Query psy10187
Match_columns 78
No_of_seqs 115 out of 254
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:05:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h28_A Sulfide-quinone reducta 24.2 17 0.00058 26.2 0.1 23 10-32 377-399 (430)
2 3sx6_A Sulfide-quinone reducta 15.4 33 0.0011 24.8 -0.0 21 10-30 389-409 (437)
3 3tgu_G UQCRQ, mitochondrial ub 13.6 1.4E+02 0.0047 17.9 2.5 33 23-55 27-59 (81)
4 1c94_A Retro-GCN4 leucine zipp 10.2 1.4E+02 0.0048 15.5 1.5 17 5-21 12-28 (38)
5 2i9n_A MHB4A peptide; beta-hai 8.5 1.3E+02 0.0045 15.2 0.9 9 13-21 22-30 (33)
6 3hyw_A Sulfide-quinone reducta 8.5 74 0.0025 22.9 -0.0 23 10-32 377-399 (430)
7 2i9o_A MHB8A peptide; beta-hai 7.4 1.8E+02 0.0062 15.0 1.2 9 13-21 26-34 (37)
8 3gzf_A Replicase polyprotein 1 6.6 3.4E+02 0.012 17.0 2.4 35 29-64 54-90 (96)
9 3si5_X Protein CASC5; BUBR1-bl 6.4 1.6E+02 0.0056 14.0 0.7 6 12-17 15-20 (24)
10 2ep8_A Pescadillo homolog 1; A 5.8 76 0.0026 19.2 -1.0 17 27-43 3-19 (100)
No 1
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=24.22 E-value=17 Score=26.21 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.6
Q ss_pred HHHHHHHhhhHhcccccCCCCcc
Q psy10187 10 IVHYTKRVLETLFVHRFSHATMP 32 (78)
Q Consensus 10 ~lHf~KR~lEtlFVHrfS~~tmP 32 (78)
..|..|+.+|.-|+.||.++..+
T Consensus 377 ~~~~~K~~~~~~~~~~~~~~~~~ 399 (430)
T 3h28_A 377 WAHYFKTAFEKYFLWKVRNGNIA 399 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHhccCCcC
Confidence 46899999999999999988876
No 2
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=15.36 E-value=33 Score=24.80 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.2
Q ss_pred HHHHHHHhhhHhcccccCCCC
Q psy10187 10 IVHYTKRVLETLFVHRFSHAT 30 (78)
Q Consensus 10 ~lHf~KR~lEtlFVHrfS~~t 30 (78)
..|..|+.+|..|+.||.+|.
T Consensus 389 ~~~~~K~~~~~~f~~~~~~g~ 409 (437)
T 3sx6_A 389 WVHLAKVAFEKYFIRKMKMGV 409 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 468999999999999998765
No 3
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=13.63 E-value=1.4e+02 Score=17.91 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=21.3
Q ss_pred ccccCCCCccchhhhhhhHHHHHHHHHHHHHhh
Q psy10187 23 VHRFSHATMPIMNLFKNCGYYWGFTAYVAYHVN 55 (78)
Q Consensus 23 VHrfS~~tmP~~n~fkn~~yYw~~~~~~~y~i~ 55 (78)
-+-+|++---+..-++++..||+--..++|.++
T Consensus 27 ag~~~~~i~N~~RR~~~q~l~v~pPfi~~Y~i~ 59 (81)
T 3tgu_G 27 PNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLY 59 (81)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 344555444444556799999987777777653
No 4
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=10.21 E-value=1.4e+02 Score=15.53 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhHh
Q psy10187 5 AALCYIVHYTKRVLETL 21 (78)
Q Consensus 5 ~~~~~~lHf~KR~lEtl 21 (78)
-..--.+||-|-++|..
T Consensus 12 ravenelhynkslleev 28 (38)
T 1c94_A 12 RAVENELHYNKSLLEEV 28 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33445689999999864
No 5
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=8.53 E-value=1.3e+02 Score=15.23 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=7.1
Q ss_pred HHHHhhhHh
Q psy10187 13 YTKRVLETL 21 (78)
Q Consensus 13 f~KR~lEtl 21 (78)
|.||+-|..
T Consensus 22 yakriaeam 30 (33)
T 2i9n_A 22 YAKRIAEAM 30 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 789998853
No 6
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=8.47 E-value=74 Score=22.92 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=19.2
Q ss_pred HHHHHHHhhhHhcccccCCCCcc
Q psy10187 10 IVHYTKRVLETLFVHRFSHATMP 32 (78)
Q Consensus 10 ~lHf~KR~lEtlFVHrfS~~tmP 32 (78)
..|+.|+-+|.-|++++.++.++
T Consensus 377 ~~~~~K~~~~~~~~w~~~~~~~~ 399 (430)
T 3hyw_A 377 WAHYFKTAFEKYFLWKVRNGNIA 399 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc
Confidence 35899999999999998877665
No 7
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=7.36 E-value=1.8e+02 Score=15.00 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=7.1
Q ss_pred HHHHhhhHh
Q psy10187 13 YTKRVLETL 21 (78)
Q Consensus 13 f~KR~lEtl 21 (78)
|.||+-|..
T Consensus 26 yakriaeam 34 (37)
T 2i9o_A 26 YAKRIAEAM 34 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 789998853
No 8
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=6.58 E-value=3.4e+02 Score=16.98 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=20.9
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHhhC--CCCCCChh
Q psy10187 29 ATMPIMNLFKNCGYYWGFTAYVAYHVNH--PLFSPPNF 64 (78)
Q Consensus 29 ~tmP~~n~fkn~~yYw~~~~~~~y~i~~--p~~t~p~~ 64 (78)
|+|--..-=.-|.= |+.-++..|.-.| -+|+||+.
T Consensus 54 Gs~~~adYr~Ac~A-hLakAl~~fs~~g~d~LYtPP~~ 90 (96)
T 3gzf_A 54 GSMGEADYRMACYA-HLGKALMDYSVSRNDKLYTPPTV 90 (96)
T ss_dssp SCCCHHHHHHHHHH-HHHHHHHHHHHSCCCEEECCCEE
T ss_pred CCcchHHHHHHHHH-HHHHHHHHHhccCCceeeCCCcc
Confidence 56655444444443 4555667777665 67888863
No 9
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=6.41 E-value=1.6e+02 Score=14.04 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=4.4
Q ss_pred HHHHHh
Q psy10187 12 HYTKRV 17 (78)
Q Consensus 12 Hf~KR~ 17 (78)
-|+||+
T Consensus 15 dFIKRL 20 (24)
T 3si5_X 15 DFIKRL 20 (26)
T ss_pred HHHHHH
Confidence 378886
No 10
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.82 E-value=76 Score=19.21 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=12.6
Q ss_pred CCCCccchhhhhhhHHH
Q psy10187 27 SHATMPIMNLFKNCGYY 43 (78)
Q Consensus 27 S~~tmP~~n~fkn~~yY 43 (78)
|+..-|..++|+++.+|
T Consensus 3 ~~~~~~~~~LF~g~~F~ 19 (100)
T 2ep8_A 3 SGSSGKHKKLFEGLKFF 19 (100)
T ss_dssp CCCCSCSCCTTSSCEEE
T ss_pred CcccCchHHHcCCcEEE
Confidence 44456778889988886
Done!