RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10187
         (78 letters)



>d3eeqa1 c.151.1.1 (A:215-335) Cobalamin biosynthesis protein G,
          CbiG {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 121

 Score = 27.5 bits (61), Expect = 0.11
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 46 FTAYVAYHVNHPLFSPPNFVQVFVGLAAFAEFC 78
                 +  +P  +PP+   + VGL   AE  
Sbjct: 59 VNEEEINNFMNPCLTPPSKTLIEVGLKGVAEIS 91


>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 99

 Score = 23.6 bits (51), Expect = 2.0
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 49 YVAYHVNHPLFSPPNFV 65
             Y++ HP+   P   
Sbjct: 42 EARYYIKHPVIDNPQIY 58


>d3by5a1 c.151.1.1 (A:8-130) Cobalamin biosynthesis protein CobE
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 123

 Score = 23.6 bits (51), Expect = 2.9
 Identities = 3/31 (9%), Positives = 6/31 (19%)

Query: 46 FTAYVAYHVNHPLFSPPNFVQVFVGLAAFAE 76
                  V     +         G  + +E
Sbjct: 61 VAQERLEAVAAETMTFSQASLDHSGSPSVSE 91


>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 114

 Score = 23.2 bits (50), Expect = 3.6
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 33 IMNLFKNCGYYWGFTAYVAYHVNHPLFSPPNF 64
          + NL +          + AY V HP F+    
Sbjct: 42 LGNLIRAELLNDRKVLFAAYKVEHPFFARFKL 73


>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
           10665]}
          Length = 282

 Score = 23.3 bits (49), Expect = 4.2
 Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 23  VHRFSHATM-PIMNLFKNCGYYWGFTA 48
            H  +  ++  I++   NC + +G + 
Sbjct: 234 CHLATGKSISSIISGLNNCMFKFGLSG 260


>d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 139

 Score = 22.9 bits (49), Expect = 4.5
 Identities = 6/25 (24%), Positives = 8/25 (32%)

Query: 54  VNHPLFSPPNFVQVFVGLAAFAEFC 78
               L SP        G ++ AE  
Sbjct: 79  YEPRLLSPSAVALRETGCSSVAEAA 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.335    0.143    0.489 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 311,581
Number of extensions: 11814
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 8
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.1 bits)