BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10189
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 281 bits (718), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 135/210 (64%), Positives = 166/210 (79%), Gaps = 4/210 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
MEAIAK+DF ATA+DELSF++ +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60
Query: 61 YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +GK+FL
Sbjct: 61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120
Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
WVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
D I V D SD +WW G + G+FP Y+
Sbjct: 181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 138/200 (69%), Gaps = 29/200 (14%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
A YDF EL F+RGD++ V LN E D NWY+A
Sbjct: 5 AKYDFKATADDELSFKRGDILKV-------------------------LNEECDQNWYKA 39
Query: 219 ELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSV 277
EL+GK+G IP NYIEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSV
Sbjct: 40 ELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSV 99
Query: 278 KCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-C 334
K + VQHFKVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 100 KFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPT 159
Query: 335 LVQALYDFTPQEPGELEFRR 354
VQAL+DF PQE GEL FRR
Sbjct: 160 YVQALFDFDPQEDGELGFRR 179
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
A DF+ + EL FR+ + +++ D NW++ G+ G+ P NY+ N +
Sbjct: 163 ALFDFDPQEDGELGFRRGDFIHVMD-NSDPNWWKGACHGQTGMFPRNYVTPVNRN 216
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 98/119 (82%), Gaps = 4/119 (3%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
P NYIEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHF
Sbjct: 4 PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 63
Query: 108 KVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDF 163
KVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQAL+DF
Sbjct: 64 KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDF 122
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 98/119 (82%), Gaps = 4/119 (3%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
P NYIEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHF
Sbjct: 4 PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 63
Query: 287 KVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDF 342
KVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQAL+DF
Sbjct: 64 KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDF 122
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 94/115 (81%), Gaps = 4/115 (3%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
P NYIEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHF
Sbjct: 3 PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 62
Query: 108 KVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
KVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 63 KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 117
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 94/115 (81%), Gaps = 4/115 (3%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
P NYIEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHF
Sbjct: 3 PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 62
Query: 287 KVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
KVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 63 KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 117
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 90/107 (84%), Gaps = 3/107 (2%)
Query: 51 NYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
NYIEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKV
Sbjct: 4 NYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63
Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 154
LRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 64 LRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 110
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 90/107 (84%), Gaps = 3/107 (2%)
Query: 230 NYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
NYIEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKV
Sbjct: 4 NYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 333
LRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 64 LRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 110
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 53 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 2 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 61
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 62 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 2 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 61
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 62 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 53 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 61 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 61 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 53 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 61 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 61 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 53 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 2 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 61
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 62 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 2 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 61
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++ VQA
Sbjct: 62 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2
Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 3/105 (2%)
Query: 53 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 154
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 61 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 105
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 3/105 (2%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 333
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 61 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 105
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 55 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
MK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD
Sbjct: 1 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 60
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
+GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 97
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
MK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD
Sbjct: 1 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 60
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
+GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 97
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain
Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
Length = 98
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 55 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
MK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD
Sbjct: 1 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 60
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
+GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 97
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
MK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD
Sbjct: 1 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 60
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
+GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 97
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 55 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
MK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD
Sbjct: 4 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 63
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
+GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 64 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 100
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
MK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD
Sbjct: 4 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 63
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
+GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 64 AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 100
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 85/101 (84%), Gaps = 3/101 (2%)
Query: 57 NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
+H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +G
Sbjct: 2 SHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 61
Query: 116 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 154
K+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 62 KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 102
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 85/101 (84%), Gaps = 3/101 (2%)
Query: 236 NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
+H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +G
Sbjct: 2 SHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 61
Query: 295 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 333
K+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 62 KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 102
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
Query: 56 KNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
K H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +
Sbjct: 1 KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 115 GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61 GKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
Query: 235 KNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
K H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +
Sbjct: 1 KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 294 GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61 GKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/94 (69%), Positives = 80/94 (85%), Gaps = 1/94 (1%)
Query: 58 HDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 116
H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +GK
Sbjct: 2 HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGK 61
Query: 117 FFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 62 YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 95
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/94 (69%), Positives = 80/94 (85%), Gaps = 1/94 (1%)
Query: 237 HDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 295
H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +GK
Sbjct: 2 HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGK 61
Query: 296 FFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 62 YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 95
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 83/98 (84%), Gaps = 3/98 (3%)
Query: 60 WYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +GK+F
Sbjct: 3 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 62
Query: 119 LWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 154
LWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 63 LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 100
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 83/98 (84%), Gaps = 3/98 (3%)
Query: 239 WYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +GK+F
Sbjct: 3 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 62
Query: 298 LWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 333
LWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ VP++
Sbjct: 63 LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 100
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 60 WYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +GK+F
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 119 LWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
LWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 65 LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 239 WYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +GK+F
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 298 LWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
LWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 65 LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 58/59 (98%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
MEAIAKHDF+ATA+DELSFRK+Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHD
Sbjct: 1 MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHD 59
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 44/80 (55%), Gaps = 25/80 (31%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
A +DF+ EL FR+ ++ ILNMEDD NWYRA
Sbjct: 5 AKHDFSATADDELSFRKTQILK-------------------------ILNMEDDSNWYRA 39
Query: 219 ELDGKEGLIPSNYIEMKNHD 238
ELDGKEGLIPSNYIEMKNHD
Sbjct: 40 ELDGKEGLIPSNYIEMKNHD 59
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 57/59 (96%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
MEAIAKHDF+ATA+DELSFRK Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHD
Sbjct: 1 MEAIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHD 59
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 45/80 (56%), Gaps = 25/80 (31%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
A +DF+ EL FR+G ++ ILNMEDD NWYRA
Sbjct: 5 AKHDFSATADDELSFRKGQILK-------------------------ILNMEDDSNWYRA 39
Query: 219 ELDGKEGLIPSNYIEMKNHD 238
ELDGKEGLIPSNYIEMKNHD
Sbjct: 40 ELDGKEGLIPSNYIEMKNHD 59
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 74/99 (74%)
Query: 51 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
++I+++ +W++ ++R AE LL K G F+IR S+SSPGDFS+SV+ D VQHFKV+
Sbjct: 2 SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 61
Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 149
RD+ G +FLW KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 62 RDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 100
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 74/99 (74%)
Query: 230 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
++I+++ +W++ ++R AE LL K G F+IR S+SSPGDFS+SV+ D VQHFKV+
Sbjct: 2 SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 61
Query: 290 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 328
RD+ G +FLW KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 62 RDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 100
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 11/146 (7%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMKN--- 57
E IAK++F+ TAE +L F K VL I+ + D NWY+A+ G+EG+IP+NY++ +
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 72
Query: 58 -------HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
W++G+ITR AERLL G FL+R S + PGD++L V C V+H++++
Sbjct: 73 AGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIM 132
Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRT 136
+S V F +L +LVE++ T
Sbjct: 133 YHASKLSIDEEVYFENLMQLVEHYTT 158
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 38/173 (21%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
EC+ A Y+F +L F +GDV+T I+ + D
Sbjct: 13 ECI--AKYNFHGTAEQDLPFCKGDVLT-------------------------IVAVTKDP 45
Query: 214 NWYRAELD-GKEGLIPSNYIEMKN----------HDWYYGRITRADAERLLSNKHEGAFL 262
NWY+A+ G+EG+IP+NY++ + W++G+ITR AERLL G FL
Sbjct: 46 NWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFL 105
Query: 263 IRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRT 315
+R S + PGD++L V C V+H++++ +S V F +L +LVE++ T
Sbjct: 106 VRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTT 158
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHD 59
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI ++ H
Sbjct: 86 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 145
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S GK ++
Sbjct: 146 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 205
Query: 120 WV-VKFNSLNELVEYHRTAS 138
+FN+L ELV +H T +
Sbjct: 206 SSESRFNTLAELVHHHSTVA 225
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAF 261
+L + W A+ +G +PSNYI ++ H WY+G ++R AE LLS+ G+F
Sbjct: 109 VLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSF 168
Query: 262 LIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
L+R SESSPG S+S++ V H+++ S GK ++ +FN+L ELV +H T +
Sbjct: 169 LVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 225
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHD 59
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI ++ H
Sbjct: 44 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 103
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S GK ++
Sbjct: 104 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 163
Query: 120 WV-VKFNSLNELVEYHRTAS 138
+FN+L ELV +H T +
Sbjct: 164 SSESRFNTLAELVHHHSTVA 183
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAF 261
+L + W A+ +G +PSNYI ++ H WY+G ++R AE LLS+ G+F
Sbjct: 67 VLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSF 126
Query: 262 LIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
L+R SESSPG S+S++ V H+++ S GK ++ +FN+L ELV +H T +
Sbjct: 127 LVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 183
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHD 59
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI ++ H
Sbjct: 12 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 71
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S GK ++
Sbjct: 72 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 131
Query: 120 WV-VKFNSLNELVEYHRTAS 138
+FN+L ELV +H T +
Sbjct: 132 SSESRFNTLAELVHHHSTVA 151
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAF 261
+L + W A+ +G +PSNYI ++ H WY+G ++R AE LLS+ G+F
Sbjct: 35 VLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSF 94
Query: 262 LIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
L+R SESSPG S+S++ V H+++ S GK ++ +FN+L ELV +H T +
Sbjct: 95 LVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 151
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHD 59
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI ++ H
Sbjct: 47 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 106
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S GK ++
Sbjct: 107 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 166
Query: 120 WV-VKFNSLNELVEYHRTAS 138
+FN+L ELV +H T +
Sbjct: 167 SSESRFNTLAELVHHHSTVA 186
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAF 261
+L + W A+ +G +PSNYI ++ H WY+G ++R AE LLS+ G+F
Sbjct: 70 VLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSF 129
Query: 262 LIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
L+R SESSPG S+S++ V H+++ S GK ++ +FN+L ELV +H T +
Sbjct: 130 LVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 186
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
+A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+ ++
Sbjct: 89 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 148
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 149 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 208
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +FNSL +LV Y+
Sbjct: 209 LDSGGFYITSRTQFNSLQQLVAYY 232
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
ALYD+ + +L F++G+ + + + ++ WW + ++
Sbjct: 90 ALYDYESRTETDLSFKKGERLQIVNNTEGDWW------------------LAHSLS---- 127
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
G+ G IPSNY+ ++ +WY+G+ITR ++ERLL N G FL+R SE++ G
Sbjct: 128 --TGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 185
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
+ LSV D V+H+K+ + SG F++ +FNSL +LV Y+
Sbjct: 186 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 232
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
+A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+ ++
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 66 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +FNSL +LV Y+
Sbjct: 126 LDSGGFYITSRTQFNSLQQLVAYY 149
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
ALYD+ + +L F++G+ + + + ++ WW +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA------------------------HS 42
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
G+ G IPSNY+ ++ +WY+G+ITR ++ERLL N G FL+R SE++ G
Sbjct: 43 LSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 102
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
+ LSV D V+H+K+ + SG F++ +FNSL +LV Y+
Sbjct: 103 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 149
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
+A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+ ++
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 66 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +FNSL +LV Y+
Sbjct: 126 LDSGGFYITSRTQFNSLQQLVAYY 149
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
ALYD+ + +L F++G+ + + + ++ WW +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA------------------------HS 42
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
G+ G IPSNY+ ++ +WY+G+ITR ++ERLL N G FL+R SE++ G
Sbjct: 43 LSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 102
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
+ LSV D V+H+K+ + SG F++ +FNSL +LV Y+
Sbjct: 103 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 149
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
+A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+ ++
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 66 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +FNSL +LV Y+
Sbjct: 126 LDSGGFYITSRTQFNSLQQLVAYY 149
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
ALYD+ + +L F++G+ + + + ++ WW +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA------------------------HS 42
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
G+ G IPSNY+ ++ +WY+G+ITR ++ERLL N G FL+R SE++ G
Sbjct: 43 LSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 102
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
+ LSV D V+H+K+ + SG F++ +FNSL +LV Y+
Sbjct: 103 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 149
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH 58
MEAIAK+DF ATA+DELSF++ +LK+LN E D NWY+AEL+GK+G IP NYIEMK H
Sbjct: 10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 67
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 25/79 (31%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
A YDF EL F+RGD++ V LN E D NWY+A
Sbjct: 14 AKYDFKATADDELSFKRGDILKV-------------------------LNEECDQNWYKA 48
Query: 219 ELDGKEGLIPSNYIEMKNH 237
EL+GK+G IP NYIEMK H
Sbjct: 49 ELNGKDGFIPKNYIEMKPH 67
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
+A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+ ++
Sbjct: 7 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPSDSIQAE 66
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 67 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 126
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 127 LDSGGFYITSRTQFSSLQQLVAYY 150
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
ALYD+ + +L F++G+ + + + ++ WW +
Sbjct: 8 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA------------------------HS 43
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
G+ G IPSNY+ ++ +WY+G+ITR ++ERLL N G FL+R SE++ G
Sbjct: 44 LTTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGA 103
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
+ LSV D V+H+K+ + SG F++ +F+SL +LV Y+
Sbjct: 104 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSLQQLVAYY 150
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 17/162 (10%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI----EMKNH 58
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+ ++
Sbjct: 7 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAE 66
Query: 59 DWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
+WY+G++ R DAER LLS G FLIR SE++ G +SLS++ D V+H+K+ +
Sbjct: 67 EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 126
Query: 112 -DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
D+ G + +F +L +LV+++ R+ + R +VP
Sbjct: 127 LDNGGYYITTRAQFETLQQLVQHYS----ERAAGLSSRLVVP 164
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 40/189 (21%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 4 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 41
Query: 215 WYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER-LLS-NKHEGAFLIRVSES 268
R+ G+ G IPSNY+ ++ +WY+G++ R DAER LLS G FLIR SE+
Sbjct: 42 --RSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESET 99
Query: 269 SPGDFSLSVK-----CSDGVQHFKVLR-DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 322
+ G +SLS++ D V+H+K+ + D+ G + +F +L +LV+++ R+
Sbjct: 100 TKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYS----ERAA 155
Query: 323 DVKLRDMVP 331
+ R +VP
Sbjct: 156 GLSSRLVVP 164
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI----EMKNH 58
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+ ++
Sbjct: 8 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAE 67
Query: 59 DWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
+WY+G++ R DAER LLS G FLIR SE++ G +SLS++ D V+H+K+ +
Sbjct: 68 EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIRK 127
Query: 112 -DSSGKFFLWVVKFNSLNELVEYH 134
D+ G + +F +L +LV+++
Sbjct: 128 LDNGGYYITTRAQFETLQQLVQHY 151
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 36/171 (21%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 5 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 42
Query: 215 WYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER-LLS-NKHEGAFLIRVSES 268
R+ G+ G IPSNY+ ++ +WY+G++ R DAER LLS G FLIR SE+
Sbjct: 43 --RSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESET 100
Query: 269 SPGDFSLSVK-----CSDGVQHFKVLR-DSSGKFFLWVVKFNSLNELVEYH 313
+ G +SLS++ D V+H+K+ + D+ G + +F +L +LV+++
Sbjct: 101 TKGAYSLSIRDWDDXKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHY 151
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 28/189 (14%)
Query: 46 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 105
G + N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V
Sbjct: 1 GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60
Query: 106 HFKVLRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASV 139
H+ + S + + +F+SL L+E+++ V
Sbjct: 61 HYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPV 120
Query: 140 SRSQDVKLRDMVPEEC-LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-AR 197
SRS+ + EE V+AL+DF + +L F++GD++ + D+ ++ WW+ E +
Sbjct: 121 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK 180
Query: 198 KGLFPATYI 206
+G+ P Y+
Sbjct: 181 RGMIPVPYV 189
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 27/157 (17%)
Query: 225 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 284
G + N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V
Sbjct: 1 GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60
Query: 285 HFKVLRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASV 318
H+ + S + + +F+SL L+E+++ V
Sbjct: 61 HYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPV 120
Query: 319 SRSQDVKLRDMVPEEC-LVQALYDFTPQEPGELEFRR 354
SRS+ + EE V+AL+DF + +L F++
Sbjct: 121 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 157
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGR 64
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E R
Sbjct: 141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY-------R 193
Query: 65 ITRADAERLLSNKHEGA 81
A L+ EG+
Sbjct: 194 PASASVSALIGGNQEGS 210
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 84.0 bits (206), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
MEAIAK DF ATA+DELSF++ +LK+LN E D NWY+AEL+GK+G IP NYIEMK
Sbjct: 1 MEAIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEMK 56
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
A DF EL F+RGD++ V LN E D NWY+A
Sbjct: 5 AKVDFKATADDELSFKRGDILKV-------------------------LNEESDQNWYKA 39
Query: 219 ELDGKEGLIPSNYIEMK 235
EL+GK+G IP NYIEMK
Sbjct: 40 ELNGKDGFIPKNYIEMK 56
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 59/252 (23%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+ +
Sbjct: 3 GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 62
Query: 110 LRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASVSRSQ 143
S + + +F+SL L+E+++ VSRS+
Sbjct: 63 NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 122
Query: 144 DVKLRDMVPEEC-LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFP 202
+ EE V+AL+DF + +L F++GD++ + D+ ++ WW
Sbjct: 123 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW------------ 170
Query: 203 ATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFL 262
N ED +GK G+IP Y+E R A L+ EG+
Sbjct: 171 -----NAEDS--------EGKRGMIPVPYVEKY-------RPASASVSALIGGNQEGSHP 210
Query: 263 IRVSESSPGDFS 274
+ PG ++
Sbjct: 211 QPLGGPEPGPYA 222
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 27/153 (17%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+ +
Sbjct: 3 GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 62
Query: 289 LRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASVSRSQ 322
S + + +F+SL L+E+++ VSRS+
Sbjct: 63 NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 122
Query: 323 DVKLRDMVPEEC-LVQALYDFTPQEPGELEFRR 354
+ EE V+AL+DF + +L F++
Sbjct: 123 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 155
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 49/202 (24%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGR 64
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E R
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY-------R 191
Query: 65 ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKF 124
A L+ EG+ + PG ++ + + + + +G + V++
Sbjct: 192 PASASVSALIGGNQEGSHPQPLGGPEPGPYA-QPSVNTPLPNLQ-----NGPIYARVIQK 245
Query: 125 NSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDR 184
N Y +TA L G+++ VT
Sbjct: 246 RVPN---AYDKTA---------------------------------LALEVGELVKVTKI 269
Query: 185 SDQHWWHGEIGARKGLFPATYI 206
+ W GE ++G FP T++
Sbjct: 270 NVSGQWEGECNGKRGHFPFTHV 291
