RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10189
(376 letters)
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 225 bits (574), Expect = 7e-73
Identities = 130/217 (59%), Positives = 164/217 (75%), Gaps = 4/217 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
MEAIAK+DF ATA+DELSF++ +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60
Query: 61 YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +GK+FL
Sbjct: 61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120
Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVK---LRDMVPEECLVQALYDFTPQEPGELEFRRG 176
WVVKFNSLNELV+YHR+ SVSR+Q + + + + VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
D I V D SD +WW G + G+FP Y+ + ++
Sbjct: 181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV 217
Score = 168 bits (427), Expect = 7e-51
Identities = 105/207 (50%), Positives = 130/207 (62%), Gaps = 29/207 (14%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
A YDF EL F+RGD++ V + W Y
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNW-------------------------Y 37
Query: 217 RAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSL 275
+AEL+GK+G IP NYIEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSL
Sbjct: 38 KAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSL 97
Query: 276 SVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVK---LRDMVPE 332
SVK + VQHFKVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + + + +
Sbjct: 98 SVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 157
Query: 333 ECLVQALYDFTPQEPGELEFRRDLKIK 359
VQAL+DF PQE GEL FRR I
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIH 184
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 205 bits (522), Expect = 2e-64
Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 38/281 (13%)
Query: 57 NHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
+ ++YG I+RA+AE L + +G FL+R S G + LS+ HF + R +
Sbjct: 5 HLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLN 64
Query: 115 GKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEF 173
G + + EL E++ + L L + G
Sbjct: 65 GTYAIAGGKAHCGPAELCEFYSRDP---------------DGLPCNLRKPCNRPSGLEPQ 109
Query: 174 RRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
+ + L A + +
Sbjct: 110 PGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIA--------------TTA 155
Query: 234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
+ WY+ +TR +AER L + + +G FL+R + G ++LS+ V H+ + +D
Sbjct: 156 HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYHYLISQD 214
Query: 292 SSGKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 331
+GK+ + KF++L +LVEY + + L++ P
Sbjct: 215 KAGKYCIPEGTKFDTLWQLVEYLKLKADGLI--YCLKEACP 253
Score = 108 bits (270), Expect = 2e-27
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
+ WY+ +TR +AER L + + +G FL+R + G ++LS+ V H
Sbjct: 150 LIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYH 208
Query: 107 FKVLRDSSGKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
+ + +D +GK+ + KF++L +LVEY + + L++ P
Sbjct: 209 YLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGLI--YCLKEACP 253
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 197 bits (502), Expect = 2e-61
Identities = 57/267 (21%), Positives = 112/267 (41%), Gaps = 36/267 (13%)
Query: 57 NHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
+ +++G ITR +AE L +G +L+R S + G F+LSV H+ + R+ +
Sbjct: 4 HLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELN 63
Query: 115 GKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEF 173
G + + S +L YH S + LV L + G
Sbjct: 64 GTYAIAGGRTHASPADLCHYHSQES---------------DGLVCLLKKPFNRPQGV--- 105
Query: 174 RRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
+ + + T+ L + ++ E LI +
Sbjct: 106 ---------QPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTA-- 154
Query: 234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
+ W++G+I+R ++E+++ +K G FLIR + + G ++L + V H+++ +D
Sbjct: 155 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARD-NNGSYALCLLHEGKVLHYRIDKD 213
Query: 292 SSGKFFL-WVVKFNSLNELVEYHRTAS 317
+GK + KF++L +LVE++ +
Sbjct: 214 KTGKLSIPEGKKFDTLWQLVEHYSYKA 240
Score = 104 bits (261), Expect = 3e-26
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
+ W++G+I+R ++E+++ +K G FLIR + + G ++L + V H
Sbjct: 149 LIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARD-NNGSYALCLLHEGKVLH 207
Query: 107 FKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
+++ +D +GK + KF++L +LVE++ +
Sbjct: 208 YRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKA 240
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 168 bits (425), Expect = 2e-50
Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 59/256 (23%)
Query: 46 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 105
G + N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V
Sbjct: 1 GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60
Query: 106 HFKVLRD-----------------SSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR 148
H+ + S + + +F+SL L+E+++ + + ++
Sbjct: 61 HYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPV 120
Query: 149 ----------DMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK 198
E V+AL+DF + +L F++GD++ + D+ ++ WW+ E
Sbjct: 121 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS--- 177
Query: 199 GLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE 258
+GK G+IP Y+E R A L+ E
Sbjct: 178 ----------------------EGKRGMIPVPYVEK-------YRPASASVSALIGGNQE 208
Query: 259 GAFLIRVSESSPGDFS 274
G+ + PG ++
Sbjct: 209 GSHPQPLGGPEPGPYA 224
Score = 116 bits (290), Expect = 1e-30
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 27/157 (17%)
Query: 225 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 284
G + N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V
Sbjct: 1 GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60
Query: 285 HFKVLRD-----------------SSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR 327
H+ + S + + +F+SL L+E+++ + + ++
Sbjct: 61 HYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPV 120
Query: 328 ----------DMVPEECLVQALYDFTPQEPGELEFRR 354
E V+AL+DF + +L F++
Sbjct: 121 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 157
Score = 73.4 bits (179), Expect = 3e-15
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHD 59
A DFN E++L F+K +L+I + ++ W+ AE +GK G+IP Y+E
Sbjct: 137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEGKRGMIPVPYVEK---- 191
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFS 95
R A L+ EG+ + PG ++
Sbjct: 192 ---YRPASASVSALIGGNQEGSHPQPLGGPEPGPYA 224
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 168 bits (427), Expect = 8e-50
Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 18/263 (6%)
Query: 35 NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPG 92
+ A + G + + + + + +Y+ ++R +A +LL G FL+R S S PG
Sbjct: 18 GSHMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPG 76
Query: 93 DFSLSVKCSD---GVQHFKVLRDSS-------GKFFLWVVKFNSLNELVEYHRTASVSRS 142
++SL+V+ +D V H+ + R + F + L+ + + ++ +
Sbjct: 77 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEA 136
Query: 143 QDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKGLF 201
+ P +V + FT + +L F +G+ + + +++Q WW GL
Sbjct: 137 S-LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLV 195
Query: 202 PATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAF 261
PA Y+ + M ++ + + + E +
Sbjct: 196 PANYV---QIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKV 252
Query: 262 LIRVSESSPGDFSLSVKCSDGVQ 284
++ L VK V
Sbjct: 253 TFDRVPNAYDPTQLRVKKGQTVL 275
Score = 127 bits (320), Expect = 3e-34
Identities = 30/158 (18%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 214 NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPG 271
+ A + G + + + + + +Y+ ++R +A +LL G FL+R S S PG
Sbjct: 18 GSHMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPG 76
Query: 272 DFSLSVKCSD---GVQHFKVLRDSS-------GKFFLWVVKFNSLNELVEYHRTASVSRS 321
++SL+V+ +D V H+ + R + F + L+ + + ++ +
Sbjct: 77 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEA 136
Query: 322 QDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
+ P +V + FT + +L F + +++
Sbjct: 137 S-LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLE 173
Score = 102 bits (255), Expect = 5e-25
Identities = 31/207 (14%), Positives = 75/207 (36%), Gaps = 54/207 (26%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHD 59
+ F E +L F + + L+IL+ + + +W+ A G GL+P+NY+++ +
Sbjct: 148 EVVVGTFKFTGERETDLPFEQGERLEILS-KTNQDWWEARNALGTTGLVPANYVQI-QME 205
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
++ R ++ ++ + + G
Sbjct: 206 FHNDRTSKGASQSSIGSSGGG--------------------------------------- 226
Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVI 179
+++ + S +++L+ +P + V +P +L ++G +
Sbjct: 227 ------------AERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTV 274
Query: 180 TVTDRSDQHWWHGEIGARKGLFPATYI 206
VT + + E+ + G P TY+
Sbjct: 275 LVTQKMSNGMYKAELDGQIGSVPHTYL 301
Score = 53.3 bits (127), Expect = 4e-08
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ NA +L +K Q + + + Y+AELDG+ G +P Y+
Sbjct: 251 KVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSN-GMYKAELDGQIGSVPHTYLRF 303
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 166 bits (421), Expect = 6e-47
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 9/180 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE----MKNHD 59
+A +DF A+ ++ LS K + L++L + W A+ +G +PSNYI ++ H
Sbjct: 47 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 106
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S GK ++
Sbjct: 107 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 166
Query: 120 W-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDV 178
+FN+L ELV +H T + + P + + E R D+
Sbjct: 167 SSESRFNTLAELVHHHST----VADGLITTLHYPAPKRNKPTIYGVSPNYDKWEMERTDI 222
Score = 162 bits (411), Expect = 1e-45
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+ L ALYDF L +G+ + V + W
Sbjct: 41 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEW--------------------- 79
Query: 212 DMNWYRAELDGKEGLIPSNYIE----MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSE 267
A+ +G +PSNYI ++ H WY+G ++R AE LLS+ G+FL+R SE
Sbjct: 80 ----CEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESE 135
Query: 268 SSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKL 326
SSPG S+S++ V H+++ S GK ++ +FN+L ELV +H T + +
Sbjct: 136 SSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHST----VADGLIT 191
Query: 327 RDMVPEECLVQALYDFTPQEPGELEF-RRDLKIKRR 361
P + + E R D+ +K +
Sbjct: 192 TLHYPAPKRNKPTIYGVSPNYDKWEMERTDITMKHK 227
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 167 bits (425), Expect = 6e-47
Identities = 61/295 (20%), Positives = 104/295 (35%), Gaps = 38/295 (12%)
Query: 60 WYYGRITRADAERLLSNK--HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
++YG I+RA+AE L +G FL+R S G + LS+ HF + R +G +
Sbjct: 10 FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 69
Query: 118 FLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
+ EL E++ + L L + G
Sbjct: 70 AIAGGKAHCGPAELCEFYSRDP---------------DGLPCNLRKPCNRPSGLEPQP-- 112
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 236
R+ L + E +
Sbjct: 113 -----GVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEK-------LIATTAHER 160
Query: 237 HDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
