RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10186
(124 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 166 bits (422), Expect = 4e-54
Identities = 43/122 (35%), Positives = 73/122 (59%)
Query: 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHG 60
M++ ++ +A ++ VLWR++G+ + L N + KWIPQ D+L HP R FI+HG
Sbjct: 35 MTEERANVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHG 94
Query: 61 GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120
G N EAI++GIP++G+P + DQ ++ H+ GA V + + ++ + A V+N+
Sbjct: 95 GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154
Query: 121 PR 122
P
Sbjct: 155 PS 156
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 115 bits (290), Expect = 6e-32
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 9 LVTAFSRTGLTVLWRYEGDSIE-----NLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVN 63
V AF L G + LP NV + W+PQ +L LF++H G
Sbjct: 253 CVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQ--ADLFVTHAGAG 310
Query: 64 SALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
+ E + P+I VP DQ + + LG +L+ T + + ++++P
Sbjct: 311 GSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPE 369
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 109 bits (274), Expect = 1e-29
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 9 LVTAFSRTGLTVLW----RYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNS 64
++A V+ + + +P NV + +W+PQ D+L FI+H G+ S
Sbjct: 276 CLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTK--ASAFITHAGMGS 333
Query: 65 ALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
+EA+ +P++ VP +Q + IV+LG G + +T E + A V ++P
Sbjct: 334 TMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 102 bits (256), Expect = 3e-27
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 9 LVTAFSRTGLTVLWRYEG----DSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNS 64
AF+ T V+ G + LP NV +WIP VLAH R ++HG +
Sbjct: 252 CAQAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH--ARACLTHGTTGA 309
Query: 65 ALEAIHYGIPIIGVPFYG-DQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
LEA G+P++ VP + + +++LG G L + SI A + +
Sbjct: 310 VLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSA 368
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 100 bits (252), Expect = 1e-26
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 9 LVTAFSRTGLTVL----WRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNS 64
AF V+ + + ++ +LP NV +W+P VL + ++HGG+ +
Sbjct: 268 CARAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHVKVLEQ--ATVCVTHGGMGT 325
Query: 65 ALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
+EA+++G P++ VP D R + LG G L +++ A V +P
Sbjct: 326 LMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPA 383
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 96.3 bits (240), Expect = 7e-25
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 9 LVTAFSRTG----LTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNS 64
+ + + + + +P NV + W+PQ +L H L + HGG +
Sbjct: 263 AIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGT 320
Query: 65 ALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
L A+ G+P + P+ GD ++ + + GAG L NI+ +S++ A +L
Sbjct: 321 TLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEES 378
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 91.0 bits (226), Expect = 7e-23
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 9 LVTAFSRTGLTVLWRY---EGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSA 65
L+ A ++ + + + + N+P NV ++P +L C + HGG S
Sbjct: 291 LLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGFVPMHALLPT--CAATVHHGGPGSW 348
Query: 66 LEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
A +G+P + +P D + + GAG+ L +T + + + VL++P
Sbjct: 349 HTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPA 405
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 87.9 bits (218), Expect = 7e-22
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 9 LVTAFSRTGLTVLW---RYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSA 65
L + G V+ +++ LP V P ++ C + + HGG +
Sbjct: 256 LSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIMPA--CDVVVHHGGHGTT 313
Query: 66 LEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
L + G+P + VP + R + GAGVE+ + +ES+ A + + ++
Sbjct: 314 LTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSS 370
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 84.5 bits (209), Expect = 1e-20
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 9 LVTAFSRTGLTVLW---RYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSA 65
+ A G+ + + +LP N I + +P L C L I GG +A
Sbjct: 242 VAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVPLNLFLRT--CELVICAGGSGTA 299
Query: 66 LEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITL--ESIAWATSIVLNNPR 122
A GIP + +P Y DQ + R++ GAG+ L E + + VL +
Sbjct: 300 FTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTG 358
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 81.0 bits (200), Expect = 3e-19
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 4/123 (3%)
Query: 3 DGMRTLLVTAFSRTGLTVLW--RYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHG 60
+ + A G V+ + + + + + Q + I HG
