RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10186
(124 letters)
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 113 bits (285), Expect = 1e-30
Identities = 42/113 (37%), Positives = 68/113 (60%)
Query: 9 LVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEA 68
+ +A ++ VLWR++G L N + KW+PQ D+L HP R F++H G N EA
Sbjct: 298 IASALAQIPQKVLWRFDGTKPSTLGRNTRLVKWLPQNDLLGHPKTRAFVTHAGSNGVYEA 357
Query: 69 IHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121
I +G+P++G+P +GDQ+ + +H+ GA V L+ +T E + A V+N+P
Sbjct: 358 ICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSEDLLNALKTVINDP 410
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 110 bits (278), Expect = 1e-29
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 1 MSDGMRTLLVTAFSRTGLTVLWRYEGD-SIENLPGNVHIRKWIPQQDVLAHPNCRLFISH 59
M + +L+ F + VLW+Y+G+ NLP NV +KW PQ+ VL H N + F++
Sbjct: 312 MDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQ 371
Query: 60 GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLN 119
GGV S EAI +P++G+P GDQ + V+LG G L ++ + A V+
Sbjct: 372 GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIE 431
Query: 120 NPR 122
NP+
Sbjct: 432 NPK 434
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 84.3 bits (209), Expect = 2e-20
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 27 DSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLS 86
+ LP NV +R+W+PQ ++L + FI+HGG+NS +EA+ G+P++ VP DQ
Sbjct: 268 ADLGELPPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPM 325
Query: 87 HVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
R I +LG G L +T E + A VL++PR
Sbjct: 326 TARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPR 361
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 79.7 bits (197), Expect = 1e-18
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 26 GDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQL 85
G E+LP NV + ++P +L P C + HGG + A+ G+P + VPF+GDQ
Sbjct: 280 GLGAEDLPDNVRVVDFVPHDWLL--PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQP 337
Query: 86 SHVRHIVDLGAGVELSYFNITLESIAWA 113
+ +LGAG L +T E +A A
Sbjct: 338 FWAARVAELGAGPALDPRELTAERLAAA 365
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 78.6 bits (194), Expect = 3e-18
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 27 DSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLS 86
D++ N+P NV + ++PQ ++L I HGG + EA++ G+P++ +P DQ
Sbjct: 277 DTLVNVPDNVIVADYVPQLELLPR--ADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPL 334
Query: 87 HVRHIVDLGAGVELSYFNITLESIAWATSIVLNNP 121
+ + +LGAG+ L + +T E + A + VL +
Sbjct: 335 NAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 64.0 bits (156), Expect = 4e-13
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 30 ENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVR 89
E I +W PQ+ VLAHP+ F++H G NS +EA+ G+P++ P +GDQ++
Sbjct: 333 EKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAV 392
Query: 90 HIVD-LGAGVELS 101
++VD GV L
Sbjct: 393 YLVDVFKTGVRLC 405
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 63.9 bits (155), Expect = 5e-13
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 29 IENLP--------GNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPF 80
IE+LP G +I KW PQ++VL+HP F SH G NS LE+I G+P+I PF
Sbjct: 311 IESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPF 370
Query: 81 YGDQLSHVRHI 91
DQ + R++
Sbjct: 371 SSDQKVNARYL 381
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 55.2 bits (133), Expect = 4e-10
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVE 99
W PQ VLA P F++H G NS LE++ +G+P+ P Y +Q + +V+ LG VE
Sbjct: 349 WAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVE 408
Query: 100 L 100
+
Sbjct: 409 I 409
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 54.7 bits (132), Expect = 6e-10
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 39 RKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQ-LSHVRHIVDLGAG 97
W PQ+++LAH F++H G NS LE++ +G+P+ P Y +Q L+ + D+G
Sbjct: 344 PTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVA 403
Query: 98 VEL 100
V +
Sbjct: 404 VAM 406
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 54.0 bits (130), Expect = 1e-09
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGD-QLSHVRHIVDLGAGVE 99
W PQ ++LAH F+SH G NS LE++ +G+PI P Y + QL+ + +LG VE
Sbjct: 347 WAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVE 406
Query: 100 L 100
L
Sbjct: 407 L 407
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 52.0 bits (124), Expect = 8e-09
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 9 LVTAFSRTGLTVLW----RYEGDSIENL-----PGNVHIRKWIPQQDVLAHPNCRLFISH 59
+ A G+ LW + + +++ L G + +W PQ+ +L+H F++H
Sbjct: 290 IAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTH 349
