|.|...
T Consensus 80 ~Li~~~~VD~iVTTganl~eeD~~k~--~g~~~y~ 112 (347)
T PRK02492 80 DLVRNNMVDAIVATGANIVDQDFFEA--LGFKHYQ 112 (347)
T ss_pred HHHHcCCeeEEEECCCCchHHHHHHH--cCCCeec
Confidence 355568899999999865 34444 4556555
No 383
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=29.53 E-value=1.8e+02 Score=19.63 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh--------hhHHHHHHhCCCe
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV--------NSALEAIHYGIPI 75 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~--------~t~~ea~~~g~P~ 75 (124)
+.++.+.+.+++.|+.++......+.... .. -...++. ..+|++|-.++. ..+-++...++|+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~------~~--~i~~l~~-~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipv 86 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERE------RK--CLENMLS-QGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPY 86 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHH------HH--HHHHHHH-cCCCEEEEeccccccccccHHHHHHHHHCCCCE
Confidence 34556666777788888765533221100 00 0111233 567777665432 1123455678888
Q ss_pred eee
Q psy10186 76 IGV 78 (124)
Q Consensus 76 l~~ 78 (124)
+.+
T Consensus 87 V~~ 89 (273)
T cd01541 87 VFI 89 (273)
T ss_pred EEE
Confidence 876
No 384
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=29.49 E-value=1.8e+02 Score=19.46 Aligned_cols=65 Identities=20% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh-h-hHHHHHHhCCCeeee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV-N-SALEAIHYGIPIIGV 78 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~-~-t~~ea~~~g~P~l~~ 78 (124)
+...+.+++.+.|+.+++.....+.. ........+...++|++|-.++. . +..+++..|+|++.+
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~ipvv~~ 83 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPE---------REQEYLDLLRRKQADGIILLDGSLPPTALTALAKLPPIVQA 83 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChH---------HHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhcCCCEEEE
Confidence 44556666777888876554322111 00011111222567776554432 2 244666678888876
No 385
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=29.43 E-value=73 Score=23.21 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=22.9
Q ss_pred CCcceEEecCChhhHHHH-----HHhCCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEA-----IHYGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea-----~~~g~P~l~~P~~ 81 (124)
.++|.+|.=||. +++.+ ...++|++.+|..
T Consensus 76 ~~~D~IIavGGG-S~iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 76 NGADVVIGIGGG-KTLDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred cCCCEEEEecCc-hhhHHHHHHHHHcCCCEEEeCCc
Confidence 588999998887 45543 3358999999984
No 386
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=29.30 E-value=3e+02 Score=22.82 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=38.3
Q ss_pred cCChhhHHHHHHhCCCeeeeccc-cc---HHHHHHHHHHc-----CceeEecCCCC--------CHHHHHHHHHHHh
Q psy10186 59 HGGVNSALEAIHYGIPIIGVPFY-GD---QLSHVRHIVDL-----GAGVELSYFNI--------TLESIAWATSIVL 118 (124)
Q Consensus 59 ~gG~~t~~ea~~~g~P~l~~P~~-~~---q~~~a~~~~~~-----g~g~~~~~~~~--------~~~~l~~~l~~ll 118 (124)
|+||.++.-+++.|--.+++|-. .+ ....++.+++. +.++++-.+.. ..+.+.+.+++-+
T Consensus 196 ~~G~LAl~aalA~gad~iliPE~~~~~~~~~~i~~~l~~~~~~gk~~~iIvvaEG~~d~~g~~i~~~~l~~~l~~~~ 272 (745)
T TIGR02478 196 HCGYLALMAAIATGADYVFIPERPPEEGWEDQLCHKLKRNRKAGKRKNIVIVAEGAIDRDLNPITSEDVKDVLVERL 272 (745)
T ss_pred cccHHHHHHHhccCCCEEEecCCCCCchHHHHHHHHHHHHHHcCCCcEEEEEeCCcccccCCcccHHHHHHHHHHhc
Confidence 77999999999999999999875 34 33444445443 45554432222 4566676665543
No 387
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=29.14 E-value=1.5e+02 Score=18.57 Aligned_cols=88 Identities=18% Similarity=0.080 Sum_probs=43.9
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcC-CCcceEEecCCh--hhHHHHHHhCCCeeeecccc
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGV--NSALEAIHYGIPIIGVPFYG 82 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~--~t~~ea~~~g~P~l~~P~~~ 82 (124)
..++++.....|++++|+-...+.....+++....+-...+.+.. +..-++++|+.. -.+++.+... |.-++-..+
T Consensus 10 a~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~th~h~~D~~~L~~~l~~-~~~YiG~lG 88 (136)
T PF13478_consen 10 ARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAVVMTHDHELDAEALEAALAS-PARYIGLLG 88 (136)
T ss_dssp HHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EEE--S-CCCHHHHHHHHTTS-S-SEEEESS
T ss_pred HHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEEEEcCCchhHHHHHHHHHcC-CCCEEEeec
Confidence 356777778899999998877542223444443332211111122 445567888864 3344444433 555555567
Q ss_pred cHHHHHHHHHHc
Q psy10186 83 DQLSHVRHIVDL 94 (124)
Q Consensus 83 ~q~~~a~~~~~~ 94 (124)
.+...+.+++++
T Consensus 89 S~~k~~~~~~~L 100 (136)
T PF13478_consen 89 SRRKAARRLERL 100 (136)
T ss_dssp -HHHHHHHCCCH
T ss_pred CchHHHHHHHHh
Confidence 777777766554
No 388
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=29.08 E-value=84 Score=21.34 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=20.0
Q ss_pred hhhHHHHHHhCCCeeeecccc--cHHHHHHHHHHcC
Q psy10186 62 VNSALEAIHYGIPIIGVPFYG--DQLSHVRHIVDLG 95 (124)
Q Consensus 62 ~~t~~ea~~~g~P~l~~P~~~--~q~~~a~~~~~~g 95 (124)
..|+-.|+..|+|+.++|-.. +...-...+-+.|
T Consensus 171 ~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G 206 (212)
T PF02481_consen 171 LHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG 206 (212)
T ss_dssp HHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC
Confidence 467778999999999997753 3455555666666
No 389
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=28.97 E-value=44 Score=23.81 Aligned_cols=31 Identities=35% Similarity=0.493 Sum_probs=25.8
Q ss_pred CCcceEEecCChhhHHHHHHh----CCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY----GIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~----g~P~l~~P~~ 81 (124)
...|.+|.=||.+|+..|... ++|++.+|..
T Consensus 91 ~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkT 125 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKT 125 (282)
T ss_dssp TTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEE
T ss_pred hCCCEEEEecCCCHHHHHHHHHhcCceEEEEEecc
Confidence 589999999999988877443 5999999985
No 390
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.59 E-value=1.7e+02 Score=20.43 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhh---HHHHHHhCCCeeeecc
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNS---ALEAIHYGIPIIGVPF 80 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t---~~ea~~~g~P~l~~P~ 80 (124)
.+..+-+.+++.|+.+++....+.... . .++. .++. .++|++|-.+-... +......+.|++.+-.
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~-----e--~~i~--~l~~-~~vDGiI~~s~~~~~~~l~~~~~~~iPvV~~~~ 87 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEK-----E--EYIE--LLLQ-RRVDGIILASSENDDEELRRLIKSGIPVVLIDR 87 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHH-----H--HHHH--HHHH-TTSSEEEEESSSCTCHHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHH-----H--HHHH--HHHh-cCCCEEEEecccCChHHHHHHHHcCCCEEEEEe
Confidence 445555566778998877554332211 1 2221 1222 56777655543322 3344455688887643
No 391
>PRK10736 hypothetical protein; Provisional
Probab=28.49 E-value=2e+02 Score=21.58 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=35.4
Q ss_pred CCcceEEe---cCC-hhhHHHHHHhCCCeeeeccccc--HHHHHHHHHHcCceeEecCCCCCHHHHHHHH
Q psy10186 51 PNCRLFIS---HGG-VNSALEAIHYGIPIIGVPFYGD--QLSHVRHIVDLGAGVELSYFNITLESIAWAT 114 (124)
Q Consensus 51 ~~~d~~i~---~gG-~~t~~ea~~~g~P~l~~P~~~~--q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l 114 (124)
..+-+|+. ++| ..|.-.|+..|+++.++|-..+ ...-.+.+-+.|+..+. +.+++.+.+
T Consensus 219 S~~viVvEA~~kSGsliTA~~Al~~gR~VfavPG~i~~~~s~G~n~LI~~GA~lv~-----~~~Di~~~l 283 (374)
T PRK10736 219 SKGVLVVEAALRSGSLVTARCALEQGRDVFALPGPIGNPGSEGPHWLIKQGAYLVT-----SPEDILENL 283 (374)
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHhCCeEEEEcCCCCCccchhHHHHHHCCCEEeC-----CHHHHHHHh
Confidence 33334454 344 4677789999999999986432 23334444455744444 466666555
No 392
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=28.34 E-value=80 Score=24.75 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCC--CCCC-CCcEEEeeccChH-Hh-----hc--CCCcceEEecCChhh------HHH
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDS--IENL-PGNVHIRKWIPQQ-DV-----LA--HPNCRLFISHGGVNS------ALE 67 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~--~~~~-~~~v~~~~~~~~~-~~-----l~--~~~~d~~i~~gG~~t------~~e 67 (124)
.-+.+++.|.+.|++.++.+.... .... .++++++...... .. ++ ..+..+++++.|.|. +.+
T Consensus 16 ~a~~i~~~L~~~GV~~vFG~~~~~~~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~ 95 (578)
T PRK06112 16 VAHAIARALKRHGVEQIFGQSLPSALFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAE 95 (578)
T ss_pred HHHHHHHHHHHCCCCEEeecccchHhHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHH
Confidence 357789999999998888542111 1111 1234433332211 11 11 145667888888766 899
Q ss_pred HHHhCCCeeeec
Q psy10186 68 AIHYGIPIIGVP 79 (124)
Q Consensus 68 a~~~g~P~l~~P 79 (124)
|...+.|+|++.
T Consensus 96 A~~~~~Pvl~I~ 107 (578)
T PRK06112 96 ALKASVPIVALV 107 (578)
T ss_pred HhhcCCCEEEEe
Confidence 999999999984
No 393
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=28.29 E-value=3.1e+02 Score=21.84 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccCh-HHh-----h--cCCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQ-QDV-----L--AHPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~-~~~-----l--~~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. ... .++++++.--.. ... + ...+..++++|.|- +.+
T Consensus 34 a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl 113 (612)
T PRK07789 34 AQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI 113 (612)
T ss_pred HHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH
Confidence 578889999999988887766531 111 123444332211 111 1 11456668888774 467
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-+.|+|++.
T Consensus 114 ~~A~~~~~PllvI~ 127 (612)
T PRK07789 114 ADANMDSVPVVAIT 127 (612)
T ss_pred HHHhhcCCCEEEEe
Confidence 78999999999984
No 394
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=28.28 E-value=1.1e+02 Score=23.31 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEE--EcCC--CCCC--CCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHHHhCCCee
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWR--YEGD--SIEN--LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPII 76 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~--~g~~--~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l 76 (124)
..-+..+-+.|++.|+.+++- +|.. ..++ ..+.+.-+=.+...++-. ..+.. +..+|-.=+-.|...|+|+|
T Consensus 197 Tp~V~~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li~~G~~~~VlDlTttEl~d-~l~GG-v~sagp~Rl~AA~~~GIP~V 274 (403)
T PF06792_consen 197 TPCVDAIRERLEEEGYEVLVFHATGTGGRAMERLIREGQFDGVLDLTTTELAD-ELFGG-VLSAGPDRLEAAARAGIPQV 274 (403)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHcCCcEEEEECcHHHHHH-HHhCC-CCCCCchHHHHHHHcCCCEE
Confidence 455677788888888877654 3332 1111 123344222333333332 22333 67778778888999999999
Q ss_pred eeccc
Q psy10186 77 GVPFY 81 (124)
Q Consensus 77 ~~P~~ 81 (124)
+.|-.