WY+ +TR +AER L + + +G FL+R + G ++LS+ V H+ + +D +G
Sbjct: 161 MPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAG 219
Query: 295 KFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPG 348
K+ + KF++L +LVEY + + L++ P A P P
Sbjct: 220 KYCIPEGTKFDTLWQLVEYLKL--KADGLIYCLKEACPNSSASNASGAAAPTLPA 272
Score = 88.8 bits (220), Expect = 2e-19
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
+ WY+ +TR +AER L + + +G FL+R + G ++LS+ V H
Sbjct: 152 LIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYH 210
Query: 107 FKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTP 165
+ + +D +GK+ + KF++L +LVEY + + L++ P A P
Sbjct: 211 YLISQDKAGKYCIPEGTKFDTLWQLVEYLKL--KADGLIYCLKEACPNSSASNASGAAAP 268
Query: 166 QEPG 169
P
Sbjct: 269 TLPA 272
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 153 bits (390), Expect = 1e-46
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 43 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 102
G G S I+ + W+ G + R + LL + G +LIR + F++S+K +D
Sbjct: 1 GSSGSSGSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFND 60
Query: 103 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 148
V+H KV+ + KF+SL ELVEY++ S+ S L+
Sbjct: 61 EVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLK 109
Score = 153 bits (390), Expect = 1e-46
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 281
G G S I+ + W+ G + R + LL + G +LIR + F++S+K +D
Sbjct: 1 GSSGSSGSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFND 60
Query: 282 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 327
V+H KV+ + KF+SL ELVEY++ S+ S L+
Sbjct: 61 EVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLK 109
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 152 bits (386), Expect = 4e-46
Identities = 26/101 (25%), Positives = 51/101 (50%)
Query: 43 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 102
G G+ + + WY G ++R +A+ L + G FL+R S + PGD+ LSV +
Sbjct: 4 GSSGMSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENS 63
Query: 103 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 143
V H+ + + +F + +F+ L L+E+++ + +
Sbjct: 64 RVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTT 104
Score = 152 bits (386), Expect = 4e-46
Identities = 26/101 (25%), Positives = 51/101 (50%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 281
G G+ + + WY G ++R +A+ L + G FL+R S + PGD+ LSV +
Sbjct: 4 GSSGMSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENS 63
Query: 282 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 322
V H+ + + +F + +F+ L L+E+++ + +
Sbjct: 64 RVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTT 104
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 151 bits (383), Expect = 1e-45
Identities = 51/99 (51%), Positives = 74/99 (74%)
Query: 51 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
++I+++ +W++ ++R AE LL K G F+IR S+SSPGDFS+SV+ D VQHFKV+
Sbjct: 2 SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 61
Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 149
RD+ G +FLW KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 62 RDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 100
Score = 151 bits (383), Expect = 1e-45
Identities = 51/99 (51%), Positives = 74/99 (74%)
Query: 230 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
++I+++ +W++ ++R AE LL K G F+IR S+SSPGDFS+SV+ D VQHFKV+
Sbjct: 2 SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 61
Query: 290 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 328
RD+ G +FLW KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 62 RDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 100
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 154 bits (390), Expect = 8e-43
Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 11/146 (7%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE-------- 54
IAK++F+ TAE +L F K VL I+ + D NWY+A+ G+EG+IP+NY++
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAG 74
Query: 55 --MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
+ W++G+ITR AERLL G FL+R S + PGD++L V C V+H++++
Sbjct: 75 TKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYH 134
Query: 113 SSGKFFLWVVKFNSLNELVEYHRTAS 138
+S V F +L +LVE++ T +
Sbjct: 135 ASKLSIDEEVYFENLMQLVEHYTTDA 160
Score = 152 bits (385), Expect = 4e-42
Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 38/225 (16%)
Query: 147 LRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
++ P A Y+F +L F +GDV+T+ + W
Sbjct: 4 IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNW---------------- 47
Query: 207 LNMEDDMNWYRAELDGKEGLIPSNYIE----------MKNHDWYYGRITRADAERLLSNK 256
+ G+EG+IP+NY++ + W++G+ITR AERLL
Sbjct: 48 --------YKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPP 99
Query: 257 HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTA 316
G FL+R S + PGD++L V C V+H++++ +S V F +L +LVE++ T
Sbjct: 100 ETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTT- 158
Query: 317 SVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKRR 361
+ +L E V A +F L ++LK+ +
Sbjct: 159 -DADGLCTRLIKPKVMEGTVAAQDEFYRSGW-ALN-MKELKLLQT 200
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 140 bits (356), Expect = 1e-41
Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
Query: 57 NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
+ W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +G
Sbjct: 2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 61
Query: 116 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
K+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 62 KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96
Score = 140 bits (356), Expect = 1e-41
Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
Query: 236 NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
+ W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLRD +G
Sbjct: 2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 61
Query: 295 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
K+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 62 KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 139 bits (352), Expect = 6e-41
Identities = 74/140 (52%), Positives = 90/140 (64%), Gaps = 26/140 (18%)
Query: 53 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGEL 171
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+ PQ+P
Sbjct: 61 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQV-----------PQQP--- 106
Query: 172 EFRRGDVITVTDRSDQHWWH 191
H H
Sbjct: 107 -----------TYVQAHHHH 115
Score = 139 bits (352), Expect = 6e-41
Identities = 69/102 (67%), Positives = 84/102 (82%), Gaps = 1/102 (0%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
IEMK H W++G+I RA AE +LS +H+GAFLIR SES+PGDFSLSVK + VQHFKVLR
Sbjct: 1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPE 332
D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61 DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQV 102
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 145 bits (365), Expect = 7e-41
Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 42/212 (19%)
Query: 47 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
+ + + WY G ++R +A+ L + G FL+R S + PGD+ LSV + V H
Sbjct: 1 MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSH 60
Query: 107 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL---------- 156
+ + + +F + +F+ L L+E+++ + + ++ P +
Sbjct: 61 YIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPT 120
Query: 157 -------VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
V+ LYDF + +L F++G+++ + ++ ++ WW
Sbjct: 121 AEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNK-------------- 166
Query: 210 EDDMNWYRAELDGKEGLIPSNYIEMKNHDWYY 241
DG+ G+IP Y+E +
Sbjct: 167 -----------DGRVGMIPVPYVEKLVRSSPH 187
Score = 108 bits (270), Expect = 3e-27
Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
+ + + WY G ++R +A+ L + G FL+R S + PGD+ LSV + V H
Sbjct: 1 MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSH 60
Query: 286 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL---------- 335
+ + + +F + +F+ L L+E+++ + + ++ P +
Sbjct: 61 YIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPT 120
Query: 336 -------VQALYDFTPQEPGELEFRRDLKIK 359
V+ LYDF + +L F++ +
Sbjct: 121 AEDNLEYVRTLYDFPGNDAEDLPFKKGEILV 151
Score = 97.8 bits (242), Expect = 3e-23
Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 40/207 (19%)
Query: 6 KHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRI 65
+DF ++L F+K ++L I+ ++ W DG+ G+IP Y+E +G+
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKH 190
Query: 66 TRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFN 125
++ E A +++ ++S + ++
Sbjct: 191 GNRNSNS--YGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNG------------ 236
Query: 126 SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRS 185
P + L GD++ VT +
Sbjct: 237 --------------------------PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMN 270
Query: 186 DQHWWHGEIGARKGLFPATYILNMEDD 212
W GE+ RKGLFP T++ +
Sbjct: 271 INGQWEGEVNGRKGLFPFTHVKIFDPQ 297
Score = 60.4 bits (145), Expect = 2e-10
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
AI K A + L+ ++K+ M + + E++G++GL P ++++
Sbjct: 242 AIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGEVNGRKGLFPFTHVKI 293
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 137 bits (346), Expect = 5e-40
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 45 EGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 104
P N +E H WY+G ++R+ AE LLS+ G+FL+R SESSPG S+S++ V
Sbjct: 5 SSGTPVNSLEK--HSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRV 62
Query: 105 QHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
H+++ + GK ++ +F++L ELV +H T +
Sbjct: 63 YHYRINTTADGKVYVTAESRFSTLAELVHHHSTVA 97
Score = 137 bits (346), Expect = 5e-40
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 224 EGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 283
P N +E H WY+G ++R+ AE LLS+ G+FL+R SESSPG S+S++ V
Sbjct: 5 SSGTPVNSLEK--HSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRV 62
Query: 284 QHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
H+++ + GK ++ +F++L ELV +H T +
Sbjct: 63 YHYRINTTADGKVYVTAESRFSTLAELVHHHSTVA 97
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 131 bits (331), Expect = 9e-38
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 38 RAELDGKEGLIPSNY-IEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDF 94
GL+P + ++ W++ +I+R +A+RL+ + +G FL+R S+S+P F
Sbjct: 5 HHHHHHSSGLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTF 64
Query: 95 SLSVKCSDGVQHFKVLRDSSGKFFLWV-----VKFNSLNELVEYHRTAS 138
LS+ ++HF+++ +F L +LVE+++
Sbjct: 65 VLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNK 113
Score = 131 bits (331), Expect = 9e-38
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 217 RAELDGKEGLIPSNY-IEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDF 273
GL+P + ++ W++ +I+R +A+RL+ + +G FL+R S+S+P F
Sbjct: 5 HHHHHHSSGLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTF 64
Query: 274 SLSVKCSDGVQHFKVLRDSSGKFFLWV-----VKFNSLNELVEYHRTAS 317
LS+ ++HF+++ +F L +LVE+++
Sbjct: 65 VLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNK 113
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 130 bits (328), Expect = 2e-37