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 18/150 (12%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN---- 57
IA H + + + +L F K + L+IL E W++A+ G+EG IP N++ N
Sbjct: 16 IALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEP 73
Query: 58 HDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKV 109
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 74 EPWFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI 132
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 133 RNLDNGGFYISPRITFPGLHELVRHYTNAS 162
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 39/178 (21%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
++ LV AL+ + P G+L F +G+ + + ++S + WW +
Sbjct: 11 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQ------------------- 50
Query: 213 MNWYRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAERLL---SNKHEGAFLIRV 265
+ G+EG IP N++ N W++ ++R DAER L N H G+FLIR
Sbjct: 51 -----SLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTH-GSFLIRE 104
Query: 266 SESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
SES+ G FSLSV+ D V+H+K+ +G F++ + F L+ELV ++ AS
Sbjct: 105 SESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 162
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 18/150 (12%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN---- 57
IA H + + + +L F K + L+IL E W++A+ G+EG IP N++ N
Sbjct: 16 IALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEP 73
Query: 58 HDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKV 109
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 74 EPWFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI 132
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 133 RNLDNGGFYISPRITFPGLHELVRHYTNAS 162
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 39/178 (21%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
++ LV AL+ + P G+L F +G+ + + ++S + WW +
Sbjct: 11 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQ------------------- 50
Query: 213 MNWYRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAERLL---SNKHEGAFLIRV 265
+ G+EG IP N++ N W++ ++R DAER L N H G+FLIR
Sbjct: 51 -----SLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTH-GSFLIRE 104
Query: 266 SESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
SES+ G FSLSV+ D V+H+K+ +G F++ + F L+ELV ++ AS
Sbjct: 105 SESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 162
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 28/187 (14%)
Query: 48 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
+ N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60
Query: 108 KVLRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASVSR 141
+ S + + +F+SL L+E+++ VSR
Sbjct: 61 IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120
Query: 142 SQDVKLRDMVPEEC-LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKG 199
S+ + EE V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 180
Query: 200 LFPATYI 206
+ P Y+
Sbjct: 181 MIPVPYV 187
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 27/155 (17%)
Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
+ N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60
Query: 287 KVLRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASVSR 320
+ S + + +F+SL L+E+++ VSR
Sbjct: 61 IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120
Query: 321 SQDVKLRDMVPEEC-LVQALYDFTPQEPGELEFRR 354
S+ + EE V+AL+DF + +L F++
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 155
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 18/151 (11%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN--- 57
IA H + + + +L F K + L+IL E W++A+ G+EG IP N++ N
Sbjct: 7 VIALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAKANSLE 64
Query: 58 -HDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFK 108
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K
Sbjct: 65 PEPWFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYK 123
Query: 109 VLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+ +G F++ + F L+ELV ++ AS
Sbjct: 124 IRNLDNGGFYISPRITFPGLHELVRHYTNAS 154
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 39/175 (22%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
LV AL+ + P G+L F +G+ + + ++S + WW +
Sbjct: 6 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQ---------------------- 42
Query: 216 YRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAERLL---SNKHEGAFLIRVSES 268
+ G+EG IP N++ N W++ ++R DAER L N H G+FLIR SES
Sbjct: 43 --SLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTH-GSFLIRESES 99
Query: 269 SPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+ G FSLSV+ D V+H+K+ +G F++ + F L+ELV ++ AS
Sbjct: 100 TAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 154
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 16/162 (9%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMK 56
+A +D+ A ++LSF+K + +L E+ W++A KEG IPSNY+ ++
Sbjct: 5 VVALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYVARVDSLE 62
Query: 57 NHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHFKV 109
+W++ I+R DAER L G+F+IR SE++ G +SLSV + D V+H+K+
Sbjct: 63 TEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKI 122
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 150
+G F++ F++L ELV++++ + Q + + M
Sbjct: 123 RTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 164
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 52/228 (22%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
E+ +V ALYD+ +L F++GD + V + S + WW
Sbjct: 1 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKA-------------------- 39
Query: 213 MNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVS 266
R+ KEG IPSNY+ ++ +W++ I+R DAER L G+F+IR S
Sbjct: 40 ----RSLATRKEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDS 95
Query: 267 ESSPGDFSLSV-----KCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSR 320
E++ G +SLSV + D V+H+K+ +G F++ F++L ELV++++ +
Sbjct: 96 ETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGL 155
Query: 321 SQDVKLRDMVPEECLVQALYDFTPQEPGELEF----RRDLKIKRRKSA 364
Q + VP C+ PQ+P E + R LK++++ A
Sbjct: 156 CQKLS----VP--CMSS-----KPQKPWEKDAWEIPRESLKLEKKLGA 192
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 16/162 (9%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMK 56
+A +D+ A ++LSF+K + +L E+ W++A KEG IPSNY+ ++
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYVARVDSLE 68
Query: 57 NHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHFKV 109
+W++ I+R DAER L G+F+IR SE++ G +SLSV + D V+H+K+
Sbjct: 69 TEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKI 128
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 150
+G F++ F++L ELV++++ + Q + + M
Sbjct: 129 RTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 170
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 52/225 (23%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+V ALYD+ +L F++GD + V + S + WW
Sbjct: 10 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKA----------------------- 45
Query: 216 YRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESS 269
R+ KEG IPSNY+ ++ +W++ I+R DAER L G+F+IR SE++
Sbjct: 46 -RSLATRKEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETT 104
Query: 270 PGDFSLSV-----KCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQD 323
G +SLSV + D V+H+K+ +G F++ F++L ELV++++ + Q
Sbjct: 105 KGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQK 164
Query: 324 VKLRDMVPEECLVQALYDFTPQEPGELEF----RRDLKIKRRKSA 364
+ VP C+ PQ+P E + R LK++++ A
Sbjct: 165 LS----VP--CMSS-----KPQKPWEKDAWEIPRESLKLEKKLGA 198
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 16/162 (9%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMK 56
+A +D+ A ++LSF+K + +L E+ W++A KEG IPSNY+ ++
Sbjct: 12 VVALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYVARVDSLE 69
Query: 57 NHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHFKV 109
+W++ I+R DAER L G+F+IR SE++ G +SLSV + D V+H+K+
Sbjct: 70 TEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKI 129
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 150
+G F++ F++L ELV++++ + Q + + M
Sbjct: 130 RTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 171
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 37/195 (18%)
Query: 147 LRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+R+ E+ +V ALYD+ +L F++GD + V + S + WW A +
Sbjct: 2 IREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATR-------- 52
Query: 207 LNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER--LLSNKHEGA 260
KEG IPSNY+ ++ +W++ I+R DAER L G+
Sbjct: 53 ----------------KEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGS 96
Query: 261 FLIRVSESSPGDFSLSV-----KCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHR 314
F+IR SE++ G +SLSV + D V+H+K+ +G F++ F++L ELV++++
Sbjct: 97 FMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYK 156
Query: 315 TASVSRSQDVKLRDM 329
+ Q + + M
Sbjct: 157 KGNDGLCQKLSVPCM 171
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 76.3 bits (186), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 49 PSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 104
PSNYI ++ H WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V
Sbjct: 3 PSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRV 62
Query: 105 QHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
H+++ S GK ++ +FN+L ELV +H T +
Sbjct: 63 YHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 97
Score = 76.3 bits (186), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 228 PSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 283
PSNYI ++ H WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V
Sbjct: 3 PSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRV 62
Query: 284 QHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
H+++ S GK ++ +FN+L ELV +H T +
Sbjct: 63 YHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 97
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 74.7 bits (182), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
E VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++ R+G+FP+ Y+
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A DFN EL+F++ V+ ++N +DD NW+ +L+ + G+ PSNY+
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLIN-KDDPNWWEGQLNNRRGIFPSNYV 54
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 332 EECLVQALYDFTPQEPGELEFRR 354
E VQAL+DF PQE GEL F+R
Sbjct: 1 ETKFVQALFDFNPQESGELAFKR 23
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 74.7 bits (182), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
E VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++ R+G+FP+ Y+
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A DFN EL+F++ V+ ++N +DD NW+ +L+ + G+ PSNY+
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLIN-KDDPNWWEGQLNNRRGIFPSNYV 54
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 332 EECLVQALYDFTPQEPGELEFRR 354
E VQAL+DF PQE GEL F+R
Sbjct: 1 ETKFVQALFDFNPQESGELAFKR 23
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY G ++R +A+ L + G FL+R S + PGD+ LSV + V H+ + + +F +
Sbjct: 14 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL-----------------VQALYD 162
+F+ L L+E+++ + + ++ P + V+ LYD
Sbjct: 74 GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYD 133
Query: 163 FTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYILNMEDDMNWYRAELD 221
F + +L F++G+++ + ++ ++ WW R G+ P Y+ + R+
Sbjct: 134 FPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL------VRSSPH 187
Query: 222 GKEG 225
GK G
Sbjct: 188 GKHG 191
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
WY G ++R +A+ L + G FL+R S + PGD+ LSV + V H+ + + +F +
Sbjct: 14 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 299 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL-----------------VQALYD 341
+F+ L L+E+++ + + ++ P + V+ LYD
Sbjct: 74 GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYD 133
Query: 342 FTPQEPGELEFRR 354
F + +L F++
Sbjct: 134 FPGNDAEDLPFKK 146
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 50/205 (24%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRIT 66
+DF ++L F+K ++L I+ ++ W DG+ G+IP Y+E ++
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVE---------KLV 182
Query: 67 RADAERLLSNKHEGAFLIR-----VSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV 121
R+ N++ ++ I ++ +V S G + +G F
Sbjct: 183 RSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVF--- 239
Query: 122 VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITV 181
++ ++ R V YD T L GD++ V
Sbjct: 240 --------------------AKAIQKR--------VPCAYDKT-----ALALEVGDIVKV 266
Query: 182 TDRSDQHWWHGEIGARKGLFPATYI 206
T + W GE+ RKGLFP T++
Sbjct: 267 TRMNINGQWEGEVNGRKGLFPFTHV 291
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY G ++R +A+ L + G FL+R S + PGD+ LSV + V H+ + + +F +
Sbjct: 14 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL-----------------VQALYD 162
+F+ L L+E+++ + + ++ P + V+ LYD
Sbjct: 74 GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYD 133
Query: 163 FTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYILNMEDDMNWYRAELD 221
F + +L F++G+++ + ++ ++ WW R G+ P Y+ + R+
Sbjct: 134 FPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL------VRSSPH 187
Query: 222 GKEG 225
GK G
Sbjct: 188 GKHG 191
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
WY G ++R +A+ L + G FL+R S + PGD+ LSV + V H+ + + +F +
Sbjct: 14 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 299 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL-----------------VQALYD 341
+F+ L L+E+++ + + ++ P + V+ LYD
Sbjct: 74 GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYD 133
Query: 342 FTPQEPGELEFRR 354
F + +L F++
Sbjct: 134 FPGNDAEDLPFKK 146
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 50/205 (24%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRIT 66
+DF ++L F+K ++L I+ ++ W DG+ G+IP Y+E ++
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVE---------KLV 182
Query: 67 RADAERLLSNKHEGAFLIRVSESSPGDFSLS-----VKCSDGVQHFKVLRDSSGKFFLWV 121
R+ N++ ++ I + + V S G + +G F
Sbjct: 183 RSSPHGKHGNRNSNSYGIPEPAHAXAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVF--- 239
Query: 122 VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITV 181
++ ++ R V YD T L GD++ V
Sbjct: 240 --------------------AKAIQKR--------VPCAYDKT-----ALALEVGDIVKV 266
Query: 182 TDRSDQHWWHGEIGARKGLFPATYI 206
T + W GE+ RKGLFP T++
Sbjct: 267 TRMNINGQWEGEVNGRKGLFPFTHV 291
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 74.3 bits (181), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
E VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++ R+G+FP+ Y+
Sbjct: 3 ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
A DFN EL+F++ V+ ++N +DD NW+ +L+ + G+ PSNY+ N +
Sbjct: 9 ALFDFNPQESGELAFKRGDVITLIN-KDDPNWWEGQLNNRRGIFPSNYVAPYNSN 62
Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 332 EECLVQALYDFTPQEPGELEFRR 354
E VQAL+DF PQE GEL F+R
Sbjct: 3 ETKFVQALFDFNPQESGELAFKR 25
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 96/277 (34%)
Query: 55 MKNHDWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
MK+ W++ IT +AE LL + +G+FL R S+S+PGD +LSV+ + V H K+ +
Sbjct: 1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKI--QN 58
Query: 114 SGKFF--LWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGEL 171
+G ++ KF +L ELV+Y+ + G+L
Sbjct: 59 TGDYYDLYGGEKFATLAELVQYYM------------------------------EHHGQL 88
Query: 172 EFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN--WYRAELDGKEGLIPS 229
+ + GDVI + Y LN D + W+ L GKE
Sbjct: 89 KEKNGDVIEL----------------------KYPLNCADPTSERWFHGHLSGKE----- 121
Query: 230 NYIEMKNHDWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSD------- 281
AE+LL+ K + G+FL+R S+S PGDF LSV+ D
Sbjct: 122 -------------------AEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESND 162
Query: 282 ---GVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHR 314
V H ++R K+ + +F+SL +LVE+++
Sbjct: 163 GKSKVTHV-MIRCQELKYDVGGGERFDSLTDLVEHYK 198
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 13/99 (13%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSD----- 102
P N + + W++G ++ +AE+LL+ K + G+FL+R S+S PGDF LSV+ D
Sbjct: 101 PLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGES 160
Query: 103 -----GVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHR 135
V H ++R K+ + +F+SL +LVE+++
Sbjct: 161 NDGKSKVTHV-MIRCQELKYDVGGGERFDSLTDLVEHYK 198
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related
Kinase
Length = 121
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 55 MKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
++ W++G I RADAE+ L S GAFLIR SES GDFSLSV V+H+++ R
Sbjct: 13 LQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRL 72
Query: 113 SSGKFFLWVVK-FNSLNELVEYHRTAS 138
G FFL K F++LNE V Y+ T S
Sbjct: 73 DEGGFFLTRRKVFSTLNEFVNYYTTTS 99
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 234 MKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
++ W++G I RADAE+ L S GAFLIR SES GDFSLSV V+H+++ R
Sbjct: 13 LQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRL 72
Query: 292 SSGKFFLWVVK-FNSLNELVEYHRTAS 317
G FFL K F++LNE V Y+ T S
Sbjct: 73 DEGGFFLTRRKVFSTLNEFVNYYTTTS 99
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 71.6 bits (174), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
P N +E H WY+G ++R+ AE LLS+ G+FL+R SESSPG S+S++ V H++
Sbjct: 9 PVNSLE--KHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYR 66
Query: 109 VLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+ + GK ++ +F++L ELV +H T +
Sbjct: 67 INTTADGKVYVTAESRFSTLAELVHHHSTVA 97
Score = 71.6 bits (174), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
P N +E H WY+G ++R+ AE LLS+ G+FL+R SESSPG S+S++ V H++
Sbjct: 9 PVNSLE--KHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYR 66
Query: 288 VLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+ + GK ++ +F++L ELV +H T +
Sbjct: 67 INTTADGKVYVTAESRFSTLAELVHHHSTVA 97
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 60 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 117
WYYG++TR AE L+ + HEG FLIR SESSP DFS+S+K +HFKV L+++ +
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 64
Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQD 144
+ KF+++ ELVE+++ A + S+
Sbjct: 65 CIGQRKFSTMEELVEHYKKAPIFTSEQ 91
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 296
WYYG++TR AE L+ + HEG FLIR SESSP DFS+S+K +HFKV L+++ +
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 64
Query: 297 FLWVVKFNSLNELVEYHRTASVSRSQD 323
+ KF+++ ELVE+++ A + S+
Sbjct: 65 CIGQRKFSTMEELVEHYKKAPIFTSEQ 91
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 60 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 117
WYYG++TR AE L+ + HEG FLIR SESSP DFS+S+K +HFKV L+++ +
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 60
Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQD 144
+ KF+++ ELVE+++ A + S+
Sbjct: 61 CIGQRKFSTMEELVEHYKKAPIFTSEQ 87
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 296
WYYG++TR AE L+ + HEG FLIR SESSP DFS+S+K +HFKV L+++ +
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 60
Query: 297 FLWVVKFNSLNELVEYHRTASVSRSQD 323
+ KF+++ ELVE+++ A + S+
Sbjct: 61 CIGQRKFSTMEELVEHYKKAPIFTSEQ 87
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
++ H WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S
Sbjct: 2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 115 GKFFLWV-VKFNSLNELVEYHRTAS 138
GK ++ +FN+L ELV +H T +
Sbjct: 62 GKLYVSSESRFNTLAELVHHHSTVA 86
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
++ H WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S
Sbjct: 2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 294 GKFFLWV-VKFNSLNELVEYHRTAS 317
GK ++ +FN+L ELV +H T +
Sbjct: 62 GKLYVSSESRFNTLAELVHHHSTVA 86
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2
Domain Of C-Abl
Length = 109
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
++ H WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S
Sbjct: 6 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 65
Query: 115 GKFFLWV-VKFNSLNELVEYHRTAS 138
GK ++ +FN+L ELV +H T +
Sbjct: 66 GKLYVSSESRFNTLAELVHHHSTVA 90
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
++ H WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S
Sbjct: 6 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 65
Query: 294 GKFFLWV-VKFNSLNELVEYHRTAS 317
GK ++ +FN+L ELV +H T +
Sbjct: 66 GKLYVSSESRFNTLAELVHHHSTVA 90
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 68.9 bits (167), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
VQAL+DF PQE GEL FRRGD I V D SD +WW G + G+FP Y+
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
A DF+ + EL FR+ + +++ D NW++ G+ G+ P NY+ N
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMD-NSDPNWWKGACHGQTGMFPRNYVTAVN 58
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 336 VQALYDFTPQEPGELEFRR 354
VQAL+DF PQE GEL FRR
Sbjct: 5 VQALFDFDPQEDGELGFRR 23
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 68.6 bits (166), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
VQAL+DF PQE GEL FRRGD I V D SD +WW G + G+FP Y+
Sbjct: 3 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
A DF+ + EL FR+ + +++ D NW++ G+ G+ P NY+ N
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMD-NSDPNWWKGACHGQTGMFPRNYVTPVN 56
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 336 VQALYDFTPQEPGELEFRR 354
VQAL+DF PQE GEL FRR
Sbjct: 3 VQALFDFDPQEDGELGFRR 21
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 68.6 bits (166), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
VQAL+DF PQE GEL FRRGD I V D SD +WW G + G+FP Y+
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
A DF+ + EL FR+ + +++ D NW++ G+ G+ P NY+ N +
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMD-NSDPNWWKGACHGQTGMFPRNYVTPVNRN 60
Score = 35.4 bits (80), Expect = 0.052, Method: Composition-based stats.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 336 VQALYDFTPQEPGELEFRR 354
VQAL+DF PQE GEL FRR
Sbjct: 5 VQALFDFDPQEDGELGFRR 23
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
VQAL+DF PQE GEL FRRGD I V D SD +WW G + G+FP Y+
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
A DF+ + EL FR+ + +++ D NW++ G+ G+ P NY+ N
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMD-NSDPNWWKGACHGQTGMFPRNYVTPVN 58
Score = 35.4 bits (80), Expect = 0.056, Method: Composition-based stats.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 336 VQALYDFTPQEPGELEFRR 354
VQAL+DF PQE GEL FRR
Sbjct: 5 VQALFDFDPQEDGELGFRR 23
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 60 WYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
W++G I+R++A R L GAFLIRVSE D+ LSV+ + V+H+K+ R + G+
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 118 FL-WVVKFNSLNELVEYHRTASVS 140
L V F SL ELV YHR S+S
Sbjct: 64 HLNEAVSFLSLPELVNYHRAQSLS 87
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 239 WYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
W++G I+R++A R L GAFLIRVSE D+ LSV+ + V+H+K+ R + G+
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 297 FL-WVVKFNSLNELVEYHRTASVS 319
L V F SL ELV YHR S+S
Sbjct: 64 HLNEAVSFLSLPELVNYHRAQSLS 87
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 104/274 (37%), Gaps = 93/274 (33%)
Query: 60 WYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
W++ ++ DAE LL + G+FL R S + GDFSLSV+ D V H ++ +SG F+
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRI--QNSGDFY 61
Query: 119 --LWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
KF +L ELVEY+ Q+ G L+ R G
Sbjct: 62 DLYGGEKFATLTELVEYYT------------------------------QQQGVLQDRDG 91
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN--WYRAELDGKEGLIPSNYIEM 234
+I + Y LN D + WY + G
Sbjct: 92 TIIHL----------------------KYPLNCSDPTSERWYHGHMSG------------ 117
Query: 235 KNHDWYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSDG----VQ 284
AE LL K E FL+R S S PGDF LSV K G V
Sbjct: 118 ------------GQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVT 165
Query: 285 HFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASV 318
H KV+ + + F+SL +LVE+ + +
Sbjct: 166 HIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGI 199
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSD 102
P N + + WY+G ++ AE LL K E FL+R S S PGDF LSV K
Sbjct: 99 PLNCSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGP 158
Query: 103 G----VQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASV 139
G V H KV+ + + F+SL +LVE+ + +
Sbjct: 159 GSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGI 199
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 105/274 (38%), Gaps = 93/274 (33%)
Query: 60 WYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
W++ ++ DAE LL + G+FL R S + GDFSLSV+ D V H ++ +SG F+
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRI--QNSGDFY 61
Query: 119 --LWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
KF +L ELVEY+ Q+ G L+ R G
Sbjct: 62 DLYGGEKFATLTELVEYYT------------------------------QQQGVLQDRDG 91
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN--WYRAELDGKEGLIPSNYIEM 234
+I + Y LN D + WY + G +
Sbjct: 92 TIIHL----------------------KYPLNCSDPTSERWYHGHMSGGQ---------- 119
Query: 235 KNHDWYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSDG----VQ 284
AE LL K E FL+R S S PGDF LSV K G V
Sbjct: 120 --------------AETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVT 165
Query: 285 HFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASV 318
H KV+ + + F+SL +LVE+ + +
Sbjct: 166 HIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGI 199
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSD 102
P N + + WY+G ++ AE LL K E FL+R S S PGDF LSV K
Sbjct: 99 PLNCSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGP 158
Query: 103 G----VQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASV 139
G V H KV+ + + F+SL +LVE+ + +
Sbjct: 159 GSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGI 199
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide
From Translocated Intimin Receptor (Tir) Of Epec
Length = 102
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 59 DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGK 116
+WYYG +TR AE L+ + EG FLIR SESSP DFS+S+K S +HFKV L D+
Sbjct: 6 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV-- 63
Query: 117 FFLWVVKFNSLNELVEYHRTASVSRSQ 143
+ + +F++++ELVE+++ A + S+
Sbjct: 64 YCIGQRRFHTMDELVEHYKKAPIFTSE 90
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 238 DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGK 295
+WYYG +TR AE L+ + EG FLIR SESSP DFS+S+K S +HFKV L D+
Sbjct: 6 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV-- 63
Query: 296 FFLWVVKFNSLNELVEYHRTASVSRSQ 322
+ + +F++++ELVE+++ A + S+
Sbjct: 64 YCIGQRRFHTMDELVEHYKKAPIFTSE 90
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The
Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
Length = 98
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 59 DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGK 116
+WYYG +TR AE L+ + EG FLIR SESSP DFS+S+K S +HFKV L D+
Sbjct: 2 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV-- 59
Query: 117 FFLWVVKFNSLNELVEYHRTASVSRSQ 143
+ + +F++++ELVE+++ A + S+
Sbjct: 60 YCIGQRRFHTMDELVEHYKKAPIFTSE 86
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 238 DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGK 295
+WYYG +TR AE L+ + EG FLIR SESSP DFS+S+K S +HFKV L D+
Sbjct: 2 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV-- 59
Query: 296 FFLWVVKFNSLNELVEYHRTASVSRSQ 322
+ + +F++++ELVE+++ A + S+
Sbjct: 60 YCIGQRRFHTMDELVEHYKKAPIFTSE 86
>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide
S(Ptr)vnvqn
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
Length = 104
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++W +F+SL +LV Y+
Sbjct: 64 LDSGGFYIWSRTQFSSLQQLVAYY 87
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++W +F+SL +LV Y+
Sbjct: 64 LDSGGFYIWSRTQFSSLQQLVAYY 87
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 8/88 (9%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
++ +WY+G+ITR ++ERLL N G FL+R SE++ G +SLSV D V+H+
Sbjct: 4 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHY 63
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
K+ + SG F++ +FNSL +LV Y+
Sbjct: 64 KIRKLDSGGFYITSRTQFNSLQQLVAYY 91
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
++ +WY+G+ITR ++ERLL N G FL+R SE++ G +SLSV D V+H+
Sbjct: 4 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHY 63
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
K+ + SG F++ +FNSL +LV Y+
Sbjct: 64 KIRKLDSGGFYITSRTQFNSLQQLVAYY 91
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
W++G+ITR AERLL G FL+R S + PGD++L V C V+H++++ +S
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSID 69
Query: 120 WVVKFNSLNELVEYHRT 136
V F +L +LVE++ +
Sbjct: 70 EEVYFENLMQLVEHYTS 86
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
W++G+ITR AERLL G FL+R S + PGD++L V C V+H++++ +S
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSID 69
Query: 299 WVVKFNSLNELVEYHRT 315
V F +L +LVE++ +
Sbjct: 70 EEVYFENLMQLVEHYTS 86
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
++ +WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+
Sbjct: 4 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 63
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
K+ + SG F++ +FNSL +LV Y+
Sbjct: 64 KIRKLDSGGFYITSRTQFNSLQQLVAYY 91
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
++ +WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+
Sbjct: 4 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 63
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
K+ + SG F++ +FNSL +LV Y+
Sbjct: 64 KIRKLDSGGFYITSRTQFNSLQQLVAYY 91
>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate.
pdb|1O4F|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79073.