T Consensus 275 vs~Ga 279 (403)
T PF06792_consen 275 VSPGA 279 (403)
T ss_pred EecCc
Confidence 98874
No 395
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.07 E-value=14 Score=24.16 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV 62 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~ 62 (124)
=.++++.+..+|.+++..-............ ...+.+..+++ +.+|+++.|.-.
T Consensus 48 G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~-~~~~~~l~ell--~~aDiv~~~~pl 101 (178)
T PF02826_consen 48 GRAVARRLKAFGMRVIGYDRSPKPEEGADEF-GVEYVSLDELL--AQADIVSLHLPL 101 (178)
T ss_dssp HHHHHHHHHHTT-EEEEEESSCHHHHHHHHT-TEEESSHHHHH--HH-SEEEE-SSS
T ss_pred cCeEeeeeecCCceeEEecccCChhhhcccc-cceeeehhhhc--chhhhhhhhhcc
Confidence 3567888888898886665443211100111 12556888888 789999888853
No 396
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=28.02 E-value=2e+02 Score=19.51 Aligned_cols=51 Identities=12% Similarity=-0.205 Sum_probs=30.8
Q ss_pred hCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCCC
Q psy10186 71 YGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 71 ~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
.+.|+|++-...+....+. ....|+.=.+. ++.+.++|.++|+.++....|
T Consensus 80 p~~~vvvlt~~~~~~~~~~-~~~~Ga~G~l~-K~~~~~~L~~aI~~v~~G~~~ 130 (216)
T PRK10100 80 NNIKILLLNTPEDYPYREI-ENWPHINGVFY-AMEDQERVVNGLQGVLRGECY 130 (216)
T ss_pred CCCcEEEEECCchhHHHHH-HHhcCCeEEEE-CCCCHHHHHHHHHHHHcCCcc
Confidence 4677888765555322211 12246643343 345899999999998876543
No 397
>PRK10586 putative oxidoreductase; Provisional
Probab=27.93 E-value=90 Score=23.10 Aligned_cols=77 Identities=21% Similarity=0.372 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhCC-CeEEEEEcCCCC-----------CCCCCcE-EEeeccChHH---hh--cCCCcceEEecCChhhH
Q psy10186 4 GMRTLLVTAFSRTG-LTVLWRYEGDSI-----------ENLPGNV-HIRKWIPQQD---VL--AHPNCRLFISHGGVNSA 65 (124)
Q Consensus 4 ~~~~~~~~~l~~~~-~~~i~~~g~~~~-----------~~~~~~v-~~~~~~~~~~---~l--~~~~~d~~i~~gG~~t~ 65 (124)
..+.++.+.+.+.+ -++++++|+... .+..-.+ .+.+..+... +. ....+|++|.=||. ++
T Consensus 20 ga~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~~~~d~iiavGGG-s~ 98 (362)
T PRK10586 20 GSIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASGDDRQVVIGVGGG-AL 98 (362)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhccCCCEEEEecCc-HH
Confidence 35667777888877 588888876431 1111112 1222233221 11 11357999988876 45
Q ss_pred HHHH-----HhCCCeeeeccc
Q psy10186 66 LEAI-----HYGIPIIGVPFY 81 (124)
Q Consensus 66 ~ea~-----~~g~P~l~~P~~ 81 (124)
+.+. ..++|++.+|..
T Consensus 99 iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 99 LDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred HHHHHHHHhhcCCCEEEEeCC
Confidence 5443 348999999974
No 398
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=27.86 E-value=1.1e+02 Score=23.69 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=26.5
Q ss_pred HHhhcCCCcceEEecCChhhHHHHHHhCCCeeee
Q psy10186 45 QDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 45 ~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~ 78 (124)
..++.|+..|+++..||....-.+...++|++..
T Consensus 180 ~~L~~~~~vd~V~fTGs~~v~~~a~~~~~pv~~e 213 (488)
T TIGR02518 180 NELMKNKDTSLILATGGEAMVKAAYSSGTPAIGV 213 (488)
T ss_pred HHHHhCCCcCEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 3467778899999999998666666678998764
No 399
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=27.85 E-value=1.8e+02 Score=19.40 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh--hhHHHH-HHhCCCeeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV--NSALEA-IHYGIPIIGV 78 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~--~t~~ea-~~~g~P~l~~ 78 (124)
+.+..+-+++++.|+++++.....+.... ...+ ..+.. ..+|++|.-+.. ...++. ...|+|++.+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~------~~~i--~~l~~-~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNFSIEKE------IEAL--ELLAR-QKVDGIILLATTITDEHREAIKKLNVPVVVV 84 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHH------HHHH--HHHHh-cCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 44555666777889988776543221100 0111 11222 567776654432 123333 3457788765
No 400
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=27.48 E-value=79 Score=18.03 Aligned_cols=46 Identities=28% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHhCCCeeeecccccHHHHHHHHHHcCceeEec-----CCCCCHHHHHHHHHHHh
Q psy10186 69 IHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELS-----YFNITLESIAWATSIVL 118 (124)
Q Consensus 69 ~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~-----~~~~~~~~l~~~l~~ll 118 (124)
.+.|+|.|.- -...-...++.++.|.... ..+++.+++.++++--.
T Consensus 19 i~gGkP~I~G----tRI~V~~Il~~l~~G~s~eeil~dyp~Lt~~dI~aal~ya~ 69 (79)
T COG2442 19 ICGGKPCIRG----TRIPVWDILEMLAAGESIEEILADYPDLTLEDIRAALRYAA 69 (79)
T ss_pred ccCCcceEeC----ceecHHHHHHHHHCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5668998884 3333333444444554433 34688999999887543
No 401
>PRK06186 hypothetical protein; Validated
Probab=27.44 E-value=99 Score=21.48 Aligned_cols=34 Identities=24% Similarity=0.120 Sum_probs=26.0
Q ss_pred CCcceEEecCChh---------hHHHHHHhCCCeeeecccccHH
Q psy10186 51 PNCRLFISHGGVN---------SALEAIHYGIPIIGVPFYGDQL 85 (124)
Q Consensus 51 ~~~d~~i~~gG~~---------t~~ea~~~g~P~l~~P~~~~q~ 85 (124)
..+|+++..||.| .+-.|...++|++.+-+ +-|.
T Consensus 52 ~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGICl-GmQ~ 94 (229)
T PRK06186 52 AGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCG-GFQH 94 (229)
T ss_pred hhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeech-hhHH
Confidence 7899999999864 45677889999999844 3443
No 402
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=27.40 E-value=1.9e+02 Score=19.09 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=34.1
Q ss_pred cCChhhHHHHHHhCCC---eeeecccccHHHHHHHHHHcCceeEecCCCCC
Q psy10186 59 HGGVNSALEAIHYGIP---IIGVPFYGDQLSHVRHIVDLGAGVELSYFNIT 106 (124)
Q Consensus 59 ~gG~~t~~ea~~~g~P---~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~ 106 (124)
|+=.+.++++...|++ ..+.--..-...-+..+.+.|+..++..+...
T Consensus 79 HAE~NAil~aa~~g~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~ 129 (164)
T COG2131 79 HAEQNAILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYP 129 (164)
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCC
Confidence 5566899999999999 33332234456678889999998888755433
No 403
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=27.30 E-value=1.9e+02 Score=19.19 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=11.6
Q ss_pred HHHHHHHhhCCCeEEEEE
Q psy10186 7 TLLVTAFSRTGLTVLWRY 24 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~ 24 (124)
.+-+++|++.+.+++++.
T Consensus 14 ~e~~~~l~~~G~~v~~~s 31 (198)
T cd03130 14 PENLELLEAAGAELVPFS 31 (198)
T ss_pred HHHHHHHHHCCCEEEEEC
Confidence 455667777777766544
No 404
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=27.17 E-value=2.2e+02 Score=19.74 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCC-----CCC-cEEE---------eeccC-hHHhhcCCCcceEEecCChhhHHH
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIEN-----LPG-NVHI---------RKWIP-QQDVLAHPNCRLFISHGGVNSALE 67 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~-----~~~-~v~~---------~~~~~-~~~~l~~~~~d~~i~~gG~~t~~e 67 (124)
..+..+++.|.+.|..+.+......... ... .... ..... ...++...+.|++.+|+......-
T Consensus 23 ~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~ 102 (335)
T cd03802 23 RVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAERALAAGDFDIVHNHSLHLPLPF 102 (335)
T ss_pred HHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchhh
Confidence 3467889999999988877765433111 000 0000 00000 122333367999999998766656
Q ss_pred HHHhCCCeeeecc
Q psy10186 68 AIHYGIPIIGVPF 80 (124)
Q Consensus 68 a~~~g~P~l~~P~ 80 (124)
+...++|.+....
T Consensus 103 ~~~~~~~~v~~~h 115 (335)
T cd03802 103 ARPLPVPVVTTLH 115 (335)
T ss_pred hcccCCCEEEEec
Confidence 7778888877544
No 405
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=27.15 E-value=95 Score=22.05 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhC-CCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHH-HhCCCe
Q psy10186 5 MRTLLVTAFSRT-GLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAI-HYGIPI 75 (124)
Q Consensus 5 ~~~~~~~~l~~~-~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~-~~g~P~ 75 (124)
.+.+.+..+.+. +..+++++|++-... ++ ....++..-.++.....+++|-|||...+.+.+ .+|.+.
T Consensus 10 ~~~~~~pyi~~~~~~~~VIk~gG~~~~~--~~-l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~ 79 (284)
T CHL00202 10 VLSEALPYIQKFRGRIMVIKYGGAAMKN--LI-LKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISP 79 (284)
T ss_pred HHHHHHHHHHHHcCCeEEEEEChHHhcC--cc-hHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCC
Confidence 445555555555 457888888865321 11 111344444444334567899999875444333 445443
No 406
>KOG3285|consensus
Probab=27.14 E-value=1.4e+02 Score=20.15 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=33.7
Q ss_pred ceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeEecC
Q psy10186 54 RLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSY 102 (124)
Q Consensus 54 d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~ 102 (124)
+.+=-||.+-.+.|-..+|.-.|..-+.-==...-.++.+.|+-+.+..
T Consensus 8 ~~isLkGSa~iV~EFf~y~iNSILyQRgiYPaEdF~~vkKYgLtllvs~ 56 (203)
T KOG3285|consen 8 NCISLKGSAQIVSEFFEYGINSILYQRGIYPAEDFVRVKKYGLTLLVSH 56 (203)
T ss_pred ceeEeechHHHHHHHHHhhhhHHHHhccCCcHHHhhHHHhcCceEEEec
Confidence 3445578889999999999999987553211122234567799888873
No 407
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=27.03 E-value=2e+02 Score=21.12 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=26.9
Q ss_pred HhhcCCCcceEEecCChhhHHHHHH-hCCCeeeecccccHHHHHHHHHHcCcee
Q psy10186 46 DVLAHPNCRLFISHGGVNSALEAIH-YGIPIIGVPFYGDQLSHVRHIVDLGAGV 98 (124)
Q Consensus 46 ~~l~~~~~d~~i~~gG~~t~~ea~~-~g~P~l~~P~~~~q~~~a~~~~~~g~g~ 98 (124)
++..+...|++||.||. ...+.+. +|-|...- +-..+-..+.+.|+.+
T Consensus 76 ~LIr~~~idvvVTTgg~-l~hDi~~~lg~~~~~G----~~~~dD~~Lr~~gi~R 124 (318)
T COG1899 76 DLIRNGLIDVVVTTGGN-LDHDIIKALGGPHYCG----SFEVDDVELREEGINR 124 (318)
T ss_pred HHHHcCCeEEEEecCCc-hhHHHHHHcCCCeecc----CcCCCHHHHHHhcccc
Confidence 34555889999999987 3333332 45466664 3333333444445443
No 408
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.75 E-value=2.5e+02 Score=20.22 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCC
Q psy10186 2 SDGMRTLLVTAFSRTGLTVLWRYEGD 27 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~i~~~g~~ 27 (124)
..+.+.++++.+.+.|+.-|+..|..