Identities = 25/101 (24%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 55 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+ W++G+I++ +A LL + +FL+R S+++PGD+SL + ++ +Q FK+
Sbjct: 13 HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP 72
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
+ +F + +NS+ ++++++R + L++ VP +
Sbjct: 73 NNQFMMGGRYYNSIGDIIDHYRKEQIVEG--YYLKEPVPMQ 111
Score = 130 bits (328), Expect = 2e-37
Identities = 25/101 (24%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 234 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+ W++G+I++ +A LL + +FL+R S+++PGD+SL + ++ +Q FK+
Sbjct: 13 HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP 72
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
+ +F + +NS+ ++++++R + L++ VP +
Sbjct: 73 NNQFMMGGRYYNSIGDIIDHYRKEQIVEG--YYLKEPVPMQ 111
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 135 bits (341), Expect = 3e-37
Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 28/266 (10%)
Query: 48 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
+ N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60
Query: 108 KVLRD-----------------SSGKFFLWVVKFNSLNELVEYHRTASVSR--------- 141
+ S + + +F+SL L+E+++ +
Sbjct: 61 IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120
Query: 142 -SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKG 199
Q + E V+AL+DF + +L F++GD++ + D+ ++ WW+ E ++G
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 180
Query: 200 LFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEG 259
+ P Y+ A + G + + Y L +
Sbjct: 181 MIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYA 240
Query: 260 AFLIRVSESSPGDFSLSVKCSDGVQH 285
+ + ++ +L+++ + V+
Sbjct: 241 RVIQKRVPNAYDKTALALEVGELVKV 266
Score = 101 bits (252), Expect = 1e-24
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
+ N+ + WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60
Query: 287 KVLRD-----------------SSGKFFLWVVKFNSLNELVEYHRTASVSR--------- 320
+ S + + +F+SL L+E+++ +
Sbjct: 61 IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120
Query: 321 -SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRR 354
Q + E V+AL+DF + +L F++
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 155
Score = 98.9 bits (245), Expect = 9e-24
Identities = 37/208 (17%), Positives = 66/208 (31%), Gaps = 51/208 (24%)
Query: 6 KHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHDWYYGR 64
DFN E++L F+K +L+I + ++ W+ AE +GK G+IP Y+E
Sbjct: 140 LFDFNGNDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEGKRGMIPVPYVEKYRPASA--- 195
Query: 65 ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKF 124
L+ EG+ + PG ++ +
Sbjct: 196 ----SVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQ----------------- 234
Query: 125 NSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDR 184
P V + L G+++ VT
Sbjct: 235 -------------------------NGPIYARVIQKRVPNAYDKTALALEVGELVKVTKI 269
Query: 185 SDQHWWHGEIGARKGLFPATYILNMEDD 212
+ W GE ++G FP T++ ++
Sbjct: 270 NVSGQWEGECNGKRGHFPFTHVRLLDQQ 297
Score = 60.4 bits (145), Expect = 2e-10
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
I K NA + L+ +++K+ + + E +GK G P ++ + +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVS-GQWEGECNGKRGHFPFTHVRLLDQQ 297
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 130 bits (328), Expect = 3e-37
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 43 GKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSV 98
GK + + ++ H WY G + RA AE +L+N+ +G FL+R +F++S+
Sbjct: 7 GKAEAEQNWWEGPPQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISI 66
Query: 99 KCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKLRDMVPE 153
K + V+H K++ F L ELVE+++ S+ D L+ E
Sbjct: 67 KYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
Score = 130 bits (328), Expect = 3e-37
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 222 GKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSV 277
GK + + ++ H WY G + RA AE +L+N+ +G FL+R +F++S+
Sbjct: 7 GKAEAEQNWWEGPPQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISI 66
Query: 278 KCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKLRDMVPE 332
K + V+H K++ F L ELVE+++ S+ D L+ E
Sbjct: 67 KYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 130 bits (328), Expect = 8e-37
Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 39/198 (19%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD---GV 104
+ + + +Y+ ++R +A +LL G FL+R S S PG++SL+V+ +D V
Sbjct: 4 NGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAV 62
Query: 105 QHFKVLRDSS-------GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 157
H+ + R + F + L+ + + + + P +V
Sbjct: 63 CHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVL-TEASLLAAYKKPIIEVV 121
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYR 217
+ FT + +L F +G+ + + +++Q WW
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA---------------------- 159
Query: 218 AELDGKEGLIPSNYIEMK 235
G GL+P+NY++++
Sbjct: 160 ---LGTTGLVPANYVQIQ 174
Score = 89.8 bits (222), Expect = 1e-21
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD---GV 283
+ + + +Y+ ++R +A +LL G FL+R S S PG++SL+V+ +D V
Sbjct: 4 NGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAV 62
Query: 284 QHFKVLRDSS-------GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 336
H+ + R + F + L+ + + + + P +V
Sbjct: 63 CHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVL-TEASLLAAYKKPIIEVV 121
Query: 337 QALYDFTPQEPGELEFRRDLKIK 359
+ FT + +L F + +++
Sbjct: 122 VGTFKFTGERETDLPFEQGERLE 144
Score = 67.5 bits (164), Expect = 1e-13
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK 56
+ F E +L F + + L+IL+ + +W+ A G GL+P+NY++++
Sbjct: 119 EVVVGTFKFTGERETDLPFEQGERLEILSKTNQ-DWWEARNALGTTGLVPANYVQIQ 174
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 137 bits (347), Expect = 8e-37
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 13/146 (8%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIEMKN----H 58
+A +D+ + E +LSF+K + L+I+N + W + G+ G IPSNY+ +
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65
Query: 59 DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
+WY+G+ITR ++ERLL + G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 66 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRT 136
SG F++ +FNSL +LV Y+
Sbjct: 126 LDSGGFYITSRTQFNSLQQLVAYYSK 151
Score = 134 bits (340), Expect = 9e-36
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 44/219 (20%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
ALYD+ + +L F++G+ + + + ++ WW
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA----------------------- 40
Query: 216 YRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAERLL--SNKHEGAFLIRVSESS 269
+ G+ G IPSNY+ + +WY+G+ITR ++ERLL + G FL+R SE++
Sbjct: 41 -HSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETT 99
Query: 270 PGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQD 323
G + LSV D V+H+K+ + SG F++ +FNSL +LV Y+ +
Sbjct: 100 KGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSK--HADGLC 157
Query: 324 VKLRDMVP-EECLVQALYDFTPQEPGELEFRRDLKIKRR 361
+L + P + Q L + P R L+++ +
Sbjct: 158 HRLTTVCPTSKPQTQGLAKDAWEIP-----RESLRLEVK 191
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 128 bits (323), Expect = 8e-37
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 54 EMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
+ + W++G ++R A +L+ G FL+R SE+ G+ L+ +H ++
Sbjct: 5 PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLS 64
Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMVP 152
+++G+ + + F S+ +++E+ R + S DV L VP
Sbjct: 65 LNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110
Score = 128 bits (323), Expect = 8e-37
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 233 EMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
+ + W++G ++R A +L+ G FL+R SE+ G+ L+ +H ++
Sbjct: 5 PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLS 64
Query: 290 RDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMVP 331
+++G+ + + F S+ +++E+ R + S DV L VP
Sbjct: 65 LNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 137 bits (347), Expect = 1e-36
Identities = 49/149 (32%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE----MKN 57
+A +D+ A ++LSF+K + +L E+ W++A KEG IPSNY+ ++
Sbjct: 12 VALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYVARVDSLET 69
Query: 58 HDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVL 110
+W++ I+R DAER L G+F+IR SE++ G +SLSV+ D V+H+K+
Sbjct: 70 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIR 129
Query: 111 RDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
+G F++ F++L ELV++++ +
Sbjct: 130 TLDNGGFYISPRSTFSTLQELVDHYKKGN 158
Score = 135 bits (342), Expect = 5e-36
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 46/223 (20%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+V ALYD+ +L F++GD + V + S WW
Sbjct: 6 GIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKA------------------- 45
Query: 212 DMNWYRAELDGKEGLIPSNYIE----MKNHDWYYGRITRADAERLLSNKH--EGAFLIRV 265
R+ KEG IPSNY+ ++ +W++ I+R DAER L G+F+IR
Sbjct: 46 -----RSLATRKEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRD 100
Query: 266 SESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVS 319
SE++ G +SLSV+ D V+H+K+ +G F++ F++L ELV++++ +
Sbjct: 101 SETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDG 160
Query: 320 RSQDVKLRDMVPEECLVQALYDFTPQEPGELEF-RRDLKIKRR 361
Q KL P E E R LK++++
Sbjct: 161 LCQ--KLSVPCMSSK------PQKPWEKDAWEIPRESLKLEKK 195
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 138 bits (349), Expect = 1e-36
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 36/194 (18%)
Query: 136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG 195
+S + + + + ALYD+ + +L F++G+ + + + ++ WW
Sbjct: 67 NSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA--- 123
Query: 196 ARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAER 251
+ G+ G IPSNY+ + +WY+G+ITR ++ER
Sbjct: 124 ---------------------HSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESER 162
Query: 252 LL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKF 303
LL + G FL+R SE++ G + LSV D V+H+K+ + SG F++ +F
Sbjct: 163 LLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQF 222
Query: 304 NSLNELVEYHRTAS 317
NSL +LV Y+ +
Sbjct: 223 NSLQQLVAYYSKHA 236
Score = 136 bits (343), Expect = 7e-36
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 13/148 (8%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIEMKN----H 58
+A +D+ + E +LSF+K + L+I+N + W + G+ G IPSNY+ +
Sbjct: 89 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 148
Query: 59 DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
+WY+G+ITR ++ERLL + G FL+R SE++ G + LSV D V+H+K+ +
Sbjct: 149 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 208
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
SG F++ +FNSL +LV Y+ +
Sbjct: 209 LDSGGFYITSRTQFNSLQQLVAYYSKHA 236
Score = 32.9 bits (75), Expect = 0.15
Identities = 7/45 (15%), Positives = 20/45 (44%)
Query: 315 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
+S + + + + ALYD+ + +L F++ +++
Sbjct: 67 NSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQ 111
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 127 bits (321), Expect = 2e-36
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 43 GKEGLIPSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKC 100
G G + ++ W++G I RADAE+ L S GAFLIR SES GDFSLSV