pdb|1O4G|A Chain A, Crystal Structure Of Sh2 In Complex With Dpi59
Length = 108
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
++ +WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+
Sbjct: 2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHY 61
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
K+ + SG F++ +FNSL +LV Y+
Sbjct: 62 KIRKLDSGGFYITSRTQFNSLQQLVAYY 89
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
++ +WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+
Sbjct: 2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHY 61
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
K+ + SG F++ +FNSL +LV Y+
Sbjct: 62 KIRKLDSGGFYITSRTQFNSLQQLVAYY 89
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 55 MKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
++ +WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+
Sbjct: 2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 61
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
K+ + SG F++ +FNSL +LV Y+
Sbjct: 62 KIRKLDSGGFYITSRTQFNSLQQLVAYY 89
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
++ +WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+
Sbjct: 2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 61
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
K+ + SG F++ +FNSL +LV Y+
Sbjct: 62 KIRKLDSGGFYITSRTQFNSLQQLVAYY 89
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 61.6 bits (148), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALYDF P+ GEL FR GD+IT+T++ D++W+ G + + G FP +Y+
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYV 65
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A +DF + EL FR+ ++ + N D+ NWY L G+ G P +Y+++
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDE-NWYEGXLHGQSGFFPLSYVQV 67
>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|1IS0|B Chain B, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|2JYQ|A Chain A, Nmr Structure Of The Apo V-Src Sh2 Domain
Length = 106
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 64 LDSGGFYITSRTQFSSLQQLVAYY 87
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++ +F+SL +LV Y+
Sbjct: 64 LDSGGFYITSRTQFSSLQQLVAYY 87
>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SHB|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SPR|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|D Chain D, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
Length = 104
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 64 LDSGGFYITSRTQFSSLQQLVAYY 87
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++ +F+SL +LV Y+
Sbjct: 64 LDSGGFYITSRTQFSSLQQLVAYY 87
>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZL|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZV|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
pdb|1NZV|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
Length = 103
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYY 86
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++ +F+SL +LV Y+
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYY 86
>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide
Complex
Length = 113
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 5 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYY 88
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 5 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++ +F+SL +LV Y+
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYY 88
>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
pdb|1P13|B Chain B, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
Length = 102
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYY 86
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++ +F+SL +LV Y+
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYY 86
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
ALY+F ++PG+L F++GDVIT+ +SD WW G ++G+FPA Y+
Sbjct: 8 ALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMN-WYRAELDGKEGLIPSNYIEM 55
A+A ++F +L+F+K V+ IL D N W+ +GKEG+ P+NY+ +
Sbjct: 6 AVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
V ALY F Q+PG+L F+ GD ITV ++D H WW G++ + G+FPA Y+
Sbjct: 20 VTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDD-MNWYRAELDGKEGLIPSNYIEMKN 57
+E A + F +L+F+ + +++ D +W+ +L G+ G+ P+NY+ M +
Sbjct: 18 IEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
W++G+ITR AERLL G FL+R S + PGD++L V V+H++++ +S
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSID 69
Query: 120 WVVKFNSLNELVEYHRT 136
V F +L +LVE++ +
Sbjct: 70 EEVYFENLMQLVEHYTS 86
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
W++G+ITR AERLL G FL+R S + PGD++L V V+H++++ +S
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSID 69
Query: 299 WVVKFNSLNELVEYHRT 315
V F +L +LVE++ +
Sbjct: 70 EEVYFENLMQLVEHYTS 86
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
ALY F +E G+L FR+GDVIT+ +SD WW G + R+G+FPA Y+
Sbjct: 8 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMN-WYRAELDGKEGLIPSNYIEM 55
+A+A + F +L FRK V+ IL D N W+ ++G+EG+ P+NY+E+
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain
pdb|4F5A|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphate Ion
pdb|4F5B|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphotyrosine
Length = 112
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
++ +WY+G+ITR ++ERLL N G FL+R SE+ G ++LSV D V+H+
Sbjct: 6 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHY 65
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
+ + SG F++ +FNSL +LV Y+
Sbjct: 66 LIRKLDSGGFYITSRTQFNSLQQLVAYY 93
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
++ +WY+G+ITR ++ERLL N G FL+R SE+ G ++LSV D V+H+
Sbjct: 6 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHY 65
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
+ + SG F++ +FNSL +LV Y+
Sbjct: 66 LIRKLDSGGFYITSRTQFNSLQQLVAYY 93
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN---- 57
+ IA +D+ A EDELSF K Q++ ++N +DD +W++ E++G GL PSNY++M
Sbjct: 20 QVIAMYDYAANNEDELSFSKGQLINVMN-KDDPDWWQGEINGVTGLFPSNYVKMTTDSDP 78
Query: 58 HDWYYGRITRADAERLLSNKHEGAF--LIRVSESSPGDFSLSVK 99
+ + D + + K +G LI+ E D L V+
Sbjct: 79 SQQWCADLQTLDTMQPIERKRQGYIHELIQTEERYMADLQLVVE 122
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
C V A+YD+ EL F +G +I V ++ D WW GEI GLFP+ Y+
Sbjct: 19 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 70
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALYDF P+ GEL F+ GD+IT+T++ D++W+ G + G FP Y+
Sbjct: 11 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A +DF E EL F++ ++ + N D+ NWY L G G P NY+E+
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDE-NWYEGMLHGHSGFFPINYVEI 61
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ IA +D+ A EDELSF K Q++ ++N +DD +W++ E++G GL PSNY++M
Sbjct: 36 QVIAMYDYAANNEDELSFSKGQLINVMN-KDDPDWWQGEINGVTGLFPSNYVKM 88
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
C V A+YD+ EL F +G +I V ++ D WW GEI GLFP+ Y+
Sbjct: 35 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALYDF P+ GEL F+ GD+IT+T++ D++W+ G + + G FP Y+
Sbjct: 15 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYV 63
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A +DF E EL F++ ++ + N D+ NWY L G+ G P NY+E+
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDE-NWYEGMLHGQSGFFPINYVEI 65
>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
Pqpyeeipi Peptide
Length = 103
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLR 111
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV V H+K+ +
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRK 62
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYY 86
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLR 290
+WY+G+ITR ++ERLL N G FL+R SE++ G + LSV V H+K+ +
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRK 62
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++ +F+SL +LV Y+
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYY 86
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
C V +YD+T Q EL F +G +I V ++ D WW GE+ + GLFP+ Y+
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV 54
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ I +D+ A +DEL+F K Q++ +LN ED +W++ E+ G+ GL PSNY+++
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDP-DWWKGEVSGQVGLFPSNYVKL 56
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALY F P+ P EL F GD+I +TD SD +WW G R GL P+ Y+
Sbjct: 11 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A + F DEL F + ++ I +M D NW++ G+ GLIPSNY+
Sbjct: 12 ALYTFEPRTPDELYFEEGDIIYITDMSD-TNWWKGTSKGRTGLIPSNYV 59
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ LYDF P+ GEL F+ GD+IT+T++ D++W+ G I G FP Y+
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYV 55
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+DF + EL F++ ++ + N D+ NWY + G+ G P NY+E+
Sbjct: 10 YDFEPENQGELGFKEGDIITLTNQIDE-NWYEGMIHGESGFFPINYVEV 57
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED---- 211
+ +ALY F P+ P EL GD+I +TD SD +WW G R GL P+ Y+ +
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAESIDN 75
Query: 212 ---------DMNWYRAELDGKEGL 226
+++W R LD + G+
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGV 99
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A + F DEL + ++ I + D NW++ G+ GLIPSNY+
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDXSD-TNWWKGTSKGRTGLIPSNYV 66
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALY F P+ P EL F GD+I +TD SD +WW G R GL P+ Y+
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A + F DEL F + ++ I +M D NW++ G+ GLIPSNY+
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSD-TNWWKGTSKGRTGLIPSNYV 55
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 50/316 (15%)
Query: 46 GLIPSNYIEMKNH-DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSD 102
G+ S + NH +++G ITR +AE L +G +L+R S + G F+LSV
Sbjct: 1 GMASSGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGR 60
Query: 103 GVQHFKVLRDSSGKFFLWVVKFN-SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY 161
H+ + R+ +G + + + + S +L YH S+ D + CL++ +
Sbjct: 61 KAHHYTIERELNGTYAIAGGRTHASPADLCHYH-----SQESDGLV-------CLLKKPF 108
Query: 162 DFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAE 219
+ PQ +P F + + Q W +G I++ + +
Sbjct: 109 N-RPQGVQPKTGPFEDLKENLIREYVKQTW------NLQGQALEQAIISQKPQL------ 155
Query: 220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV 277
E LI + E W++G+I+R ++E+ L+ +K G FLIR +++ G ++L +
Sbjct: 156 ----EKLIATTAHE--KMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCL 208
Query: 278 KCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDM-VP-EEC 334
V H+++ +D +GK + KF++L +LVE++ S D LR + VP ++
Sbjct: 209 LHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHY-----SYKADGLLRVLTVPCQKI 263
Query: 335 LVQALYDFT--PQEPG 348
Q +F PQ PG
Sbjct: 264 GTQGNVNFGGRPQLPG 279
>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain
Length = 113
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++E LL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 5 EWYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYY 88
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
+WY+G+ITR ++E LL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 5 EWYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++ +F+SL +LV Y+
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYY 88
>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted
Phosphopeptide Complex
Length = 113
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 59 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
+WY+G+ITR ++E LL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 5 EWYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
SG F++ +F+SL +LV Y+
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYY 88
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
+WY+G+ITR ++E LL N G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 5 EWYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
SG F++ +F+SL +LV Y+
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYY 88
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMK 56
E IAK++F+ TAE +L F K VL I+ + D NWY+A+ G+EG+IP+NY++ +
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 28/83 (33%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
EC+ A Y+F +L F +GDV+T I+ + D
Sbjct: 13 ECI--AKYNFHGTAEQDLPFCKGDVLT-------------------------IVAVTKDP 45
Query: 214 NWYRAELD-GKEGLIPSNYIEMK 235
NWY+A+ G+EG+IP+NY++ +
Sbjct: 46 NWYKAKNKVGREGIIPANYVQKR 68
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMK 56
E IAK++F+ TAE +L F K VL I+ + D NWY+A+ G+EG+IP+NY++ +
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 28/83 (33%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
EC+ A Y+F +L F +GDV+T I+ + D
Sbjct: 13 ECI--AKYNFHGTAEQDLPFCKGDVLT-------------------------IVAVTKDP 45
Query: 214 NWYRAELD-GKEGLIPSNYIEMK 235
NWY+A+ G+EG+IP+NY++ +
Sbjct: 46 NWYKAKNKVGREGIIPANYVQKR 68
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + PGE+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPGEVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 10/96 (10%)
Query: 55 MKNHDWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHF 107
++ +WY+G++ R DAER LLS G FLIR SE++ G +SLS++ D V+H+
Sbjct: 2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 108 KVLR-DSSGKFFLWVVKFNSLNELVEYH--RTASVS 140
K+ + D+ G + +F +L +LV+++ R A +S
Sbjct: 62 KIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLS 97
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 10/96 (10%)
Query: 234 MKNHDWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHF 286
++ +WY+G++ R DAER LLS G FLIR SE++ G +SLS++ D V+H+
Sbjct: 2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 287 KVLR-DSSGKFFLWVVKFNSLNELVEYH--RTASVS 319
K+ + D+ G + +F +L +LV+++ R A +S
Sbjct: 62 KIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLS 97
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
PS I+ + W+ G + R + LL + G +LIR + F++S+K +D V+H K
Sbjct: 13 PSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIK 72
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS 142
V+ + KF+SL ELVEY++ S+ S
Sbjct: 73 VVEKDNWIHITEAKKFDSLLELVEYYQCHSLKES 106
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
PS I+ + W+ G + R + LL + G +LIR + F++S+K +D V+H K
Sbjct: 13 PSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIK 72
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS 321
V+ + KF+SL ELVEY++ S+ S
Sbjct: 73 VVEKDNWIHITEAKKFDSLLELVEYYQCHSLKES 106
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALY F PQE +LE R GD+IT+ + S++ WW G+I R G FPA ++
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V+ALYDF E EL F+ G++ITV D SD +WW GE GLFP+ ++
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A +DF A ++EL+F+ +++ +L+ + D NW++ E GL PSN++
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLD-DSDANWWQGENHRGTGLFPSNFV 57
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+G R+G PA Y+ ++
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKLD 62
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E+ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVGDRQGFVPAAYVK 59
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 143/312 (45%), Gaps = 50/312 (16%)
Query: 50 SNYIEMKNH-DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
S + NH +++G ITR +AE L +G +L+R S + G F+LSV H
Sbjct: 4 SGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHH 63
Query: 107 FKVLRDSSGKFFLWVVKFN-SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTP 165
+ + R+ +G + + + + S +L YH S+ D + CL++ ++ P
Sbjct: 64 YTIERELNGTYAIAGGRTHASPADLCHYH-----SQESDGLV-------CLLKKPFN-RP 110
Query: 166 Q--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGK 223
Q +P F + + Q W +G I++ + +
Sbjct: 111 QGVQPKTGPFEDLKENLIREYVKQTW------NLQGQALEQAIISQKPQL---------- 154
Query: 224 EGLIPSNYIEMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSD 281
E LI + E W++G+I+R ++E+ L+ +K G FLIR +++ G ++L +
Sbjct: 155 EKLIATTAHE--KMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEG 211
Query: 282 GVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDM-VP-EECLVQA 338
V H+++ +D +GK + KF++L +LVE++ S D LR + VP ++ Q
Sbjct: 212 KVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHY-----SYKADGLLRVLTVPCQKIGTQG 266
Query: 339 LYDFT--PQEPG 348
+F PQ PG
Sbjct: 267 NVNFGGRPQLPG 278
>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine
Kinase Complexed With The 11 Residue Phosphotyrosyl
Peptide Epqpyeeipiyl
Length = 109
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 10 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 68
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 69 LDNGGFYISPRITFPGLHELVRHYTNAS 96
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 10 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 68
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+G F++ + F L+ELV ++ AS
Sbjct: 69 LDNGGFYISPRITFPGLHELVRHYTNAS 96
>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei
Peptide)
Length = 105
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 6 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 64
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 65 LDNGGFYISPRITFPGLHELVRHYTNAS 92
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 6 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 64
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+G F++ + F L+ELV ++ AS
Sbjct: 65 LDNGGFYISPRITFPGLHELVRHYTNAS 92
>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg
Peptide)
Length = 104
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 64 LDNGGFYISPRITFPGLHELVRHYTNAS 91
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+G F++ + F L+ELV ++ AS
Sbjct: 64 LDNGGFYISPRITFPGLHELVRHYTNAS 91
>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex
pdb|1BHH|A Chain A, Free P56lck Sh2 Domain
Length = 108
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 9 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 67
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 68 LDNGGFYISPRITFPGLHELVRHYTNAS 95
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 9 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 67
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+G F++ + F L+ELV ++ AS
Sbjct: 68 LDNGGFYISPRITFPGLHELVRHYTNAS 95
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V+A+YDF E EL F+ G++ITV D SD +WW GE GLFP+ ++
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A +DF A ++EL+F+ +++ +L+ + D NW++ E GL PSN++
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLD-DSDPNWWKGETHQGIGLFPSNFV 69
>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain
Length = 103
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 4 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 62
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 63 LDNGGFYISPRITFPGLHELVRHYTNAS 90
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 4 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 62
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+G F++ + F L+ELV ++ AS
Sbjct: 63 LDNGGFYISPRITFPGLHELVRHYTNAS 90
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPAEVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYV 58
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++G++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKTEVNGRQGFVPAAYVK 59
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr
Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex With
Rvipyfvplnr Peptide
Length = 109
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 55 MKNHDWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
M + W++ IT +AE LL + +G+FL R S+S+PGDF+LSV+ + V H K+ +
Sbjct: 4 MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI--QN 61
Query: 114 SGKFF--LWVVKFNSLNELVEYH 134
+G ++ KF +L ELV+Y+
Sbjct: 62 TGDYYDLYGGEKFATLAELVQYY 84
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 234 MKNHDWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
M + W++ IT +AE LL + +G+FL R S+S+PGDF+LSV+ + V H K+ +
Sbjct: 4 MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI--QN 61
Query: 293 SGKFF--LWVVKFNSLNELVEYH 313
+G ++ KF +L ELV+Y+
Sbjct: 62 TGDYYDLYGGEKFATLAELVQYY 84
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++ +
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 66
Query: 216 YRAELDG 222
R L G
Sbjct: 67 SRENLGG 73
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 LALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 96/295 (32%)
Query: 57 NHDWYYGRIT-----RADAERLLS------NKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 105
N W++G++ R AERLL+ +G+FL+R SE+ GD++LS + VQ
Sbjct: 3 NEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQ 62
Query: 106 HFKV-LRDSSG--KFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY 161
H ++ R +G KFFL + F+SL +L+ +++ VP C
Sbjct: 63 HCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQ--------------QVPLRC------ 102
Query: 162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELD 221
E E R + + T N + WY A L
Sbjct: 103 -------NEFEMRLSEPVPQT-------------------------NAHESKEWYHASL- 129
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS 280
TRA AE +L +GAFL+R + P +++S +
Sbjct: 130 -----------------------TRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAE 165
Query: 281 DGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
++H +V ++ L +F+SL +L+ Y+ + R +KLR + EE L
Sbjct: 166 GKIKHCRVQQEGQ-TVMLGNSEFDSLVDLISYYEKHPLYRK--MKLRYPINEEAL 217
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI---LNMEDD 212
V+ALYDF E EL F+ G++I V D SD +WW GE GLFP+ ++ LN+E +
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE 78
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A +DF A ++EL+F+ +++ +L+ + D NW++ E GL PSN++
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLD-DSDANWWKGENHRGIGLFPSNFV 69
>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|A Chain A, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|C Chain C, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
Length = 98
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 3 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 61
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 62 LDNGGFYISPRITFPGLHELVRHYTNAS 89
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
W++ ++R DAER L N H G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 3 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 61
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+G F++ + F L+ELV ++ AS
Sbjct: 62 LDNGGFYISPRITFPGLHELVRHYTNAS 89
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKLD 57
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++G++G +P+ Y++
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNGRQGFVPAAYVK 54
>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|C Chain C, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|E Chain E, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|G Chain G, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|I Chain I, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|K Chain K, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
Length = 254
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 125/266 (46%), Gaps = 41/266 (15%)
Query: 57 NH-DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
NH +++G ITR +AE L +G +L+R S + G F+LSV H+ + R+
Sbjct: 3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIEREL 62
Query: 114 SGKFFLWVVKFN-SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQ--EPGE 170
+G + + + + S +L YH S+ D + CL++ ++ PQ +P
Sbjct: 63 NGTYAIAGGRTHASPADLCHYH-----SQESDGLV-------CLLKKPFN-RPQGVQPKT 109
Query: 171 LEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSN 230
F + + Q W +G I++ + + E LI +
Sbjct: 110 GPFEDLKENLIREYVKQTW------NLQGQALEQAIISQKPQL----------EKLIATT 153
Query: 231 YIEMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
E W++G+I+R ++E+ L+ +K G FLIR +++ G ++L + V H+++
Sbjct: 154 AHE--KMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRI 210
Query: 289 LRDSSGKFFLW-VVKFNSLNELVEYH 313
+D +GK + KF++L +LVE++
Sbjct: 211 DKDKTGKLSIPEGKKFDTLWQLVEHY 236
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
+ALYDF E EL FR G+V+ V D S+ WW G + + GLFPA Y+ M
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A A +DF A EDEL FR +V+++L+ + +W+ L K GL P+NY+
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLD-SSNPSWWTGRLHNKLGLFPANYV 53
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 60 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
W++ ++R DAER L N H G+FLIR SES+ G F LSV+ D V+H+K+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRN 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 64 LDNGGFYISPRITFPGLHELVRHYTNAS 91
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
W++ ++R DAER L N H G+FLIR SES+ G F LSV+ D V+H+K+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRN 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+G F++ + F L+ELV ++ AS
Sbjct: 64 LDNGGFYISPRITFPGLHELVRHYTNAS 91
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 3 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 57
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + DE++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 4 VLALYDYQEKSPDEVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 60 WYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
W++ IT +AE LL + +G+FL R S+S+PGDF+LSV+ + V H K+ ++G ++
Sbjct: 4 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI--QNTGDYY 61
Query: 119 --LWVVKFNSLNELVEYH 134
KF +L ELV+Y+
Sbjct: 62 DLYGGEKFATLAELVQYY 79