Query: 60 GGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDL-GAGVEL 100
G NS +E + G+P++ P + DQ R +VD+ G GV +
Sbjct: 350 CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRM 391
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 50.8 bits (122), Expect = 2e-08
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD 93
W Q VL H + F +H G NS LEA+ G+P++ P + DQ + + IV+
Sbjct: 330 WCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVE 382
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 49.6 bits (118), Expect = 4e-08
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDL-GA 96
+ KW PQ VL++ F++H G NS +E + G+P++ +P + DQ + ++I D+
Sbjct: 321 VLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKV 380
Query: 97 GVEL 100
GV +
Sbjct: 381 GVRV 384
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 49.7 bits (118), Expect = 4e-08
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 29 IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGD-QLSH 87
++ + G I W PQ ++LAH F+SH G NS +E++ +G+PI+ P Y + QL+
Sbjct: 327 LDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNA 386
Query: 88 VRHIVDLGAGVEL 100
+ +L VEL
Sbjct: 387 FLMVKELKLAVEL 399
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 49.5 bits (118), Expect = 6e-08
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGA 96
I+ W PQ +L+HP F++H G NS +E I G+P+I P + +Q + + IV+ L
Sbjct: 348 IKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRI 407
Query: 97 GVEL 100
GV +
Sbjct: 408 GVRV 411
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 48.7 bits (116), Expect = 8e-08
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD 93
IR W PQ +L+H F++H G NS LE + G+P++ P DQ + +VD
Sbjct: 347 IRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVD 402
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 48.2 bits (114), Expect = 2e-07
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQ 84
+ +W PQ ++L+H + F+SH G +S LE++ G+PI+ P Y +Q
Sbjct: 339 VTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ 385
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 47.3 bits (113), Expect = 2e-07
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 24 YEGDSIENLPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYGIPIIGVPFYG 82
Y + E GN+ R ++ L C I + G EA++ G P++ VP G
Sbjct: 221 YGPNKEEGREGNLTFRP-FSEEGFLRDLAECSAVICNAGFELLSEALYLGKPLLLVPLDG 279
Query: 83 --DQLSHVRHIVDLGAGVELSYFNITLESIA 111
+Q S+ ++ LG G+ + ++ +
Sbjct: 280 QFEQTSNALYLERLGYGIVMDMEDLDPAVLR 310
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 47.0 bits (111), Expect = 3e-07
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD 93
++ W PQ VL H F++H G NS LEA+ G+P++ P Y +Q + IVD
Sbjct: 338 VKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVD 393
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 46.4 bits (110), Expect = 6e-07
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 9 LVTAFSRTGLTVLWRYEGDSIENLP-GNVH-------IRKWIPQQDVLAHPNCRLFISHG 60
L A +G +W E LP G V + W PQ +VL H +++H
Sbjct: 295 LALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHC 354
Query: 61 GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDL-GAGVELSYF 103
G NS +EAI ++ P GDQ + +IVD+ GV +S F
Sbjct: 355 GWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGF 398
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 44.6 bits (106), Expect = 1e-06
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 55 LFISHGGVNSALEAIHYGIPIIGVP----FYGDQLSHVRHIVDLGAGVELSYFNITLESI 110
L IS G + E + G P I VP Q ++ +V GA + L +T E +
Sbjct: 75 LVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKL 134
Query: 111 AWA-TSIVLNNPRRY 124
A ++L R Y
Sbjct: 135 VEALLKLLLKPLRLY 149
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 45.0 bits (106), Expect = 2e-06
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGA 96
+ W PQ ++LAH F++H G +S LE++ G+P+I P + +Q + + D LG
Sbjct: 342 VPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGI 401
Query: 97 GVEL 100
V
Sbjct: 402 AVRS 405
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 43.9 bits (103), Expect = 4e-06
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 25 EGDSIENLPGNVH-------IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIG 77
E IE + G H I W Q +VL H F++H G +S+LE++ G+P++
Sbjct: 311 EETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVA 370
Query: 78 VPFYGDQLSHVR 89
P + DQ ++ +
Sbjct: 371 FPMWSDQPANAK 382
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 42.2 bits (99), Expect = 2e-05
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVP-----FYGDQL 85
IR W PQ +L H F++H G NS LE + G+P++ P FY ++L
Sbjct: 349 IRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKL 401
