RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10186
(124 letters)
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 86.7 bits (213), Expect = 7e-22
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 4/125 (3%)
Query: 1 MSDGMRTLLVTAFSRTGL--TVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFIS 58
+ + A G + + + + + + Q + I
Sbjct: 250 APADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGR--VAAVIH 307
Query: 59 HGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVL 118
HGG + A G P I +P DQ + + +LG GV T +S++ A + L
Sbjct: 308 HGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATAL 367
Query: 119 NNPRR 123
Sbjct: 368 TPETH 372
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 83.6 bits (205), Expect = 1e-20
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 2/112 (1%)
Query: 12 AFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHY 71
+ + + + + + + Q + I HG + A
Sbjct: 264 RAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRR--VAAVIHHGSAGTEHVATRA 321
Query: 72 GIPIIGVPFYGDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPRR 123
G+P + +P DQ + LG GV T ES++ A + VL R
Sbjct: 322 GVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETR 373
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 83.6 bits (205), Expect = 1e-20
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSIENLP--------GNVHIRKWIPQQDVLAHPN 52
L A + + +W + +LP G + W PQ +VLAH
Sbjct: 278 PPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEA 337
Query: 53 CRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSYFNITLESIA 111
F++H G NS E++ G+P+I PF+GDQ + R + D L GV + T +
Sbjct: 338 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLM 397
Query: 112 WATSIVLNNPR 122
+L+ +
Sbjct: 398 SCFDQILSQEK 408
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 83.7 bits (205), Expect = 1e-20
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 22 WRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY 81
+ + + I W PQ VL HP+ F++H G NS E+I G+P++ PF+
Sbjct: 334 VIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFF 393
Query: 82 GDQLSHVRHIVD-LGAGVELSYFNITLESIAWATSIVLNNPR 122
DQ + R I + G+E+ N+ E +A + V+ +
Sbjct: 394 ADQPTDCRFICNEWEIGMEIDT-NVKREELAKLINEVIAGDK 434
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 76.3 bits (186), Expect = 4e-18
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 25 EGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQ 84
G I W PQ VLAHP+ F++H G NS LE++ GIP+I P Y +Q
Sbjct: 325 PGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQ 384
Query: 85 LSHVRHIVD-LGAGVELS---YFNITLESIAWATSIVLNNPR 122
+ + + + A + + E +A ++
Sbjct: 385 KMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEE 426
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 73.6 bits (179), Expect = 3e-17
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 16/140 (11%)
Query: 1 MSDGMRTLLVTAFSRTGLTVLWRYEGD---------SIENLPGNVHIRKWIPQQDVLAHP 51
+ +G+ LW + L G I W PQ +VLAH
Sbjct: 288 FGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHK 347
Query: 52 NCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVD-LGAGVELSY------FN 104
F+SH G NS LE++ +G+PI+ P Y +Q + +V G G+ L
Sbjct: 348 AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 407
Query: 105 ITLESIAWATSIVLNNPRRY 124
+ E I +++
Sbjct: 408 VAAEEIEKGLKDLMDKDSIV 427
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 72.4 bits (176), Expect = 1e-16
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 8/129 (6%)
Query: 1 MSDGMRTLLVTAFSRTGLTVLWRYEG--DSIENLPGNVHIRKWIPQQDVLAHPNCRLFIS 58
+ + + A +G ++ + + + + + Q++ I
Sbjct: 235 ATADAAKMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGR--VAAAIH 292
Query: 59 HGGVNSALEAIHYGIPIIGVPFYGDQLSH----VRHIVDLGAGVELSYFNITLESIAWAT 114
H + L A+ GIP I V D + + +LG GV + T++S++ A
Sbjct: 293 HDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVPTIDSLSAAL 352
Query: 115 SIVLNNPRR 123
L R
Sbjct: 353 DTALAPEIR 361
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Length = 351
Score = 30.5 bits (67), Expect = 0.045
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 37 HIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY---GDQLSHVRHIVD 93
H A+ + + G + E G+P + VPF Q + +
Sbjct: 233 HKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEK 292
Query: 94 LGAGVELSYFNITLESIA 111
GA + ++++++A
Sbjct: 293 AGAAKIIEQPQLSVDAVA 310
>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus
fumigatus [TaxId: 5085]}
Length = 333
Score = 25.9 bits (56), Expect = 1.4
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 14/93 (15%)
Query: 6 RTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHI---------RKWIPQQDVLAHPNCRLF 56
+ L+T S G + ++ ++ Q + +
Sbjct: 172 QHFLLTVASPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPL 231
Query: 57 ISHGGVNSALEA-IHYGIP----IIGVPFYGDQ 84
+ +AL+ G+P ++G+P Q
Sbjct: 232 STPFNTQTALDLYRAGGVPANKIVLGMPLDNPQ 264
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
{Thermotoga maritima [TaxId: 2336]}
Length = 332
Score = 25.4 bits (55), Expect = 2.0
Identities = 7/71 (9%), Positives = 23/71 (32%)
Query: 1 MSDGMRTLLVTAFSRTGLTVLWRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHG 60
+ + + + + + ++ + D + G + +I + L G
Sbjct: 106 IDEDLSAVCLGRGEDGTRILKFQPQDDRLIFEKGRTPLPPYIKNEVPLERYQTVYAKEEG 165
Query: 61 GVNSALEAIHY 71
V + +H+
Sbjct: 166 SVAAPTAGLHF 176
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 25.5 bits (54), Expect = 2.0
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Query: 22 WRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFY 81
E + + R+++ + ALEA+ G I
Sbjct: 302 SLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVG 361
Query: 82 GDQLSHVRHIVDLGAGVELSYFNITLESIAWATSIVLNNPR 122
G +R I+ G+ + + +A A L R
Sbjct: 362 G-----LRDIITNETGILVKAGDP--GELANAILKALELSR 395
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 24.9 bits (53), Expect = 2.8
Identities = 12/75 (16%), Positives = 25/75 (33%)
Query: 38 IRKWIPQQDVLAHPNCRLFISHGGVNSALEAIHYGIPIIGVPFYGDQLSHVRHIVDLGAG 97
+++ P L L I H V L A +P+ L V + + G
Sbjct: 120 VQRLEPVIMELERQENVLVICHQAVMRCLLAYFLDKAAEELPYLKCPLHTVLKLTPVAYG 179
Query: 98 VELSYFNITLESIAW 112
++ + + ++
Sbjct: 180 CKVESIFLNVAAVNT 194
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 24.5 bits (52), Expect = 4.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 81 YGDQLSH--VRHIVDLGAGVELSYFNITLESIAW 112
+G Q + R + +LG EL +++T I
Sbjct: 13 FGSQYTQLVARRVRELGVYCELWAWDVTEAQIRD 46
>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase
{Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 360
Score = 24.1 bits (51), Expect = 5.8
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 22 WRYEGDSIENLPGNVHIRKWIPQQDVLAHPNCRLFISHG 60
W+Y +H+ + +DVL+ C +I HG
Sbjct: 252 WKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHG 290
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.444
Gapped
Lambda K H
0.267 0.0389 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,611
Number of extensions: 21715
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 19
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.8 bits)