Query psy10187
Match_columns 78
No_of_seqs 115 out of 254
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 20:06:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10187.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10187hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i5nh2 f.23.10.1 (H:1-36) Pho 30.1 18 0.0013 17.6 2.1 16 2-17 20-35 (36)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 11.1 78 0.0057 14.2 1.9 12 43-54 10-21 (26)
3 d1etea_ a.26.1.2 (A:) Flt3 lig 10.8 72 0.0053 19.5 2.2 18 4-21 43-60 (134)
4 d1zpsa1 b.168.1.1 (A:8-131) Ph 7.2 70 0.0051 19.4 1.0 18 14-31 40-57 (124)
5 d2p5zx2 b.106.1.1 (X:15-201) H 6.6 87 0.0064 18.9 1.2 11 11-21 156-166 (187)
6 d1ecia_ a.33.1.1 (A:) Ectatomi 5.9 85 0.0062 15.0 0.7 8 11-18 27-34 (37)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 5.5 1.5E+02 0.011 16.2 1.7 34 22-55 26-59 (75)
8 d3cx5h1 f.23.13.1 (H:2-94) Ubi 5.4 2.8E+02 0.021 15.6 3.4 34 22-55 36-69 (93)
9 d1ofda3 d.153.1.1 (A:1-430) Al 5.1 93 0.0068 22.2 0.8 13 24-36 205-217 (430)
10 d1ea0a3 d.153.1.1 (A:1-422) Al 5.1 95 0.0069 22.0 0.8 13 24-36 209-221 (422)
No 1
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=30.13 E-value=18 Score=17.63 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHh
Q psy10187 2 VSLAALCYIVHYTKRV 17 (78)
Q Consensus 2 ~~~~~~~~~lHf~KR~ 17 (78)
|.+..+...+-|++||
T Consensus 20 qwlviwtvvllylrre 35 (36)
T d2i5nh2 20 QWLVIWTVVLLYLRRE 35 (36)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhhccc
Confidence 5566777888999997
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.06 E-value=78 Score=14.23 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHh
Q psy10187 43 YWGFTAYVAYHV 54 (78)
Q Consensus 43 Yw~~~~~~~y~i 54 (78)
+|+|-+.+.|++
T Consensus 10 fw~ffalli~yl 21 (26)
T d1rzhh2 10 FWIFLAGLIYYL 21 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 577655554543
No 3
>d1etea_ a.26.1.2 (A:) Flt3 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.77 E-value=72 Score=19.51 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhHh
Q psy10187 4 LAALCYIVHYTKRVLETL 21 (78)
Q Consensus 4 ~~~~~~~lHf~KR~lEtl 21 (78)
..-++|.+|+.+|-+|.+
T Consensus 43 ~C~alW~L~laqr~~~rl 60 (134)
T d1etea_ 43 LCGGLWRLVLAQRWMERL 60 (134)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345789999999988876
No 4
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.16 E-value=70 Score=19.37 Aligned_cols=18 Identities=33% Similarity=0.312 Sum_probs=14.8
Q ss_pred HHHhhhHhcccccCCCCc
Q psy10187 14 TKRVLETLFVHRFSHATM 31 (78)
Q Consensus 14 ~KR~lEtlFVHrfS~~tm 31 (78)
+++.+||=.+|-||+++-
T Consensus 40 l~~Tl~tg~~~y~SRSR~ 57 (124)
T d1zpsa1 40 LRRTLETGTAHYWSTSRG 57 (124)
T ss_dssp HHHHHHHSBCEEEETTTT
T ss_pred HHHHHhcCcEEEEEhhhh
Confidence 577899999999998653
No 5
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393 {Escherichia coli o6 [TaxId: 217992]}
Probab=6.57 E-value=87 Score=18.87 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=9.3
Q ss_pred HHHHHHhhhHh
Q psy10187 11 VHYTKRVLETL 21 (78)
Q Consensus 11 lHf~KR~lEtl 21 (78)
+.|++|++|--
T Consensus 156 ~~Fl~RL~ee~ 166 (187)
T d2p5zx2 156 LTFVSRLLSEV 166 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 57999999975
No 6
>d1ecia_ a.33.1.1 (A:) Ectatomin subunit A, EA {Ant (Ectatomma tuberculatum), venom [TaxId: 39300]}
Probab=5.87 E-value=85 Score=15.01 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=5.9
Q ss_pred HHHHHHhh
Q psy10187 11 VHYTKRVL 18 (78)
Q Consensus 11 lHf~KR~l 18 (78)
.-|+|||-
T Consensus 27 atyikrec 34 (37)
T d1ecia_ 27 ATYIKREC 34 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45899984
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.51 E-value=1.5e+02 Score=16.15 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred cccccCCCCccchhhhhhhHHHHHHHHHHHHHhh
Q psy10187 22 FVHRFSHATMPIMNLFKNCGYYWGFTAYVAYHVN 55 (78)
Q Consensus 22 FVHrfS~~tmP~~n~fkn~~yYw~~~~~~~y~i~ 55 (78)
|-+-||++.--....+++...|.+--..++|.++
T Consensus 26 fag~~~~gi~N~~RR~~~~~l~v~PPfi~~Y~iy 59 (75)
T d1ppjg_ 26 FPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVY 59 (75)
T ss_dssp STTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHhcccHHHHHhHHhceEEcCHHHHHHHHH
Confidence 4455665544445557778888876666777665
No 8
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.44 E-value=2.8e+02 Score=15.56 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=24.7
Q ss_pred cccccCCCCccchhhhhhhHHHHHHHHHHHHHhh
Q psy10187 22 FVHRFSHATMPIMNLFKNCGYYWGFTAYVAYHVN 55 (78)
Q Consensus 22 FVHrfS~~tmP~~n~fkn~~yYw~~~~~~~y~i~ 55 (78)
|-+-||++---....+++...|.+--..++|.++
T Consensus 36 fag~~~~~ifN~~RR~r~q~lyv~PPfi~~Y~iy 69 (93)
T d3cx5h1 36 LQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWW 69 (93)
T ss_dssp SCCSTTTTSSSCSHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccchHHhcccHHHHhhhhhceEEcchHHHHHHHH
Confidence 5566777776677778999999886666666554
No 9
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Probab=5.14 E-value=93 Score=22.16 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=10.0
Q ss_pred cccCCCCccchhh
Q psy10187 24 HRFSHATMPIMNL 36 (78)
Q Consensus 24 HrfS~~tmP~~n~ 36 (78)
-|||.+|.|--.+
T Consensus 205 ~RFSTNT~PsW~l 217 (430)
T d1ofda3 205 RRFSTNTMPKWPL 217 (430)
T ss_dssp ECCCSSSCCCGGG
T ss_pred EEEecCCCCcchh
Confidence 4999999986544
No 10
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Probab=5.12 E-value=95 Score=21.98 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=9.6
Q ss_pred cccCCCCccchhh
Q psy10187 24 HRFSHATMPIMNL 36 (78)
Q Consensus 24 HrfS~~tmP~~n~ 36 (78)
-|||.+|.|--.+
T Consensus 209 ~RFSTNT~PsW~l 221 (422)
T d1ea0a3 209 QRYSTNTFPTWPL 221 (422)
T ss_dssp ECCCSCSCCCSTT
T ss_pred eeeeccCCCchhh
Confidence 3899999885443
Done!