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~Gtt 48 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTT 48 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 45778889999999999888888875
No 409
>PHA02819 hypothetical protein; Provisional
Probab=26.68 E-value=57 Score=18.24 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=20.0
Q ss_pred ceeEecCCCCCHHHHHHHHHHHhcCCCC
Q psy10186 96 AGVELSYFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 96 ~g~~~~~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
.|+.+..++-+-+++.+.++..++|+++
T Consensus 9 FGvFmsS~DdDFnnFI~VVksVLtd~s~ 36 (71)
T PHA02819 9 FGVFMSSSDDDFNNFINVVKSVLNNENY 36 (71)
T ss_pred HHhhhCCchhHHHHHHHHHHHHHcCCCC
Confidence 4555654455677888888888888765
No 410
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.61 E-value=1.4e+02 Score=19.86 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=7.9
Q ss_pred HHhCCCeeeec
Q psy10186 69 IHYGIPIIGVP 79 (124)
Q Consensus 69 ~~~g~P~l~~P 79 (124)
...++|++.+=
T Consensus 67 ~~~~~PilGIC 77 (196)
T PRK13170 67 KACTQPVLGIC 77 (196)
T ss_pred HHcCCCEEEEC
Confidence 34688998873
No 411
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=26.52 E-value=1.5e+02 Score=20.30 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEee---ccChHHhhcCCCcceEEecCChhhHHHHHHhCCCeeeecccc
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRK---WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYG 82 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~---~~~~~~~l~~~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~ 82 (124)
+.-+.+++++.+..+.+...+.... ..+.+.+-+ |-+.++-|. . .+....+.|.+..|+|++.+- .+
T Consensus 14 L~Sv~~Aler~G~~~~vs~d~~~i~-~AD~liLPGVGaf~~am~~L~--~------~gl~~~i~~~~~~~kP~LGIC-lG 83 (204)
T COG0118 14 LRSVKKALERLGAEVVVSRDPEEIL-KADKLILPGVGAFGAAMANLR--E------RGLIEAIKEAVESGKPFLGIC-LG 83 (204)
T ss_pred HHHHHHHHHHcCCeeEEecCHHHHh-hCCEEEecCCCCHHHHHHHHH--h------cchHHHHHHHHhcCCCEEEEe-Hh
Confidence 3455667777777666655443322 122233221 112222221 1 133456777788899999973 35
Q ss_pred cHHHHHHHHHH
Q psy10186 83 DQLSHVRHIVD 93 (124)
Q Consensus 83 ~q~~~a~~~~~ 93 (124)
-|..-..-.|.
T Consensus 84 MQlLfe~SeE~ 94 (204)
T COG0118 84 MQLLFERSEEG 94 (204)
T ss_pred HHhhhhccccc
Confidence 56555554444
No 412
>PRK14072 6-phosphofructokinase; Provisional
Probab=26.42 E-value=97 Score=23.52 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=25.5
Q ss_pred CCCcceEEecCChhhHHHHHH-------hC--CCeeeeccc
Q psy10186 50 HPNCRLFISHGGVNSALEAIH-------YG--IPIIGVPFY 81 (124)
Q Consensus 50 ~~~~d~~i~~gG~~t~~ea~~-------~g--~P~l~~P~~ 81 (124)
.-..|.+|.=||-+|+.-|.. .| +|+|.+|-.
T Consensus 101 ~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkT 141 (416)
T PRK14072 101 AHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKT 141 (416)
T ss_pred HcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeec
Confidence 368899999999988865532 45 999999985
No 413
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=26.37 E-value=85 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=22.6
Q ss_pred CCcceEEecCChhhHHHHHHh--------CCCeeeecc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY--------GIPIIGVPF 80 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~--------g~P~l~~P~ 80 (124)
...|.+|.-||-||+.|.+.. ..|+-++|.
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 557899999999998877522 246777887
No 414
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=26.06 E-value=1.1e+02 Score=22.29 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhCC-CeEEEEEcCCCCC--------CCCC-cEEEee-ccC---hH------HhhcCCCcceEEecCChh
Q psy10186 4 GMRTLLVTAFSRTG-LTVLWRYEGDSIE--------NLPG-NVHIRK-WIP---QQ------DVLAHPNCRLFISHGGVN 63 (124)
Q Consensus 4 ~~~~~~~~~l~~~~-~~~i~~~g~~~~~--------~~~~-~v~~~~-~~~---~~------~~l~~~~~d~~i~~gG~~ 63 (124)
..++.+.+.+.+.+ .++++++++.... .... ++.+.+ ..+ .. +.+....+|.+|.=||.
T Consensus 9 g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG- 87 (337)
T cd08177 9 GALAALAAELERLGASRALVLTTPSLATKLAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGG- 87 (337)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcChHHHHHHHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc-
Confidence 34566777777777 4788787763200 0111 122222 111 11 12222578999988876
Q ss_pred hHHHH-----HHhCCCeeeecccc
Q psy10186 64 SALEA-----IHYGIPIIGVPFYG 82 (124)
Q Consensus 64 t~~ea-----~~~g~P~l~~P~~~ 82 (124)
++++. ...++|++.+|...
T Consensus 88 s~iD~aK~ia~~~~~p~i~IPTta 111 (337)
T cd08177 88 STIDLAKAIALRTGLPIIAIPTTL 111 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCc
Confidence 55554 33489999999853
No 415
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.05 E-value=2.2e+02 Score=19.33 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh-h----hHHHHHHhCCCeeee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV-N----SALEAIHYGIPIIGV 78 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~-~----t~~ea~~~g~P~l~~ 78 (124)
....+.+.+.+.|+.+++.....+... . ...+.. +.. ..+|++|..+.. . .+-++...|+|++.+
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~---~---~~~i~~--~~~-~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (282)
T cd06318 17 LTEAAKAHAKALGYELISTDAQGDLTK---Q---IADVED--LLT-RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV 86 (282)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHH---H---HHHHHH--HHH-cCCCEEEEecCCccchHHHHHHHHHCCCCEEEe
Confidence 344455566777888776432211110 0 011111 122 578887664432 1 234456678999876
No 416
>PRK07574 formate dehydrogenase; Provisional
Probab=25.94 E-value=2.5e+02 Score=21.16 Aligned_cols=53 Identities=6% Similarity=0.088 Sum_probs=30.3
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCC--CCCcEEEeeccChHHhhcCCCcceEEecCChh
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSIEN--LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVN 63 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~ 63 (124)
..+++.+..+|.+++..-......+ ...++ ..+.+..+++ +.||+++.|.-.+
T Consensus 205 ~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~--~~~~~l~ell--~~aDvV~l~lPlt 259 (385)
T PRK07574 205 LAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL--TYHVSFDSLV--SVCDVVTIHCPLH 259 (385)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchhhHhhcCc--eecCCHHHHh--hcCCEEEEcCCCC
Confidence 4567777778887754422111111 01122 2234677777 7899999998643
No 417
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=25.77 E-value=5e+02 Score=23.82 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC----CC--CCCcEEEeeccC-hHHhhc-------CCCcceEEecCCh------hh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI----EN--LPGNVHIRKWIP-QQDVLA-------HPNCRLFISHGGV------NS 64 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~----~~--~~~~v~~~~~~~-~~~~l~-------~~~~d~~i~~gG~------~t 64 (124)
+.+.+++.|.+.|++.++.+.+... .. ..+.++++.-.. +...++ ..+..++++++|. ..
T Consensus 303 ~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~a 382 (1655)
T PLN02980 303 WASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPA 382 (1655)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHH
Confidence 4567889999999988887766431 11 122355444332 111111 1456677888874 56
Q ss_pred HHHHHHhCCCeeee
Q psy10186 65 ALEAIHYGIPIIGV 78 (124)
Q Consensus 65 ~~ea~~~g~P~l~~ 78 (124)
+.||..-++|+|++
T Consensus 383 v~eA~~d~vPlLvI 396 (1655)
T PLN02980 383 VVEASQDFVPLLLL 396 (1655)
T ss_pred HHHHhhcCCCEEEE
Confidence 78999999999998
No 418
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=25.66 E-value=1.4e+02 Score=18.46 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCC------CC-CCCcEEEeeccChHHhhcCCCcceEEecCChh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSI------EN-LPGNVHIRKWIPQQDVLAHPNCRLFISHGGVN 63 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~------~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~ 63 (124)
.-..++.+|.+.+.+-|.+++++.. .. ...++.+..|-.....+ ..+|++|+-.+.+
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~--~~~DivI~aT~~~ 86 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEAL--QEADIVINATPSG 86 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHH--HTESEEEE-SSTT
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHH--hhCCeEEEecCCC
Confidence 3456788888889875566666431 11 23457777776666667 7899999987765
No 419
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.36 E-value=2.2e+02 Score=19.13 Aligned_cols=67 Identities=10% Similarity=0.172 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChh-----hHHHHHHhCCCeeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVN-----SALEAIHYGIPIIGV 78 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~-----t~~ea~~~g~P~l~~ 78 (124)
+..+.+-+++.+.|+++++.....+... ....+ ..++. ..+|++|..+... .+-++...|+|++.+
T Consensus 16 ~~~~~i~~~~~~~g~~~~i~~~~~~~~~------~~~~~--~~~~~-~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 16 ELANAMKEEAKKQKVNLIVSIANQDLNK------QLSDV--EDFIT-KKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITV 86 (267)
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCHHH------HHHHH--HHHHH-cCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEE
Confidence 3455556666778888876543221100 00111 11222 5788877755321 133445668899887
Q ss_pred c
Q psy10186 79 P 79 (124)
Q Consensus 79 P 79 (124)
-
T Consensus 87 ~ 87 (267)
T cd06322 87 D 87 (267)
T ss_pred c
Confidence 4
No 420
>PLN02884 6-phosphofructokinase
Probab=25.29 E-value=1.1e+02 Score=23.28 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCcceEEecCChhhHHHHHH-------hC--CCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIH-------YG--IPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~-------~g--~P~l~~P~~ 81 (124)
...|.+|.=||-+|+.-|.. .| +|+|.+|..
T Consensus 142 ~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkT 181 (411)
T PLN02884 142 RGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKT 181 (411)
T ss_pred cCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEecccc
Confidence 67899999999988865533 45 999999985
No 421
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.25 E-value=1.4e+02 Score=19.91 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=11.4
Q ss_pred HhCCCeeeecccccHHHHH
Q psy10186 70 HYGIPIIGVPFYGDQLSHV 88 (124)
Q Consensus 70 ~~g~P~l~~P~~~~q~~~a 88 (124)
..|+|++.+= .+-|..+.
T Consensus 71 ~~~~pvlGiC-~G~Q~l~~ 88 (201)
T PRK13152 71 VQKKPILGIC-LGMQLFLE 88 (201)
T ss_pred hCCCcEEEEC-HhHHHHhh
Confidence 4689999873 34454443
No 422
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=25.23 E-value=1.7e+02 Score=17.77 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=30.5
Q ss_pred CCCeeeeccccc-------HHHHHHHHHHcCceeEec--CCCCCHHHHHHHHHHHhcCCCC
Q psy10186 72 GIPIIGVPFYGD-------QLSHVRHIVDLGAGVELS--YFNITLESIAWATSIVLNNPRR 123 (124)
Q Consensus 72 g~P~l~~P~~~~-------q~~~a~~~~~~g~g~~~~--~~~~~~~~l~~~l~~ll~~~~~ 123 (124)
..|.+.+=+.++ .....+.+++.|+..... +.+.+.+++.+.|+++-.|++.