Sbjct: 1 GSSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLD 60
Query: 101 SDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
V+H+++ R G FFL F++LNE V Y+ T S
Sbjct: 61 EGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTS 99
Score = 127 bits (321), Expect = 2e-36
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKC 279
G G + ++ W++G I RADAE+ L S GAFLIR SES GDFSLSV
Sbjct: 1 GSSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLD 60
Query: 280 SDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
V+H+++ R G FFL F++LNE V Y+ T S
Sbjct: 61 EGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTS 99
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 127 bits (321), Expect = 3e-36
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 42 DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC 100
G G N ++ WYY R++R +AE +L +GAFLIR E ++++ +
Sbjct: 3 SGSSGDPVPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREG-TDSYAITFRA 61
Query: 101 SDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQ 158
V+H ++ RD F SL ELV Y+ ++ R ++LR V E L +
Sbjct: 62 RGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALYR--KMRLRYPVTPELLER 117
Score = 127 bits (321), Expect = 3e-36
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 221 DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC 279
G G N ++ WYY R++R +AE +L +GAFLIR E ++++ +
Sbjct: 3 SGSSGDPVPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREG-TDSYAITFRA 61
Query: 280 SDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQ 337
V+H ++ RD F SL ELV Y+ ++ R ++LR V E L +
Sbjct: 62 RGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALYR--KMRLRYPVTPELLER 117
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 125 bits (316), Expect = 1e-35
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
++ H WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S
Sbjct: 2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 115 GKFFLWV-VKFNSLNELVEYHRTAS 138
GK ++ +FN+L ELV +H T +
Sbjct: 62 GKLYVSSESRFNTLAELVHHHSTVA 86
Score = 125 bits (316), Expect = 1e-35
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
++ H WY+G ++R AE LLS+ G+FL+R SESSPG S+S++ V H+++ S
Sbjct: 2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 294 GKFFLWV-VKFNSLNELVEYHRTAS 317
GK ++ +FN+L ELV +H T +
Sbjct: 62 GKLYVSSESRFNTLAELVHHHSTVA 86
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 125 bits (316), Expect = 1e-35
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 43 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--- 98
G G + ++ ++WY+ ITR AE LL + EGAF++R S G +++SV
Sbjct: 1 GSSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMG 59
Query: 99 ---KCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
++H+++ ++ SG++++ F S+ EL+ YH+ +
Sbjct: 60 ARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA 103
Score = 125 bits (316), Expect = 1e-35
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--- 277
G G + ++ ++WY+ ITR AE LL + EGAF++R S G +++SV
Sbjct: 1 GSSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMG 59
Query: 278 ---KCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
++H+++ ++ SG++++ F S+ EL+ YH+ +
Sbjct: 60 ARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA 103
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 125 bits (315), Expect = 6e-35
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 21/151 (13%)
Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
L+ + +++ +Y+ +T +A LLS + G FLIR S F+LSVK G ++
Sbjct: 12 LVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKN 71
Query: 286 FKVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVSRSQDVKLRDMV------- 330
++ + G F L V +F+ + +LV ++ + S + +
Sbjct: 72 LRIQCE-GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQP 130
Query: 331 -----PEECLVQALYDFTPQEPGELEFRRDL 356
P +A Y ++ E L R L
Sbjct: 131 PAQALPGSTPKRAYYIYSGGEKIPLVLSRPL 161
Score = 125 bits (314), Expect = 7e-35
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 47 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
L+ + +++ +Y+ +T +A LLS + G FLIR S F+LSVK G ++
Sbjct: 12 LVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKN 71
Query: 107 FKVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVSRSQDVKLRDMV------- 151
++ + G F L V +F+ + +LV ++ + S + +
Sbjct: 72 LRIQCE-GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQP 130
Query: 152 -----PEECLVQALYDFTPQEPGELEFRR 175
P +A Y ++ E L R
Sbjct: 131 PAQALPGSTPKRAYYIYSGGEKIPLVLSR 159
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 123 bits (310), Expect = 1e-34
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 42 DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC 100
G G++P W +G ITR+ AE LLS +G+FL+R SES ++L V
Sbjct: 3 SGSSGMVPC---------WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLY 53
Query: 101 SDGVQHFKVLRDSSGKFFLWV------VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
+ V +++L + KF + F L++L+E+++ ++ L+ VP E
Sbjct: 54 RNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLV--THLQYPVPLE 111
Score = 123 bits (310), Expect = 1e-34
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 221 DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC 279
G G++P W +G ITR+ AE LLS +G+FL+R SES ++L V
Sbjct: 3 SGSSGMVPC---------WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLY 53
Query: 280 SDGVQHFKVLRDSSGKFFLWV------VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
+ V +++L + KF + F L++L+E+++ ++ L+ VP E
Sbjct: 54 RNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLV--THLQYPVPLE 111
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 122 bits (309), Expect = 1e-34
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 43 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 102
G G + +W++G I+R DAE LL ++ G+FLIRVS S G ++LS K
Sbjct: 1 GSSGSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQS 59
Query: 103 GVQHFKVLRDSSGKFFLWV--VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
HF V G F + V SL+ LV +H+ + + L ++
Sbjct: 60 SCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIE-PRRELLTQPCRQK 112
Score = 122 bits (309), Expect = 1e-34
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 281
G G + +W++G I+R DAE LL ++ G+FLIRVS S G ++LS K
Sbjct: 1 GSSGSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQS 59
Query: 282 GVQHFKVLRDSSGKFFLWV--VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
HF V G F + V SL+ LV +H+ + + L ++
Sbjct: 60 SCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIE-PRRELLTQPCRQK 112
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 121 bits (307), Expect = 2e-34
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 54 EMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
M + W++ IT +AE LL + +G+FL R S+S+PGDF+LSV+ + V H K+
Sbjct: 3 HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT 62
Query: 113 SSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 143
KF +L ELV+Y+ +
Sbjct: 63 GDYYDLYGGEKFATLAELVQYYMEHHGQLKE 93
Score = 121 bits (307), Expect = 2e-34
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 233 EMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
M + W++ IT +AE LL + +G+FL R S+S+PGDF+LSV+ + V H K+
Sbjct: 3 HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT 62
Query: 292 SSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 322
KF +L ELV+Y+ +
Sbjct: 63 GDYYDLYGGEKFATLAELVQYYMEHHGQLKE 93
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 121 bits (305), Expect = 3e-34
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+++ W++G+++R +AE LL + G FL+R S ++PG + L+ S +H + D
Sbjct: 3 QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-VDP 59
Query: 114 SGKFFLWVVKFNSLNELVEYHRTAS---VSRSQDVKLRDMVPEE 154
G +F S++ L+ YH +S ++ L+ V +
Sbjct: 60 EGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERK 103
Score = 121 bits (305), Expect = 3e-34
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+++ W++G+++R +AE LL + G FL+R S ++PG + L+ S +H + D
Sbjct: 3 QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-VDP 59
Query: 293 SGKFFLWVVKFNSLNELVEYHRTAS---VSRSQDVKLRDMVPEE 333
G +F S++ L+ YH +S ++ L+ V +
Sbjct: 60 EGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERK 103
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 121 bits (305), Expect = 3e-34
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
++ W++G+ITR AERLL G FL+R S + PGD++L V V+H++++ +
Sbjct: 4 KLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA 63
Query: 114 SGKFFLWVVKFNSLNELVEYHRTAS 138
S V F +L +LVE++ + +
Sbjct: 64 SKLSIDEEVYFENLMQLVEHYTSDA 88
Score = 121 bits (305), Expect = 3e-34
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
++ W++G+ITR AERLL G FL+R S + PGD++L V V+H++++ +
Sbjct: 4 KLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA 63
Query: 293 SGKFFLWVVKFNSLNELVEYHRTAS 317
S V F +L +LVE++ + +
Sbjct: 64 SKLSIDEEVYFENLMQLVEHYTSDA 88
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 120 bits (303), Expect = 8e-34
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 49 PSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 104
++ + DWY+G I R +A+ LL K +G FL+R S PG++ LSV
Sbjct: 4 HHHHHSHMKPLAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQR 61
Query: 105 QHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTAS--VSRSQDVKLRDMVPEE 154
+HF + + + F+++ +L+++H T +++ V L + +P++
Sbjct: 62 RHFII-QYVDNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112
Score = 120 bits (303), Expect = 8e-34
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 228 PSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 283
++ + DWY+G I R +A+ LL K +G FL+R S PG++ LSV
Sbjct: 4 HHHHHSHMKPLAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQR 61
Query: 284 QHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTAS--VSRSQDVKLRDMVPEE 333
+HF + + + F+++ +L+++H T +++ V L + +P++
Sbjct: 62 RHFII-QYVDNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 119 bits (302), Expect = 9e-34
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
+ W++G+I+ +A + L +G FL+R S PGD+ L V V H++VL
Sbjct: 2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG 61
Query: 115 GKFFLWVVKFNSLNELVEYHRTAS 138
V F +L ++VE++
Sbjct: 62 HLTIDEAVFFCNLMDMVEHYSKDK 85
Score = 119 bits (302), Expect = 9e-34
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
+ W++G+I+ +A + L +G FL+R S PGD+ L V V H++VL
Sbjct: 2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG 61
Query: 294 GKFFLWVVKFNSLNELVEYHRTAS 317
V F +L ++VE++
Sbjct: 62 HLTIDEAVFFCNLMDMVEHYSKDK 85
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 122 bits (306), Expect = 2e-33
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 37/180 (20%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
++ LV AL+ + P G+L F +G+ + + + WW
Sbjct: 8 SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILE-QSGEWWKA----------------- 49
Query: 210 EDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLL--SNKHEGAFLI 263
++ G+EG IP N++ ++ W++ ++R DAER L G+FLI
Sbjct: 50 -------QSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLI 102
Query: 264 RVSESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 317
R SES+ G FSLSV+ D V+H+K+ +G F++ + F L+ELV ++ AS
Sbjct: 103 RESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 162
Score = 121 bits (305), Expect = 2e-33