Sbjct: 252 ADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF--GRVAAVIHHG 309
Query: 61 GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNN 120
G + A G P I +P DQ + + +LG GV T +S++ A + L
Sbjct: 310 GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTP 369
Query: 121 PRR 123
Sbjct: 370 ETH 372
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 80.2 bits (198), Expect = 3e-19
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 6/117 (5%)
Query: 9 LVTAFSRTGLTVL---WRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSA 65
L R + ++ +++ + W P V C L + H G S
Sbjct: 236 LAKDLVRWDVELIVAAPDTVAEALRAEVPQARVG-WTPLDVVAPT--CDLLVHHAGGVST 292
Query: 66 LEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
L + G+P + +P + R + D GA + L + E+IA + +
Sbjct: 293 LTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDT 349
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 79.5 bits (196), Expect = 8e-19
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 4/119 (3%)
Query: 3 DGMRTLLVTAFSRTGLTVL--WRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHG 60
+ + A G V+ + G + + + + Q + + HG
Sbjct: 235 AEAARVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF--GRVAAVVHHG 292
Query: 61 GVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLN 119
G + G P + VP DQ + + DLG GV T+ES++ A + L
Sbjct: 293 GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT 351
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 76.4 bits (188), Expect = 1e-17
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 3 DGMRTLLVTAFSRTGLTVL----WRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFIS 58
+ V A G V+ W + + + + Q + I
Sbjct: 253 ADAAKVAVEAIRAQGRRVILSRGWT--ELVLPDDRDDCFAIDEVNFQALF--RRVAAVIH 308
Query: 59 HGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118
HG + A G+P + +P DQ + LG GV T ES++ A + VL
Sbjct: 309 HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVL 368
Query: 119 NNPRR 123
R
Sbjct: 369 APETR 373
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 75.3 bits (185), Expect = 2e-17
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 9 LVTAFSRTGLTVLW---RYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSA 65
++ A + + + LP NV W P +L C + HGG +
Sbjct: 255 IIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTPLHTLLRT--CTAVVHHGGGGTV 312
Query: 66 LEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGV 98
+ AI GIP + P DQ H G+
Sbjct: 313 MTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGI 345
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 67.6 bits (166), Expect = 1e-14
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGA 96
I W PQ VLAHP+ F++H G NS LE++ GIP+I P Y +Q + + + + A
Sbjct: 343 IPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRA 402
Query: 97 GVEL 100
+
Sbjct: 403 ALRP 406
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 66.9 bits (164), Expect = 3e-14
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGA 96
I W PQ ++L H + +F++H G NS LE I G+P+I PF+GDQ + L
Sbjct: 331 IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEI 390
Query: 97 GVEL 100
GV +
Sbjct: 391 GVGV 394
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 66.9 bits (164), Expect = 3e-14
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 40 KWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGV 98
W PQ +VLAH F++H G NS E++ G+P+I PF+GDQ + R + D L GV
Sbjct: 331 PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGV 390
Query: 99 EL 100
+
Sbjct: 391 RI 392
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 66.2 bits (162), Expect = 4e-14
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGA 96
I W PQ VL HP+ F++H G NS E+I G+P++ PF+ DQ + R I +
Sbjct: 357 IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEI 416
Query: 97 GVELSYFNITLESIAWA 113
G+E+ N+ E +A
Sbjct: 417 GMEIDT-NVKREELAKL 432
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 65.7 bits (161), Expect = 6e-14
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGA 96
I W PQ +VLAH F+SH G NS LE++ +G+PI+ P Y +Q + +V G
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 97 GVEL 100
G+ L
Sbjct: 396 GLGL 399
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 37.8 bits (86), Expect = 4e-04
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 2/89 (2%)
Query: 16 TGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPI 75
T + + L N+ + L + I EA+
Sbjct: 190 TSSSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMN-ESNKLIISASS-LVNEALLLKANF 247
Query: 76 IGVPFYGDQLSHVRHIVDLGAGVELSYFN 104
+ + +Q S + G VE Y
Sbjct: 248 KAICYVKNQESTATWLAKKGYEVEYKYLE 276
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 34.8 bits (79), Expect = 0.004
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 35 NVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY----GDQLSHVRH 90
V + + + L ISH G S L+++ P+I Q
Sbjct: 115 KVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADK 174
Query: 91 IVDLGAGVELSYFNITLESI 110
V+LG + L +
Sbjct: 175 FVELGYVWSCAPTETGLIAG 194
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 28.0 bits (62), Expect = 0.77
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 32 LPGNVHIRKWIPQQDVLA-HPNCRLFIS---HGGVNSALEAIHYGIPII 76
L + P L NC + ++ G N ++ + G+ +