T Consensus 28 ~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V 88 (117)
T PF00763_consen 28 ITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSV 88 (117)
T ss_dssp ---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-
T ss_pred CCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCC
Confidence 357776645443 122345567778886543 5677999999999999888763
No 423
>PF10120 Aldolase_2: Putative aldolase; InterPro: IPR019293 This family of proteins have no known function. In many cases they represent a domain C-terminal to a phosphomethylpyrimidine kinase domain or a HTH DNA-binding domain.; PDB: 2PHP_A 2PB9_A.
Probab=25.14 E-value=82 Score=20.74 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHHhCCCeeee
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~g~P~l~~ 78 (124)
.++++++++.++.+.+.-...++.+.. .-....|.-...+-.+ ..-|++...||+| .-|++.+
T Consensus 92 ~~i~~~l~~~g~~v~~~dr~~ep~~~~-eg~tm~w~i~~a~~~~~~~PdvIyd~G~~G--------kEp~i~v 155 (170)
T PF10120_consen 92 EEIIEALEELGLKVSEFDRSEEPEEVK-EGGTMPWGIEEAFRELGEVPDVIYDRGGWG--------KEPMIYV 155 (170)
T ss_dssp HHHHHHHHCTTSEEEE--CCCS-CCCH-TT-HHHHHHHHHHHCCTS-ECEEEE--BCT--------B--EEEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCCcccc-cccchHHHHHHHHHhcCCCCeEEEECCCCC--------cCcEEEE
Confidence 567788888888886665544433221 1112334333332221 5578888888887 5677665
No 424
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=25.00 E-value=1.7e+02 Score=17.78 Aligned_cols=91 Identities=12% Similarity=0.156 Sum_probs=49.1
Q ss_pred HHHHHHHHhh-CCCeEEEEEcCCCC--C---------CCCCcEEEeeccChHHhhcCCCcceEEecCCh----hhHHHHH
Q psy10186 6 RTLLVTAFSR-TGLTVLWRYEGDSI--E---------NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV----NSALEAI 69 (124)
Q Consensus 6 ~~~~~~~l~~-~~~~~i~~~g~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~----~t~~ea~ 69 (124)
=..+++.+.+ .+.+++..+.++.. . ..+..+.+. -+..+++ ..+|++|.-... ..+-.++
T Consensus 13 G~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~--~~l~~~~--~~~DVvIDfT~p~~~~~~~~~~~ 88 (124)
T PF01113_consen 13 GRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT--DDLEELL--EEADVVIDFTNPDAVYDNLEYAL 88 (124)
T ss_dssp HHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB--S-HHHHT--TH-SEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc--hhHHHhc--ccCCEEEEcCChHHhHHHHHHHH
Confidence 3567777776 56788887766541 1 012223333 3566777 559998876643 3344668
Q ss_pred HhCCCeeeeccc--ccHHHHHHHHHHcCceeEec
Q psy10186 70 HYGIPIIGVPFY--GDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 70 ~~g~P~l~~P~~--~~q~~~a~~~~~~g~g~~~~ 101 (124)
.+|+|+++.... .+|....+.+.+. ++++..
T Consensus 89 ~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a 121 (124)
T PF01113_consen 89 KHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIA 121 (124)
T ss_dssp HHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-
T ss_pred hCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEe
Confidence 889999997543 2444444444444 555543
No 425
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=24.99 E-value=1.3e+02 Score=20.09 Aligned_cols=50 Identities=8% Similarity=0.016 Sum_probs=33.7
Q ss_pred Ccce-EEecCChhhHH----------------HHHHhCCCeeeecccc-c---HHHHHHHHHHcCceeEec
Q psy10186 52 NCRL-FISHGGVNSAL----------------EAIHYGIPIIGVPFYG-D---QLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 52 ~~d~-~i~~gG~~t~~----------------ea~~~g~P~l~~P~~~-~---q~~~a~~~~~~g~g~~~~ 101 (124)
.+|+ +|..+.+||+. -++..++|++++|... + -..|...+.+.|.-++-.
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P 148 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPP 148 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECC
Confidence 5676 46666655543 3567899999999742 2 246888888887765543
No 426
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=24.78 E-value=2.2e+02 Score=19.26 Aligned_cols=66 Identities=23% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChh----h-HHHHHHhCCCeeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVN----S-ALEAIHYGIPIIGV 78 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~----t-~~ea~~~g~P~l~~ 78 (124)
+.++.+.+++++.|+.+++....++... -...+. .+.. ..+|++|-.+... . +.++...|+|++.+
T Consensus 16 ~~~~~~~~~a~~~g~~~~~~~~~~~~~~------~~~~i~--~l~~-~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 16 AETKSIKDAAEKRGFDLKFADAQQKQEN------QISAIR--SFIA-QGVDVIILAPVVETGWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCCHHH------HHHHHH--HHHH-cCCCEEEEcCCccccchHHHHHHHHCCCCEEEE
Confidence 3455666677788998887543221110 011111 1222 5678776655321 1 23455678898887
No 427
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=24.72 E-value=1.8e+02 Score=17.85 Aligned_cols=73 Identities=16% Similarity=0.028 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhh-------------HHHHHHh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNS-------------ALEAIHY 71 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t-------------~~ea~~~ 71 (124)
.+..+++.+...++++.++............+.+....+..+.-. ...|+++-.||.+. +.+....
T Consensus 16 e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~-~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~ 94 (142)
T cd03132 16 ELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPS-VLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKH 94 (142)
T ss_pred HHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCCh-hhcCEEEECCCccCHHHHccChHHHHHHHHHHhc
Confidence 455667778777776655543222111122233222212222111 24688888887543 2244556
Q ss_pred CCCeeee
Q psy10186 72 GIPIIGV 78 (124)
Q Consensus 72 g~P~l~~ 78 (124)
|+|+..+
T Consensus 95 ~~~I~ai 101 (142)
T cd03132 95 GKPIGAV 101 (142)
T ss_pred CCeEEEc
Confidence 7777665
No 428
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=24.70 E-value=65 Score=22.80 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCcceEEecCChhhHH-------HHHHhCCCeeeec
Q psy10186 51 PNCRLFISHGGVNSAL-------EAIHYGIPIIGVP 79 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~-------ea~~~g~P~l~~P 79 (124)
.++|++|+.||.|-+. =|-+.|+|.+.-|
T Consensus 59 ~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~ 94 (255)
T COG1058 59 ERADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDE 94 (255)
T ss_pred hCCCEEEECCCcCCCccHhHHHHHHHHhCCCcccCH
Confidence 5599999999976432 2456788888753
No 429
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=24.62 E-value=2e+02 Score=18.53 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=28.1
Q ss_pred CcceEEecCC-----hhhHHHHHHhCCCeeeeccc--ccHHHHHHHHHHcCcee
Q psy10186 52 NCRLFISHGG-----VNSALEAIHYGIPIIGVPFY--GDQLSHVRHIVDLGAGV 98 (124)
Q Consensus 52 ~~d~~i~~gG-----~~t~~ea~~~g~P~l~~P~~--~~q~~~a~~~~~~g~g~ 98 (124)
..-+++++|- ..|..-|..++||.+.+-.. .+-....+++.+.++.+
T Consensus 65 DgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i~~~~~~~~~~v~~wl~~~~i~v 118 (145)
T PF12694_consen 65 DGTLIFTRGELTGGTALTVEFARKHGKPCLHIDLSIPEAAAAVAEWLREHNIRV 118 (145)
T ss_dssp SEEEEEESSS--HHHHHHHHHHHHTT--EEEETS-HHHHHHHHHHHHHHTT--E
T ss_pred CeEEEEecCCCCcHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHHHHCCceE
Confidence 3344677763 35666789999999999433 23455677888887774
No 430
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=24.59 E-value=1.4e+02 Score=20.46 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=43.9
Q ss_pred hHHhhcCCCcceE-EecCChhhHH---------------HHHHhCCCeeeecccc----c---HHHHHHHHHHcCceeEe
Q psy10186 44 QQDVLAHPNCRLF-ISHGGVNSAL---------------EAIHYGIPIIGVPFYG----D---QLSHVRHIVDLGAGVEL 100 (124)
Q Consensus 44 ~~~~l~~~~~d~~-i~~gG~~t~~---------------ea~~~g~P~l~~P~~~----~---q~~~a~~~~~~g~g~~~ 100 (124)
+.++. +.+|++ |..+.++|+. .+..+++|++++|... + -..|.+.+.+.|.-+ +
T Consensus 90 HI~La--~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~v-i 166 (209)
T PLN02496 90 HIELR--RWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISL-I 166 (209)
T ss_pred hhHhh--hhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEE-E
Confidence 44554 678885 5666554432 3444589999999742 2 234566677766544 3
Q ss_pred cCC-------------CCCHHHHHHHHHHHhcC
Q psy10186 101 SYF-------------NITLESIAWATSIVLNN 120 (124)
Q Consensus 101 ~~~-------------~~~~~~l~~~l~~ll~~ 120 (124)
.+. =.+.+++.+.+.+.+..
T Consensus 167 ~P~~g~lAcg~~G~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 167 PPVTKRLACGDYGNGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred CCCcCcccCCCcCCCCCCCHHHHHHHHHHHHhh
Confidence 331 02467777777776643
No 431
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=24.50 E-value=1.9e+02 Score=20.86 Aligned_cols=25 Identities=4% Similarity=0.007 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCC
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDS 28 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~ 28 (124)
+...++++.+.+.|...|.+-++..
T Consensus 138 ~~~~~~~~~l~~~G~~~i~vH~Rt~ 162 (309)
T PF01207_consen 138 EETIEFARILEDAGVSAITVHGRTR 162 (309)
T ss_dssp HHHHHHHHHHHHTT--EEEEECS-T
T ss_pred hHHHHHHHHhhhcccceEEEecCch
Confidence 4567788888888888888777654
No 432
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=24.42 E-value=2.7e+02 Score=19.96 Aligned_cols=98 Identities=12% Similarity=-0.011 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHhh--CCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChh------hHHHHHHh--
Q psy10186 2 SDGMRTLLVTAFSR--TGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVN------SALEAIHY-- 71 (124)
Q Consensus 2 ~~~~~~~~~~~l~~--~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~------t~~ea~~~-- 71 (124)
|.+...+.+++..+ .+.+|+++.+.+...... -+.+-+.....+....+|++..+++.. .+.+.+..
T Consensus 133 s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~---~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~ 209 (285)
T TIGR02320 133 SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGK---GMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHY 209 (285)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEecccccccC---CHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhC
Confidence 33444444554433 245666666544321100 012222332233336788877776533 23333332
Q ss_pred -CCCeeeecccccHHHHHHHHHHcCceeEecCC
Q psy10186 72 -GIPIIGVPFYGDQLSHVRHIVDLGAGVELSYF 103 (124)
Q Consensus 72 -g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~ 103 (124)
.+|++++|..... ...+.+.++|+.+++.+.
T Consensus 210 p~~pl~~~~~~~~~-~~~~eL~~lG~~~v~~~~ 241 (285)
T TIGR02320 210 PRTPLVIVPTSYYT-TPTDEFRDAGISVVIYAN 241 (285)
T ss_pred CCCCEEEecCCCCC-CCHHHHHHcCCCEEEEhH
Confidence 4688877632221 247888899998887643
No 433
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=24.31 E-value=3.1e+02 Score=20.63 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHH----hh--cCCCcceEEecCChh
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQD----VL--AHPNCRLFISHGGVN 63 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~----~l--~~~~~d~~i~~gG~~ 63 (124)
.-.++++.+...|.+++.+.|+.... .+..+...+.....+ ++ ....+|++|..+|..