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 239 WYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
W++ IT +AE LL + +G+FL R S+S+PGDF+LSV+ + V H K+ ++G ++
Sbjct: 4 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI--QNTGDYY 61
Query: 298 --LWVVKFNSLNELVEYH 313
KF +L ELV+Y+
Sbjct: 62 DLYGGEKFATLAELVQYY 79
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
+ALYDF E EL FR G+V+ V D S+ WW G + + GLFPA Y+ M
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 58
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A A +DF A EDEL FR +V+++L+ + +W+ L K GL P+NY+
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVLD-SSNPSWWTGRLHNKLGLFPANYV 55
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 96/295 (32%)
Query: 57 NHDWYYGRIT-----RADAERLLS------NKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 105
N W++G++ R AERLL+ +G+FL+R SE+ GD++LS + VQ
Sbjct: 3 NEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQ 62
Query: 106 HFKV-LRDSSG--KFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY 161
H ++ R +G KFFL + F+SL +L+ +++ VP C
Sbjct: 63 HCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQ--------------QVPLRC------ 102
Query: 162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELD 221
E E R + + T N + WY A L
Sbjct: 103 -------NEFEMRLSEPVPQT-------------------------NAHESKEWYHASL- 129
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS 280
TRA AE +L +GAFL+R + P +++S +
Sbjct: 130 -----------------------TRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAE 165
Query: 281 DGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
++H +V ++ L +F+SL +L+ Y+ + R +KLR + EE L
Sbjct: 166 GKIKHCRVQQEGQ-TVMLGNSEFDSLVDLISYYEKHPLYRK--MKLRYPINEEAL 217
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
+ALYDF E EL FR G+V+ V D S+ WW G + + GLFPA Y+ M
Sbjct: 8 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 60
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A A +DF A EDEL FR +V+++L+ + +W+ L K GL P+NY+
Sbjct: 8 ARALYDFEALEEDELGFRSGEVVEVLD-SSNPSWWTGRLHNKLGLFPANYV 57
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + DE++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPDEVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA+Y+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYV 58
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P++Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPASYVK 59
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
+ALYDF E EL FR G+V+ V D S+ WW G + + GLFPA Y+ M
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 57
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A A +DF A EDEL FR +V+++L+ + +W+ L K GL P+NY+
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLD-SSNPSWWTGRLHNKLGLFPANYV 54
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 8/104 (7%)
Query: 55 MKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHF 107
M+ +W++ I+R DAER L G+F+IR SE++ G +SLSV + D V+H+
Sbjct: 1 METEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 150
K+ +G F++ F++L ELV++++ + Q + + M
Sbjct: 61 KIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 104
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 8/104 (7%)
Query: 234 MKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHF 286
M+ +W++ I+R DAER L G+F+IR SE++ G +SLSV + D V+H+
Sbjct: 1 METEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 329
K+ +G F++ F++L ELV++++ + Q + + M
Sbjct: 61 KIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 104
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 60 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
W++ ++R DAER L N H G+FLIR SES+ G F LSV+ D V+H+K+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRN 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 64 LDNGGFYISPRITFPGLHELVRHYTNAS 91
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
W++ ++R DAER L N H G+FLIR SES+ G F LSV+ D V+H+K+
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRN 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
+G F++ + F L+ELV ++ AS
Sbjct: 64 LDNGGFYISPRITFPGLHELVRHYTNAS 91
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKLD 62
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E+ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVADRQGFVPAAYVK 59
>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras
Gtpase-Activating Protein 1
Length = 119
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 60 WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
W++G+I++ +A LL + +FL+R S+++PGD+SL + ++ +Q FK+ + +F
Sbjct: 18 WFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFM 77
Query: 119 LWVVKFNSLNELVEYHRTASV 139
+ +NS+ ++++++R +
Sbjct: 78 MGGRYYNSIGDIIDHYRKEQI 98
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 239 WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
W++G+I++ +A LL + +FL+R S+++PGD+SL + ++ +Q FK+ + +F
Sbjct: 18 WFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFM 77
Query: 298 LWVVKFNSLNELVEYHRTASV 318
+ +NS+ ++++++R +
Sbjct: 78 MGGRYYNSIGDIIDHYRKEQI 98
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
++ H WY G + RA AE +L+N+ +G FL+R +F++S+K + V+H K++ +
Sbjct: 5 DLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TA 63
Query: 114 SGKFFLWVVK-FNSLNELVEYHRTASV 139
G + + K F L ELVE+++ S+
Sbjct: 64 EGLYRITEKKAFRGLTELVEFYQQNSL 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
++ H WY G + RA AE +L+N+ +G FL+R +F++S+K + V+H K++ +
Sbjct: 5 DLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TA 63
Query: 293 SGKFFLWVVK-FNSLNELVEYHRTASV 318
G + + K F L ELVE+++ S+
Sbjct: 64 EGLYRITEKKAFRGLTELVEFYQQNSL 90
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 58 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
H WY G + RA AE +L+N+ +G FL+R +F++S+K + V+H K++ + G +
Sbjct: 26 HLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TAEGLY 84
Query: 118 FLWVVK-FNSLNELVEYHRTASV 139
+ K F L ELVE+++ S+
Sbjct: 85 RITEKKAFRGLTELVEFYQQNSL 107
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
H WY G + RA AE +L+N+ +G FL+R +F++S+K + V+H K++ + G +
Sbjct: 26 HLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TAEGLY 84
Query: 297 FLWVVK-FNSLNELVEYHRTASV 318
+ K F L ELVE+++ S+
Sbjct: 85 RITEKKAFRGLTELVEFYQQNSL 107
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 59 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
+W++G I+R DAE LL ++ G+FLIRVS S G ++LS K HF V G F
Sbjct: 17 EWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFM 75
Query: 119 L--WVVKFNSLNELVEYHRTASVSRSQDV 145
+ V SL+ LV +H+ + +++
Sbjct: 76 IPGEKVAHTSLDALVTFHQQKPIEPRREL 104
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 238 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
+W++G I+R DAE LL ++ G+FLIRVS S G ++LS K HF V G F
Sbjct: 17 EWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFM 75
Query: 298 L--WVVKFNSLNELVEYHRTASVSRSQDV 324
+ V SL+ LV +H+ + +++
Sbjct: 76 IPGEKVAHTSLDALVTFHQQKPIEPRREL 104
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 53 IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
I+ + W+ G + R + LL + G +LIR + F++S+K +D V+H KV+
Sbjct: 11 IDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK 70
Query: 113 SSGKFFLWVVKFNSLNELVEYHRTASVSRS 142
+ KF+SL ELVEY++ S+ S
Sbjct: 71 DNWIHITEAKKFDSLLELVEYYQCHSLKES 100
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 232 IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
I+ + W+ G + R + LL + G +LIR + F++S+K +D V+H KV+
Sbjct: 11 IDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK 70
Query: 292 SSGKFFLWVVKFNSLNELVEYHRTASVSRS 321
+ KF+SL ELVEY++ S+ S
Sbjct: 71 DNWIHITEAKKFDSLLELVEYYQCHSLKES 100
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYV 58
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGYVPAAYVK 59
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV LYD+ + P EL ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYL 58
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ +D+ + EL+ +K +L +LN + +W++ E++ ++G IP+ Y++
Sbjct: 9 VLVLYDYQEKSPRELTIKKGDILTLLN-STNKDWWKVEVNDRQGFIPAAYLK 59
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV LYD+ + P EL ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ +D+ + EL+ +K +L +LN + +W++ E++G++G +P+ Y++
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLN-STNKDWWKIEVNGRQGFVPAAYLK 59
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY G+I R AE +LS K +G FLIR S S G ++ SV +H + R ++G F
Sbjct: 196 WYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFA 254
Query: 120 WVVK-FNSLNELVEYHRTASVSRSQDV 145
+ SL ELV +++ AS+ + D
Sbjct: 255 EPYNLYGSLKELVLHYQHASLVQHNDA 281
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
WY G+I R AE +LS K +G FLIR S S G ++ SV +H + R ++G F
Sbjct: 196 WYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFA 254
Query: 299 WVVK-FNSLNELVEYHRTASVSRSQDV 324
+ SL ELV +++ AS+ + D
Sbjct: 255 EPYNLYGSLKELVLHYQHASLVQHNDA 281
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 117/292 (40%), Gaps = 96/292 (32%)
Query: 60 WYYGRIT-----RADAERLLS------NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
W++G++ R AERLL+ +G+FL+R SE+ GD++LS + VQH +
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCR 65
Query: 109 V-LRDSSG--KFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFT 164
+ R +G KFFL + F+SL +L+ +++ VP C
Sbjct: 66 IHSRQDAGTPKFFLTDNLVFDSLYDLITHYQ--------------QVPLRC--------- 102
Query: 165 PQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKE 224
E E R + + T N + WY A L
Sbjct: 103 ----NEFEMRLSEPVPQT-------------------------NAHESKEWYHASL---- 129
Query: 225 GLIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGV 283
TRA AE +L +GAFL+R + P +++S + +
Sbjct: 130 --------------------TRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKI 168
Query: 284 QHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
+H +V ++ L +F+SL +L+ Y+ + R +KLR + EE L
Sbjct: 169 KHCRVQQEGQ-TVMLGNSEFDSLVDLISYYEKHPLYRK--MKLRYPINEEAL 217
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 59 DWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
+WY+ +TRA AE +L +GAFL+R + P +++S + ++H +V ++
Sbjct: 123 EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQ-TV 180
Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 156
L +F+SL +L+ Y+ + R +KLR + EE L
Sbjct: 181 MLGNSEFDSLVDLISYYEKHPLYRK--MKLRYPINEEAL 217
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 60 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
++YG I+RA+AE L+ +G FL+R S G + LS+ HF + R +G +
Sbjct: 10 FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 69
Query: 118 FLWVVKFNS-LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
+ K + EL E++ SR D L + + C + PQ PG + R
Sbjct: 70 AIAGGKAHCGPAELCEFY-----SRDPD-GLPCNLRKPCNRPS--GLEPQ-PGVFDCLRD 120
Query: 177 DVITVTDRSDQHW-WHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
+ V D Q W GE + + A + E LI + E
Sbjct: 121 AM--VRDYVRQTWKLEGEALEQAIISQAPQV-----------------EKLIATTAHE-- 159
Query: 236 NHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
WY+ +TR +AER L + +G FL+R + G ++LS+ V H+ + +D +
Sbjct: 160 RMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLISQDKA 218
Query: 294 GKFFLW-VVKFNSLNELVEY 312
GK+ + KF++L +LVEY
Sbjct: 219 GKYCIPEGTKFDTLWQLVEY 238
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKKLD 62
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAGYVK 59
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 19 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 69
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++ W
Sbjct: 21 LALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVKKLAAAW 76
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV LYD+ + P EL ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYL 58
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ +D+ + EL+ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLN-STNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALY ++ EPG+L F G+ I VT + D WW G IG R G+FP+ Y+
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYV 59
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
E IA + +++ +L+F + + +IL + D W+ + + G+ PSNY++ K+
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGE--EILVTQKDGEWWTGSIGDRSGIFPSNYVKPKD 63
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMKN 57
+A +D+ A ++LSF+K + +I+N + +W+ A GK G IPSNY+ ++
Sbjct: 31 VALYDYEARTTEDLSFKKGERFQIIN-NTEGDWWEARSIATGKSGYIPSNYVVPADSIQA 89
Query: 58 HDWYYGRITRADAE 71
+WY+G++ R DAE
Sbjct: 90 EEWYFGKMGRKDAE 103
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 28/96 (29%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
ALYD+ + +L F++G+ + + ++ WW R+
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEA------------------------RS 67
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAE 250
GK G IPSNY+ ++ +WY+G++ R DAE
Sbjct: 68 IATGKSGYIPSNYVVPADSIQAEEWYFGKMGRKDAE 103
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
+ DWY+G I R +A+ LL K +G FL+R S PG++ LSV SDG + +++
Sbjct: 14 LAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVY-SDGQRRHFIIQYVD 70
Query: 115 GKFFLWVVKFNSLNELVEYHRTAS--VSRSQDVKLRDMVPEE 154
+ F+++ +L+++H T +++ V L + +P++
Sbjct: 71 NMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
+ DWY+G I R +A+ LL K +G FL+R S PG++ LSV SDG + +++
Sbjct: 14 LAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVY-SDGQRRHFIIQYVD 70
Query: 294 GKFFLWVVKFNSLNELVEYHRTAS--VSRSQDVKLRDMVPEE 333
+ F+++ +L+++H T +++ V L + +P++
Sbjct: 71 NMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 60 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
++YG I+RA+AE L+ +G FL+R S G + LS+ HF + R +G +
Sbjct: 13 FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 72
Query: 118 FLWVVKFNS-LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
+ K + EL E++ SR D L + + C + PQ PG + R
Sbjct: 73 AIAGGKAHCGPAELCEFY-----SRDPD-GLPCNLRKPCNRPS--GLEPQ-PGVFDCLRD 123
Query: 177 DVITVTDRSDQHW-WHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
+ V D Q W GE + + A + E LI + E
Sbjct: 124 AM--VRDYVRQTWKLEGEALEQAIISQAPQV-----------------EKLIATTAHE-- 162
Query: 236 NHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
WY+ +TR +AER L + +G FL+R + G ++LS+ V H+ + +D +
Sbjct: 163 RMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLISQDKA 221
Query: 294 GKFFLW-VVKFNSLNELVEY 312
GK+ + KF++L +LVEY
Sbjct: 222 GKYCIPEGTKFDTLWQLVEY 241
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
L +ALY F ++ EL +GD++ + ++ ++ WW G + +KG FPA Y+
Sbjct: 9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A + F A +DEL+ K ++ I++ + + W+ L+GK+G P+ Y+E
Sbjct: 12 ALYSFQARQDDELNLEKGDIV-IIHEKKEEGWWFGSLNGKKGHFPAAYVE 60
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
V+ALYD+ Q EL F+ GD I V + WW GE+ ++G PA Y+ ++
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
++ A +D++A DEL+F++ + I++ +D W+ EL+GK G +P+NY++
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTI-IVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
V+ALYD+ Q EL F+ GD I V + WW GE+ ++G PA Y+ ++
Sbjct: 7 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
++ A +D++A DEL+F++ + I++ +D W+ EL+GK G +P+NY++
Sbjct: 5 IQVKALYDYDAQTGDELTFKEGDTI-IVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 36/259 (13%)
Query: 60 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
++YG I+RA+AE L+ +G FL+R S G + LS+ HF + R +G +
Sbjct: 8 FFYGSISRAEAEEHLKLAGXADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 67
Query: 118 FLWVVKFNS-LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
+ K + EL E++ SR D L + + C P LE + G
Sbjct: 68 AIAGGKAHCGPAELCEFY-----SRDPD-GLPCNLRKPC----------NRPSGLEPQPG 111
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 236
+ D + + T+ L E ++ E LI + E
Sbjct: 112 VFDCLRDAXVRDYVR-----------QTWKLEGEALEQAIISQAPQVEKLIATTAHE--R 158
Query: 237 HDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
WY+ +TR +AER L + +G FL+R + G ++LS+ V H+ + +D +G
Sbjct: 159 XPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLISQDKAG 217
Query: 295 KFFLW-VVKFNSLNELVEY 312
K+ + KF++L +LVEY
Sbjct: 218 KYCIPEGTKFDTLWQLVEY 236
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
+ L+D++PQ ELE GDVI V + ++ WW G + + GLFP+ ++ +E
Sbjct: 8 KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 8 DFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
D++ EDEL V+ ++ E + W+ L+ K GL PSN++
Sbjct: 12 DYSPQNEDELELIVGDVIDVIE-EVEEGWWSGTLNNKLGLFPSNFV 56
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
LV LYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 8 LVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYL 58
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 9 VLVLYDYQEKSPREVTIKKGDILTLLN-STNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+ +
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 51
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+ +
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 51
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+ +
Sbjct: 12 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 61
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+ +
Sbjct: 12 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 61
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
LV LYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 8 LVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKKLD 62
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ +D+ + E++ +K +L +LN + +W++ E+D ++G IP+ Y++
Sbjct: 9 VLVLYDYQEKSPREVTVKKGDILTLLN-STNKDWWKVEVDDRQGFIPAAYLK 59
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A A++DF A ELS ++ ++KILN + W+R E+ G+ G PSNY+E
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 25/77 (32%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
+A YDF ++ EL + GD+I ILN + W+
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIK-------------------------ILNKKGQQGWW 42
Query: 217 RAELDGKEGLIPSNYIE 233
R E+ G+ G PSNY+E
Sbjct: 43 RGEIYGRIGWFPSNYVE 59
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
LV ALYD+ + E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 3 LVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 57
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 4 VLALYDYQEKGDSEVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY G ++R +A+ L + G FL+R S + PGD+ LSV + V H+ + + +F +
Sbjct: 21 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 80
Query: 120 WVVKFNSLNELVEYHR 135
+F+ L L+E+++
Sbjct: 81 GDQEFDHLPALLEFYK 96
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
WY G ++R +A+ L + G FL+R S + PGD+ LSV + V H+ + + +F +
Sbjct: 21 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 80
Query: 299 WVVKFNSLNELVEYHR 314
+F+ L L+E+++
Sbjct: 81 GDQEFDHLPALLEFYK 96
>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK|A Chain A, Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift
Refinement, 20 Structures
Length = 114
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 60 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVK--CSDG--VQHFKVLR-D 112
W++ I+R DAER L G+FLIR SES+ G FSLSVK + G V+H+K+ D
Sbjct: 14 WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLD 73
Query: 113 SSGKFFLWVVKFNSLNELVEYH 134
+ G + + F +L LV+++
Sbjct: 74 NGGYYISPRITFPTLQALVQHY 95
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 239 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVK--CSDG--VQHFKVLR-D 291
W++ I+R DAER L G+FLIR SES+ G FSLSVK + G V+H+K+ D
Sbjct: 14 WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLD 73
Query: 292 SSGKFFLWVVKFNSLNELVEYH 313
+ G + + F +L LV+++
Sbjct: 74 NGGYYISPRITFPTLQALVQHY 95
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V+ALY F PQ+ G+L + GD + + ++ W+ G R G+FPA Y+
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 5 AKHDFNATAEDELSFR---KSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A + F+ + +L + K Q+L+ L+ E WY+ +G+ G+ P+NY++
Sbjct: 7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPE----WYKGSCNGRTGIFPANYVK 55
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 46 GLIP-SNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD 102
GL+P +++ ++ W++ +I+R +A+RL+ + +G FL+R S+S+P F LS+
Sbjct: 13 GLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQ 72
Query: 103 GVQHFKVLR-DSSGKFFLWV----VKFNSLNELVEYHR 135
++HF+++ + G+ F + +F L +LVE+++
Sbjct: 73 KIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQ 110
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 225 GLIP-SNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD 281
GL+P +++ ++ W++ +I+R +A+RL+ + +G FL+R S+S+P F LS+
Sbjct: 13 GLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQ 72
Query: 282 GVQHFKVLR-DSSGKFFLWV----VKFNSLNELVEYHR 314
++HF+++ + G+ F + +F L +LVE+++
Sbjct: 73 KIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQ 110
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 60 WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL-RDSSGK 116
W++GRI+R +++RL+ + +G FL+R S+ +P F LS+ V+H+ +L + G+
Sbjct: 19 WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 78
Query: 117 FFLWV----VKFNSLNELVEYHR 135
+ + +F L +LVE+H+
Sbjct: 79 LYFSMDDGQTRFTDLLQLVEFHQ 101
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 239 WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL-RDSSGK 295
W++GRI+R +++RL+ + +G FL+R S+ +P F LS+ V+H+ +L + G+
Sbjct: 19 WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 78
Query: 296 FFLWV----VKFNSLNELVEYHR 314
+ + +F L +LVE+H+
Sbjct: 79 LYFSMDDGQTRFTDLLQLVEFHQ 101
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL ++ + PG+L+F +GDVI + + D++W+ GEI G+FPA+ +
Sbjct: 11 KALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 60 WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL-RDSSGK 116
W++GRI+R +++RL+ + +G FL+R S+ +P F LS+ V+H+ +L + G+
Sbjct: 16 WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 75
Query: 117 FFLWV----VKFNSLNELVEYHR 135
+ + +F L +LVE+H+
Sbjct: 76 LYFSMDDGQTRFTDLLQLVEFHQ 98
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 239 WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL-RDSSGK 295
W++GRI+R +++RL+ + +G FL+R S+ +P F LS+ V+H+ +L + G+
Sbjct: 16 WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 75
Query: 296 FFLWV----VKFNSLNELVEYHR 314
+ + +F L +LVE+H+
Sbjct: 76 LYFSMDDGQTRFTDLLQLVEFHQ 98
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI---LNMEDDM 213
+A++D EL F+ GDVI V D S++ WW G+I +G FPA+++ +N ED++
Sbjct: 14 EAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEV 72
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ A A D A EL+F+ V+K+L+ + +W+ ++D +EG P++++ +
Sbjct: 11 VSAEAVWDHVTMANRELAFKAGDVIKVLDASN-KDWWWGQIDDEEGWFPASFVRL 64
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 147 LRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ D + +V+A ++F EL F +GDVI VT + WW G + R G FP+ Y+
Sbjct: 1 MTDNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
AK +F T EDELSF K V+ + +E+ W+ L+G+ G PSNY+
Sbjct: 13 AKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTLNGRTGWFPSNYV 60
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL DF + EL FR+ D+IT+ + D+H W GE+ +G FPA ++
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFV 59
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A A DF +DEL FRK+ ++ I++ +D+ W EL+G G P+ ++E+
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWV-GELNGLRGWFPAKFVEV 61
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
+ L+++ PQ ELE + GD+I + + ++ WW G + + GLFP+ ++ +E
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE 63
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 14 EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
EDEL + ++ I N E + W+ L+ K GL PSN+++
Sbjct: 21 EDELELKVGDIIDI-NEEVEEGWWSGTLNNKLGLFPSNFVK 60
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
+ AIA +D+ A +DE+SF ++ + M DD W+R G+ GL P+NY+E++
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVELR 64
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALYD+ E+ F D+IT + D WW G R GLFPA Y+
Sbjct: 14 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
V ALYD+T EL RGD+I V + ++ WW+G IG ++G FPA ++
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
+A +D+ A DEL+ + ++++ +++ WY + G+EG P+N++
Sbjct: 10 VALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--------RKGLFPATYIL 207
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ A R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVK 67
Query: 208 NME 210
++
Sbjct: 68 KLD 70
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/60 (20%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--------KEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E+ ++G +P+ Y++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLN-STNKDWWKVEVKATANDKTYERQGFVPAAYVK 67
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
QALY + ++ L F + DVITV ++ D WW GE+ +KG FP +Y+
Sbjct: 16 QALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYV 63
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
++A A + + A ++ L+F K+ V+ +L +D W+ E+ G++G P +Y+++
Sbjct: 13 LQAQALYPWRAKKDNHLNFNKNDVITVLEQQD--MWWFGEVQGQKGWFPKSYVKL 65
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 49/202 (24%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGR 64
A DFN +++L F+K +LKI + ++ W ++DGK G+IP Y+E R
Sbjct: 6 ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEK-------CR 58
Query: 65 ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKF 124
+ A L + + + PG ++ + + +G F+ V++
Sbjct: 59 PSSASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSI------NTPLPNLQNGPFYARVIQK 112
Query: 125 NSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDR 184