Sbjct: 497 LGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGV 545
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 27.8 bits (61), Expect = 1.1
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 55 LFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAW 112
L I H V L A +P+ L V + + G + + +ES+
Sbjct: 384 LVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCT 441
>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione;
HET: GSH; 1.05A {Escherichia coli}
Length = 202
Score = 26.9 bits (60), Expect = 1.5
Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 4/35 (11%)
Query: 79 PFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWA 113
D ++ + + + Y N + W
Sbjct: 145 TLKTDTVN----LATIAIACAVGYLNFRRVAPGWC 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.0
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 34/109 (31%)
Query: 13 FSRTGLTVLWRYEGDSIENLPGNV--H----------IRKWIPQQDVLAHPNCRLFI--- 57
FS L R+ LP H I K + + +V + + I
Sbjct: 409 FSERKLKFSNRF-------LPVASPFHSHLLVPASDLINKDLVKNNVSFNAK-DIQIPVY 460
Query: 58 -SHGGVNSALEAIHYGIP------IIGVPFYGDQLSHVR--HIVDLGAG 97
+ G + L + I II +P + + + HI+D G G
Sbjct: 461 DTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding,
nucleus, zinc; 2.04A {Saccharomyces cerevisiae}
Length = 216
Score = 25.8 bits (57), Expect = 3.3
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 47 VLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD 93
+ H +C GG+ + L +P + L + +
Sbjct: 104 ICGHTDC------GGIKTCLTNQREALPKVNCSHLYKYLDDIDTMYH 144
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 25.7 bits (56), Expect = 4.6
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 55 LFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESI 110
L I H V L A +P+ L V + + G ++ + + ++
Sbjct: 387 LVICHQAVMRCLLAYFLDKAAEELPYLKCPLHTVLKLTPVAYGCKVESIFLNVAAV 442
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase;
KDTA, GSEA, glycosyltransferase superfamily B,; HET:
PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Length = 374
Score = 25.7 bits (57), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 56 FISHGGVNSALEAIHYGIPII 76
F++ GG N LE +GIP+I
Sbjct: 287 FVNIGGHN-LLEPTCWGIPVI 306
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 25.3 bits (56), Expect = 5.4
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 45 QDVLAHPNCR-LFISHGGVNSALEAIHYGIPIIGVPFYGD------QLSHVRHIVDLGAG 97
++ N L ++HGGV + A G+ +Y ++H+ +D
Sbjct: 134 SQIINDINDNLLIVTHGGVIRIILAHVLGVDWRNPQWYSTLAIGNASVTHITITIDDQIY 193
Query: 98 VELSYFNITL 107
+ + L
Sbjct: 194 ASVRSIGVPL 203
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 25.6 bits (56), Expect = 5.9
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 21 LWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIP----II 76
L+ W ++ A P+ V L + G+P ++
Sbjct: 230 LFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHL--MMEGVPSAKIVM 287
Query: 77 GVPFYG 82
GVPFYG
Sbjct: 288 GVPFYG 293
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
structural genomics, NADP, PSI, protein structure
initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Length = 278
Score = 25.3 bits (56), Expect = 6.2
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 29 IENLPGNVHIRKWIPQQDVLAHPNCRLFISHGG---VNSALEAIHYGIPIIGV 78
IE + + + Q N +S GG + L+ + PI G+
Sbjct: 45 IEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLKRCPPIFGI 97
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 25.3 bits (56), Expect = 7.1
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 59 HGGVNSALEAIHY-----GIP----IIGVPFYG 82
H + ++ + Y + G+PFYG
Sbjct: 182 HASYDDFVKDLKYWNEQCRASKSKIVGGLPFYG 214
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH;
1.75A {Ralstonia solanacearum} PDB: 3tot_A*
Length = 226
Score = 24.9 bits (55), Expect = 7.1
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWA 113
G+ L+ + D+ G L+Y + + W
Sbjct: 150 CNGNHLT----LADIAVGCALAYLDFRQPQVDWR 179
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 25.1 bits (55), Expect = 7.8
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 19 TVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSAL 66
V R +G+S V QQ V + F+ H N AL
Sbjct: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680
>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione,
structural genomics, protein structure initiative; HET:
GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*
Length = 213
Score = 24.7 bits (54), Expect = 8.3
Identities = 3/34 (8%), Positives = 7/34 (20%), Gaps = 4/34 (11%)
Query: 80 FYGDQLSHVRHIVDLGAGVELSYFNITLESIAWA 113
L + V S+ + +
Sbjct: 151 PRDGSLG----QAGISLAVAWSFSQMMVADQFNP 180
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 24.9 bits (55), Expect = 8.5
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 8/36 (22%)
Query: 55 LFISHGGVNSALEAIHY----GIP----IIGVPFYG 82
LF S G+P ++G P+YG
Sbjct: 202 LFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYG 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.444
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,033,181
Number of extensions: 116875
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 72
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)