T Consensus 213 ~g~~~a~~~~~~Ga~V~~~~g~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavs 276 (390)
T TIGR00521 213 MGLALAEAAYKRGADVTLITGPVSLL-TPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVA 276 (390)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCccC-CCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEccccc
Confidence 34678889999999998888765422 344444444433322 22 125789999999863
No 434
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=24.23 E-value=1.2e+02 Score=22.18 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=25.6
Q ss_pred CCCcceEEecCChhhHHHHHH---h------CCCeeeeccc
Q psy10186 50 HPNCRLFISHGGVNSALEAIH---Y------GIPIIGVPFY 81 (124)
Q Consensus 50 ~~~~d~~i~~gG~~t~~ea~~---~------g~P~l~~P~~ 81 (124)
....|.++.=||-+|+.-+.. . ++|++.+|..
T Consensus 90 ~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkT 130 (338)
T cd00363 90 KHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGT 130 (338)
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeec
Confidence 368899999999988766533 2 8999999985
No 435
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.21 E-value=1.5e+02 Score=16.76 Aligned_cols=43 Identities=28% Similarity=0.144 Sum_probs=27.5
Q ss_pred hCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHH
Q psy10186 71 YGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATS 115 (124)
Q Consensus 71 ~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~ 115 (124)
...|++++-...+.....+. .+.|+--.+. +.++.++|.++|+
T Consensus 70 ~~~~ii~~t~~~~~~~~~~~-~~~g~~~~l~-kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 PSIPIIVVTDEDDSDEVQEA-LRAGADDYLS-KPFSPEELRAAIN 112 (112)
T ss_dssp TTSEEEEEESSTSHHHHHHH-HHTTESEEEE-SSSSHHHHHHHHH
T ss_pred ccccEEEecCCCCHHHHHHH-HHCCCCEEEE-CCCCHHHHHHhhC
Confidence 57888888655554444444 4666665554 4568888888774
No 436
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=23.93 E-value=91 Score=21.96 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=26.3
Q ss_pred hCCCeeeecccccHHHHHHHHHHcCceeEec
Q psy10186 71 YGIPIIGVPFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 71 ~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
..-=+.+.|+..|-...|+++++.|+..++.
T Consensus 127 v~eGF~VlPY~~dD~v~arrLee~GcaavMP 157 (262)
T COG2022 127 VKEGFVVLPYTTDDPVLARRLEEAGCAAVMP 157 (262)
T ss_pred HhCCCEEeeccCCCHHHHHHHHhcCceEecc
Confidence 3455778899999999999999999998876
No 437
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=23.92 E-value=2.1e+02 Score=18.39 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=31.8
Q ss_pred HhCCCeeeeccccc--HHHHHHHHHHcCceeEecCCCCCHHHHHHHHH
Q psy10186 70 HYGIPIIGVPFYGD--QLSHVRHIVDLGAGVELSYFNITLESIAWATS 115 (124)
Q Consensus 70 ~~g~P~l~~P~~~~--q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~ 115 (124)
..|++++.+....+ .....+.+.+.+-|.....++.+.+.+..+++
T Consensus 130 ~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 130 ARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred hcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 55778777765432 34456677777778777777778888877664
No 438
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.86 E-value=2.4e+02 Score=19.32 Aligned_cols=66 Identities=18% Similarity=0.075 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh-h----hHHHHHHhCCCeeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV-N----SALEAIHYGIPIIGV 78 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~-~----t~~ea~~~g~P~l~~ 78 (124)
+.+..+.+++.+.|+.+++..+..+... ...++.. +.. .++|++|--+.. . .+..+...++|++.+
T Consensus 17 ~~~~gi~~~a~~~gy~~~~~~~~~~~~~------~~~~i~~--l~~-~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 17 GVGEGVREAAKAIGWNLRILDGRGSEAG------QAAALNQ--AIA-LKPDGIVLGGVDAAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHHHHHHcCcEEEEECCCCCHHH------HHHHHHH--HHH-cCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 3455556677788998877654322110 0111111 122 577877665532 1 123344568998887
No 439
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=23.83 E-value=1.6e+02 Score=20.84 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHcCceeEec
Q psy10186 82 GDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 82 ~~q~~~a~~~~~~g~g~~~~ 101 (124)
.|-..|++.++++|+|.++-
T Consensus 155 ~d~~~Wa~~~e~~GAGEIlL 174 (256)
T COG0107 155 LDAVEWAKEVEELGAGEILL 174 (256)
T ss_pred cCHHHHHHHHHHcCCceEEE
Confidence 46788999999999997765
No 440
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=23.72 E-value=3.8e+02 Score=21.35 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=46.4
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC-------C--CCCCcEEEeeccChHH--hh-------cCCCcceEEecCCh-----
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI-------E--NLPGNVHIRKWIPQQD--VL-------AHPNCRLFISHGGV----- 62 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~-------~--~~~~~v~~~~~~~~~~--~l-------~~~~~d~~i~~gG~----- 62 (124)
-+.+++.|.+.|++.++.+.++.. . +..++++++.- .++. .+ ...+..++++|.|-
T Consensus 22 ~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~ 100 (616)
T PRK07418 22 AYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNL 100 (616)
T ss_pred HHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 567889999999988887765431 1 11123554332 2211 11 11457778888874
Q ss_pred -hhHHHHHHhCCCeeee
Q psy10186 63 -NSALEAIHYGIPIIGV 78 (124)
Q Consensus 63 -~t~~ea~~~g~P~l~~ 78 (124)
+.+.+|..-++|+|++
T Consensus 101 l~gl~~A~~d~~Pvl~i 117 (616)
T PRK07418 101 VTGIATAQMDSVPMVVI 117 (616)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 5678999999999998
No 441
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=23.45 E-value=98 Score=22.04 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCCeeeecccccHHHHHHHHHHcCceeEec
Q psy10186 72 GIPIIGVPFYGDQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 72 g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~ 101 (124)
.-=+.++|+..+-+..|+++++.|+..++.
T Consensus 135 ~eGF~VlPY~~~D~v~a~rLed~Gc~aVMP 164 (267)
T CHL00162 135 KKGFTVLPYINADPMLAKHLEDIGCATVMP 164 (267)
T ss_pred HCCCEEeecCCCCHHHHHHHHHcCCeEEee
Confidence 344566777778888899999999887775
No 442
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.42 E-value=1.3e+02 Score=21.64 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=34.1
Q ss_pred CCcceEEecCChhhHH--HHHHhCCCeeeecccccHHHHHHH-HHHcCce
Q psy10186 51 PNCRLFISHGGVNSAL--EAIHYGIPIIGVPFYGDQLSHVRH-IVDLGAG 97 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~--ea~~~g~P~l~~P~~~~q~~~a~~-~~~~g~g 97 (124)
+.-.+.=--||||+++ -|-.+|+-++.+.+..+|..+++. +.+.|+.
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 3444443445665544 566679999999999999999887 6777887
No 443
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=23.19 E-value=2.4e+02 Score=18.83 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh---hhHHHHHHhCCCeeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV---NSALEAIHYGIPIIGV 78 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~---~t~~ea~~~g~P~l~~ 78 (124)
+.+..+.+++++.|+.++......+... .....+.+...++|++|.-+.. ..+..+...|+|++.+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 16 DVLQGISDVLEAAGYQLLLGNTGYSPER---------EEELLRTLLSRRPAGLILTGLEHTERTRQLLRAAGIPVVEI 84 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCchh---------HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhcCCCEEEE
Confidence 3445566677788888766543321110 0011111112567776654432 1223344667888765
No 444
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=23.14 E-value=2.5e+02 Score=19.05 Aligned_cols=51 Identities=6% Similarity=-0.061 Sum_probs=31.6
Q ss_pred cChHHhhcCCCcceEEecCChhh-HHHHHHhCCCeeeecccccHHHHHHHHHH
Q psy10186 42 IPQQDVLAHPNCRLFISHGGVNS-ALEAIHYGIPIIGVPFYGDQLSHVRHIVD 93 (124)
Q Consensus 42 ~~~~~~l~~~~~d~~i~~gG~~t-~~ea~~~g~P~l~~P~~~~q~~~a~~~~~ 93 (124)
.+.+.++. -+-|++|.-++... ..+-+....|++.++...+.....+.++.
T Consensus 56 ~n~E~i~~-l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~ 107 (256)
T cd01146 56 PNLEAIAA-LKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRL 107 (256)
T ss_pred CCHHHHHh-cCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHH
Confidence 34555665 78999998776543 66666666799888754233333344443
No 445
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=23.14 E-value=66 Score=23.65 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=18.3
Q ss_pred cceEEecCChhhHHHHHHhCCCe
Q psy10186 53 CRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
.-++|+|||...++-+...|.|.
T Consensus 314 ~vlvVtHg~~ir~ll~~~l~~~~ 336 (372)
T PRK07238 314 TVLVVSHVTPIKTLLRLALDAGP 336 (372)
T ss_pred eEEEEEChHHHHHHHHHHhCCCH
Confidence 45689999998888888887664
No 446
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=23.13 E-value=68 Score=19.53 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=21.0
Q ss_pred cceEEecCChhhHHHHHH----hCC----Ceeeeccc
Q psy10186 53 CRLFISHGGVNSALEAIH----YGI----PIIGVPFY 81 (124)
Q Consensus 53 ~d~~i~~gG~~t~~ea~~----~g~----P~l~~P~~ 81 (124)
.|.+|.-||-||+.+.+. .+. |+-++|.-
T Consensus 55 ~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp -SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred ccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCC
Confidence 489999999999998854 233 67777873
No 447
>PRK12474 hypothetical protein; Provisional
Probab=23.13 E-value=3.6e+02 Score=20.88 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=45.7
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CCC--CCcEEEeeccCh-HH-----hhc--CCCcceEEecCCh------hhH
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----ENL--PGNVHIRKWIPQ-QD-----VLA--HPNCRLFISHGGV------NSA 65 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~~--~~~v~~~~~~~~-~~-----~l~--~~~~d~~i~~gG~------~t~ 65 (124)
-+.+++.|.+.|++.++.+.++.. +.. .++++++.-... .. -++ ..+..+++.|.|- +.+
T Consensus 8 ~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl 87 (518)
T PRK12474 8 ADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL 87 (518)
T ss_pred HHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH
Confidence 467889999999999998776541 111 124554432211 11 111 1345667777764 356
Q ss_pred HHHHHhCCCeeeec
Q psy10186 66 LEAIHYGIPIIGVP 79 (124)
Q Consensus 66 ~ea~~~g~P~l~~P 79 (124)
.+|..-+.|+|++.
T Consensus 88 ~~A~~d~~Pvl~i~ 101 (518)
T PRK12474 88 HNARRAASPIVNIV 101 (518)
T ss_pred HHHhhcCCCEEEEe
Confidence 68999999999984
No 448
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=22.95 E-value=1.7e+02 Score=22.04 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHHHHhhC-CCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHH-HhCCCe
Q psy10186 6 RTLLVTAFSRT-GLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAI-HYGIPI 75 (124)
Q Consensus 6 ~~~~~~~l~~~-~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~-~~g~P~ 75 (124)
+.+.+..+.+. +..+|+++|++-... ++. ..++.....+.....+.+|-|||.-.+-+.+ ..|++.
T Consensus 5 ~~~~~~~i~~~~~~~~ViK~GG~~~~~--~~~--~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~ 72 (429)
T TIGR01890 5 FREAAPYINAHRGKTFVVGLGGELVEG--GNL--GNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTP 72 (429)
T ss_pred HhhhhHHHHHhCCCEEEEEEChhhccC--ccH--HHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCc
Confidence 34444455554 567888998875432 111 1344444444323457899999987666655 566665
No 449
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=22.84 E-value=1.2e+02 Score=23.50 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=23.8
Q ss_pred CCcceEEecCChhhHHHHHHh-----------CCCeeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAIHY-----------GIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~-----------g~P~l~~P~~ 81 (124)
...|.+|+=||-||+.|.+.. .+|+-++|..