N Y +TA L G+++ VT
Sbjct: 113 RVPN---AYDKTA---------------------------------LALEVGELVKVTKI 136
Query: 185 SDQHWWHGEIGARKGLFPATYI 206
+ W GE ++G FP T++
Sbjct: 137 NMSGQWEGECNGKRGHFPFTHV 158
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYI 206
V+AL+DF + +L F++GD++ + D+ ++ WW+ E + ++G+ P Y+
Sbjct: 4 VRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYV 54
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 12/105 (11%)
Query: 60 WYYGRI-TRADAERLL------SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV--- 109
W++ ++ +R AE+LL + +G FL+R SE+ P D++LS S VQH ++
Sbjct: 24 WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRST 83
Query: 110 LRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQ-DVKLRDMVP 152
+ + K++L + FNS+ L++++R A + ++ +++L D VP
Sbjct: 84 MENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPVP 128
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 12/105 (11%)
Query: 239 WYYGRI-TRADAERLL------SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV--- 288
W++ ++ +R AE+LL + +G FL+R SE+ P D++LS S VQH ++
Sbjct: 24 WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRST 83
Query: 289 LRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQ-DVKLRDMVP 331
+ + K++L + FNS+ L++++R A + ++ +++L D VP
Sbjct: 84 MENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPVP 128
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
+ A+A +D+ A +DE+SF ++ + M DD W+R G+ GL P+NY+E++
Sbjct: 11 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVELR 65
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALYD+ E+ F D+IT + D WW G R GLFPA Y+
Sbjct: 15 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
A + +T + EL FRRGDV+ + +R+ WW GE +GL P YI
Sbjct: 15 ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A+A + ELSFR+ VL+ L+ +W+R E +G GLIP YI +
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLR-LHERASSDWWRGEHNGMRGLIPHKYITL 64
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
A Y+F ++ EL R GDV+ + R DQ WW GE R G FP+TY+
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILN-MEDDMNWYRAELDGKEGLIPSNYIE 54
A+A+++F A ELS R+ V++I + + D W++ E +G+ G PS Y+E
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+A +DF Q EL ++GD++ + + DQ+W+ GE R G+FP TYI
Sbjct: 11 RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A AK DF A EL +K ++ I + D NWY E G+ G+ P YIE+
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYK-QIDQNWYEGEHHGRVGIFPRTYIEL 61
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 43 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCS 101
G G++P W +G ITR+ AE LLS +G+FL+R SES ++L V
Sbjct: 4 GSSGMVPC---------WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYR 54
Query: 102 DGVQHFKVLRDSSGKFFLWVVK------FNSLNELVEYHR 135
+ V +++L + KF + + F L++L+E+++
Sbjct: 55 NCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYK 94
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCS 280
G G++P W +G ITR+ AE LLS +G+FL+R SES ++L V
Sbjct: 4 GSSGMVPC---------WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYR 54
Query: 281 DGVQHFKVLRDSSGKFFLWVVK------FNSLNELVEYHR 314
+ V +++L + KF + + F L++L+E+++
Sbjct: 55 NCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYK 94
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
+N + +++ +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 3 NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
+ F + FNS+ EL+ ++R S+++ DVKL
Sbjct: 63 IFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 104
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
+N + +++ +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 3 NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
+ F + FNS+ EL+ ++R S+++ DVKL
Sbjct: 63 IFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 104
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
+N + +++ +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 3 NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
+ F + FNS+ EL+ ++R S+++ DVKL
Sbjct: 63 IFHRDGKYGFSDSLTFNSVVELINHYRNESLAQYNPKLDVKL 104
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
+N + +++ +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 3 NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
+ F + FNS+ EL+ ++R S+++ DVKL
Sbjct: 63 IFHRDGKYGFSDSLTFNSVVELINHYRNESLAQYNPKLDVKL 104
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 48.1 bits (113), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
+ A+A +D+ A +DE+SF ++ + M DD W+R G+ GL P+NY+E++
Sbjct: 18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVELR 72
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALYD+ E+ F D+IT + D WW G R GLFPA Y+
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ L+++ PQ ELE + GD+I + + ++ WW G + + GLFP+ ++
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 53
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 14 EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
EDEL + ++ I N E + W+ L+ K GL PSN+++
Sbjct: 15 EDELELKVGDIIDI-NEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
Q + + PQ ELE + GD+I V ++ WW G + + G+FP+ +I
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 14 EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+DEL + +++++ E + W+ L+GK G+ PSN+I+
Sbjct: 21 DDELELKVGDIIEVVG-EVEEGWWEGVLNGKTGMFPSNFIK 60
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL+D + EL F+ GDVI V D +++ WW G + +G FPA+++
Sbjct: 40 EALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
+N + ++N +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 3 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
+ F + F+S+ EL+ ++R S+++ DVKL
Sbjct: 63 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 104
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
+N + ++N +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 3 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
+ F + F+S+ EL+ ++R S+++ DVKL
Sbjct: 63 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 104
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL+D + EL F+ GDVI V D +++ WW G + +G FPA+++
Sbjct: 33 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
+N + ++N +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 2 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
+ F + F+S+ EL+ ++R S+++ DVKL
Sbjct: 62 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 103
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
+N + ++N +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 2 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
+ F + F+S+ EL+ ++R S+++ DVKL
Sbjct: 62 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 103
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 54 EMKNHD---WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
++ +HD W G R AE LL K +G FL+R S S G ++ SV V+H +
Sbjct: 294 DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVIN 352
Query: 111 RDSSGKFFLWVVK-FNSLNEL 130
+ ++G F ++SL EL
Sbjct: 353 KTATGYGFAEPYNLYSSLKEL 373
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 233 EMKNHD---WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
++ +HD W G R AE LL K +G FL+R S S G ++ SV V+H +
Sbjct: 294 DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVIN 352
Query: 290 RDSSGKFFLWVVK-FNSLNEL 309
+ ++G F ++SL EL
Sbjct: 353 KTATGYGFAEPYNLYSSLKEL 373
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+DF Q P EL ++GD++ + D++W GE R G+FPA Y+
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 6 KHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
K DF A + EL+ +K ++ I + E D NW E G+ G+ P+NY+E+
Sbjct: 7 KFDFQAQSPKELTLQKGDIVYI-HKEVDKNWLEGEHHGRLGIFPANYVEV 55
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 60 WYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSDG----VQHFKV 109
WY+G ++ AE LL K E FL+R S S PGDF LSV K G V H KV
Sbjct: 8 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 67
Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS 142
+ + + F+SL +LVE+ + + +
Sbjct: 68 MCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEA 100
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 239 WYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSDG----VQHFKV 288
WY+G ++ AE LL K E FL+R S S PGDF LSV K G V H KV
Sbjct: 8 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 67
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS 321
+ + + F+SL +LVE+ + + +
Sbjct: 68 MCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEA 100
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 60 WYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
WYY R++R +AE +L +GAFLIR E + ++++ + V+H ++ RD G+ F
Sbjct: 21 WYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINRD--GRHF 77
Query: 119 LWVVK--FNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 156
+ F SL ELV Y+ ++ R ++LR V E L
Sbjct: 78 VLGTSAYFESLVELVSYYEKHALYR--KMRLRYPVTPELL 115
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 239 WYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
WYY R++R +AE +L +GAFLIR E + ++++ + V+H ++ RD G+ F
Sbjct: 21 WYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINRD--GRHF 77
Query: 298 LWVVK--FNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
+ F SL ELV Y+ ++ R ++LR V E L
Sbjct: 78 VLGTSAYFESLVELVSYYEKHALYR--KMRLRYPVTPELL 115
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 93/211 (44%), Gaps = 39/211 (18%)
Query: 37 YRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDF 94
+ A + G + + + + + +Y+ ++R +A +LL G FL+R S S PG++
Sbjct: 20 HMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEY 78
Query: 95 SLSVKCSD---GVQHFKVLR-----DSSGKFFLWVVK--FNSLNELVEYHRTASVSRSQD 144
SL+V+ +D V H+ + R D + + + F + L+ + + ++ +
Sbjct: 79 SLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASL 138
Query: 145 VKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPAT 204
+ E +V + FT + +L F +G+ + + +++Q WW AR L
Sbjct: 139 LAAYKKPIIEVVV-GTFKFTGERETDLPFEQGERLEILSKTNQDWWE----ARNAL---- 189
Query: 205 YILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
G GL+P+NY++++
Sbjct: 190 -----------------GTTGLVPANYVQIQ 203
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
+ F E +L F + + L+IL+ + W G GL+P+NY++++
Sbjct: 151 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ 203
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 1 MEAIAKHDF----NATAEDELSFRKSQ-VLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
+ A AK F NA +L +K Q VL M + M Y+AELDG+ G +P Y+
Sbjct: 246 LPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGM--YKAELDGQIGSVPHTYL 301
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 54 EMKNHDWYYGR-----ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
E++N YYGR I+R A++LL EG++LIR S+ PG ++L+++ ++F+
Sbjct: 42 EVENRPKYYGREFHGMISREAADQLLIVA-EGSYLIRESQRQPGTYTLALRFGSQTRNFR 100
Query: 109 VLRDSSGKFFLWVVKFNSLNELV 131
+ D GK F+ +F S+++LV
Sbjct: 101 LYYD--GKHFVGEKRFESIHDLV 121
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 233 EMKNHDWYYGR-----ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
E++N YYGR I+R A++LL EG++LIR S+ PG ++L+++ ++F+
Sbjct: 42 EVENRPKYYGREFHGMISREAADQLLIVA-EGSYLIRESQRQPGTYTLALRFGSQTRNFR 100
Query: 288 VLRDSSGKFFLWVVKFNSLNELV 310
+ D GK F+ +F S+++LV
Sbjct: 101 LYYD--GKHFVGEKRFESIHDLV 121
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL+D + EL F+ GDVI V D +++ WW G + +G FPA+++
Sbjct: 70 AEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFV 119
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+DF Q P EL ++GD++ + D++W GE R G+FPA Y+
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 59
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 6 KHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
K DF A + EL+ +K ++ I + E D NW E G+ G+ P+NY+E+
Sbjct: 13 KFDFQAQSPKELTLQKGDIVYI-HKEVDKNWLEGEHHGRLGIFPANYVEV 61
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM------ED 211
+AL+DFT EL F+ GDVI + R ++ W G + G+FP +++ + +D
Sbjct: 178 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDD 237
Query: 212 DMNWYRA 218
NW R
Sbjct: 238 PTNWLRC 244
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
Q + + PQ ELE + GD+I V ++ WW G + + G+FP+ +I
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 70
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 14 EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+DEL + +++++ E + W+ L+GK G+ PSN+I+
Sbjct: 32 DDELELKVGDIIEVVG-EVEEGWWEGVLNGKTGMFPSNFIK 71
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
Query: 54 EMKNHDWYYGR-----ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
E++N YYGR I+R A+ LL EGA+++R S+ PG ++L+++ + +++
Sbjct: 46 EVENRPKYYGREFHGIISREQADELLGGV-EGAYILRESQRQPGCYTLALRFGNQTLNYR 104
Query: 109 VLRDSSGKFFLWVVKFNSLNELV 131
+ D GK F+ +F S+++LV
Sbjct: 105 LFHD--GKHFVGEKRFESIHDLV 125
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
Query: 233 EMKNHDWYYGR-----ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
E++N YYGR I+R A+ LL EGA+++R S+ PG ++L+++ + +++
Sbjct: 46 EVENRPKYYGREFHGIISREQADELLGGV-EGAYILRESQRQPGCYTLALRFGNQTLNYR 104
Query: 288 VLRDSSGKFFLWVVKFNSLNELV 310
+ D GK F+ +F S+++LV
Sbjct: 105 LFHD--GKHFVGEKRFESIHDLV 125
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIG 195
+S S +D + PEE +V ALYD+ +P EL RR + + D S+ HWW +
Sbjct: 2 SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRN 61
Query: 196 ARKGLFPATYIL 207
+G P++Y++
Sbjct: 62 GHEGYVPSSYLV 73
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 316 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
+S S +D + PEE +V ALYD+ +P EL RR+
Sbjct: 2 SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRN 41
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ +A +D+ EDELSF++ ++ ++ DD WY ++G GL P NY+E
Sbjct: 19 KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDD-GWYEGVMNGVTGLFPGNYVE 70
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V A+YD+T + EL F+ G +I V ++D W+ G + GLFP Y+
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+++ W++G+++R +AE LL + G FL+R S ++PG + L+ S +H +L D
Sbjct: 3 QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGSQSGQPKHL-LLVDP 59
Query: 114 SGKFFLWVVKFNSLNELVEYH 134
G +F S++ L+ YH
Sbjct: 60 EGVVRTKDHRFESVSHLISYH 80
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+++ W++G+++R +AE LL + G FL+R S ++PG + L+ S +H +L D
Sbjct: 3 QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGSQSGQPKHL-LLVDP 59
Query: 293 SGKFFLWVVKFNSLNELVEYH 313
G +F S++ L+ YH
Sbjct: 60 EGVVRTKDHRFESVSHLISYH 80
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIE 54
A +D++ +DELSF+ L L ED+ W R LD G+ GL P+NY+E
Sbjct: 8 ALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHWWHGEIGARK-GLFPATYI 206
V+ALYD+ QE EL F+ GD +T + + +Q W G + + + GL+PA Y+
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--------RKGLFPATYIL 207
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ A R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVK 67
Query: 208 NME 210
++
Sbjct: 68 KLD 70
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA---RKGLFPATYILNMED 211
V+ +YD EL F G+VI VT DQ WW G I RKG+FP +++ + D
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 70
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG---KEGLIPSNYIEM 55
+D A +DEL+F + +V+ I+ E+D W+ ++G ++G+ P +++ +
Sbjct: 17 YDCQADNDDELTFIEGEVI-IVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 59 DWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
+WY+ +TRA AE +L +GAFL+R + P +++S + ++H +V ++
Sbjct: 10 EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQ-TV 67
Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
L +F+SL +L+ Y+ + R +KLR + EE
Sbjct: 68 MLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEE 102
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 238 DWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
+WY+ +TRA AE +L +GAFL+R + P +++S + ++H +V ++
Sbjct: 10 EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQ-TV 67
Query: 297 FLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
L +F+SL +L+ Y+ + R +KLR + EE
Sbjct: 68 MLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEE 102
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNM 209
+C V+AL+D+ Q EL F + +I ++ + WW G+ G +K L FP+ Y+ M
Sbjct: 6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM 62
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGL-IPSNYIE 54
A D+ A EDEL+F KS +++ + ++ W+R + GK+ L PSNY+E
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEG-GWWRGDYGGKKQLWFPSNYVE 60
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ +V+A ++F EL F +GDVI VT + WW G R G FP+ Y+
Sbjct: 6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
AK +F T EDELSF K V+ + +E+ W+ +G+ G PSNY+
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTHNGRTGWFPSNYV 58
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFPATYI 206
C V+ALYD+ Q EL F G +I + ++ +Q +W GE R G+FP+ +
Sbjct: 9 CFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIE 54
A +D+ +DELSF + +++ILN E DD ++ E +G+ G+ PS +E
Sbjct: 13 ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVE 64
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
W++G+I+ +A + L +G FL+R S PGD+ L V V H++VL
Sbjct: 6 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 65
Query: 120 WVVKFNSLNELVEYH 134
V F +L ++VE++
Sbjct: 66 EAVFFCNLMDMVEHY 80
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
W++G+I+ +A + L +G FL+R S PGD+ L V V H++VL
Sbjct: 6 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 65
Query: 299 WVVKFNSLNELVEYH 313
V F +L ++VE++
Sbjct: 66 EAVFFCNLMDMVEHY 80
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA---RKGLFPATYILNMED 211
V+ +YD EL F G+VI VT DQ WW G I RKG+FP +++ + D
Sbjct: 4 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 61
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG---KEGLIPSNYIEM 55
+D A +DEL+F + +V+ I+ E+D W+ ++G ++G+ P +++ +
Sbjct: 8 YDCQADNDDELTFIEGEVI-IVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 58
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
P +V+A ++F EL F +GDVI VT + WW G R G FP+ Y+
Sbjct: 2 PLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
AK +F T EDELSF K V+ + +E+ W+ +G+ G PSNY+
Sbjct: 9 AKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTHNGRTGWFPSNYV 56
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+++ +WY+G I+R + L + +G FL+R S GD++L+++ + K+
Sbjct: 1 LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
F + FNS+ EL+ ++R S+++ DVKL
Sbjct: 61 GKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 97
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+++ +WY+G I+R + L + +G FL+R S GD++L+++ + K+
Sbjct: 1 LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
F + FNS+ EL+ ++R S+++ DVKL
Sbjct: 61 GKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 97
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 39/188 (20%)
Query: 60 WYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD---GVQHFKVLR--- 111
+Y+ ++R +A +LL G FL+R S S PG++SL+V+ +D V H+ + R
Sbjct: 14 FYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEP 72
Query: 112 --DSSGKFFLWVVK--FNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQE 167
D + + + F + L+ + + ++ + + E +V + FT +
Sbjct: 73 KEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVV-GTFKFTGER 131
Query: 168 PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLI 227
+L F +G+ + + +++Q WW AR L G GL+
Sbjct: 132 ETDLPFEQGERLEILSKTNQDWWE----ARNAL---------------------GTTGLV 166
Query: 228 PSNYIEMK 235
P+NY++++
Sbjct: 167 PANYVQIQ 174
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
+ F E +L F + + L+IL+ + W G GL+P+NY++++
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ 174
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
+N + +++ +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 2 NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
+ F + F+S+ EL+ ++R S+++ DVKL
Sbjct: 62 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 103
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
+N + +++ +WY+G I+R + L + +G FL+R S GD++L+++ + K
Sbjct: 2 NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
+ F + F+S+ EL+ ++R S+++ DVKL
Sbjct: 62 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 103
>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 108
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 56 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 112
+ W++GRI+R ++ R++ + +G FL+R S+S+P F L++ +++F++L +
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 113 SSGKFFLWV----VKFNSLNELVEYHR 135
G+ F + KF+ L +LV++++
Sbjct: 63 DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 235 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 291
+ W++GRI+R ++ R++ + +G FL+R S+S+P F L++ +++F++L +
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 292 SSGKFFLWV----VKFNSLNELVEYHR 314
G+ F + KF+ L +LV++++
Sbjct: 63 DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 9 FNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNY 52
+ T EDEL+FR+ +++ +++ E + W++ EL+GKEG+ P N+
Sbjct: 15 YTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNM 209
+ L+ +T EL FR G++I + + + WW GE+ ++G+FP + + +
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+++ W++G+++R +AE LL + G FL+R S ++PG + L+ S +H +L D
Sbjct: 3 QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHL-LLVDP 59
Query: 114 SGKFFLWVVKFNSLNELVEYH 134
G +F S++ L+ YH
Sbjct: 60 EGVVRTKDHRFESVSHLISYH 80
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+++ W++G+++R +AE LL + G FL+R S ++PG + L+ S +H +L D
Sbjct: 3 QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHL-LLVDP 59
Query: 293 SGKFFLWVVKFNSLNELVEYH 313
G +F S++ L+ YH
Sbjct: 60 EGVVRTKDHRFESVSHLISYH 80
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNM 209
V+AL+D+ Q EL F + +I ++ D WW G+ G +K L FP+ Y+ M
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 59
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGL-IPSNYIE 54
A D+ A EDEL+F KS +++ + +D W+R + GK+ L PSNY+E
Sbjct: 8 ALFDYKAQREDELTFTKSAIIQNVEKQDG-GWWRGDYGGKKQLWFPSNYVE 57
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G+ P Y+
Sbjct: 17 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 67
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E
Sbjct: 19 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 68
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G+ P Y+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYIL 207
PEE +V ALYD+ +P EL RR + + D S+ HWW + +G P++Y++
Sbjct: 6 PEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLV 62
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
PEE +V ALYD+ +P EL RR+
Sbjct: 6 PEETVVIALYDYQTNDPQELALRRN 30
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G+ P Y+
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFPAT 204
L +ALYD + P EL FR+GD++TV ++ Q WW + R+G+ P
Sbjct: 5 LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGN 56
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDM--NWYRAELDGKEGLIPSNYIEM 55
A A +D A + DELSFRK ++ +L + W+ L G++G++P N +++
Sbjct: 6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60
>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10
pdb|1NRV|B Chain B, Crystal Structure Of The Sh2 Domain Of Grb10
Length = 105
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 56 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 112
+ W++GRI+R ++ R++ + +G FL+R S+S+P F L++ +++F++L +
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 113 SSGKFFLWV----VKFNSLNELVEYHR 135
G+ F + KF+ L +LV++++
Sbjct: 63 DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 235 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 291
+ W++GRI+R ++ R++ + +G FL+R S+S+P F L++ +++F++L +
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 292 SSGKFFLWV----VKFNSLNELVEYHR 314
G+ F + KF+ L +LV++++
Sbjct: 63 DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G+ P Y+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V+AL+ + +P +LEF+ GD+I V + ++ W GE + G+FP ++
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALYD+T Q P EL+ GD++ V + WW E ++G P +Y+
Sbjct: 12 RALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A +D+ A DEL +L+++ +E + W+ E +G+ G +P +Y+E
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVI-LEGEDGWWTVERNGQRGFVPGSYLE 61
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G+ P Y+
Sbjct: 3 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 53
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E
Sbjct: 5 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 54
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--------HGEIGARKGLFPATYIL 207
LV ALYD+ + P E+ ++GD++T+ + +++ WW +G+ R+G PA Y+
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
Query: 208 NME 210
++
Sbjct: 63 KLD 65
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNM 209
V+AL+D+ Q EL F + +I ++ D WW G+ G +K L FP+ Y+ M
Sbjct: 9 VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 62
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGL-IPSNYIE 54
A D+ A EDEL+F KS +++ + +D W+R + GK+ L PSNY+E
Sbjct: 11 ALFDYKAQREDELTFTKSAIIQNVEKQDG-GWWRGDYGGKKQLWFPSNYVE 60
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--------HGEIGARKGLFPATYIL 207
LV ALYD+ + P E+ ++GD++T+ + +++ WW +G+ R+G PA Y+
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 67
Query: 208 NME 210
++
Sbjct: 68 KLD 70
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G+ P Y+
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
EAIAK +FN + E+SFRK + + +L D+ NWY + G ++G+ P Y+++
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 62
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
A ++F E+ FR+G+ IT+ + D++W+ G I +R+G+FP TY+