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 16/149 (10%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMKN 57
IA H + + + +L F K + L+IL W++A+ G+EG IP N++ ++
Sbjct: 16 IALHSYEPSHDGDLGFEKGEQLRILE--QSGEWWKAQSLTTGQEGFIPFNFVAKANSLEP 73
Query: 58 HDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVL 110
W++ ++R DAER L G+FLIR SES+ G FSLSV+ D V+H+K+
Sbjct: 74 EPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR 133
Query: 111 RDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
+G F++ + F L+ELV ++ AS
Sbjct: 134 NLDNGGFYISPRITFPGLHELVRHYTNAS 162
Score = 35.8 bits (82), Expect = 0.010
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 329 MVPEECLVQALYDFTPQEPGELEFRRD 355
++ LV AL+ + P G+L F +
Sbjct: 8 SPLQDNLVIALHSYEPSHDGDLGFEKG 34
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 119 bits (300), Expect = 2e-33
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 57 NHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
+ W++G I+R++A R L GAFLIRVSE D+ LSV+ + V+H+K+ R +
Sbjct: 1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG 60
Query: 115 GKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
G+ L V F SL ELV YHR S+S ++L
Sbjct: 61 GRLHLNEAVSFLSLPELVNYHRAQSLSH--GLRLAAPCR 97
Score = 119 bits (300), Expect = 2e-33
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 236 NHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
+ W++G I+R++A R L GAFLIRVSE D+ LSV+ + V+H+K+ R +
Sbjct: 1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG 60
Query: 294 GKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 331
G+ L V F SL ELV YHR S+S ++L
Sbjct: 61 GRLHLNEAVSFLSLPELVNYHRAQSLSH--GLRLAAPCR 97
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 119 bits (300), Expect = 2e-33
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 57 NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
+WYYG +TR AE L EG FLIR SESSP DFS+S+K S +HFKV +
Sbjct: 4 GSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKV-QLVDN 62
Query: 116 KFFLWVVKFNSLNELVEYHRTASVSRSQD 144
+ + +F++++ELVE+++ A + S+
Sbjct: 63 VYCIGQRRFHTMDELVEHYKKAPIFTSEH 91
Score = 119 bits (300), Expect = 2e-33
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 236 NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
+WYYG +TR AE L EG FLIR SESSP DFS+S+K S +HFKV +
Sbjct: 4 GSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKV-QLVDN 62
Query: 295 KFFLWVVKFNSLNELVEYHRTASVSRSQD 323
+ + +F++++ELVE+++ A + S+
Sbjct: 63 VYCIGQRRFHTMDELVEHYKKAPIFTSEH 91
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 125 bits (314), Expect = 2e-33
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 29/196 (14%)
Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKG 199
+ LR + + + + +L R + +
Sbjct: 113 RTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQRKIN------ 166
Query: 200 LFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH----DWYYGRITRADAERLLSN 255
W + + ++ + H WY G+I R AE +LS
Sbjct: 167 --------------EWLGIKNETEDQYSLMEDEDALPHHEERTWYVGKINRTQAEEMLSG 212
Query: 256 KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHR 314
K +G FLIR S S G ++ SV +H + R ++G F + SL ELV +++
Sbjct: 213 KRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQ 271
Query: 315 TASVSRSQD---VKLR 327
AS+ + D V L
Sbjct: 272 HASLVQHNDALTVTLA 287
Score = 121 bits (305), Expect = 4e-32
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 14/161 (8%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKIL-----NMEDDMNWYRAELDGKEGLIPSNYIEM 55
E + + +L + Q L L W + + ++ +
Sbjct: 128 REIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQRKINEWLGIKNETEDQYSLMEDEDA 187
Query: 56 KNH----DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
H WY G+I R AE +LS K +G FLIR S S G ++ SV +H + R
Sbjct: 188 LPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYR 246
Query: 112 DSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQD---VKLR 148
++G F + SL ELV +++ AS+ + D V L
Sbjct: 247 TATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLA 287
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 117 bits (294), Expect = 1e-32
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 55 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
M Y+G+I+R E+LL + +G++L+R SES PG + L V + ++V +
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 114 SGKFFL------WVVKFNSLNELVEYHRTAS 138
+G + F + L+ +
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91
Score = 117 bits (294), Expect = 1e-32
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 234 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
M Y+G+I+R E+LL + +G++L+R SES PG + L V + ++V +
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 293 SGKFFL------WVVKFNSLNELVEYHRTAS 317
+G + F + L+ +
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 116 bits (292), Expect = 3e-32
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
P + + W G R AE LL K +G FL+R S S G ++ SV V+H
Sbjct: 3 PIPHHDE--KTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCV 59
Query: 109 VLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQD---VKLR 148
+ + ++G F ++SL ELV +++ S+ + D V L
Sbjct: 60 INKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLA 103
Score = 116 bits (292), Expect = 3e-32
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
P + + W G R AE LL K +G FL+R S S G ++ SV V+H
Sbjct: 3 PIPHHDE--KTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCV 59
Query: 288 VLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQD---VKLR 327
+ + ++G F ++SL ELV +++ S+ + D V L
Sbjct: 60 INKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLA 103
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 116 bits (292), Expect = 4e-32
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 55 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
M Y+G+I+R E+LL + +G++L+R SES PG + L V + ++V +
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 114 SGKFFL------WVVKFNSLNELVEYHRTAS 138
+G + F + L+ +
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91
Score = 116 bits (292), Expect = 4e-32
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 234 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
M Y+G+I+R E+LL + +G++L+R SES PG + L V + ++V +
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 293 SGKFFL------WVVKFNSLNELVEYHRTAS 317
+G + F + L+ +
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 116 bits (292), Expect = 5e-32
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFK 108
+N + ++N +WY+G I+R + L + +G FL+R + + GD++L+++ + K
Sbjct: 3 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 148
+ F + F+S+ EL+ ++R S+++ VKL
Sbjct: 63 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLL 105
Score = 116 bits (292), Expect = 5e-32
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFK 287
+N + ++N +WY+G I+R + L + +G FL+R + + GD++L+++ + K
Sbjct: 3 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 327
+ F + F+S+ EL+ ++R S+++ VKL
Sbjct: 63 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLL 105
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 115 bits (289), Expect = 6e-32
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 57 NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
+ +Y+G +T+ + E LL +G FLIR SES PG L V V +++ R+ G
Sbjct: 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61
Query: 116 KFFLW------VVKFNSLNELVEYHRTAS 138
+ + F +L ELV +
Sbjct: 62 YYRIETDAHTPRTIFPNLQELVSKYGKPG 90
Score = 115 bits (289), Expect = 6e-32
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 236 NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
+ +Y+G +T+ + E LL +G FLIR SES PG L V V +++ R+ G
Sbjct: 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61
Query: 295 KFFLW------VVKFNSLNELVEYHRTAS 317
+ + F +L ELV +
Sbjct: 62 YYRIETDAHTPRTIFPNLQELVSKYGKPG 90
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 116 bits (291), Expect = 3e-31
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 35 NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDF 94
E + ++ + +++ N+ Y+G + + AE LL K EG FL+R S F
Sbjct: 11 VDLGTENLYFQSMLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLF 70
Query: 95 SLSVKCSDGVQHFKVLRDSSGKFFLW-----VVKFNSLNELVEYHRTASVSRSQDVKLRD 149
S+S + H ++ + + F V + L+E+++ S + L
Sbjct: 71 SVSFRRYSRSLHARIEQW-NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLST 129
Query: 150 MVP 152
+
Sbjct: 130 PLI 132
Score = 116 bits (291), Expect = 3e-31
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 214 NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDF 273
E + ++ + +++ N+ Y+G + + AE LL K EG FL+R S F
Sbjct: 11 VDLGTENLYFQSMLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLF 70
Query: 274 SLSVKCSDGVQHFKVLRDSSGKFFLW-----VVKFNSLNELVEYHRTASVSRSQDVKLRD 328
S+S + H ++ + + F V + L+E+++ S + L
Sbjct: 71 SVSFRRYSRSLHARIEQW-NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLST 129
Query: 329 MVP 331
+
Sbjct: 130 PLI 132
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 111 bits (280), Expect = 1e-30
Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 56 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+ W++GRI+R ++ R++ + +G FL+R S+S+P F L++ +++F++L
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 114 SGKFFLWVV-----KFNSLNELVEYHRTAS 138
+ + KF+ L +LV++++
Sbjct: 63 DDGQTFFSLDDGNTKFSDLIQLVDFYQLNK 92
Score = 111 bits (280), Expect = 1e-30
Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 235 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+ W++GRI+R ++ R++ + +G FL+R S+S+P F L++ +++F++L
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 293 SGKFFLWVV-----KFNSLNELVEYHRTAS 317
+ + KF+ L +LV++++
Sbjct: 63 DDGQTFFSLDDGNTKFSDLIQLVDFYQLNK 92
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 113 bits (285), Expect = 2e-30
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 48 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
+ E+ WY+G +T +A+ L EG FLIR S S ++SVK S G +
Sbjct: 7 LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNL 66
Query: 108 KVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEEC-LVQ 158
++ GKF L + +F+S+ L++Y+ + + L +
Sbjct: 67 RI-EYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTK 125
Query: 159 ALYDFTP 165
LY P
Sbjct: 126 PLYTSAP 132
Score = 113 bits (285), Expect = 2e-30
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
+ E+ WY+G +T +A+ L EG FLIR S S ++SVK S G +
Sbjct: 7 LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNL 66
Query: 287 KVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEEC-LVQ 337
++ GKF L + +F+S+ L++Y+ + + L +
Sbjct: 67 RI-EYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTK 125
Query: 338 ALYDFTP 344
LY P
Sbjct: 126 PLYTSAP 132
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 111 bits (279), Expect = 2e-30
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 55 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 107
++ W++ ++R DAER L G+FLIR SES+ G FSLSV+ D V+H+
Sbjct: 1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60
Query: 108 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
K+ +G F++ + F L+ELV ++ AS
Sbjct: 61 KIRNLDNGGFYISPRITFPGLHELVRHYTNAS 92
Score = 111 bits (279), Expect = 2e-30
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 286
++ W++ ++R DAER L G+FLIR SES+ G FSLSV+ D V+H+
Sbjct: 1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60
Query: 287 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