T Consensus 167 ~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaG 208 (481)
T PLN02958 167 SKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAG 208 (481)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCc
Confidence 457899999999998887531 4677778873
No 450
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=22.82 E-value=1.2e+02 Score=19.02 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=8.4
Q ss_pred CCcceEEecCC
Q psy10186 51 PNCRLFISHGG 61 (124)
Q Consensus 51 ~~~d~~i~~gG 61 (124)
...+++++||.
T Consensus 77 ~g~~i~l~Hg~ 87 (158)
T TIGR00040 77 EGIDFGLVHGD 87 (158)
T ss_pred CCEEEEEEeCc
Confidence 45678899986
No 451
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=22.77 E-value=1.3e+02 Score=21.38 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHHhhC-CCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhhHHHHH-HhCCCe
Q psy10186 6 RTLLVTAFSRT-GLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAI-HYGIPI 75 (124)
Q Consensus 6 ~~~~~~~l~~~-~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t~~ea~-~~g~P~ 75 (124)
+.+.+..+.+. +..++++.|++-... +++ ..++..-..+.....+++|.|||.-.+-+.+ ..|++.
T Consensus 6 ~~~~~~yi~~~~~~~~VIKlGG~ai~~--~~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~ 73 (280)
T cd04237 6 FREAAPYINAHRGKTFVIAFGGEAVAH--PNF--DNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEP 73 (280)
T ss_pred HHHHhHHHHHhCCCEEEEEEChHHhcC--chH--HHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCc
Confidence 34444444443 457888888865432 222 1233333333223467899999975555443 455553
No 452
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=22.71 E-value=81 Score=17.82 Aligned_cols=22 Identities=9% Similarity=0.139 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHhhCCCeEEE
Q psy10186 1 MSDGMRTLLVTAFSRTGLTVLW 22 (124)
Q Consensus 1 l~~~~~~~~~~~l~~~~~~~i~ 22 (124)
++.+.+..++..|.+.|+.++=
T Consensus 36 ~~~e~id~i~~~L~~~gI~Vvd 57 (82)
T PF03979_consen 36 LDPEQIDEIYDTLEDEGIEVVD 57 (82)
T ss_dssp --HHHHHHHHHHHHTT----B-
T ss_pred CCHHHHHHHHHHHHHCCCEEec
Confidence 3578899999999999998865
No 453
>PRK06487 glycerate dehydrogenase; Provisional
Probab=22.68 E-value=2.5e+02 Score=20.31 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCCh
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGV 62 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~ 62 (124)
.++++.+..+|.+++..-... . +. ...+.+..+++ +.+|+++.|.-.
T Consensus 161 ~~vA~~l~~fgm~V~~~~~~~--~--~~---~~~~~~l~ell--~~sDiv~l~lPl 207 (317)
T PRK06487 161 GAVARLAEAFGMRVLIGQLPG--R--PA---RPDRLPLDELL--PQVDALTLHCPL 207 (317)
T ss_pred HHHHHHHhhCCCEEEEECCCC--C--cc---cccccCHHHHH--HhCCEEEECCCC
Confidence 456777777888876543211 1 11 12356778888 789999888743
No 454
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=22.61 E-value=1.3e+02 Score=23.33 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=19.6
Q ss_pred cChHHhhcCCCcceEEecCChhhHH--HHHHhCCC
Q psy10186 42 IPQQDVLAHPNCRLFISHGGVNSAL--EAIHYGIP 74 (124)
Q Consensus 42 ~~~~~~l~~~~~d~~i~~gG~~t~~--ea~~~g~P 74 (124)
.+..+++ ..+|++|+|.|..-++ +.+..=+|
T Consensus 301 ~~leell--~~ADIVI~atGt~~iI~~e~~~~MKp 333 (476)
T PTZ00075 301 VTLEDVV--ETADIFVTATGNKDIITLEHMRRMKN 333 (476)
T ss_pred ccHHHHH--hcCCEEEECCCcccccCHHHHhccCC
Confidence 4566777 7899999998753333 34433334
No 455
>KOG2802|consensus
Probab=22.61 E-value=43 Score=25.28 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=42.4
Q ss_pred EEEEcCCCCCCCCCcEEEeeccChHHhhcC-CCcceEEecCChhhHHHHHHhCCCeeeecccccHHHHHHHH
Q psy10186 21 LWRYEGDSIENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHI 91 (124)
Q Consensus 21 i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~gG~~t~~ea~~~g~P~l~~P~~~~q~~~a~~~ 91 (124)
+..+|=......|+-.+..+|.....+-.. ..+.+|.--+|. ++++|+--+.-|...+-..+|-.+
T Consensus 251 lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~G~Gl-----SiyhGv~gLlhpePi~~l~~ay~i 317 (503)
T KOG2802|consen 251 LLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCMGCGL-----SIYHGVMGLLHPEPIESLLWAYCI 317 (503)
T ss_pred HHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeeecccc-----hhhhccccccCCCCCcchHHHHHH
Confidence 333333333345666777888776543322 677777777777 688899888888876666665544
No 456
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=22.47 E-value=3.2e+02 Score=20.50 Aligned_cols=59 Identities=20% Similarity=0.022 Sum_probs=40.5
Q ss_pred hhHHHHHHhCCCeeeeccc---ccHHHHHHHHHHcCceeEecCC--CCCHHHHHHHHHHHhcCC
Q psy10186 63 NSALEAIHYGIPIIGVPFY---GDQLSHVRHIVDLGAGVELSYF--NITLESIAWATSIVLNNP 121 (124)
Q Consensus 63 ~t~~ea~~~g~P~l~~P~~---~~q~~~a~~~~~~g~g~~~~~~--~~~~~~l~~~l~~ll~~~ 121 (124)
-|..-|...|.+-++.=-. .-|..|..+++-+|+-++--.+ ..-.|.+.++++.+.++-
T Consensus 118 AtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~ 181 (396)
T COG0133 118 ATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNV 181 (396)
T ss_pred HHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhcc
Confidence 3555667778887764221 3489999999999988654322 223778889999887654
No 457
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.46 E-value=1.8e+02 Score=17.25 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEc
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYE 25 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g 25 (124)
.+.+.++++.+.+.|++++..-|
T Consensus 11 K~~~~~~a~~l~~~G~~i~AT~g 33 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPLFATGG 33 (112)
T ss_pred HHHHHHHHHHHHHCCCEEEECcH
Confidence 35667888888889988865444
No 458
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.45 E-value=2.5e+02 Score=18.82 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEE
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRY 24 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~ 24 (124)
+.+..+.+++.+.++.++...
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~ 36 (265)
T cd06285 16 TMYEGIEEAAAERGYSTFVAN 36 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 344566666777888876543
No 459
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=22.17 E-value=41 Score=19.47 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.2
Q ss_pred hHHHHHHhCCCeeeecccc
Q psy10186 64 SALEAIHYGIPIIGVPFYG 82 (124)
Q Consensus 64 t~~ea~~~g~P~l~~P~~~ 82 (124)
+..+.-+.|+|+++.|...
T Consensus 50 ~P~~G~Y~G~PViV~PI~~ 68 (84)
T PF09884_consen 50 TPIEGPYKGVPVIVAPIKD 68 (84)
T ss_pred ccCCcccCCeeEEEEEEEc
Confidence 4556678999999999864
No 460
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=22.02 E-value=80 Score=19.49 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=17.3
Q ss_pred CcceEEecCChhhHHHHHHhCCCe
Q psy10186 52 NCRLFISHGGVNSALEAIHYGIPI 75 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea~~~g~P~ 75 (124)
..-++|+|+|....+-+...+.|.
T Consensus 100 ~~iliV~H~~~i~~~~~~l~~~~~ 123 (153)
T cd07067 100 KNVLIVSHGGVLRALLAYLLGLSD 123 (153)
T ss_pred CeEEEEeChHHHHHHHHHHhCCCH
Confidence 455689999987777666666653
No 461
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=21.99 E-value=2.9e+02 Score=19.37 Aligned_cols=24 Identities=4% Similarity=-0.018 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy10186 3 DGMRTLLVTAFSRTGLTVLWRYEGDS 28 (124)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~i~~~g~~~ 28 (124)
.+.+..+++.+... .++|+.|+.+
T Consensus 85 ~~~~~~f~~~~~~~--evi~i~GNHD 108 (235)
T COG1407 85 KEEVREFLELLDER--EVIIIRGNHD 108 (235)
T ss_pred HHHHHHHHHHhccC--cEEEEeccCC
Confidence 34556666666555 5899999865
No 462
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.96 E-value=2.7e+02 Score=18.98 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCC-h----hhHHHHHHhCCCeeee
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGG-V----NSALEAIHYGIPIIGV 78 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG-~----~t~~ea~~~g~P~l~~ 78 (124)
...+-+++.+.|+.+++.....+... ....+.. +.. .++|++|-.+. . -.+.++...|+|++.+
T Consensus 18 ~~gi~~~~~~~G~~~~~~~~~~d~~~------~~~~i~~--~~~-~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 18 KQAADEAGKLLGVDVTWYGGALDAVK------QVAAIEN--MAS-QGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCHHH------HHHHHHH--HHH-cCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe
Confidence 34444556678999888754322110 0111111 122 56777665442 1 1234455678999886
No 463
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=21.95 E-value=4e+02 Score=20.97 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCC----CC---CCC----cEEEeeccC-hHHh-----hc--CCCcceEEecCCh----
Q psy10186 6 RTLLVTAFSRTGLTVLWRYEGDSI----EN---LPG----NVHIRKWIP-QQDV-----LA--HPNCRLFISHGGV---- 62 (124)
Q Consensus 6 ~~~~~~~l~~~~~~~i~~~g~~~~----~~---~~~----~v~~~~~~~-~~~~-----l~--~~~~d~~i~~gG~---- 62 (124)
-+.+++.|.+.|++.++-+.++.. .. ... .++++.--. +... ++ ..+..++++|.|-
T Consensus 10 a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N 89 (569)
T PRK08327 10 AELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDVGTAN 89 (569)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHH
Confidence 467889999999999887766531 11 111 134333211 1111 11 1445667777764
Q ss_pred --hhHHHHHHhCCCeeeec
Q psy10186 63 --NSALEAIHYGIPIIGVP 79 (124)
Q Consensus 63 --~t~~ea~~~g~P~l~~P 79 (124)
+.+.+|..-+.|+|++.
T Consensus 90 ~~~gla~A~~d~~Pvl~I~ 108 (569)
T PRK08327 90 ALGGVHNAARSRIPVLVFA 108 (569)
T ss_pred HHHHHHHHhhcCCCEEEEe
Confidence 56779999999999983
No 464
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.93 E-value=76 Score=17.04 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=14.4
Q ss_pred ChhhHHHHHHhCCCeeee
Q psy10186 61 GVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 61 G~~t~~ea~~~g~P~l~~ 78 (124)
.-.-+.|+...|.|++.+
T Consensus 13 ~K~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 13 RKDKIAESAVMGTPVVAL 30 (58)
T ss_pred chhHHHHHHhcCceeEee
Confidence 334688999999999875
No 465
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=21.90 E-value=3.6e+02 Score=20.37 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEee---------------c-cC--hHHhhcCCCcceEEecCChh--
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRK---------------W-IP--QQDVLAHPNCRLFISHGGVN-- 63 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~---------------~-~~--~~~~l~~~~~d~~i~~gG~~-- 63 (124)
..+.++++.|.+.|+++.+.+..........++.+.. + .. ....+...+.|++.+|....