Sbjct: 11 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ +V+A ++F EL F +GDVI VT + WW G R G FP+ Y+
Sbjct: 6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
AK +F T EDELSF K V+ + +E+ W+ +G+ G PSNY+
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTHNGRTGWFPSNYV 58
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALY + Q+ EL F D+I + WW G + ++GLFP Y+
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
A + ++A DELSF + ++ I+ ED W+ L GK+GL P+NY+
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIK-EDPSGWWTGRLRGKQGLFPNNYV 57
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G+ P Y+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W + +GK G+IP Y+E
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+AL+DFT EL F+ GDVI + R ++ W G + G+FP +++ ++D
Sbjct: 22 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD 75
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
EAIAK +FN + E+SFRK + + +L D+ NWY + G ++G+ P Y+++
Sbjct: 9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 63
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
A ++F E+ FR+G+ IT+ + D++W+ G I +R+G+FP TY+
Sbjct: 12 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 43 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--- 98
G G + ++ ++WY+ ITR AE LL + EGAF++R S G +++SV
Sbjct: 1 GSSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHL-GSYTISVFMG 59
Query: 99 ---KCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHR 135
++H+++ ++ SG++++ F S+ EL+ YH+
Sbjct: 60 ARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQ 100
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--- 277
G G + ++ ++WY+ ITR AE LL + EGAF++R S G +++SV
Sbjct: 1 GSSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHL-GSYTISVFMG 59
Query: 278 ---KCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHR 314
++H+++ ++ SG++++ F S+ EL+ YH+
Sbjct: 60 ARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQ 100
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL+DFT EL F+ GDVI + R ++ W G + G+FP +++
Sbjct: 8 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
M A A DF ++ EL+F+ V+ +L+ + +W + G G+ P +++++
Sbjct: 5 MRAEALFDFTGNSKLELNFKAGDVIFLLS-RINKDWLEGTVRGATGIFPLSFVKI 58
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHWWHGEI-GARKGLFPATYI 206
E V+ALYD+ QE EL F+ GD +T + D +Q W G + + GL+PA Y+
Sbjct: 428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIE 54
A +D+ DELSF+ L + ED+ W + LD G+ GL P+NY+E
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVE 483
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYI 53
A + F A +ELS +Q LKIL +D + W+ AE++GK+G +PSNYI
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSD----QHWWHGEIGARKGLFPATYILNME 210
A+Y F + P EL + + + D WW E+ +KG P+ YI E
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE 73
Score = 31.6 bits (70), Expect = 0.68, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 206 ILNMED---DMNWYRAELDGKEGLIPSNYI 232
IL +D + W+ AE++GK+G +PSNYI
Sbjct: 40 ILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69
>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A
Phosphopeptidefrom The Gamma Chain Of The High Affinity
Immunoglobin G Receptor, Nmr
pdb|1CSZ|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A
Phosphopeptidefrom The Gamma Chain Of The High Affinity
Immunoglobin G Receptor, Nmr
Length = 112
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 60 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
W++G+I+R ++E+ L+ +K G FLIR +++ G ++L + V H+++ +D +GK
Sbjct: 15 WFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRIDKDKTGKL 73
Query: 118 FL-WVVKFNSLNELVEYH 134
+ KF++L +LVE++
Sbjct: 74 SIPEGKKFDTLWQLVEHY 91
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 239 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
W++G+I+R ++E+ L+ +K G FLIR +++ G ++L + V H+++ +D +GK
Sbjct: 15 WFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRIDKDKTGKL 73
Query: 297 FL-WVVKFNSLNELVEYH 313
+ KF++L +LVE++
Sbjct: 74 SIPEGKKFDTLWQLVEHY 91
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ +V+A ++F EL +GD+I VT + WW G + R G FP+ Y+
Sbjct: 10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI-EMKNHD 59
A+ +F T EDELS K ++ + +E+ W+ L+G+ G PSNY+ E+K+ +
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEG-GWWEGTLNGRTGWFPSNYVREIKSSE 69
>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|D Chain D, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
Length = 114
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 53 IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
+E+ ++ W++G ++R A +L+ + G F+IR SE+ PG+ L+ +H ++
Sbjct: 6 LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL 65
Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMV 151
+ G+ + + F S+ +++ + T + S D+ LR V
Sbjct: 66 SLNGHGQCHVQHLWFQSVFDMLRHFHTHPIPLESGGSADITLRSYV 111
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 232 IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
+E+ ++ W++G ++R A +L+ + G F+IR SE+ PG+ L+ +H ++
Sbjct: 6 LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL 65
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMV 330
+ G+ + + F S+ +++ + T + S D+ LR V
Sbjct: 66 SLNGHGQCHVQHLWFQSVFDMLRHFHTHPIPLESGGSADITLRSYV 111
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
W++G+I+ +A + L +G FL+R S PGD+ L V V H++VL
Sbjct: 7 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 66
Query: 120 WVVKFNSLNELVEYH 134
V F +L + VE++
Sbjct: 67 EAVFFCNLXDXVEHY 81
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
W++G+I+ +A + L +G FL+R S PGD+ L V V H++VL
Sbjct: 7 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 66
Query: 299 WVVKFNSLNELVEYH 313
V F +L + VE++
Sbjct: 67 EAVFFCNLXDXVEHY 81
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK--GLFPATYI 206
QALY + PQ ELE R GD++ V ++ D W+ G K G FP Y+
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 156 LVQAL--YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+V+A+ +D+ Q EL G++IT + D WW G+I R+GLFP ++
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
+EAI + D+ A +DEL+ +++ + ED W+ +++G+ GL P N++
Sbjct: 2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDG-GWWEGQINGRRGLFPDNFV 53
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK--GLFPATYI 206
QALY + PQ ELE R GD++ V ++ D W+ G K G FP Y+
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
+ ++ + Q EL + GD++T+ ++ D WW GE+ R+G+FP ++
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 9 FNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEM 55
+ A +DEL+ ++ ++ ++N + D+ W+ EL+G+ G+ P N++++
Sbjct: 16 YEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
+ ++ + Q EL + GD++T+ ++ D WW GE+ R+G+FP ++
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 9 FNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEMKNHDW 60
+ A +DEL+ ++ ++ ++N + D+ W+ EL+G+ G+ P N++++ D+
Sbjct: 18 YEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDF 70
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
E QAL +T ++ L F + D+ITV ++ ++WW GE+ +G FP +Y+
Sbjct: 9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYV 61
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
++A A + A ++ L+F K ++ +L ++ NW+ E+ G G P +Y+++
Sbjct: 11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQQE--NWWFGEVHGGRGWFPKSYVKI 63
>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A
Phosphopeptide From The Gp130 Receptor
Length = 164
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+++ +Y+ +T +A LLS + G FLIR S F+LSVK G ++ ++ +
Sbjct: 19 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI-QCE 77
Query: 114 SGKFFLW--------VVKFNSLNELVEYHRTASVSRS---QDVKLRDMVPEECLVQALYD 162
G F L V +F+ + +LV ++ + S + VPE+ QAL
Sbjct: 78 GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQPPAQALPG 137
Query: 163 FTPQ 166
TP+
Sbjct: 138 STPK 141
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+++ +Y+ +T +A LLS + G FLIR S F+LSVK G ++ ++ +
Sbjct: 19 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI-QCE 77
Query: 293 SGKFFLW--------VVKFNSLNELVEYHRTASVSRS---QDVKLRDMVPEECLVQALYD 341
G F L V +F+ + +LV ++ + S + VPE+ QAL
Sbjct: 78 GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQPPAQALPG 137
Query: 342 FTPQ 345
TP+
Sbjct: 138 STPK 141
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
+ ++ + Q EL + GD++T+ ++ D WW GE+ R+G+FP ++
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 9 FNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEM 55
+ A +DEL+ ++ ++ ++N + D+ W+ EL+G+ G+ P N++++
Sbjct: 11 YEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYIL 207
PEE LV ALYD+ +P EL R + + D S+ HWW + +G P++Y++
Sbjct: 3 PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 59
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
PEE LV ALYD+ +P EL R D
Sbjct: 3 PEETLVIALYDYQTNDPQELALRCD 27
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
+ ++ + Q EL + GD++T+ ++ D WW GE+ R+G+FP ++
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 57
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 9 FNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEM 55
+ A +DEL+ ++ ++ ++N + D+ W+ EL+G+ G+ P N++++
Sbjct: 12 YEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 59
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDR---SDQHWWHGEIGARKGLFPA 203
L +ALYD P EL F RGD++T+ ++ + WW + R+GL PA
Sbjct: 9 LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPA 59
Score = 35.4 bits (80), Expect = 0.052, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKIL--NMEDDMNWYRAELDGKEGLIPSNYIEM 55
A A +D DEL+F + +L IL ++ + W++ L G++GL P+N +++
Sbjct: 10 ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
pdb|1RPY|B Chain B, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
Length = 114
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 53 IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
+E+ ++ W++G ++R A +L+ + G F+IR SE+ PG+ L+ +H ++
Sbjct: 6 LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL 65
Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMV 151
+ G+ + + F S+ + + + T + S D+ LR V
Sbjct: 66 SLNGHGQCHVQHLWFQSVFDXLRHFHTHPIPLESGGSADITLRSYV 111
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 232 IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
+E+ ++ W++G ++R A +L+ + G F+IR SE+ PG+ L+ +H ++
Sbjct: 6 LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL 65
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMV 330
+ G+ + + F S+ + + + T + S D+ LR V
Sbjct: 66 SLNGHGQCHVQHLWFQSVFDXLRHFHTHPIPLESGGSADITLRSYV 111
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYIL 207
PEE LV ALYD+ +P EL R + + D S+ HWW + +G P++Y++
Sbjct: 3 PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 59
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
PEE LV ALYD+ +P EL R D
Sbjct: 3 PEETLVIALYDYQTNDPQELALRCD 27
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYILNMED 211
V ALYD+ P +L+ R+GD + + S+ WW + ++G P+ Y+ ED
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED 66
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYI 53
+ +A +D+ ++L RK IL E ++ W+RA + +G+EG IPSNY+
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILE-ESNLPWWRARDKNGQEGYIPSNYV 61
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein
States By Relaxation Dispersion Nmr
Length = 62
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAEL--DGKEGLIPSNYIEMKN 57
A A++D++A ++EL+F ++ KI+N+E D +W+ EL DG +GL PSNY+ + N
Sbjct: 7 ATAEYDYDAAEDNELTFVEND--KIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 62
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
A YD+ E EL F D I + D WW GE+ KGLFP+ Y+
Sbjct: 9 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average
Structure
Length = 77
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYIL 207
PEE LV ALYD+ +P EL R + + D S+ HWW + +G P++Y++
Sbjct: 18 PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
PEE LV ALYD+ +P EL R D
Sbjct: 18 PEETLVIALYDYQTNDPQELALRCD 42
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALY F EP EL+F GD I + + W G + R G+FP ++
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFV 65
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 19 VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ +L F +G+ + + S+ WW
Sbjct: 16 TLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 53
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 54 --RSLTTGETGYIPSNYV 69
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYILNME 210
E+ +V ALYD+ P +L F++GD + V + S + W + RK G P+ Y+ ++
Sbjct: 2 EDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
+A +D+ + + D+LSF+K + +L E+ W++A KEG IPSNY+
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYV 56
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 19 VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 24/77 (31%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
L ALYD+ +L F +G+ + + S+ WW
Sbjct: 17 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEA----------------------- 53
Query: 216 YRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 54 -RSLTTGETGYIPSNYV 69
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 4 VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ +L F +G+ + + S+ WW
Sbjct: 1 ALFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 38
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 39 --RSLTTGETGYIPSNYV 54
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 168 PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 45
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 16 ELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 5 EVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 42
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 9 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 6 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 43
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 44 --RSLTTGETGYIPSNYV 59
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 8 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 5 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 42
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 43 --RSLTTGETGYIPSNYV 58
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 5 VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ +L F +G+ + + S+ WW
Sbjct: 2 TLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 39
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 40 --RSLTTGETGYIPSNYV 55
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 9 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 6 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 43
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 44 --RSLTTGETGYIPSNYV 59
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 7 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 4 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 41
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 42 --RSLTTGETGYIPSNYV 57
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAEL--DGKEGLIPSNYIEMKN 57
A A++D++A ++EL+F ++ KI+N+E D +W+ EL DG +GL PSNY+ + N
Sbjct: 4 ATAEYDYDAAEDNELTFVEND--KIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 59
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
A YD+ E EL F D I + D WW GE+ KGLFP+ Y+
Sbjct: 6 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 4 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 1 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 38
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 39 --RSLTTGETGYIPSNYV 54
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 5 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 2 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 39
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 40 --RSLTTGETGYIPSNYV 55
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYILNME 210
E+ +V ALYD+ P +L F++GD + V + S + W + RK G P+ Y+ ++
Sbjct: 2 EDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
+A +D+ + + D+LSF+K + +L E+ W++A KEG IPSNY+
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYV 56
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+ A ED+LSF K + +ILN + W R+ G+ G IPSNY+
Sbjct: 5 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ + +L F +G+ + + S+ WW
Sbjct: 2 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 39
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 40 --RSLTTGETGYIPSNYV 55
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAEL--DGKEGLIPSNYIEMKN 57
A A++D++A ++EL+F ++ KI+N+E D +W+ EL DG +GL PSNY+ + N
Sbjct: 3 ATAEYDYDAAEDNELTFVEND--KIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
A YD+ E EL F D I + D WW GE+ KGLFP+ Y+
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 168 PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 5 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 47
Score = 32.3 bits (72), Expect = 0.50, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 11 ATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 2 AMGPREVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 44
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 55 MKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
+ + W++G ++R A +L+ G FL+R SE+ G+ L+ +H ++
Sbjct: 6 LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSL 65
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMVP 152
+++G+ + + F S+ +++E+ R + S DV L VP
Sbjct: 66 NAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 234 MKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
+ + W++G ++R A +L+ G FL+R SE+ G+ L+ +H ++
Sbjct: 6 LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSL 65
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMVP 331
+++G+ + + F S+ +++E+ R + S DV L VP
Sbjct: 66 NAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
+A+YD++ Q+ E+ FR GD I D W +G + R G+ PA YI
Sbjct: 10 RAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 5 AKHDFNATAEDELSFRKSQ-VLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
A +D++A EDE+SFR ++ + ++D + + G+ G++P+NYIE N
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN 64
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 54 EMKNHD---WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
++ +HD W G R AE LL K +G FL+R S S G ++ SV V+H +
Sbjct: 3 DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVIN 61
Query: 111 RDSSGKFFLWVVK-FNSLNELVEYHRTASVSRSQD 144
+ ++G F ++SL ELV +++ S+ + D
Sbjct: 62 KTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHND 96
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 233 EMKNHD---WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
++ +HD W G R AE LL K +G FL+R S S G ++ SV V+H +
Sbjct: 3 DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVIN 61
Query: 290 RDSSGKFFLWVVK-FNSLNELVEYHRTASVSRSQD 323
+ ++G F ++SL ELV +++ S+ + D
Sbjct: 62 KTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHND 96
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
E+ WY+G +T +A+ L EG FLIR S S ++SVK S G + ++
Sbjct: 13 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRI-EYQ 71
Query: 114 SGKFFLWVV--------KFNSLNELVEYH 134
GKF L + +F+S+ L++Y+
Sbjct: 72 DGKFRLDSIICVKSKLKQFDSVVHLIDYY 100
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
E+ WY+G +T +A+ L EG FLIR S S ++SVK S G + ++
Sbjct: 13 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRI-EYQ 71
Query: 293 SGKFFLWVV--------KFNSLNELVEYH 313
GKF L + +F+S+ L++Y+
Sbjct: 72 DGKFRLDSIICVKSKLKQFDSVVHLIDYY 100
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85
Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase:
An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 54 EMKNHD---WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
++ +HD W G R AE LL K +G FL+R S S G ++ SV V+H +
Sbjct: 2 DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVIN 60
Query: 111 RDSSGKFFLWVVK-FNSLNELVEYHRTASVSRSQD 144
+ ++G F ++SL ELV +++ S+ + D
Sbjct: 61 KTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHND 95
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 233 EMKNHD---WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
++ +HD W G R AE LL K +G FL+R S S G ++ SV V+H +
Sbjct: 2 DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVIN 60
Query: 290 RDSSGKFFLWVVK-FNSLNELVEYHRTASVSRSQD 323
+ ++G F ++SL ELV +++ S+ + D
Sbjct: 61 KTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHND 95
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse
Peroxisomal Biogenesis Factor 13
Length = 93
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDD---MNWYRAELDGK-EGLIPSNYIEM 55
A A++DF A +++E+SFR +L + E W A LDG+ GLIP+NY+++
Sbjct: 20 ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKI 76
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 23/83 (27%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
+ + +A YDF E+ FR GD++ + + Q G
Sbjct: 16 DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRG-------------------- 55
Query: 213 MNWYRAELDGK-EGLIPSNYIEM 234
W A LDG+ GLIP+NY+++
Sbjct: 56 --WLLASLDGQTTGLIPANYVKI 76
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
Length = 62
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI 194
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 33/53 (62%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
++ I ++D++A +DEL+ R ++++ + + W EL+G+ G+ P N++
Sbjct: 1 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 53
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 161 YDFTPQEPGELEFRRGDVI-TVTDRSDQHWWHGEIGARKGLFPATYI 206
YD+ EL R G++I V ++ W GE+ R+G+FP ++
Sbjct: 7 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 53
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 23/79 (29%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
++ AL+D+ PQ EL + GD +T+ R D ED++ W
Sbjct: 172 VIYALWDYEPQNDDELPMKEGDCMTIIHRED-----------------------EDEIEW 208
Query: 216 YRAELDGKEGLIPSNYIEM 234
+ A L+ KEG +P N + +
Sbjct: 209 WWARLNDKEGYVPRNLLGL 227
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 8 DFNATAEDELSFRKSQVLKILNMEDD--MNWYRAELDGKEGLIPSNYIEM 55
D+ +DEL ++ + I++ ED+ + W+ A L+ KEG +P N + +
Sbjct: 178 DYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 33/53 (62%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
++ I ++D++A +DEL+ R ++++ + + W EL+G+ G+ P N++
Sbjct: 2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 161 YDFTPQEPGELEFRRGDVI-TVTDRSDQHWWHGEIGARKGLFPATYI 206
YD+ EL R G++I V ++ W GE+ R+G+FP ++
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 23/79 (29%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
++ AL+D+ PQ EL + GD +T+ R D ED++ W
Sbjct: 172 VIYALWDYEPQNDDELPMKEGDCMTIIHRED-----------------------EDEIEW 208
Query: 216 YRAELDGKEGLIPSNYIEM 234
+ A L+ KEG +P N + +
Sbjct: 209 WWARLNDKEGYVPRNLLGL 227
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 8 DFNATAEDELSFRKSQVLKILNMEDD--MNWYRAELDGKEGLIPSNYIEM 55
D+ +DEL ++ + I++ ED+ + W+ A L+ KEG +P N + +
Sbjct: 178 DYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain
Length = 118
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 18/99 (18%)
Query: 49 PSNYIEMKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ-- 105
P+N ++ ++WY I+R AE+ LL EGAF++R S +PG +++SV +
Sbjct: 3 PNN---LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISEN 58
Query: 106 ------HFKVLRDSSGKFFL---WVVKFNSLNELVEYHR 135
H K DS ++++ +V F+S+ L++YH+
Sbjct: 59 PCIKHYHIKETNDSPKRYYVAEKYV--FDSIPLLIQYHQ 95
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 18/99 (18%)
Query: 228 PSNYIEMKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ-- 284
P+N ++ ++WY I+R AE+ LL EGAF++R S +PG +++SV +
Sbjct: 3 PNN---LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISEN 58
Query: 285 ------HFKVLRDSSGKFFL---WVVKFNSLNELVEYHR 314
H K DS ++++ +V F+S+ L++YH+
Sbjct: 59 PCIKHYHIKETNDSPKRYYVAEKYV--FDSIPLLIQYHQ 95
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With
A Herpesviral Ligand
Length = 65
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN 57
+A + ++ D+LSF+K + +K+L E+ W++A+ L KEG IPSNY+ N
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKMKVL--EEHGEWWKAKSLLTKKEGFIPSNYVAKLN 64
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 31/89 (34%)
Query: 152 PEEC--LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
PEE +V ALY + P +L F++G+ + V + HGE
Sbjct: 3 PEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEE------HGE---------------- 40
Query: 210 EDDMNWYRAE--LDGKEGLIPSNYIEMKN 236
W++A+ L KEG IPSNY+ N
Sbjct: 41 -----WWKAKSLLTKKEGFIPSNYVAKLN 64
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
E IA DF A +L+F+K ++L ++ + D W + G EGL+P Y+E
Sbjct: 12 EYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYI 206
A+ DFT Q+ G+L F++G+++ V ++ WW + +GL P TY+
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYL 63
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR-KGLFPATYI 206
V+ALYD+ + EL F RG +I + WW G+ G R + FP+ Y+
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMKN 57
+AK D+ A E EL +K++ L +L +D +W+R K G +PSNY+E KN
Sbjct: 11 VAKFDYVAQQEQELDIKKNERLWLL--DDSKSWWRVRNSMNKTGFVPSNYVERKN 63
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 26/86 (30%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
+ EE +V A +D+ Q+ EL+ ++ + + + D S + WW +
Sbjct: 4 MAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDS-KSWWR-----------------VR 45
Query: 211 DDMNWYRAELDGKEGLIPSNYIEMKN 236
+ MN K G +PSNY+E KN
Sbjct: 46 NSMN--------KTGFVPSNYVERKN 63
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
I ++DF A ++DEL+ + + IL+ + +W+ +L GK GL+P+ +IE