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 40.7 bits (95), Expect = 6e-05
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 34 GNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD 93
G +H+ W+PQ +L+H + F++H G NS +E + +G +I P +Q + R +
Sbjct: 340 GMIHV-GWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHG 398
Query: 94 LGAGVELS 101
G+E+
Sbjct: 399 KKLGLEVP 406
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 40.0 bits (93), Expect = 1e-04
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVE 99
W+ Q +L+HP+ F+SH G S E++ I+ VP GDQ+ + R + D L VE
Sbjct: 324 WVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVE 383
Query: 100 LS 101
++
Sbjct: 384 VA 385
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 39.9 bits (93), Expect = 1e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 32 LPGNVHIRKWIPQQDVLAH-PNCRLFISHGGVNSALEAIHYGIPIIGVPFYG--DQLSHV 88
NV IR+ I + N L I+HGG + EA+ G P+I +P G +Q ++
Sbjct: 227 YNENVEIRR-ITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNA 285
Query: 89 RHIVDLGAGVELSYFNITLE 108
+ DLG G+ L Y + L
Sbjct: 286 VKLEDLGCGIALEYKELRLL 305
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 35.8 bits (82), Expect = 0.003
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVR 89
W+ Q +L HP+ F++H G + E++ ++ +PF DQ+ R
Sbjct: 318 WVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTR 366
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 34.6 bits (80), Expect = 0.008
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 55 LFISHGGVNSALEAIHYGIPIIGVPF----YGDQLSHVRHIVDLGAGVELSYFNITLESI 110
L IS G + E + G+P I VP+ G Q + + + GA + + +T E +
Sbjct: 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314
Query: 111 AWATSIVLNNPRRY 124
A +L+NP +
Sbjct: 315 AELILRLLSNPEKL 328
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 33.1 bits (75), Expect = 0.022
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVR 89
W+ Q +L+HP+ F++H G S E++ I+ +P DQ+ R
Sbjct: 319 WVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITR 367
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 31.5 bits (72), Expect = 0.069
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 55 LFISHGGVNSALEAIHYGIPIIGVPF---YGDQLSHVRHIVDLGAG 97
L IS G ++ E G+P I +P+ DQ + + + DLGAG
Sbjct: 253 LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAG 298
>gnl|CDD|226488 COG3980, spsG, Spore coat polysaccharide biosynthesis protein,
predicted glycosyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 318
Score = 31.3 bits (71), Expect = 0.097
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 53 CRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAW 112
L IS G + EA+ G+P + +P +Q++ + LG +L Y L
Sbjct: 228 ADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYHLKDLAKDYE 286
Query: 113 ATSIVLNNPRR 123
I + RR
Sbjct: 287 ILQIQKDYARR 297
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
Mutations in this domain of human PIGA lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer
UDP, ADP, GDP or CMP linked sugars. The eukaryotic
glycogen synthases may be distant members of this
family.
Length = 158
Score = 29.5 bits (67), Expect = 0.26
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 31 NLPGNVHIRKWIPQQDVLAH-PNCRLFI--SH--GGVNSALEAIHYGIPIIGVPFYGDQL 85
L NV ++P +D++ LF+ S G LEA+ G+P+I G
Sbjct: 56 GLEDNVIFVGFVPDEDLIELYRIADLFVLPSRYEGFGLVLLEAMAAGVPVIATDVGG--P 113
Query: 86 SHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
+ + + D G+ + + E++A A +L +
Sbjct: 114 AEI--VKDGETGLLVDPGDA--EALAEAIEKLLKDEE 146
>gnl|CDD|149883 pfam08953, DUF1899, Domain of unknown function (DUF1899). This set
of domains is found in various eukaryotic proteins.
Function is unknown.
Length = 65
Score = 27.6 bits (62), Expect = 0.49
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 86 SHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
S RH+ A E Y +I + AW ++ NP+
Sbjct: 6 SKFRHVFGQPAKKEQCYEDIRISKNAWDSNFCAVNPK 42
>gnl|CDD|222322 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.
Length = 134
Score = 28.5 bits (64), Expect = 0.59
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 27 DSIENLPGNVHIRKWIPQ-QDVLAHPNCRLFISHGGVNS-----ALEAIHYGIPIIGVPF 80
+ + L NVH ++ +LA + + ++ + LEA+ G+P++
Sbjct: 45 EELARLAPNVHFLGFVEDLAALLA--SADVALAPLRFGAGSPLKLLEALAAGLPVVATDI 102
>gnl|CDD|184624 PRK14327, PRK14327, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 509
Score = 28.1 bits (63), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 13 FSRTGLTVLWRYEGDSIENLP----GNVHIRKWI 42
FS+ + +W EGD IENLP GN I+ W+
Sbjct: 185 FSKEMVVEVWSKEGDVIENLPKVREGN--IKAWV 216
>gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP-linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria and eukaryotes.