T Consensus 78 ~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~ 157 (465)
T PLN02871 78 NRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIMV 157 (465)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchhH
Confidence 3567889999999999888875533211111111110 0 00 11223235789987776432
Q ss_pred --hHHHHHHhCCCeeee
Q psy10186 64 --SALEAIHYGIPIIGV 78 (124)
Q Consensus 64 --t~~ea~~~g~P~l~~ 78 (124)
...-+-..|+|+++.
T Consensus 158 ~~~~~~ak~~~ip~V~~ 174 (465)
T PLN02871 158 FGALFYAKLLCVPLVMS 174 (465)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 222345679999874
No 466
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=21.84 E-value=2e+02 Score=21.19 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=19.3
Q ss_pred HhhcCCCcceEEecCChh--hHHHHHHhCCCeee
Q psy10186 46 DVLAHPNCRLFISHGGVN--SALEAIHYGIPIIG 77 (124)
Q Consensus 46 ~~l~~~~~d~~i~~gG~~--t~~ea~~~g~P~l~ 77 (124)
++..+..+|++||.||.. -++++ .|.|...
T Consensus 68 ~Li~~g~VD~iVTTgani~hD~~~~--lg~~~y~ 99 (329)
T PRK00805 68 WLIRNRYVDVLVSTGANIFHDIHEA--LGFKHYK 99 (329)
T ss_pred HHHHcCCeeEEEeCCCchHHHHHHH--cCCCeec
Confidence 345568899999999863 23333 4456555
No 467
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.81 E-value=81 Score=22.66 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=23.6
Q ss_pred CCcceEEecCChhhHHHHH----HhCCC-eeeeccc
Q psy10186 51 PNCRLFISHGGVNSALEAI----HYGIP-IIGVPFY 81 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~----~~g~P-~l~~P~~ 81 (124)
...|.+|.-||-||+.|.+ ..+.| +=++|..
T Consensus 57 ~~~D~via~GGDGTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 57 EGYDTVIAAGGDGTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred cCCCEEEEecCcchHHHHHHHHhcCCCCceEEecCC
Confidence 4789999999999999874 34556 4466773
No 468
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=21.79 E-value=1.6e+02 Score=19.91 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=19.9
Q ss_pred CCcceEEecCChhhHH--------------HHHHhCCCeeee
Q psy10186 51 PNCRLFISHGGVNSAL--------------EAIHYGIPIIGV 78 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~--------------ea~~~g~P~l~~ 78 (124)
..+|.+|-.||-.|++ +.+..|+|+..-
T Consensus 37 ~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GT 78 (194)
T COG0311 37 EGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGT 78 (194)
T ss_pred ccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEe
Confidence 5688888888865544 556778888763
No 469
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.76 E-value=1.6e+02 Score=19.92 Aligned_cols=13 Identities=23% Similarity=0.628 Sum_probs=9.2
Q ss_pred HHHHhCCCeeeec
Q psy10186 67 EAIHYGIPIIGVP 79 (124)
Q Consensus 67 ea~~~g~P~l~~P 79 (124)
+....++|++.+=
T Consensus 67 ~~~~~~~pilGiC 79 (210)
T PRK14004 67 KHVESGKPLFGIC 79 (210)
T ss_pred HHHHcCCCEEEEC
Confidence 3456789988873
No 470
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=21.72 E-value=2.3e+02 Score=20.04 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=16.5
Q ss_pred CCcceEEecCCh--hhHHHHHH--hCCCeeee
Q psy10186 51 PNCRLFISHGGV--NSALEAIH--YGIPIIGV 78 (124)
Q Consensus 51 ~~~d~~i~~gG~--~t~~ea~~--~g~P~l~~ 78 (124)
..+|++|-.++. ...++.+. .|+|++.+
T Consensus 114 ~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~ 145 (341)
T PRK10703 114 KRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM 145 (341)
T ss_pred cCCCEEEEecCCCCHHHHHHHHhcCCCCEEEE
Confidence 567887765542 12233333 58898886
No 471
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=21.64 E-value=2.1e+02 Score=20.10 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=27.0
Q ss_pred CCcceEEecCChhhHHHHHHh-----CCCeeeecccccHHHHHHHHHHcCce
Q psy10186 51 PNCRLFISHGGVNSALEAIHY-----GIPIIGVPFYGDQLSHVRHIVDLGAG 97 (124)
Q Consensus 51 ~~~d~~i~~gG~~t~~ea~~~-----g~P~l~~P~~~~q~~~a~~~~~~g~g 97 (124)
+.-++++.+.|.+|.-++.+. ..++++|....+-+.-...+.+.|+-
T Consensus 112 p~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~fHm~RA~~ia~~~Gi~ 163 (239)
T PRK10834 112 DPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQ 163 (239)
T ss_pred CHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHcCCc
Confidence 677889999999876655433 23566663333333333333445654
No 472
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=21.47 E-value=3.2e+02 Score=19.72 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhCCCe
Q psy10186 5 MRTLLVTAFSRTGLT 19 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~ 19 (124)
.++...+.|++.|++
T Consensus 18 ~~~~~i~~L~~~G~~ 32 (305)
T PRK11253 18 AALRGVQRLTDAGHQ 32 (305)
T ss_pred HHHHHHHHHHhCCCE
Confidence 344444444444444
No 473
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.41 E-value=2.7e+02 Score=18.76 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChh---hHHHH-HHhCCCeeee
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVN---SALEA-IHYGIPIIGV 78 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~---t~~ea-~~~g~P~l~~ 78 (124)
++++.+.+.+.+.|+.+++.....+.... ....+.+....+|++|..++.. .+.+. ...++|++.+
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~~~~~~---------~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i 85 (269)
T cd06281 16 QLFSGAEDRLRAAGYSLLIANSLNDPERE---------LEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLL 85 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHH---------HHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEE
Confidence 45566667777888888766433221100 0111112224677766554421 12333 3457888776
No 474
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=21.31 E-value=3.2e+02 Score=19.67 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCC
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGG 61 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG 61 (124)
.++++.+..+|.+++..- +..... ... ..+.+..+++ +.||+++.|.-
T Consensus 158 ~~vA~~~~~fgm~V~~~d-~~~~~~-~~~---~~~~~l~ell--~~sDvv~lh~P 205 (311)
T PRK08410 158 KRVAKIAQAFGAKVVYYS-TSGKNK-NEE---YERVSLEELL--KTSDIISIHAP 205 (311)
T ss_pred HHHHHHHhhcCCEEEEEC-CCcccc-ccC---ceeecHHHHh--hcCCEEEEeCC
Confidence 456777777888876543 211110 111 2355788888 78999888873
No 475
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=21.20 E-value=2.1e+02 Score=20.98 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=27.1
Q ss_pred HhhcCCCcceEEecCChh--hHHHHHHhCCCeeeecccccHHHHHHHHHHcCceeE
Q psy10186 46 DVLAHPNCRLFISHGGVN--SALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVE 99 (124)
Q Consensus 46 ~~l~~~~~d~~i~~gG~~--t~~ea~~~g~P~l~~P~~~~q~~~a~~~~~~g~g~~ 99 (124)
++..+..+|++||.||.. -++++ .|.|.... +...+-..+.+.|+-++
T Consensus 79 ~Li~~~~VD~iVtTganiehD~~~~--lg~~~y~G----~~~~dd~~Lr~~ginRI 128 (316)
T PRK02301 79 DLIRDGHIDVLVTTGANLTHDVIEA--IGGHHHHG----TAHAHDEELRDEGIDRI 128 (316)
T ss_pred HHHHcCCeeEEEcCCCchHHHHHHH--cCCCeecc----CCCCCHHHHHHcCCCcc
Confidence 355568899999999863 23333 34455553 33334444555554443
No 476
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=21.10 E-value=2.8e+02 Score=20.46 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=20.2
Q ss_pred CCcc---eEEecCChhhHHHHH-------HhCCCeeeeccc
Q psy10186 51 PNCR---LFISHGGVNSALEAI-------HYGIPIIGVPFY 81 (124)
Q Consensus 51 ~~~d---~~i~~gG~~t~~ea~-------~~g~P~l~~P~~ 81 (124)
..+| ++|.=||. +++... ..|+|.+.+|..
T Consensus 80 ~~~dr~~~IIAvGGG-sv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 80 LGATRRSVIVALGGG-VVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred cCCCCCcEEEEECCc-HHHHHHHHHHHHhccCCCEEEecCc
Confidence 4565 88887775 344331 248999999984
No 477
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=21.09 E-value=45 Score=16.85 Aligned_cols=19 Identities=37% Similarity=0.742 Sum_probs=15.5
Q ss_pred CCCcEEEeeccChHHhhcC
Q psy10186 32 LPGNVHIRKWIPQQDVLAH 50 (124)
Q Consensus 32 ~~~~v~~~~~~~~~~~l~~ 50 (124)
.+..+....|.|.+++++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~ 28 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIAL 28 (47)
T ss_pred CCCcEEEEEECCCCCEEEE
Confidence 4566889999999998864
No 478
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=20.89 E-value=1.5e+02 Score=24.63 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=0.0
Q ss_pred CcceEEecCChhhHHHHHH----------hCCCeeeeccccc
Q psy10186 52 NCRLFISHGGVNSALEAIH----------YGIPIIGVPFYGD 83 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea~~----------~g~P~l~~P~~~~ 83 (124)
..|.+|.=||.+|+.-+.. .++|++.+|-.-|
T Consensus 478 ~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTID 519 (762)
T cd00764 478 GIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVS 519 (762)
T ss_pred CCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEeccccc
No 479
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=20.88 E-value=1e+02 Score=21.89 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhCCCeE
Q psy10186 5 MRTLLVTAFSRTGLTV 20 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~ 20 (124)
.++.-.+.|++.|+++
T Consensus 15 ~l~~~~~~L~~~G~~v 30 (284)
T PF02016_consen 15 RLERGIKRLESWGFKV 30 (284)
T ss_dssp HHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHhCCCEE
Confidence 3444444455444443
No 480
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=20.82 E-value=1.4e+02 Score=21.79 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=22.1
Q ss_pred CcceEEecCChhhHHHH-----HHhCCCeeeeccc
Q psy10186 52 NCRLFISHGGVNSALEA-----IHYGIPIIGVPFY 81 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea-----~~~g~P~l~~P~~ 81 (124)
++|.+|.=||. +++.+ ...++|++.+|..
T Consensus 80 ~~d~IIaIGGG-s~~D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGSG-TINDITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECCc-HHHHHHHHHHHhcCCCEEEecCc
Confidence 79999988886 44443 4458999999985
No 481
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=20.77 E-value=2.8e+02 Score=20.31 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=29.8
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecC
Q psy10186 7 TLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHG 60 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~g 60 (124)
..+++.+..+|.+++..-...... ...-..........++| +.+|++..|.
T Consensus 155 ~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL--~~sDiv~lh~ 205 (324)
T COG0111 155 RAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELL--AEADILTLHL 205 (324)
T ss_pred HHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHH--hhCCEEEEcC
Confidence 456667777788876554312111 11112233444678888 7899998887
No 482
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=20.69 E-value=2.1e+02 Score=21.18 Aligned_cols=27 Identities=19% Similarity=0.083 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHhhCC-CeEEEEEcCCC
Q psy10186 2 SDGMRTLLVTAFSRTG-LTVLWRYEGDS 28 (124)
Q Consensus 2 ~~~~~~~~~~~l~~~~-~~~i~~~g~~~ 28 (124)
.++..+.++++++.+| .+++++.|.+.