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 161 YDFTPQEPGELEFRRGD-VITVTDRSDQHWWHGEI--GARKGLFPATYILNMED 211
YDF + EL + GD V + D+ + WW ++ + GL PA +I + D
Sbjct: 13 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRD 66
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMKN 57
+AK D+ A E EL +K++ L +L +D +W+R K G +PSNY+E KN
Sbjct: 9 VVAKFDYVAQQEQELDIKKNERLWLL--DDSKSWWRVRNSMNKTGFVPSNYVERKN 62
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 26/86 (30%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
+ EE +V A +D+ Q+ EL+ ++ + + + D S + WW +
Sbjct: 3 MAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDS-KSWWR-----------------VR 44
Query: 211 DDMNWYRAELDGKEGLIPSNYIEMKN 236
+ MN K G +PSNY+E KN
Sbjct: 45 NSMN--------KTGFVPSNYVERKN 62
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its
Relationship To Sh2 In The Sh(32) Construct, 20
Structures
Length = 62
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 58
>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|B Chain B, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 110
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 15/93 (16%)
Query: 55 MKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ-------- 105
++ ++WY I+R AE+ LL EGAF++R S +PG +++SV +
Sbjct: 5 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 63
Query: 106 HFKVLRDSSGKFFL---WVVKFNSLNELVEYHR 135
H K DS ++++ +V F+S+ L++YH+
Sbjct: 64 HIKETNDSPKRYYVAEKYV--FDSIPLLIQYHQ 94
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 15/93 (16%)
Query: 234 MKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ-------- 284
++ ++WY I+R AE+ LL EGAF++R S +PG +++SV +
Sbjct: 5 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 63
Query: 285 HFKVLRDSSGKFFL---WVVKFNSLNELVEYHR 314
H K DS ++++ +V F+S+ L++YH+
Sbjct: 64 HIKETNDSPKRYYVAEKYV--FDSIPLLIQYHQ 94
>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform,
Ensemble Of 20 Low Energy Structures
pdb|1LUK|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287cis, Energy
Minimized Average Structure
pdb|1LUM|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, 20 Low
Energy Structures
pdb|1LUN|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, Energy
Minimized Average Structure
Length = 110
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 15/93 (16%)
Query: 55 MKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ-------- 105
++ ++WY I+R AE+ LL EGAF++R S +PG +++SV +
Sbjct: 4 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 62
Query: 106 HFKVLRDSSGKFFL---WVVKFNSLNELVEYHR 135
H K DS ++++ +V F+S+ L++YH+
Sbjct: 63 HIKETNDSPKRYYVAEKYV--FDSIPLLIQYHQ 93
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 15/93 (16%)
Query: 234 MKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ-------- 284
++ ++WY I+R AE+ LL EGAF++R S +PG +++SV +
Sbjct: 4 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 62
Query: 285 HFKVLRDSSGKFFL---WVVKFNSLNELVEYHR 314
H K DS ++++ +V F+S+ L++YH+
Sbjct: 63 HIKETNDSPKRYYVAEKYV--FDSIPLLIQYHQ 93
>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2 Domain
Bound To A Phosphopeptide
pdb|2EU0|A Chain A, The Nmr Ensemble Structure Of The Itk Sh2 Domain Bound To
A Phosphopeptide
Length = 109
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 15/93 (16%)
Query: 55 MKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ-------- 105
++ ++WY I+R AE+ LL EGAF++R S +PG +++SV +
Sbjct: 4 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 62
Query: 106 HFKVLRDSSGKFFL---WVVKFNSLNELVEYHR 135
H K DS ++++ +V F+S+ L++YH+
Sbjct: 63 HIKETNDSPKRYYVAEKYV--FDSIPLLIQYHQ 93
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 15/93 (16%)
Query: 234 MKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ-------- 284
++ ++WY I+R AE+ LL EGAF++R S +PG +++SV +
Sbjct: 4 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 62
Query: 285 HFKVLRDSSGKFFL---WVVKFNSLNELVEYHR 314
H K DS ++++ +V F+S+ L++YH+
Sbjct: 63 HIKETNDSPKRYYVAEKYV--FDSIPLLIQYHQ 93
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 32/82 (39%)
Query: 159 ALYDFTPQEP-------GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
ALYD+ P+E EL F GD+ITV GEI D
Sbjct: 12 ALYDYDPRESSPNVDVEAELTFCTGDIITV---------FGEI----------------D 46
Query: 212 DMNWYRAELDGKEGLIPSNYIE 233
+ +Y EL+G++GL+PSN++E
Sbjct: 47 EDGFYYGELNGQKGLVPSNFLE 68
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 10 NATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
N E EL+F ++ + D+ +Y EL+G++GL+PSN++E
Sbjct: 24 NVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI N
Sbjct: 4 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI N
Sbjct: 8 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 61
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYI 53
M +A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+
Sbjct: 1 MTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--HGEIGARKGLFPATYI 206
ALYD+ + +L F++G+ + + + ++ WW H R G P+ Y+
Sbjct: 5 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 170 ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 55
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 16 ELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 15 EVTMKKGDILTLLN-STNKDWWKVEVNDRQGFVPAAYVK 52
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI N
Sbjct: 6 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 59
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal Structure
At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 55 MKNHD---WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
+ +HD W G R AE LL K +G FL+R S S G ++ SV V+H + +
Sbjct: 4 IPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINK 62
Query: 112 DSSGKFFLWVVK-FNSLNELVEYHRTASVSRSQD 144
++G F ++SL ELV +++ S+ + D
Sbjct: 63 TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHND 96
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 234 MKNHD---WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
+ +HD W G R AE LL K +G FL+R S S G ++ SV V+H + +
Sbjct: 4 IPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINK 62
Query: 291 DSSGKFFLWVVK-FNSLNELVEYHRTASVSRSQD 323
++G F ++SL ELV +++ S+ + D
Sbjct: 63 TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHND 96
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYILNME 210
V ALYD+ P +L+ R+GD + + S+ WW + ++G P+ Y+ E
Sbjct: 4 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 58
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYI 53
+ +A +D+ ++L RK IL E ++ W+RA + +G+EG IPSNY+
Sbjct: 3 KVVALYDYMPMNANDLQLRKGDEYFILE-ESNLPWWRARDKNGQEGYIPSNYV 54
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+EAIAK D+ ELSF+K L + D +W+ +G +GLIP YI +++
Sbjct: 10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASD-DWWEGRHNGIDGLIPHQYIVVQD 65
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL 207
A +D+ + EL F++G + + R+ WW G GL P YI+
Sbjct: 14 AKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIV 62
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM 55
EA+A++ F E ELSFRK + + ++ ++ NWY + G++G+ P++Y+++
Sbjct: 19 EAVAQYTFKGDLEVELSFRKGEHICLIRKVNE-NWYEGRITGTGRQGIFPASYVQV 73
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
A Y F EL FR+G+ I + + +++W+ G I R+G+FPA+Y+
Sbjct: 22 AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 71
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 152 PEECLVQ---ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
PE ++Q A+ D+ E+ GDV+ V ++S+ WW ++ A++G PA+++
Sbjct: 6 PEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
AIA D+ T+ E++ V++++ + + W+ ++ K G IP++++E
Sbjct: 16 AIA--DYEKTSGSEMALSTGDVVEVVE-KSESGWWFCQMKAKRGWIPASFLE 64
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYI 53
+A +D+NAT +LSF K + +IL+ D +W+ R+ G+ G IPSNY+
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILD-GDSGDWWEARSLTTGETGYIPSNYV 60
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ +L F +G+ + D WW
Sbjct: 7 TLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEA---------------------- 44
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 45 --RSLTTGETGYIPSNYV 60
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine
Kinase
Length = 125
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 53 IEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQ 105
IEM ++WY +TR+ AE+LL + EG F++R S S G +++SV ++
Sbjct: 8 IEM--YEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIR 64
Query: 106 HFKVLRDSSGKFFLWVVK-FNSLNELVEYHRTAS 138
H+ V +++L F+++ EL+ YH+ S
Sbjct: 65 HYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNS 98
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 232 IEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQ 284
IEM ++WY +TR+ AE+LL + EG F++R S S G +++SV ++
Sbjct: 8 IEM--YEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIR 64
Query: 285 HFKVLRDSSGKFFLWVVK-FNSLNELVEYHRTAS 317
H+ V +++L F+++ EL+ YH+ S
Sbjct: 65 HYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNS 98
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIEMK 56
+A +DF AT +L + Q IL ++D++W+RA + G EG IPSNY+ K
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILE-KNDLHWWRARDKYGSEGYIPSNYVTGK 58
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 25/80 (31%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+V A+YDF E +L RG + +++D HWW AR
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWR----ARDKY--------------- 44
Query: 216 YRAELDGKEGLIPSNYIEMK 235
G EG IPSNY+ K
Sbjct: 45 ------GSEGYIPSNYVTGK 58
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 8 DFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIEM 55
D++A DELSFR+ + + +L + ++ +W+ A L G+EG +P NY +
Sbjct: 162 DYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGL 211
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 23/78 (29%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
V AL+D++ + EL FR G+ +TV R + ++ +W+
Sbjct: 157 VYALWDYSAEFGDELSFREGESVTVLRR-----------------------DGPEETDWW 193
Query: 217 RAELDGKEGLIPSNYIEM 234
A L G+EG +P NY +
Sbjct: 194 WAALHGQEGYVPRNYFGL 211
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
I ++DF A ++DEL+ + + IL+ + +W+ +L GK GL+P+ +IE
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGD-VITVTDRSDQHWWHGEI--GARKGLFPATYI 206
E +VQ YDF + EL + GD V + D+ + WW ++ + GL PA +I
Sbjct: 3 ERGIVQ--YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 152 PEECLVQ---ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
PE ++Q A+ D+ E+ GDV+ V ++S+ WW ++ A++G PA+++
Sbjct: 6 PEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A D+ T+ E++ V++++ + + W+ ++ K G IP++++E
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVE-KSESGWWFCQMKAKRGWIPASFLE 64
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
++ WY+G ITR +AE L+N +G+FL+R S SLS + H ++ S
Sbjct: 20 KLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI-EHS 78
Query: 114 SGKFFLW----VVKFNSLNELVEY 133
+G+F + V S+ +L+E+
Sbjct: 79 NGRFSFYEQPDVEGHTSIVDLIEH 102
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
++ WY+G ITR +AE L+N +G+FL+R S SLS + H ++ S
Sbjct: 20 KLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI-EHS 78
Query: 293 SGKFFLW----VVKFNSLNELVEY 312
+G+F + V S+ +L+E+
Sbjct: 79 NGRFSFYEQPDVEGHTSIVDLIEH 102
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+A+ D+ E+ GDV+ V ++S+ WW ++ A++G PA+++
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A D+ T+ E++ V++++ + + W+ ++ K G IP++++E
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVE-KSESGWWFCQMKAKRGWIPASFLE 64
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI 53
+A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--HGEIGARKGLFPATYI 206
ALYD+ + +L F++G+ + + + ++ WW H + G P+ Y+
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
+ +A+YD+ + E+ F+ GD I D+ W +G + R G+ PA Y+
Sbjct: 5 IFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELD--GKEGLIPSNYIE 54
A +D+ A DE+SF+ I+N++ D W + G+ G++P+NY+E
Sbjct: 8 AMYDYMAADADEVSFKDGDA--IINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYI 53
+A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+
Sbjct: 11 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--HGEIGARKGLFPATYI 206
ALYD+ + +L F++G+ + + + ++ WW H + G P+ Y+
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--HGEIGARKGLFPATYILNMEDDM 213
ALYDF P+ EL GD++ ++ + Q W E G++ GL P ++ ++ ++
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPEL 66
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
+A +D+ A ++LSF+K + +I+N + +W+ A GK G IPSNY+
Sbjct: 9 VALYDYEARTTEDLSFKKGERFQIIN-NTEGDWWEARSIATGKNGYIPSNYV 59
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 24/74 (32%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
ALYD+ + +L F++G+ + + ++ WW R+
Sbjct: 10 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEA------------------------RS 45
Query: 219 ELDGKEGLIPSNYI 232
GK G IPSNY+
Sbjct: 46 IATGKNGYIPSNYV 59
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+A+ D+ E+ GDV+ V ++S+ WW ++ A++G PA+++
Sbjct: 14 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 62
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A D+ T+ E++ V++++ + + W+ ++ K G IP++++E
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVE-KSESGWWFCQMKAKRGWIPASFLE 63
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYI 53
+A +D+ + E +LSF+K + L+I+N + W L G+ G IPSNY+
Sbjct: 11 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--HGEIGARKGLFPATYI 206
ALYD+ + +L F++G+ + + + ++ WW H + G P+ Y+
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRS-----DQHWWHGEI-GARKGLFPATYI 206
A++D+ EL RRGD + V + D+ WW G++ R G+FP+ Y+
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNME----DDMNWYRAEL-DGKEGLIPSNYI 53
A D+ A ++EL+ R+ +++L+ + D W+ +L G+ G+ PSNY+
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNY 52
MEAI + + A +DE+S ++ ++ +D W E DG +GL P++Y
Sbjct: 3 MEAI--YAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 25/75 (33%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
++A+Y + Q E+ GD+ITV R D D W
Sbjct: 3 MEAIYAYEAQGDDEISIDPGDIITVI-RGD------------------------DGSGWT 37
Query: 217 RAELDGKEGLIPSNY 231
E DG +GL P++Y
Sbjct: 38 YGECDGLKGLFPTSY 52
>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam Phosphopeptide
Length = 103
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 60 WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
+Y+G +T+ + E LL +G FLIR SES PG L V V +++ R+ G +
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYY 63
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 239 WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
+Y+G +T+ + E LL +G FLIR SES PG L V V +++ R+ G +
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYY 63
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--HGEIGARKGLFPATYI 206
ALYDF P+ EL GD++ ++ + Q W E G++ GL P ++
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
M A K ++ A EDELS K + ++ D W+R +G+ G PSNY+
Sbjct: 5 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSD-GWWRGSYNGQVGWFPSNYV 56
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+++ + EL +G + V ++ WW G + G FP+ Y+
Sbjct: 11 FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+ALY F + E+ F GD+I V +++ + W +G G FP Y+ M N
Sbjct: 9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSEN- 67
Query: 216 YRAELDGKEGLIP 228
+ K+ L+P
Sbjct: 68 -EKAVSPKKALLP 79
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIE 54
A + F A DE+SF ++++ + W G G P NY+E
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 147 LRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATY 205
+R+ E+ +V ALYD+ +L F++GD + V + S + W + RK G P+ Y
Sbjct: 2 IREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNY 61
Query: 206 ILNME 210
+ ++
Sbjct: 62 VARVD 66
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
+A +D+ A ++LSF+K + +L E+ W++A KEG IPSNY+
Sbjct: 13 VALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYV 62
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A A + A + ELSF V ++ + W L+GK GLIP NY+E
Sbjct: 12 KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 215 WYRAELDGKEGLIPSNYIE 233
W L+GK GLIP NY+E
Sbjct: 46 WLEGTLNGKTGLIPENYVE 64
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
M A K ++ A EDELS K + ++ D W+R +G+ G PSNY+
Sbjct: 18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSD-GWWRGSYNGQVGWFPSNYV 69
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+++ + EL +G + V ++ WW G + G FP+ Y+
Sbjct: 24 FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
+A +D+NAT +LSF K + +IL W R+ G+ G IPSNY+
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 24/78 (30%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
L ALYD+ +L F +G+ + + WW
Sbjct: 7 TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEA---------------------- 44
Query: 215 WYRAELDGKEGLIPSNYI 232
R+ G+ G IPSNY+
Sbjct: 45 --RSLTTGETGYIPSNYV 60
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+A +DF A+ ++ LS K + L++L + W A+ +G +PS YI N
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSTYITPVN 62
>pdb|3EG1|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG1|B Chain B, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG2|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Length = 63
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+A +DF A+ ++ LS K + L++L + W A+ +G +PS YI N
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSQYITPVN 62
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
A +D+ A ED+LSF K + +ILN + W R+ G+ G IPS Y+
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH--GEIGARKGLFPATYI 206
MV L +ALYD+ + +L F +G+ + + S+ WW G P+ Y+
Sbjct: 3 MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIEMK 56
IAK D+ A + EL +K++ L +L +D W+R + G +PSNY+E K
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLL--DDSKTWWRVRNAANRTGYVPSNYVERK 59
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKGLFPATYI 206
+ EE +V A +D+T Q+ EL+ ++ + + + D S + WW A R G P+ Y+
Sbjct: 1 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYV 56
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGE-LEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYI 206
+ LY F+ + G+ L F G++IT+ D WW GE +G FPA+Y+
Sbjct: 7 RTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYV 57
>pdb|2CSQ|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Rim- Binding Protein 2
Length = 97
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 13 AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
AE+EL F++ Q++K+ +D +YR E + GLIP N +
Sbjct: 38 AEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMV 78
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 159 ALYDFTP--QEPG------ELEFRRGDVITV-TDRSDQHWWHGEIGARKGLFPATYILNM 209
AL+D+ P P EL F+ G +I V D+ ++ GE AR GL P + +
Sbjct: 22 ALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEI 81
Query: 210 EDD 212
+ D
Sbjct: 82 QAD 84
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 171 LEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
L GD++ VT + W GE+ RKGLFP T++
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHV 70
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYI 53
+A +D+ A +LSF K + +IL+ +W+ R+ G+ G IPSNY+
Sbjct: 10 VALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYV 61
>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757)
Phosphopeptide
Length = 152
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+++ +Y+ +T +A LLS + G FLIR S F+LSVK G ++ ++ +
Sbjct: 30 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI-QXE 88
Query: 114 SGKFFLW--------VVKFNSLNELVEYH 134
G F L V +F+ + +LV ++
Sbjct: 89 GGSFSLQSDPRSTQPVPRFDXVLKLVHHY 117
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+++ +Y+ +T +A LLS + G FLIR S F+LSVK G ++ ++ +
Sbjct: 30 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI-QXE 88
Query: 293 SGKFFLW--------VVKFNSLNELVEYH 313
G F L V +F+ + +LV ++
Sbjct: 89 GGSFSLQSDPRSTQPVPRFDXVLKLVHHY 117
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIEMK 56
IAK D+ A + EL +K++ L +L +D W+R + G +PSNY+E K
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLL--DDSKTWWRVRNAANRTGYVPSNYVERK 86
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
EE +V A +D+T Q+ EL+ ++ + + + D S W R G P+ Y+
Sbjct: 30 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYV 83
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGARKGLFPATYI 206
+AL D+ + L F+R D+IT+T + ++ W+ G++ ++G FP ++
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A A D+N + L F+++ ++ I + + W+ +L+GKEG P +++E+
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65
>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin
Like C1 Domain Containing Phosphatase (Tenc1)
Length = 131
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 45 EGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDG- 103
GL+P K WY ++R A LL +K GAFLIR S S G + L++K +
Sbjct: 9 SGLVPRGSDTSKF--WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPP 66
Query: 104 --------------VQHFKVLRDSSG---KFFLWVVKFNSLNELVEYHRTASVS 140
V+HF + G K F SL+ LV H + +S
Sbjct: 67 PSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPIS 120
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 224 EGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDG- 282
GL+P K WY ++R A LL +K GAFLIR S S G + L++K +
Sbjct: 9 SGLVPRGSDTSKF--WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPP 66
Query: 283 --------------VQHFKVLRDSSG---KFFLWVVKFNSLNELVEYHRTASVS 319
V+HF + G K F SL+ LV H + +S
Sbjct: 67 PSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPIS 120
>pdb|1D4T|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With A
Slam Peptide
pdb|1D4W|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D4W|B Chain B, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D1Z|A Chain A, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|B Chain B, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|C Chain C, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|D Chain D, Crystal Structure Of The Xlp Protein Sap
pdb|1M27|A Chain A, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 104
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 61 YYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
Y+G+I+R E+LL + +G++L+R SES PG + L V + ++V + +G +
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSW 64
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 240 YYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
Y+G+I+R E+LL + +G++L+R SES PG + L V + ++V + +G +
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSW 64
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 171 LEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
L GD++ VT + W GE+ RKGLFP T++
Sbjct: 20 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHV 55
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 7 HDFNATAEDELSFRKSQVLKIL-NMEDDMNWYRAE-LDGKEGLIPSNYI 53
+ F++ E+EL+F K + ++++ E+D W++ + G+ GL+P NY+
Sbjct: 24 YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 72
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 25/78 (32%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+VQ LY F+ EL F +G+ + V ++ E+D W
Sbjct: 19 VVQTLYPFSSVTEEELNFEKGETMEVIEKP------------------------ENDPEW 54
Query: 216 YRAE-LDGKEGLIPSNYI 232
++ + G+ GL+P NY+
Sbjct: 55 WKCKNARGQVGLVPKNYV 72
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 142 SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GL 200
S +R+ E+ +V ALYD+ +L F++GD + V + S + W + RK G
Sbjct: 13 SNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGY 72
Query: 201 FPATYILNME 210
P+ Y+ ++
Sbjct: 73 IPSNYVARVD 82
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
+A +D+ A ++LSF+K + +L E+ W++A KEG IPSNY+
Sbjct: 29 VALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYV 78
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 7 HDFNATAEDELSFRKSQVLKIL-NMEDDMNWYRAE-LDGKEGLIPSNYI 53
+ F++ E+EL+F K + ++++ E+D W++ + G+ GL+P NY+
Sbjct: 9 YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 57
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 25/78 (32%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+VQ LY F+ EL F +G+ + V ++ E+D W
Sbjct: 4 VVQTLYPFSSVTEEELNFEKGETMEVIEKP------------------------ENDPEW 39
Query: 216 YRAE-LDGKEGLIPSNYI 232
++ + G+ GL+P NY+
Sbjct: 40 WKCKNARGQVGLVPKNYV 57
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
+ A K + A EDELS K + ++ D W+R +G+ G PSNY+
Sbjct: 1 IPAFVKFAYVAEREDELSLVKGSRVTVMEKCSD-GWWRGSYNGQIGWFPSNYV 52
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+ + + EL +G +TV ++ WW G + G FP+ Y+L D
Sbjct: 7 FAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVD 57
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
AIAK D+ + ELSF+K L +L +W+ +G +GL+P YI
Sbjct: 9 AIAKFDYVGRSARELSFKKGASL-LLYHRASEDWWEGRHNGIDGLVPHQYI 58
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL 207
A +D+ + EL F++G + + R+ + WW G GL P YI+
Sbjct: 11 AKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide
Recognizing Domain
Length = 123
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS 101
WY ++R A LL +K GAFLIR S S G + L++K +
Sbjct: 7 WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVA 48
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS 280
WY ++R A LL +K GAFLIR S S G + L++K +
Sbjct: 7 WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVA 48
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 71
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 7 HDFNATAEDELSFRKSQVLKIL-NMEDDMNWYRAE-LDGKEGLIPSNYI 53
+ F++ E+EL+F K + ++++ E+D W++ + G+ GL+P NY+
Sbjct: 13 YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 25/78 (32%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+VQ LY F+ EL F +G+ + V ++ E+D W