Length = 357
Score = 27.9 bits (63), Expect = 1.4
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 30 ENLPGNVHIRKWIPQQDVLA-HPNCRLFI--SHG-----GVNSALEAIHYGIPII 76
L V + ++ A C +F+ S G+ LEA+ +G P+I
Sbjct: 240 LGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGI-VLLEAMAFGKPVI 293
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 593
Score = 27.8 bits (62), Expect = 1.4
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 42 IPQQDVLAHPNCRLFISH 59
IPQ L H NC +++SH
Sbjct: 507 IPQLSALFHNNC-MYLSH 523
>gnl|CDD|179352 PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 27.6 bits (62), Expect = 1.5
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 54 RLFISHGGVNSALEAIHY----GIPIIGV 78
+ IS GG + L Y IPI+G+
Sbjct: 66 DMVISIGGDGTFLRTATYVGNSNIPILGI 94
>gnl|CDD|100001 cd04955, GT1_like_6, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
certain bacteria and Archaea.
Length = 363
Score = 27.2 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 43 PQQDVLAHPNCRLFI-SH--GGVN-SALEAIHYGIPII--GVPF 80
++L + ++ H GG N S LEA+ YG P++ PF
Sbjct: 260 ELLELLRY-AALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF 302
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 27.3 bits (60), Expect = 3.0
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 28 SIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQ--- 84
S+E L G ++ R++I + + ++ S + +L I IG+ D
Sbjct: 625 SLEQLLGMMYARRYIDKTVI--SELWSMY-SLQKFDFSLLQASGSIIHIGMLLLVDMFHS 681
Query: 85 LSHVRHIVDLGAGVE------LS-YFNITLESIAWATSI 116
L + ++ +G GVE LS Y I +
Sbjct: 682 LVGLSTLLLIGLGVEGLLDLMLSRYKCIAQIRVRQRVKF 720
>gnl|CDD|182419 PRK10377, PRK10377, PTS system glucitol/sorbitol-specific
transporter subunit IIA; Provisional.
Length = 120
Score = 26.2 bits (58), Expect = 3.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 20 VLWRYEGDSIENLPGNVHIRKWIPQ 44
V R++G + PG VH+ +P
Sbjct: 84 VTLRFDGLNEAEFPGTVHVAGPVPD 108
>gnl|CDD|227350 COG5017, COG5017, Uncharacterized conserved protein [Function
unknown].
Length = 161
Score = 26.3 bits (58), Expect = 3.7
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 54 RLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHV-RHIVDLG-AGVELSYFNITLESIA 111
R+ ISH G S L + P+I VP V H V+L E++Y +A
Sbjct: 67 RIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYV------VA 120
Query: 112 WA-TSIVLNNPRR 123
+ T +VL +
Sbjct: 121 CSPTELVLQAGLQ 133
>gnl|CDD|204088 pfam08888, HopJ, HopJ type III effector protein. Pathovars of
Pseudomonas syringae interact with their plant hosts
via the action of Hrp outer protein (Hop) effector
proteins, injected into plant cells by the type III
secretion system. The proteins in this family are
called HopJ after the original member HopPmaJ.
Length = 110
Score = 26.0 bits (58), Expect = 3.9
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 6/23 (26%)
Query: 44 QQDVLA------HPNCRLFISHG 60
++DVLA H N R F+ G
Sbjct: 77 REDVLANPEGTDHQNIRNFMKTG 99
>gnl|CDD|165451 PHA03180, PHA03180, helicase-primase primase subunit; Provisional.
Length = 1071
Score = 26.7 bits (59), Expect = 4.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 53 CRLFISHGGVNSALEAIHYGIPI 75
CR F S +NS +I +G PI
Sbjct: 111 CR-FTSESEINSIYASIMHGKPI 132
>gnl|CDD|226254 COG3731, SrlB, Phosphotransferase system sorbitol-specific
component IIA [Carbohydrate transport and metabolism].