T Consensus 198 ~p~~~~~~A~~l~~LG~~ralvV~G~~G 225 (338)
T COG0547 198 HPELVELLAEALRLLGVERALVVHGLEG 225 (338)
T ss_pred CHHHHHHHHHHHHHhCcceEEEEECCCC
Confidence 4678899999999999 58988888643
No 483
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=20.66 E-value=69 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=10.8
Q ss_pred CCcceEEecCChh
Q psy10186 51 PNCRLFISHGGVN 63 (124)
Q Consensus 51 ~~~d~~i~~gG~~ 63 (124)
..+|++|+.||.+
T Consensus 62 ~~~DlVIttGGtg 74 (163)
T TIGR02667 62 PDVQVILITGGTG 74 (163)
T ss_pred CCCCEEEECCCcC
Confidence 4699999999863
No 484
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=20.56 E-value=2.7e+02 Score=19.52 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=35.0
Q ss_pred hCCCeeeecccccHHHHHHHHHHcCceeEecCCCCCHHHHHHHHHHHhcCCC
Q psy10186 71 YGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122 (124)
Q Consensus 71 ~g~P~l~~P~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~l~~ll~~~~ 122 (124)
.+++++++ -...++.+.+.|...+.-.++-+.+.|.+++..+++.|+
T Consensus 218 ~~~~~v~i-----s~rtA~~a~~~G~~~v~vA~~~~~~~l~~a~~~~~~~~~ 264 (266)
T PRK08811 218 QQRPVVAS-----SDRLLDAAHAAGFIHVMRAAGPLPAQLAAAAAAIMTPPR 264 (266)
T ss_pred hCCCEEEe-----CHHHHHHHHHcCCCceeeCCCCCHHHHHHHHHhhcCCCC
Confidence 46666665 235677778888776666667789999999999998553
No 485
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=20.53 E-value=2.5e+02 Score=21.27 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=20.5
Q ss_pred HhhcCCCcceEEecCChhhHHHHHHh-CCCeeee
Q psy10186 46 DVLAHPNCRLFISHGGVNSALEAIHY-GIPIIGV 78 (124)
Q Consensus 46 ~~l~~~~~d~~i~~gG~~t~~ea~~~-g~P~l~~ 78 (124)
+++.+..+|++||.||.. ..+...+ |.|...-
T Consensus 74 ~LIr~g~VD~IVTTGAnl-~hD~~~alg~~~y~G 106 (384)
T PRK00770 74 PLIEAGFIDWIISTGANL-YHDLHYALGLPLFAG 106 (384)
T ss_pred HHHHcCCccEEEcCCccH-HHHHHHHhCCCcccC
Confidence 445567899999999862 3334333 5666663
No 486
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=20.37 E-value=1.3e+02 Score=22.44 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=25.0
Q ss_pred CcceEEecCChhhHHHHHHhCCCeeee
Q psy10186 52 NCRLFISHGGVNSALEAIHYGIPIIGV 78 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea~~~g~P~l~~ 78 (124)
+-|+++.-||+-.+.-|...|+|.+++
T Consensus 93 ~p~~v~~~Gg~v~~~aA~~~~~p~~~~ 119 (396)
T TIGR03492 93 KGDLIVAVGDIVPLLFAWLSGKPYAFV 119 (396)
T ss_pred cCCEEEEECcHHHHHHHHHcCCCceEE
Confidence 679999999999999999999999994
No 487
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=20.27 E-value=1.6e+02 Score=21.31 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred CcceEEecCChhhHHHH-----HHhCCCeeeeccc
Q psy10186 52 NCRLFISHGGVNSALEA-----IHYGIPIIGVPFY 81 (124)
Q Consensus 52 ~~d~~i~~gG~~t~~ea-----~~~g~P~l~~P~~ 81 (124)
++|.+|.=||. +++.. ...|+|++.+|..
T Consensus 75 ~~d~iIaiGGG-sv~D~aK~vA~~~~~p~i~vPTt 108 (331)
T cd08174 75 NVDAVVGIGGG-KVIDVAKYAAFLRGIPLSVPTTN 108 (331)
T ss_pred CCCEEEEeCCc-HHHHHHHHHHhhcCCCEEEecCc
Confidence 58999977775 55543 3469999999984
No 488
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=20.24 E-value=3.1e+02 Score=19.06 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=51.6
Q ss_pred HHHHHHHhhC-CCeEEEEEcCCCCCC-CCCcEEEeeccChHHhhcCCCcceEEecCC----hhhHHHHHHhCCCeeeecc
Q psy10186 7 TLLVTAFSRT-GLTVLWRYEGDSIEN-LPGNVHIRKWIPQQDVLAHPNCRLFISHGG----VNSALEAIHYGIPIIGVPF 80 (124)
Q Consensus 7 ~~~~~~l~~~-~~~~i~~~g~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~P~ 80 (124)
..+++.+.+. +..++.++..+.... .....-+..+-+..+++ ..+|++|.=.- .-.+..++..|+|+++-|.
T Consensus 15 ~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll--~~~DvVid~t~p~~~~~~~~~al~~G~~vvigtt 92 (257)
T PRK00048 15 RELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVL--ADADVLIDFTTPEATLENLEFALEHGKPLVIGTT 92 (257)
T ss_pred HHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhc--cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3455666554 578888776543111 00111122233455556 56898873332 3445578999999999876
Q ss_pred ccc--HHHHHHHHHHcCceeEecCC
Q psy10186 81 YGD--QLSHVRHIVDLGAGVELSYF 103 (124)
Q Consensus 81 ~~~--q~~~a~~~~~~g~g~~~~~~ 103 (124)
... |......+ ..+.++.+.++
T Consensus 93 G~s~~~~~~l~~a-a~~~~v~~s~n 116 (257)
T PRK00048 93 GFTEEQLAELEEA-AKKIPVVIAPN 116 (257)
T ss_pred CCCHHHHHHHHHH-hcCCCEEEECc
Confidence 433 33223332 36777766643
No 489
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=20.23 E-value=2.7e+02 Score=18.38 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=28.8
Q ss_pred cChHHhhcCCCcceEEecCCh---hhHHHHHHhCCCeeeecccc
Q psy10186 42 IPQQDVLAHPNCRLFISHGGV---NSALEAIHYGIPIIGVPFYG 82 (124)
Q Consensus 42 ~~~~~~l~~~~~d~~i~~gG~---~t~~ea~~~g~P~l~~P~~~ 82 (124)
.+.+.++. -+-|++|...+. ....+....|.|++.+....
T Consensus 51 ~~~E~i~~-l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 51 PNLEAILA-LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp B-HHHHHH-T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred ccHHHHHh-CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 34555665 689999987776 77888899999999986653
No 490
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=20.22 E-value=2e+02 Score=17.06 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEEc
Q psy10186 4 GMRTLLVTAFSRTGLTVLWRYE 25 (124)
Q Consensus 4 ~~~~~~~~~l~~~~~~~i~~~g 25 (124)
+.+.++++.|.+.|+++...-|
T Consensus 13 ~~~~~~a~~l~~~G~~i~aT~g 34 (116)
T cd01423 13 PELLPTAQKLSKLGYKLYATEG 34 (116)
T ss_pred hhHHHHHHHHHHCCCEEEEccH
Confidence 4567888899999999865444
No 491
>PRK09982 universal stress protein UspD; Provisional
Probab=20.19 E-value=1.8e+02 Score=17.84 Aligned_cols=7 Identities=29% Similarity=0.245 Sum_probs=3.5
Q ss_pred CeEEEEE
Q psy10186 18 LTVLWRY 24 (124)
Q Consensus 18 ~~~i~~~ 24 (124)
..++++.
T Consensus 34 l~llhV~ 40 (142)
T PRK09982 34 LTLIHID 40 (142)
T ss_pred EEEEEEc
Confidence 4555554
No 492
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=20.18 E-value=3.3e+02 Score=19.31 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=54.0
Q ss_pred HHHHHHhhCC--CeEEEEEcCCCCC--CCCCcEEE-eeccChHHhhcCCCcceEEecCC----hhhHHHHHHhCCCeeee
Q psy10186 8 LLVTAFSRTG--LTVLWRYEGDSIE--NLPGNVHI-RKWIPQQDVLAHPNCRLFISHGG----VNSALEAIHYGIPIIGV 78 (124)
Q Consensus 8 ~~~~~l~~~~--~~~i~~~g~~~~~--~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~gG----~~t~~ea~~~g~P~l~~ 78 (124)
..+.++.+.+ ..++.++..+... .....+-+ ..|.+..+++..+..|+++-..- .-.+..|+..||++++=
T Consensus 18 ~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~E 97 (342)
T COG0673 18 AHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCE 97 (342)
T ss_pred HhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEc
Confidence 3556666665 3666666555311 11111111 45667888887777888643332 35678999999999995
Q ss_pred -cccc---cHHHHHHHHHHcCceeEec
Q psy10186 79 -PFYG---DQLSHVRHIVDLGAGVELS 101 (124)
Q Consensus 79 -P~~~---~q~~~a~~~~~~g~g~~~~ 101 (124)
|... |-....+..++.|.-+.+.
T Consensus 98 KPla~t~~ea~~l~~~a~~~~~~l~v~ 124 (342)
T COG0673 98 KPLALTLEEAEELVELARKAGVKLMVG 124 (342)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 7653 2333444445555554444
No 493
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.16 E-value=1.1e+02 Score=16.48 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=11.8
Q ss_pred HHHHHHHhhCCCeEEE
Q psy10186 7 TLLVTAFSRTGLTVLW 22 (124)
Q Consensus 7 ~~~~~~l~~~~~~~i~ 22 (124)
-+++..|.+.|++|+-
T Consensus 13 lE~A~~La~~GIRFVp 28 (61)
T PF07131_consen 13 LEMAHSLAHIGIRFVP 28 (61)
T ss_pred HHHHHHHHHcCceeec
Confidence 4566778888888874
No 494
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=20.11 E-value=1.2e+02 Score=19.44 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=17.2
Q ss_pred eEEecCChhhHHH--------HHHhCCCeeeecc
Q psy10186 55 LFISHGGVNSALE--------AIHYGIPIIGVPF 80 (124)
Q Consensus 55 ~~i~~gG~~t~~e--------a~~~g~P~l~~P~ 80 (124)
+++|..+.....+ |..+|+|++++|-
T Consensus 31 lV~tka~g~AAQsGIp~~~kla~k~G~~vlvf~d 64 (147)
T COG4080 31 LVLTKAKGSAAQSGIPEVLKLAFKLGKPVLVFPD 64 (147)
T ss_pred EEEEecccHhhhhccHHHHHHHHHhCCcEEEehh
Confidence 4677665443333 5778999999854
No 495
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=20.04 E-value=1.1e+02 Score=21.73 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.6
Q ss_pred hhHHHHHHhCCCeeeecc
Q psy10186 63 NSALEAIHYGIPIIGVPF 80 (124)
Q Consensus 63 ~t~~ea~~~g~P~l~~P~ 80 (124)
+..+||..+|+|.|.+..
T Consensus 116 gAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 116 AAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHHHHHcCCCeEEEEc
Confidence 567799999999999865
No 496
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.01 E-value=2.9e+02 Score=18.57 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCCCCCcEEEeeccChHHhhcCCCcceEEecCChhh--HHHHHHhCCCeeee
Q psy10186 5 MRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNS--ALEAIHYGIPIIGV 78 (124)
Q Consensus 5 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~gG~~t--~~ea~~~g~P~l~~ 78 (124)
.+..+-+++.+.|+.++......... . .......+...++|++|-.+.... +.++...|+|++.+
T Consensus 20 ~~~~i~~~~~~~g~~~~~~~~~~~~~---~------~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~ipvV~~ 86 (268)
T cd06277 20 IYRAIEEEAKKYGYNLILKFVSDEDE---E------EFELPSFLEDGKVDGIILLGGISTEYIKEIKELGIPFVLV 86 (268)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChH---H------HHHHHHHHHHCCCCEEEEeCCCChHHHHHHhhcCCCEEEE
Confidence 34455556667788877665432110 0 001111111157888776553222 34455678888887
Done!