K+ +G F++ + F L+ELV ++ AS
Sbjct: 61 KIRNLDNGGFYISPRITFPGLHELVRHYTNAS 92
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 110 bits (278), Expect = 3e-30
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 55 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 107
++ +WY+G++ R DAER L G FLIR SE++ G +SLS++ D V+H+
Sbjct: 2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 108 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
K+ + +G +++ +F +L +LV+++ +
Sbjct: 62 KIRKLDNGGYYITTRAQFETLQQLVQHYSERA 93
Score = 110 bits (278), Expect = 3e-30
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 286
++ +WY+G++ R DAER L G FLIR SE++ G +SLS++ D V+H+
Sbjct: 2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 287 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
K+ + +G +++ +F +L +LV+++ +
Sbjct: 62 KIRKLDNGGYYITTRAQFETLQQLVQHYSERA 93
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 111 bits (279), Expect = 3e-30
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQH 106
+ + W++GRI+R +++RL+ + +G FL+R S+ +P F LS+ V+H
Sbjct: 5 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKH 64
Query: 107 FKVLR-DSSGKFFLWV----VKFNSLNELVEYHRT 136
+ +L + G+ + + +F L +LVE+H+
Sbjct: 65 YLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQL 99
Score = 111 bits (279), Expect = 3e-30
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQH 285
+ + W++GRI+R +++RL+ + +G FL+R S+ +P F LS+ V+H
Sbjct: 5 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKH 64
Query: 286 FKVLR-DSSGKFFLWV----VKFNSLNELVEYHRT 315
+ +L + G+ + + +F L +LVE+H+
Sbjct: 65 YLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQL 99
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 111 bits (279), Expect = 5e-30
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 42 DGKEGLIPSNYIEMKN----HDWYYGRI-TRADAERLL------SNKHEGAFLIRVSESS 90
G G P W++ ++ +R AE+LL + +G FL+R SE+
Sbjct: 3 SGSSG-EPVQDTPPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETF 61
Query: 91 PGDFSLSVKCSDGVQHFKVLR---DSSGKFFLW-VVKFNSLNELVEYHRTAS-VSRSQDV 145
P D++LS S VQH ++ + K++L + FNS+ L++++R A ++
Sbjct: 62 PNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFEL 121
Query: 146 KLRDMVP 152
+L D VP
Sbjct: 122 RLTDPVP 128
Score = 111 bits (279), Expect = 5e-30
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 221 DGKEGLIPSNYIEMKN----HDWYYGRI-TRADAERLL------SNKHEGAFLIRVSESS 269
G G P W++ ++ +R AE+LL + +G FL+R SE+
Sbjct: 3 SGSSG-EPVQDTPPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETF 61
Query: 270 PGDFSLSVKCSDGVQHFKVLR---DSSGKFFLW-VVKFNSLNELVEYHRTAS-VSRSQDV 324
P D++LS S VQH ++ + K++L + FNS+ L++++R A ++
Sbjct: 62 PNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFEL 121
Query: 325 KLRDMVP 331
+L D VP
Sbjct: 122 RLTDPVP 128
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 111 bits (278), Expect = 7e-30
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 48 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
+ ++ WY+G ITR +AE L+N +G+FL+R S SLS + H
Sbjct: 14 LTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHT 73
Query: 108 KVLRDSSGKFFLW----VVKFNSLNELVEYHRTASVS 140
++ +G+F + V S+ +L+E+ S +
Sbjct: 74 RIEHS-NGRFSFYEQPDVEGHTSIVDLIEHSIGDSEN 109
Score = 111 bits (278), Expect = 7e-30
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
+ ++ WY+G ITR +AE L+N +G+FL+R S SLS + H
Sbjct: 14 LTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHT 73
Query: 287 KVLRDSSGKFFLW----VVKFNSLNELVEYHRTASVS 319
++ +G+F + V S+ +L+E+ S +
Sbjct: 74 RIEHS-NGRFSFYEQPDVEGHTSIVDLIEHSIGDSEN 109
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 109 bits (275), Expect = 1e-29
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCS----D 102
P +E+ W++ I+R DAER L G+FLIR SES+ G FSLSVK +
Sbjct: 5 PVETLEV--EKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62
Query: 103 GVQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
V+H+K+ +G +++ + F +L LV+++
Sbjct: 63 VVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKG 99
Score = 109 bits (275), Expect = 1e-29
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCS----D 281
P +E+ W++ I+R DAER L G+FLIR SES+ G FSLSVK +
Sbjct: 5 PVETLEV--EKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62
Query: 282 GVQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 317
V+H+K+ +G +++ + F +L LV+++
Sbjct: 63 VVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKG 99
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 107 bits (270), Expect = 4e-29
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 28/126 (22%)
Query: 134 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE 193
++S S + + ALYD+ + +L F++G+ + + ++ WW
Sbjct: 7 GASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEA- 65
Query: 194 IGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE----MKNHDWYYGRITRADA 249
R+ GK G IPSNY+ ++ +WY+G++ R DA
Sbjct: 66 -----------------------RSIATGKSGYIPSNYVVPADSIQAEEWYFGKMGRKDA 102
Query: 250 ERLLSN 255
E S+
Sbjct: 103 ESGPSS 108
Score = 100 bits (251), Expect = 3e-26
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIE----MKNH 58
+A +D+ A ++LSF+K + +I+N + W + GK G IPSNY+ ++
Sbjct: 31 VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSIQAE 90
Query: 59 DWYYGRITRADAERLLSN 76
+WY+G++ R DAE S+
Sbjct: 91 EWYFGKMGRKDAESGPSS 108
Score = 40.9 bits (96), Expect = 5e-05
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 313 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
++S S + + ALYD+ + +L F++ + +
Sbjct: 7 GASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQ 53
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 107 bits (270), Expect = 6e-29
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
+ WY+G I RA+ LL H G FL+R S+ ++ LSV +HF + +
Sbjct: 12 PLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQ-GKQEYVLSVLWDGLPRHFII-QSL 67
Query: 114 SGKFFLWVVKFNSLNELVEYHRT--ASVSRSQDVKLRDMVP 152
+ L F S+ L+++ + +++ V L VP
Sbjct: 68 DNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVP 108
Score = 107 bits (270), Expect = 6e-29
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
+ WY+G I RA+ LL H G FL+R S+ ++ LSV +HF + +
Sbjct: 12 PLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQ-GKQEYVLSVLWDGLPRHFII-QSL 67
Query: 293 SGKFFLWVVKFNSLNELVEYHRT--ASVSRSQDVKLRDMVP 331
+ L F S+ L+++ + +++ V L VP
Sbjct: 68 DNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVP 108
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 108 bits (270), Expect = 1e-28
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 48 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
+ + +++ +Y+ +T +A LLS + G FLIR S F+LSVK G ++
Sbjct: 24 VVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNL 83
Query: 108 KVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVS 140
++ + G F L V +F+ + +LV ++
Sbjct: 84 RI-QXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQAL 123
Score = 108 bits (270), Expect = 1e-28
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
+ + +++ +Y+ +T +A LLS + G FLIR S F+LSVK G ++
Sbjct: 24 VVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNL 83
Query: 287 KVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVS 319
++ + G F L V +F+ + +LV ++
Sbjct: 84 RI-QXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQAL 123
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 106 bits (265), Expect = 2e-28
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 60 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---- 115
WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+ +
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61
Query: 116 -------------KFFLWVVKFNSLNELVEYHRTASVS 140
+ + +F+SL L+E+++ +
Sbjct: 62 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLD 99
Score = 106 bits (265), Expect = 2e-28
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---- 294
WY+GR++R +A LL + G FL+R S +SPGD+ LSV + V H+ +
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61
Query: 295 -------------KFFLWVVKFNSLNELVEYHRTASVS 319
+ + +F+SL L+E+++ +
Sbjct: 62 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLD 99
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 106 bits (266), Expect = 2e-28
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 55 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHF 107
+ ++DW+ G I+R+ +E+LL K EGAF++R S G +++S+ V+H+
Sbjct: 8 LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHY 66
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
V ++ K +L F+S+ +L+ YH+ S
Sbjct: 67 HVHTNAENKLYLAENYCFDSIPKLIHYHQHNS 98
Score = 106 bits (266), Expect = 2e-28
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHF 286
+ ++DW+ G I+R+ +E+LL K EGAF++R S G +++S+ V+H+
Sbjct: 8 LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHY 66
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
V ++ K +L F+S+ +L+ YH+ S
Sbjct: 67 HVHTNAENKLYLAENYCFDSIPKLIHYHQHNS 98
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 108 bits (271), Expect = 6e-28
Identities = 54/290 (18%), Positives = 103/290 (35%), Gaps = 82/290 (28%)
Query: 58 HDWYYGRIT-----RADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
W++G++ R AERLL+ + + G F ++R+
Sbjct: 4 EKWFHGKLGAGRDGRHIAERLLTEY------CIETGAPDGSF--------------LVRE 43
Query: 113 SS---GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPG 169
S G + L S R+ V+ C + + Q+ G
Sbjct: 44 SETFVGDYTL------------------SFWRNGKVQ-------HCRIHSR-----QDAG 73
Query: 170 ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPS 229
+F D + D + + E + +
Sbjct: 74 TPKFFLTDNLVFDSLYDLITHY-------------------QQVPLRCNEFEMRLSEPVP 114
Query: 230 NYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
++ +WY+ +TRA AE +L +GAFL+R + P +++S + ++H +V
Sbjct: 115 QTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRV 173
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQA 338
++ L +F+SL +L+ Y+ + R +KLR + EE L +
Sbjct: 174 QQE-GQTVMLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEEALEKI 220
Score = 106 bits (265), Expect = 4e-27
Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 27 ILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIR 85
++ + E + + ++ +WY+ +TRA AE +L +GAFL+R
Sbjct: 91 LITHYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVR 150
Query: 86 VSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDV 145
+ P +++S + ++H +V ++ L +F+SL +L+ Y+ + R +
Sbjct: 151 KR-NEPNSYAISFRAEGKIKHCRVQQE-GQTVMLGNSEFDSLVDLISYYEKHPLYR--KM 206
Query: 146 KLRDMVPEECLVQA 159
KLR + EE L +
Sbjct: 207 KLRYPINEEALEKI 220
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 104 bits (262), Expect = 1e-27
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG---- 103
+ IEM ++WY +TR+ AE+LL + EG F++R S S G +++SV
Sbjct: 4 AEDSIEM--YEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQ 60
Query: 104 --VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
++H+ V +++L F+++ EL+ YH+ S +L+ V ++
Sbjct: 61 GVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGL--ISRLKYPVSQQ 112
Score = 104 bits (262), Expect = 1e-27
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG---- 282
+ IEM ++WY +TR+ AE+LL + EG F++R S S G +++SV
Sbjct: 4 AEDSIEM--YEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQ 60
Query: 283 --VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
++H+ V +++L F+++ EL+ YH+ S +L+ V ++