Sbjct: 8 VVQTLYPFSSVTEEELNFEKGETMEVIEKP------------------------ENDPEW 43
Query: 216 YRAE-LDGKEGLIPSNYI 232
++ + G+ GL+P NY+
Sbjct: 44 WKCKNARGQVGLVPKNYV 61
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
A +D+ A ED+LSF K + +ILN + W R+ G+ G IPS Y+
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
MV L +ALYD+ + +L F +G+ + + S+ WW G P+ Y+
Sbjct: 1 MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
>pdb|1KA6|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Py
pdb|1KA7|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Y-C
Length = 128
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 61 YYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
Y+G+I+R E+LL + +G++L+R SES PG + L V + ++V + +G
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG 62
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 240 YYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
Y+G+I+R E+LL + +G++L+R SES PG + L V + ++V + +G
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG 62
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYILNME 210
E+ +V ALYD+ +L F++GD + V + S + W + RK G P+ Y+ ++
Sbjct: 2 EDIIVVALYDYYSPFSWDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
+A +D+ + +LSF+K + +L E+ W++A KEG IPSNY+
Sbjct: 6 VVALYDYYSPFSWDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYV 56
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 36.2 bits (82), Expect = 0.029, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
++ QE EL + G+V+ V ++++ WW +G PATY+
Sbjct: 16 NYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN 57
IA H + + + +L F K + L+IL E W++A+ G+EG IP N++ N
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAKAN 63
Score = 31.6 bits (70), Expect = 0.70, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
++ LV AL+ + P G+L F +G+ + + ++S + WW + ++G P ++
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 59
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK---GLFPATYI 206
+A+Y + PQ ELE R GD + V + D W+ G + R G FP Y+
Sbjct: 11 RAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVG-VSRRTQKFGTFPGNYV 61
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN 57
IA H + + + +L F K + L+IL E W++A+ G+EG IP N++ N
Sbjct: 4 IALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAKAN 57
Score = 31.2 bits (69), Expect = 0.94, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
LV AL+ + P G+L F +G+ + + ++S + WW + ++G P ++
Sbjct: 2 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 53
>pdb|2EGE|A Chain A, Solution Structure Of The Third Sh3 Domain From Human
Kiaa1666 Protein
Length = 75
Score = 35.8 bits (81), Expect = 0.036, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 166 QEPGELEFRRGDVITVTD-RSDQHWWHGEIGARKGLFPATYILNM 209
Q G L R GDV+ V DQ +++GE+G +GL PA + +M
Sbjct: 26 QGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHM 70
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 17 LSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
L+ R V+ + DD +Y EL G GL+P++ ++
Sbjct: 31 LALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68
>pdb|1UUR|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
pdb|1UUS|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
Length = 473
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 62 YGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLS---VKCSDGVQHFKV 109
YG + R + L N+ G F+IR SE +PG F ++ V+ ++H+ V
Sbjct: 355 YGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 405
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 241 YGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLS---VKCSDGVQHFKV 288
YG + R + L N+ G F+IR SE +PG F ++ V+ ++H+ V
Sbjct: 355 YGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 405
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQ-VLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A +D++A EDE+SF+ ++ + ++D + E G G++P+NY+E
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58
Score = 35.0 bits (79), Expect = 0.077, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG--EIGARKGLFPATYI 206
+A+YD++ + E+ F+ GD I + D W +G E G+ PA Y+
Sbjct: 7 RAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 57
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 35.4 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 156 LVQALYDFTPQ-EPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
+ +A YDF P EL ++GDVI +T W G++ G+++G P Y+
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM 55
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
+A +D+ A ++LSF+K + +L E+ W++A KEG IPSNY+
Sbjct: 3 VVALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYV 53
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYILNME 210
+V ALYD+ +L F++GD + V + S + W + RK G P+ Y+ ++
Sbjct: 1 IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 57
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 23/81 (28%)
Query: 156 LVQALYDFTPQEPG-ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
+ALYDF P+ P E+ ++GD++ + + D + D +
Sbjct: 9 FARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSD 47
Query: 215 WYRAEL-DGKEGLIPSNYIEM 234
W++ +G G IP NYIE+
Sbjct: 48 WWKVRTKNGNIGYIPYNYIEI 68
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 3 AIAKHDF-NATAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIEM 55
A A +DF E E++ +K ++ IL+ +D D +W++ +G G IP NYIE+
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 35.0 bits (79), Expect = 0.064, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
IA H + + + +L F K + L+IL E W++A+ G+EG IP N++
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFV 59
Score = 31.6 bits (70), Expect = 0.70, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
++ LV AL+ + P G+L F +G+ + + ++S + WW + ++G P ++
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 59
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 23/81 (28%)
Query: 156 LVQALYDFTPQEP-GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
+ALYDF P+ P E+ ++GD++ + + D + D +
Sbjct: 16 FARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSD 54
Query: 215 WYRAEL-DGKEGLIPSNYIEM 234
W++ +G G IP NYIE+
Sbjct: 55 WWKVRTKNGNIGYIPYNYIEI 75
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 3 AIAKHDF-NATAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIEM 55
A A +DF E E++ +K ++ IL+ +D D +W++ +G G IP NYIE+
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 23/81 (28%)
Query: 156 LVQALYDFTPQEPG-ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
+ALYDF P+ P E+ ++GD++ + + D + D +
Sbjct: 16 FARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSD 54
Query: 215 WYRAEL-DGKEGLIPSNYIEM 234
W++ +G G IP NYIE+
Sbjct: 55 WWKVRTKNGNIGYIPYNYIEI 75
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 3 AIAKHDF-NATAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIEM 55
A A +DF E E++ +K ++ IL+ +D D +W++ +G G IP NYIE+
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 157 VQALYDFTPQE----PGE-LEFRRGDVITVTDRSDQHWWHG 192
V+AL+D+ P P L F+ GD++ VT+ SD WW
Sbjct: 8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQA 48
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 31/41 (75%), Gaps = 3/41 (7%)
Query: 16 ELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM 55
E+SF ++++L++ ++E W++A +G+ G+IPSNY+++
Sbjct: 23 EISFEQNEILQVSDIEG--RWWKARRANGETGIIPSNYVQL 61
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
A+ D+ + +L F RG+ I + ++ WW GE G PA ++
Sbjct: 12 AIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
E +A D+ AT E +LSF + + + IL + +W+ E G G IP+N++
Sbjct: 9 EFVAIADYAATDETQLSFLRGEKILILR-QTTADWWWGERAGCCGYIPANHV 59
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 128 NELVEYHRTASVSRSQDVKLRDMVPE--ECLVQALYDFTPQEPGELEFRRGDVITVTD-R 184
N +V+ R V LRD + E ++AL DF +EP +L + DVITV + R
Sbjct: 250 NVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMRALQDF--EEPDKLHIQMNDVITVIEGR 307
Query: 185 SDQHWWHGE 193
++ +WW G+
Sbjct: 308 AENYWWRGQ 316
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITV--TDRSDQHWWHGEIGARKGLFPATYI 206
+ LYD+ EL +VITV D W GE G +KG P TY+
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEMKNH 58
+D++A ELS +V+ + ++ D +W E ++G +P Y+E+ N
Sbjct: 24 YDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNS 76
>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B
And Elongin-C At 2.55a Resolution
Length = 187
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 47 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVK 99
L+P + +++ N+ Y+G + + AE LL K EG FL+R S FS+S +
Sbjct: 24 LVP-DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFR 75
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVK 278
L+P + +++ N+ Y+G + + AE LL K EG FL+R S FS+S +
Sbjct: 24 LVP-DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFR 75
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 47 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
+IP + WY+G I RA+ LL H G FL+R S+ ++ LSV DG+
Sbjct: 2 MIPEVQKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGK-QEYVLSV-LWDGLPR 57
Query: 107 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTA--SVSRSQDVKLRDMVPEE 154
+++ + L F S+ L+++ + +++ V L VP++
Sbjct: 58 HFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPKD 107
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
+IP + WY+G I RA+ LL H G FL+R S+ ++ LSV DG+
Sbjct: 2 MIPEVQKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGK-QEYVLSV-LWDGLPR 57
Query: 286 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTA--SVSRSQDVKLRDMVPEE 333
+++ + L F S+ L+++ + +++ V L VP++
Sbjct: 58 HFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPKD 107
>pdb|1WIE|A Chain A, Solution Structure Of The First Sh3 Domain Of Kiaa0318
Protein
Length = 96
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 10 NATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 55
N E EL + L + D+ +Y EL DG+ GL+PSN+++
Sbjct: 33 NENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 205 YILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 234
Y+ D+ +Y EL DG+ GL+PSN+++
Sbjct: 49 YVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79
>pdb|1X6G|A Chain A, Solution Structures Of The Sh3 Domain Of Human
Megakaryocyte-Associated Tyrosine-Protein Kinase
Length = 81
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH 191
+C+ + + T +PGEL FR+GDV+T+ + + W+
Sbjct: 19 QCITKC--EHTRPKPGELAFRKGDVVTILEACENKSWY 54
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPS 50
+ I K + EL+FRK V+ IL ++ +WYR + G+EGL+ +
Sbjct: 19 QCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAA 69
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 47 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
+IP + WY+G I RA+ LL H G FL+R S+ ++ LSV DG+
Sbjct: 2 MIPEVQKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGK-QEYVLSV-LWDGLPR 57
Query: 107 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTA--SVSRSQDVKLRDMVPEE 154
+++ + L F S+ L+++ + +++ V L VP++
Sbjct: 58 HFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPKD 107
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
+IP + WY+G I RA+ LL H G FL+R S+ ++ LSV DG+
Sbjct: 2 MIPEVQKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGK-QEYVLSV-LWDGLPR 57
Query: 286 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTA--SVSRSQDVKLRDMVPEE 333
+++ + L F S+ L+++ + +++ V L VP++
Sbjct: 58 HFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPKD 107
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 17/74 (22%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
AL+D+ + +L FR GD + V D S + WW +KG +
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQL------------ 59
Query: 219 ELDGKEGLIPSNYI 232
+G IPSNY+
Sbjct: 60 -----QGYIPSNYV 68
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+ + + EL G +TV + WW G + G FP+ Y+L D
Sbjct: 8 FAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYVLEEVD 58
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
+ A + A EDELS + + D W+R +G+ G PSNY+
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVXEXCSD-GWWRGSYNGQIGWFPSNYV 53
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ L+ F P+ EL+ G+++ V + + +W +KGL P Y+
Sbjct: 11 RVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYL 59
Score = 32.0 bits (71), Expect = 0.54, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 9 FNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
F ++EL ++ +L +D NW +G++GL+P NY+E
Sbjct: 16 FVPETKEELQVMPGNIVFVLKKGND-NWATVMFNGQKGLVPCNYLE 60
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 33.1 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 170 ELEFRRGDVITVTDRSDQHWWHGEIGAR-----KGLFPATYI 206
+L G +I + ++ WW GE+ AR KG FPA+++
Sbjct: 23 QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
L+DF + EL FR GDV V + +Q WW + G Y+
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYV 62
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 8 DFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG-----KEGLIPSNYI 53
DF + ++ELSFR V + E+ W+ LD +G +P NY+
Sbjct: 18 DFKSRTDEELSFRAGDVFHVARKEEQW-WWATLLDEAGGAVAQGYVPHNYL 67
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIEM 55
A +K+DF A ELS K VL+IL +D W++ G G +P+N +++
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEIL--DDRRQWWKVRNASGDSGFVPNNILDI 55
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVT----DRSDQHWWHGE--IGARKGLFPATYILNME 210
+Q +Y +TPQ ELE GD I ++ + + W +G GL P YI +
Sbjct: 19 LQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKAD 78
Query: 211 DDMNW 215
+ W
Sbjct: 79 ECSTW 83
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 32.0 bits (71), Expect = 0.51, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVT-----DRSDQHWWHGEIGARKGLFPATYILNMED 211
VQA +D+T + EL+ + GDV+ V + D+ W G E
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV---------------KES 91
Query: 212 DMNWYRAELDGKEGLIPSNYIE 233
D N ++ EL+ G+ P N+ E
Sbjct: 92 DWNQHK-ELEKCRGVFPENFTE 112
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNM----EDDMNWY----------RAELDGKEGLIPS 50
A+HD+ AT DEL + V+ ++ E D W EL+ G+ P
Sbjct: 49 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPE 108
Query: 51 NYIE 54
N+ E
Sbjct: 109 NFTE 112
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 32.0 bits (71), Expect = 0.54, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 150 MVPEECL-VQALYDF-TPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA------RKGLF 201
+VP L V+AL DF +P L R GDVITV ++ W G I R G F
Sbjct: 13 LVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYF 72
Query: 202 P 202
P
Sbjct: 73 P 73
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 64
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYI 53
+ +DF A ELS ++ VL++L +D W++ + G+EG +P N +
Sbjct: 10 VLCNYDFQARNSSELSVKQRDVLEVL--DDSRKWWKVRDPAGQEGYVPYNIL 59
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 68
Score = 32.0 bits (71), Expect = 0.62, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYI 53
+ +DF A ELS ++ VL++L +D W++ + G+EG +P N +
Sbjct: 12 LCNYDFQARNSSELSVKQRDVLEVL--DDSRKWWKVRDPAGQEGYVPYNIL 60
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human
Epidermal Growth Factor Receptor Pathway Substrate
8-Like Protein
Length = 68
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYI 53
+DF A +ELS K +VL++L ED W++ G+ G +P N +
Sbjct: 14 YDFTARNANELSVLKDEVLEVL--EDGRQWWKLRSRSGQAGYVPCNIL 59
>pdb|1WQU|A Chain A, Solution Structure Of The Human Fes Sh2 Domain
pdb|2DCR|A Chain A, Fully Automated Solution Structure Determination Of The
Fes Sh2 Domain
Length = 114
Score = 31.6 bits (70), Expect = 0.72, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
WY+G I RA+ LL H G FL+R S+ ++ LSV +HF
Sbjct: 18 WYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHF 62
Score = 31.6 bits (70), Expect = 0.72, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
WY+G I RA+ LL H G FL+R S+ ++ LSV +HF
Sbjct: 18 WYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHF 62
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG---EIGARKGLFPATYILNM 209
+A++ F P+ ELE D + V +++ +W+ GAR G+FPA Y + +
Sbjct: 7 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGAR-GVFPAYYAIEV 60
>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
pdb|3O5Z|B Chain B, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
Length = 90
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR-------------- 197
PE +ALY F + P +LE GDV+ V+ + Q E G R
Sbjct: 9 PEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNER 68
Query: 198 ---KGLFPATYI 206
+G FP TY+
Sbjct: 69 TRQRGDFPGTYV 80
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
V AL + L F RGD+I + + + W G G R GLFPA +
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIV 62
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
Length = 68
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-----DGKEGLIPSNYIEM 55
+ +A+ + + ED+L+F K Q + + ++E D WY E D EG+ P +++ +
Sbjct: 8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVE-DAEWYFGEYQDSNGDVIEGIFPKSFVAV 66
Query: 56 KN 57
+
Sbjct: 67 QG 68
>pdb|3CWG|A Chain A, Unphosphorylated Mouse Stat3 Core Fragment
pdb|3CWG|B Chain B, Unphosphorylated Mouse Stat3 Core Fragment
Length = 562
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 41 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKC 100
LD L+ + + N + G I++ +LS K G FL+R SESS
Sbjct: 439 LDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSK--------- 489
Query: 101 SDGVQHFKVLRDSSGK 116
GV V +D SGK
Sbjct: 490 EGGVTFTWVEKDISGK 505
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKC 279
LD L+ + + N + G I++ +LS K G FL+R SESS
Sbjct: 439 LDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSK--------- 489
Query: 280 SDGVQHFKVLRDSSGK 295
GV V +D SGK
Sbjct: 490 EGGVTFTWVEKDISGK 505
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 31.2 bits (69), Expect = 0.98, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA---ELDGKEGLIPSNYIEMK 56
+A ++++A DELS + + IL E WYR K+G+ P++YI +K
Sbjct: 14 GVAFYNYDARGADELSLQIGDTVHIL--ETYEGWYRGYTLRKKSKKGIFPASYIHLK 68
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYI 206
EE A Y++ + EL + GD + + + + + W+ G ++KG+FPA+YI
Sbjct: 10 EEKYGVAFYNYDARGADELSLQIGDTVHILE-TYEGWYRGYTLRKKSKKGIFPASYI 65
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 163 FTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
+T Q E+ F +G + V ++ + WW+ ++G PA+Y+ +D
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS 66
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ + + ++DE+ F K ++++ + WY L GKEG P++Y++
Sbjct: 12 VTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL-GKEGWAPASYLK 61
>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The P85beta
Subunit Of Phosphatidylinositol 3-Kinase From H.Sapiens,
Northeast Structural Genomics Consortium Target Hr5531e
Length = 88
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR-------------- 197
PE +ALY F + P +LE GDV+ V+ + Q E G R
Sbjct: 4 PEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNER 63
Query: 198 ---KGLFPATYI 206
+G FP TY+
Sbjct: 64 TRQRGDFPGTYV 75
>pdb|2EGC|A Chain A, Solution Structure Of The Fifth Sh3 Domain From Human
Kiaa0418 Protein
Length = 75
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 14 EDELSFRKSQVLKILNMEDDMNWYRAELDGKE---GLIPSNYIEMKN 57
E+ F++ +++L + WY LDG + G +PSNY+E KN
Sbjct: 23 EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN 69
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical
Protein Flj21522
Length = 68
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+Q LY+F + P EL +G+ + V D S + W R G P+ +
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNIL 59
>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX
Length = 596
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 41 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS 90
LD L+ + + N + G I++ +LS K G FL+R SESS
Sbjct: 439 LDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESS 488
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS 269
LD L+ + + N + G I++ +LS K G FL+R SESS
Sbjct: 439 LDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESS 488
>pdb|2RAF|A Chain A, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
pdb|2RAF|B Chain B, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
pdb|2RAF|C Chain C, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
Length = 209
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYG 63
+ D +A E + SQVLK N +++GKE P+ + N D
Sbjct: 102 VVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKE---PTTVLVAGNDDSAKQ 158
Query: 64 RITRADAERLLSNKHEG 80
R TRA A+ L K G
Sbjct: 159 RFTRALADSPLEVKDAG 175
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG---EIGARKGLFPATYILNM 209
+A++ F P+ ELE D + V +++ +W+ GAR G+FPA Y + +
Sbjct: 10 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGAR-GVFPAYYAIEV 63
>pdb|1Y1U|A Chain A, Structure Of Unphosphorylated Stat5a
pdb|1Y1U|B Chain B, Structure Of Unphosphorylated Stat5a
pdb|1Y1U|C Chain C, Structure Of Unphosphorylated Stat5a
Length = 585
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 63 GRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVK 99
G + + A LL NK +G FL+R S+S G +++ K
Sbjct: 469 GFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWK 505
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 242 GRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVK 278
G + + A LL NK +G FL+R S+S G +++ K
Sbjct: 469 GFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWK 505
>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
Nexin-9
Length = 77
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 27/83 (32%)
Query: 158 QALYDFTPQEPG--ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+ +YDF EPG EL G++ITVT+ + W +E N
Sbjct: 13 RVMYDFAA-EPGNNELTVTEGEIITVTNPNVGGGW------------------LEGKNN- 52
Query: 216 YRAELDGKEGLIPSNYIEMKNHD 238
G++GL+P++Y+E+ +D
Sbjct: 53 -----KGEQGLVPTDYVEILPND 70
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 2 EAIAKHDFNAT-AEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMKNHD 59
+A +DF A +EL+ + +++ + N W + + G++GL+P++Y+E+ +D
Sbjct: 11 KARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPND 70
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 157 VQALYDFTPQE-----PGELEFRRGDVITVTDRSDQHWWHG 192
++AL+D+ + L FR GDV+ V D D+ WW
Sbjct: 4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQA 44
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 157 VQALYDFTPQE-----PGELEFRRGDVITVTDRSDQHWWHG 192
++AL+D+ + L FR GDV+ V D D+ WW
Sbjct: 10 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQA 50
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 162 DFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
DFTP + L+ ++GD+I + + W G + + G F Y+
Sbjct: 17 DFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYV 63
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 171 LEFRRGDVITVTDRSDQHWWH 191
L FR GDV+ V D D+ WW
Sbjct: 449 LSFRFGDVLHVIDAGDEEWWQ 469
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-----DGKEGLIPSNYIEMK 56
+ +A+ + + ED+L+F K Q + + ++E D WY E D EG+ P +++ ++
Sbjct: 10 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVE-DAEWYFGEYQDSNGDVIEGIFPKSFVAVQ 68
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVT-----DRSDQHWWHGEIGARKGLFPATYILNMED 211
VQA +D+T + EL+ + GDV+ V + D+ W G E
Sbjct: 13 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV---------------KES 57
Query: 212 DMNWYRAELDGKEGLIPSNYIE 233
D N ++ +L+ G+ P N+ E
Sbjct: 58 DWNQHK-KLEKCRGVFPENFTE 78
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEM 55
+ + A+ DEL+ + +VL+++ D +W +A G+ G +P Y++
Sbjct: 20 YSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQF 69
>pdb|1K1Z|A Chain A, Solution Structure Of N-Terminal Sh3 Domain Mutant(P33g)
Of Murine Vav
Length = 78
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 141 RSQDVKLRDM-VPEECLVQALYDFTPQEPGE----LEFRRGDVITVTDRSDQH-WWHGEI 194
R+QD K ++ +P+ + Q Y P PG L GD++ +T +H WW G
Sbjct: 1 RAQDKKRNELGLPKMEVFQEYYGIPP-PPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRN 59
Query: 195 GARK--GLFPATYI 206
A G FP +
Sbjct: 60 TATNEVGWFPCNRV 73
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 157 VQALYDFTPQE----PGE-LEFRRGDVITVTDRSDQHWWHG 192
V+AL+D+ + P + L F+ GD++ V + SD WW
Sbjct: 14 VRALFDYDKTKDSGLPSQGLNFKFGDILHVINASDDEWWQA 54
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNM----EDDMNWYRA----------ELDGKEGLIPS 50
A+HD+ AT DEL + V+ ++ E D W +L+ G+ P
Sbjct: 147 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPE 206
Query: 51 NYIE 54
N+ E
Sbjct: 207 NFTE 210
>pdb|3I5R|A Chain A, Pi3k Sh3 Domain In Complex With A Peptide Ligand
pdb|3I5S|A Chain A, Crystal Structure Of Pi3k Sh3
pdb|3I5S|B Chain B, Crystal Structure Of Pi3k Sh3
pdb|3I5S|C Chain C, Crystal Structure Of Pi3k Sh3
pdb|3I5S|D Chain D, Crystal Structure Of Pi3k Sh3
Length = 83
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 17/74 (22%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRS---------------DQHWWHG-- 192
M E +ALYD+ + +++ GD++TV S + W +G
Sbjct: 1 MSAEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYN 60
Query: 193 EIGARKGLFPATYI 206
E +G FP TY+
Sbjct: 61 ETTGERGDFPGTYV 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,308,465
Number of Sequences: 62578
Number of extensions: 470117
Number of successful extensions: 2850
Number of sequences better than 100.0: 438
Number of HSP's better than 100.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1365
Number of HSP's gapped (non-prelim): 1144
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)