Length = 123
Score = 25.5 bits (56), Expect = 5.6
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 20 VLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFI 57
V R++G + PG +H+ +P L LFI
Sbjct: 84 VTIRFDGATEAEFPGTIHVSGPVPD---LVAGGTILFI 118
>gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1
glycosyltransferases found specifically in certain
bacteria. amsK in Erwinia amylovora, has been reported
to be involved in the biosynthesis of amylovoran, a
exopolysaccharide acting as a virulence factor.
Length = 355
Score = 26.0 bits (58), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 16/65 (24%)
Query: 31 NLPGNVHIRKWIPQQDVLAH-PNCRLFI--SH--------GGVNSALEAIHYGIPII--- 76
L V + Q++V LF+ S G +EA+ G+P+I
Sbjct: 233 GLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTD 292
Query: 77 --GVP 79
G+P
Sbjct: 293 VSGIP 297
>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase. This family
comprised of three structural domains that can not be
separated in the linear sequence. In some organisms this
enzyme is found as a bifunctional polypeptide with
lysine ketoglutarate reductase. The saccharopine
dehydrogenase can also function as a saccharopine
reductase.
Length = 380
Score = 26.1 bits (58), Expect = 5.8
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 22 WRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIP-----II 76
+E + H R + ++++ G + + +P +
Sbjct: 184 RYWENGKWVEVGWGSHERTIPFPYGIGPGYAYEIYLNRPGTLTRVR---SWLPEADGVLF 240
Query: 77 GVPFYGDQLSHVRHIVDLG 95
G L+ ++ + DLG
Sbjct: 241 GTIRIPGYLTVIKLLGDLG 259
>gnl|CDD|240086 cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN
binding domain, group 4. Each monomer of OYE contains
FMN as a non-covalently bound cofactor, uses NADPH as a
reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Other members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase.
Length = 353
Score = 25.6 bits (57), Expect = 7.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 47 VLAHPNCRL-FISHGGVNS---ALEAIHYGIPIIGV 78
V RL I+ G +N+ ALEA+ G ++ +
Sbjct: 277 VKERIAGRLPLIAVGSINTPDDALEALETGADLVAI 312
>gnl|CDD|99997 cd04946, GT1_AmsK_like, This family is most closely related to the
GT1 family of glycosyltransferases. AmsK is involved in
the biosynthesis of amylovoran, which functions as a
virulence factor. It functions as a glycosyl transferase
which transfers galactose from UDP-galactose to a
lipid-linked amylovoran-subunit precursor. The members
of this family are found mainly in bacteria and Archaea.
Length = 407
Score = 25.8 bits (57), Expect = 7.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 31 NLPG---NVHIRKWIPQQDVLAHPNCRLFI----SHGGVNSALEAIHYGIPII 76
N G N + K + V +F+ S G S +EA+ +GIP+I
Sbjct: 292 NFTGELSNSEVYKLYKENPV------DVFVNLSESEGLPVSIMEAMSFGIPVI 338
>gnl|CDD|172952 PRK14477, PRK14477, bifunctional nitrogenase molybdenum-cofactor
biosynthesis protein NifE/NifN; Provisional.
Length = 917
Score = 25.9 bits (57), Expect = 8.9
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 71 YGIPIIGVPFYG-----DQLSHV-RHIVDLGAGVE 99
YGIP + FYG L + R + D G G+E
Sbjct: 254 YGIPYLEESFYGMTDTAKALRDIARELDDAGGGLE 288
>gnl|CDD|226807 COG4370, COG4370, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 412
Score = 25.6 bits (56), Expect = 9.5
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 15/59 (25%)
Query: 41 WIPQQDVLAHPNCRLFISHGGVNSAL---------------EAIHYGIPIIGVPFYGDQ 84
W P D NC L++S L +A+ G P+IG P G Q
Sbjct: 284 WQPLADRFGKDNCSLWLSQQSFADILHAADAALGMAGTATEQAVGLGKPVIGFPGQGPQ 342
>gnl|CDD|184699 PRK14478, PRK14478, nitrogenase molybdenum-cofactor biosynthesis
protein NifE; Provisional.
Length = 475
Score = 25.4 bits (56), Expect = 9.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 71 YGIPIIGVPFYG-----DQLSHV-RHIVDLGAGVEL 100
YGIP FYG D L + R +V+ GA EL
Sbjct: 261 YGIPFFEGSFYGIEDTSDSLRQIARLLVERGADAEL 296
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.444
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,593,021
Number of extensions: 586388
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 65
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)