Sbjct: 61 GVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGL--ISRLKYPVSQQ 112
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 104 bits (260), Expect = 3e-27
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 43 GKEGLIPSNYIEMKN----HDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGD--FS 95
G G S + + + WY G R AE L + +G+FLIR S ++
Sbjct: 4 GSSGPFNSTFADQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYT 63
Query: 96 LSVKCSDGVQHFKVLRDSSGKFFLWVVK------FNSLNELVEYHRTAS 138
L + V + V + K + K F S+ E+V H+
Sbjct: 64 LVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNP 112
Score = 104 bits (260), Expect = 3e-27
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 222 GKEGLIPSNYIEMKN----HDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGD--FS 274
G G S + + + WY G R AE L + +G+FLIR S ++
Sbjct: 4 GSSGPFNSTFADQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYT 63
Query: 275 LSVKCSDGVQHFKVLRDSSGKFFLWVVK------FNSLNELVEYHRTAS 317
L + V + V + K + K F S+ E+V H+
Sbjct: 64 LVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNP 112
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 108 bits (271), Expect = 8e-27
Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSES-SPGDFSLSVKCSDGVQHFK 287
+N + ++N +WY+G I+R + L + +G FL+R + + GD++L+++ + K
Sbjct: 2 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLRDMVPEECLVQALYDFTP 344
+ F + F+S+ EL+ ++R S+++ VKL V + Q + +
Sbjct: 62 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKEDNI 121
Query: 345 QEPGELEFRRDLKIKRRKS 363
+ G+ + + KS
Sbjct: 122 EAVGK-KLHEYNTQFQEKS 139
Score = 107 bits (269), Expect = 1e-26
Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSES-SPGDFSLSVKCSDGVQHFK 108
+N + ++N +WY+G I+R + L + +G FL+R + + GD++L+++ + K
Sbjct: 2 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD 144
+ F + F+S+ EL+ ++R S+++
Sbjct: 62 IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNP 97
Score = 91.8 bits (227), Expect = 8e-21
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 10/139 (7%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNM----EDDMNWYRAELDGKEGLIPSNYIEMK 56
E + + +L + Q L L + +N + + ++ E
Sbjct: 236 REIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLGNENTEDQYSLVEDDEDL 295
Query: 57 NH----DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
H W G R AE LL K +G FL+R S S G ++ SV V+H + +
Sbjct: 296 PHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKT 354
Query: 113 SSGKFFLW-VVKFNSLNEL 130
++G F ++SL EL
Sbjct: 355 ATGYGFAEPYNLYSSLKEL 373
Score = 91.0 bits (225), Expect = 1e-20
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
+ W G R AE LL K +G FL+R S S G ++ SV V+H
Sbjct: 292 DEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCV 350
Query: 288 VLRDSSGKFFLW-VVKFNSLNEL 309
+ + ++G F ++SL EL
Sbjct: 351 INKTATGYGFAEPYNLYSSLKEL 373
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 98.5 bits (246), Expect = 4e-26
Identities = 40/62 (64%), Positives = 50/62 (80%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
MEAIAK+DF ATA+DELSF++ +LK+LN E D NWY+AEL+GK+G IP NYIEMK H
Sbjct: 10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPE 69
Query: 61 YY 62
+
Sbjct: 70 FI 71
Score = 89.3 bits (222), Expect = 1e-22
Identities = 33/90 (36%), Positives = 40/90 (44%), Gaps = 25/90 (27%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
A YDF EL F+RGD++ V LN E
Sbjct: 7 VGSMEAIAKYDFKATADDELSFKRGDILKV-------------------------LNEEC 41
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKNHDWYY 241
D NWY+AEL+GK+G IP NYIEMK H +
Sbjct: 42 DQNWYKAELNGKDGFIPKNYIEMKPHPEFI 71
Score = 35.0 bits (81), Expect = 0.004
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
A YDF EL F+R
Sbjct: 7 VGSMEAIAKYDFKATADDELSFKRG 31
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 96.3 bits (240), Expect = 1e-24
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 55 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHF 107
++ ++WY I+R AE+LL + EGAF++R S +PG +++SV ++H+
Sbjct: 6 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 64
Query: 108 KV--LRDSSGKFFLWV-VKFNSLNELVEYHR 135
+ DS ++++ F+S+ L++YH+
Sbjct: 65 HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQ 95
Score = 96.3 bits (240), Expect = 1e-24
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHF 286
++ ++WY I+R AE+LL + EGAF++R S +PG +++SV ++H+
Sbjct: 6 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 64
Query: 287 KV--LRDSSGKFFLWV-VKFNSLNELVEYHR 314
+ DS ++++ F+S+ L++YH+
Sbjct: 65 HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQ 95
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 92.1 bits (229), Expect = 1e-23
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY---ILN 208
+A++D EL F+ GDVI V D S++ WW G+I +G FPA++ +N
Sbjct: 8 DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 67
Query: 209 MEDDMNWYRAELDG 222
ED++ G
Sbjct: 68 QEDEVEEGSGPSSG 81
Score = 68.2 bits (167), Expect = 7e-15
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
+ A A D A EL+F+ V+K+L+ + +W+ ++D +EG P++++ + +
Sbjct: 11 VSAEAVWDHVTMANRELAFKAGDVIKVLDASNK-DWWWGQIDDEEGWFPASFVRLWVNQ 68
Score = 38.5 bits (90), Expect = 2e-04
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+A++D EL F+
Sbjct: 8 DSIVSAEAVWDHVTMANRELAFKAG 32
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 91.6 bits (228), Expect = 2e-23
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 127 LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSD 186
+N V +H + R + +AL+DFT EL F+ GDVI + R +
Sbjct: 1 MNHKVHHHHHHHMDRMAAPR----------AEALFDFTGNSKLELNFKAGDVIFLLSRIN 50
Query: 187 QHWWHGEIGARKGLFPATYI 206
+ W G + G+FP +++
Sbjct: 51 KDWLEGTVRGATGIFPLSFV 70
Score = 68.5 bits (168), Expect = 6e-15
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A A DF ++ EL+F+ V+ +L+ + +W + G G+ P +++++
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINK-DWLEGTVRGATGIFPLSFVKI 72
Score = 40.4 bits (95), Expect = 5e-05
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 306 LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
+N V +H + R + +AL+DFT EL F+
Sbjct: 1 MNHKVHHHHHHHMDRMAAPR----------AEALFDFTGNSKLELNFKAG 40
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 90.7 bits (226), Expect = 3e-23
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
E VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++ R+G+FP+ Y+
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 66.4 bits (163), Expect = 2e-14
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DFN EL+F++ V+ ++N +D NW+ +L+ + G+ PSNY+
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDP-NWWEGQLNNRRGIFPSNYVC 55
Score = 39.8 bits (94), Expect = 4e-05
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 332 EECLVQALYDFTPQEPGELEFRRD 355
E VQAL+DF PQE GEL F+R
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRG 24
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 91.2 bits (227), Expect = 3e-23
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
M + LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ +
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 60
Query: 210 EDDMNWYRAELDG 222
+ + R L G
Sbjct: 61 DPAQSASRENLGG 73
Score = 70.0 bits (172), Expect = 2e-15
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVK 58
Score = 36.9 bits (86), Expect = 6e-04
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 329 MVPEECLVQALYDFTPQEPGELEFRR 354
M + LV ALYD+ + P E+ ++
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKK 26
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 93.0 bits (231), Expect = 3e-23
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 21/110 (19%)
Query: 48 IPSNYIEMKN---HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKC---- 100
S + + WY ++R A LL +K GAFLIR S S G + L++K
Sbjct: 7 HSSGLVPRGSDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPP 66
Query: 101 -----------SDGVQHFKVLRDSSGKFFLWV---VKFNSLNELVEYHRT 136
V+HF + G F SL+ LV H
Sbjct: 67 PSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSI 116
Score = 93.0 bits (231), Expect = 3e-23
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 21/110 (19%)
Query: 227 IPSNYIEMKN---HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKC---- 279
S + + WY ++R A LL +K GAFLIR S S G + L++K
Sbjct: 7 HSSGLVPRGSDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPP 66
Query: 280 -----------SDGVQHFKVLRDSSGKFFLWV---VKFNSLNELVEYHRT 315
V+HF + G F SL+ LV H
Sbjct: 67 PSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSI 116
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 90.9 bits (226), Expect = 4e-23
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
A + +T + EL FRRGDV+ + +R+ WW GE +GL P YI
Sbjct: 8 EGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62
Score = 77.8 bits (192), Expect = 2e-18
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN--- 57
+EA+A + ELSFR+ VL++ +W+R E +G GLIP YI +
Sbjct: 11 VEAVACFAYTGRTAQELSFRRGDVLRLHERASS-DWWRGEHNGMRGLIPHKYITLPAGTE 69
Query: 58 -HDWYYG 63
G
Sbjct: 70 KQVVGAG 76
Score = 38.9 bits (91), Expect = 2e-04
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
A + +T + EL FRR
Sbjct: 8 EGVVEAVACFAYTGRTAQELSFRRG 32
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 89.9 bits (224), Expect = 5e-23
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V+ALY F PQ+ G+L + GD + + ++ W+ G R G+FPA Y+
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54
Score = 66.8 bits (164), Expect = 1e-14
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A + F+ + +L + +++L WY+ +G+ G+ P+NY++
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSP-EWYKGSCNGRTGIFPANYVK 55
Score = 39.4 bits (93), Expect = 5e-05
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 336 VQALYDFTPQEPGELEFRRDLKIK 359
V+ALY F PQ+ G+L + K++
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQ 28
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 89.9 bits (224), Expect = 5e-23
Identities = 29/53 (54%), Positives = 34/53 (64%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
VQAL+DF PQE GEL FRRGD I V D SD +WW G + G+FP Y+
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 67.2 bits (165), Expect = 9e-15
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A DF+ + EL FR+ + +++ D NW++ G+ G+ P NY+
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDP-NWWKGACHGQTGMFPRNYVT 55
Score = 39.5 bits (93), Expect = 6e-05
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 333 ECLVQALYDFTPQEPGELEFRRD 355
VQAL+DF PQE GEL FRR
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRG 24
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 90.2 bits (224), Expect = 9e-23
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 28/104 (26%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
E+ +V ALYD+ P +L F++GD + V + S WW
Sbjct: 2 EDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESG-EWW---------------------- 38
Query: 213 MNWYRAELDGKEGLIPSNYIEMKNH---DWYYGRITRADAERLL 253
R+ KEG IPSNY+ + GR R AER+
Sbjct: 39 --KARSLATRKEGYIPSNYVARVDSGGGTSGGGRHRRRQAERMS 80
Score = 81.7 bits (202), Expect = 1e-19
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKNH--- 58
+A +D+ + + D+LSF+K + +L + W++A KEG IPSNY+ +
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYVARVDSGGG 64
Query: 59 DWYYGRITRADAERLL 74
GR R AER+
Sbjct: 65 TSGGGRHRRRQAERMS 80
Score = 37.4 bits (87), Expect = 7e-04
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 332 EECLVQALYDFTPQEPGELEFRR 354
E+ +V ALYD+ P +L F++
Sbjct: 2 EDIIVVALYDYVSWSPDDLSFQK 24
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 91.4 bits (227), Expect = 1e-22
Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 49 PSNYIEMKNH-DWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCS---DG 103
+Y+++ N + ++R +A +L N G ++R S ++S++++
Sbjct: 5 AMDYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPG-SDSRNYSITIRQEIDIPR 63
Query: 104 VQHFKVLRDSSGKFFLWV--VKFNSLNELVEYHRTAS 138
++H+KV+ V +L +++Y +
Sbjct: 64 IKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYFVKET 100
Score = 91.4 bits (227), Expect = 1e-22
Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 228 PSNYIEMKNH-DWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCS---DG 282
+Y+++ N + ++R +A +L N G ++R S ++S++++
Sbjct: 5 AMDYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPG-SDSRNYSITIRQEIDIPR 63
Query: 283 VQHFKVLRDSSGKFFLWV--VKFNSLNELVEYHRTAS 317
++H+KV+ V +L +++Y +
Sbjct: 64 IKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYFVKET 100
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 89.6 bits (223), Expect = 1e-22
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALYDF P+ GEL FR GD+IT+T++ D++W+ G + + G FP +Y+
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYV 65
Score = 68.4 bits (168), Expect = 4e-15
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A +DF + EL FR+ ++ + N D+ NWY L G+ G P +Y+++
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDE-NWYEGMLHGQSGFFPLSYVQV 67
Score = 37.6 bits (88), Expect = 4e-04
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
+ALYDF P+ GEL FR I
Sbjct: 16 CKALYDFEPENDGELGFREGDLI 38
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 89.1 bits (222), Expect = 1e-22
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL+DFT EL F+ GDVI + R ++ W G + G+FP +++
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
Score = 71.0 bits (175), Expect = 5e-16
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
M A A DF ++ EL+F+ V+ +L+ + +W + G G+ P +++++
Sbjct: 5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINK-DWLEGTVRGATGIFPLSFVKI 58
Score = 36.7 bits (86), Expect = 6e-04
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+AL+DFT EL F+
Sbjct: 7 AEALFDFTGNSKLELNFKAG 26
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 88.8 bits (221), Expect = 1e-22
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ + V+AL+ + +P +LEF+ GD+I V + ++ W GE + G+FP ++
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
Score = 67.6 bits (166), Expect = 8e-15
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A + AT ++L F++ ++ +L+ ++ W E GK G+ P ++E
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNE-EWLEGESKGKVGIFPKVFVE 58
Score = 38.3 bits (90), Expect = 2e-04
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 330 VPEECLVQALYDFTPQEPGELEFRR 354
+ + V+AL+ + +P +LEF+
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQE 26
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 89.3 bits (222), Expect = 1e-22
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
E A +D+ + EL F++G + + R+ WW G GL P YI+ +
Sbjct: 7 GEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDT 66
Query: 212 D 212
Sbjct: 67 S 67
Score = 77.4 bits (191), Expect = 3e-18
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
+EAIAK D+ ELSF+K L + D +W+ +G +GLIP YI +++
Sbjct: 10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASD-DWWEGRHNGIDGLIPHQYIVVQDTS 67
Score = 37.3 bits (87), Expect = 5e-04
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKI 358
E A +D+ + EL F++ +
Sbjct: 7 GEPIEAIAKFDYVGRTARELSFKKGASL 34
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 88.9 bits (221), Expect = 2e-22
Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMK 56
E IAK++F+ TAE +L F K VL I+ + D NWY+A+ G+EG+IP+NY++ +
Sbjct: 12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68
Score = 80.4 bits (199), Expect = 3e-19
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 26/86 (30%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
P A Y+F +L F +GDV+T I+ +
Sbjct: 8 WPSGTECIAKYNFHGTAEQDLPFCKGDVLT-------------------------IVAVT 42
Query: 211 DDMNWYRAEL-DGKEGLIPSNYIEMK 235
D NWY+A+ G+EG+IP+NY++ +
Sbjct: 43 KDPNWYKAKNKVGREGIIPANYVQKR 68
Score = 37.2 bits (87), Expect = 5e-04
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 330 VPEECLVQALYDFTPQEPGELEFRR 354
P A Y+F +L F +
Sbjct: 8 WPSGTECIAKYNFHGTAEQDLPFCK 32
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 88.5 bits (220), Expect = 2e-22
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALY F PQE +LE R GD+IT+ + S++ WW G+I R G FPA ++
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59
Score = 67.7 bits (166), Expect = 8e-15
Identities = 9/54 (16%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+A + F ++L R ++ +L ++ +W++ ++ + G P+N+++
Sbjct: 9 TYVALYKFVPQENEDLEMRPGDIITLLEDSNE-DWWKGKIQDRIGFFPANFVQR 61
Score = 38.0 bits (89), Expect = 3e-04
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
ALY F PQE +LE R I
Sbjct: 10 YVALYKFVPQENEDLEMRPGDII 32
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 89.0 bits (221), Expect = 3e-22
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA 196
+S S +++L + V + +ALYDF E EL F+ G++I V D SD +WW GE
Sbjct: 2 SSGSSGSEIQLNNKVARKV--RALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHR 59
Query: 197 RKGLFPATYI 206
GLFP+ ++
Sbjct: 60 GIGLFPSNFV 69
Score = 69.4 bits (170), Expect = 4e-15
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A +DF A ++EL+F+ +++ +L+ D NW++ E GL PSN++
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDA-NWWKGENHRGIGLFPSNFVTT 71
Score = 38.6 bits (90), Expect = 2e-04
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 316 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
+S S +++L + V + +ALYDF E EL F+
Sbjct: 2 SSGSSGSEIQLNNKVARKV--RALYDFEAVEDNELTFKHG 39
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 88.5 bits (220), Expect = 3e-22
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALYDF P+ GEL F+ GD+IT+T++ D++W+ G + G FP Y+
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59
Score = 68.8 bits (169), Expect = 3e-15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A +DF E EL F++ ++ + N D+ NWY L G G P NY+E+
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDE-NWYEGMLHGHSGFFPINYVEI 61
Score = 36.9 bits (86), Expect = 7e-04
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ALYDF P+ GEL F+
Sbjct: 10 CRALYDFEPENEGELGFKEG 29
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 88.6 bits (220), Expect = 3e-22
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++ +
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 63
Query: 216 YRAELDGKEGLIPS 229
R L G + P
Sbjct: 64 SRENLGGPPPVPPY 77
Score = 70.5 bits (173), Expect = 9e-16
Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVK 55
Score = 37.4 bits (87), Expect = 7e-04
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 335 LVQALYDFTPQEPGELEFRR 354
LV ALYD+ + P E+ ++
Sbjct: 4 LVLALYDYQEKSPREVTMKK 23
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 88.0 bits (219), Expect = 3e-22
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL ++ + PG+L+F +GDVI + + D++W+ GEI G+FPA+ +
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
Score = 68.4 bits (168), Expect = 5e-15
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A A ++ +L F K V+ + D+ NWY+ E++G G+ P++ +E+
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDE-NWYQGEINGVSGIFPASSVEV 61
Score = 36.8 bits (86), Expect = 7e-04
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+AL ++ + PG+L+F +
Sbjct: 10 AKALCNYRGKNPGDLKFNKG 29
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 87.6 bits (218), Expect = 3e-22
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ +ALY F P+ P EL F GD+I +TD SD +WW G R GL P+ Y+
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
Score = 69.1 bits (170), Expect = 2e-15
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A + F DEL F + ++ I +M D NW++ G+ GLIPSNY+
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDT-NWWKGTSKGRTGLIPSNYVA 56
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 334 CLVQALYDFTPQEPGELEFRRDLKI 358
+ +ALY F P+ P EL F I
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDII 28
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 88.1 bits (219), Expect = 4e-22
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+A +DF Q EL ++GD++ + + DQ+W+ GE R G+FP TYI
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
Score = 69.6 bits (171), Expect = 2e-15
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A AK DF A EL +K ++ I D NWY E G+ G+ P YIE+
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQ-NWYEGEHHGRVGIFPRTYIEL 61
Score = 36.8 bits (86), Expect = 6e-04
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+A +DF Q EL ++
Sbjct: 10 ARAKFDFKAQTLKELPLQKG 29
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 87.3 bits (217), Expect = 6e-22
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALY F P+ P EL F GD+I +TD SD +WW G R GL P+ Y+
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
Score = 70.3 bits (173), Expect = 8e-16
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A + F DEL F + ++ I +M D NW++ G+ GLIPSNY+
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDT-NWWKGTSKGRTGLIPSNYVAE 61
Score = 37.2 bits (87), Expect = 5e-04
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
+ALY F P+ P EL F I
Sbjct: 10 FRALYTFEPRTPDELYFEEGDII 32
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 95.0 bits (237), Expect = 6e-22
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 47 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
+IP + WY+G I RA+ LL H G FL+R S+ ++ LSV +H
Sbjct: 2 MIPEVQKPLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQ-GKQEYVLSVLWDGLPRH 58
Query: 107 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTAS 138
F + + + L F S+ L+++ +
Sbjct: 59 FII-QSLDNLYRLEGEGFPSIPLLIDHLLSTQ 89
Score = 95.0 bits (237), Expect = 6e-22
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
+IP + WY+G I RA+ LL H G FL+R S+ ++ LSV +H
Sbjct: 2 MIPEVQKPLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQ-GKQEYVLSVLWDGLPRH 58
Query: 286 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTAS 317
F + + + L F S+ L+++ +
Sbjct: 59 FII-QSLDNLYRLEGEGFPSIPLLIDHLLSTQ 89
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 86.9 bits (216), Expect = 6e-22
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ LV LYD+ + P EL ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58
Score = 70.7 bits (174), Expect = 5e-16
Identities = 13/55 (23%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+ +D+ + EL+ +K +L +LN + +W++ E++G++G +P+ Y++ +
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNK-DWWKIEVNGRQGFVPAAYLKKLD 62
Score = 38.0 bits (89), Expect = 2e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
+ LV LYD+ + P EL ++ +
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILT 32
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 96.1 bits (239), Expect = 7e-22
Identities = 72/301 (23%), Positives = 119/301 (39%), Gaps = 108/301 (35%)
Query: 55 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
MK+ W++ IT +AE LL + +G+FL R S+S+PGD +LSV+ + V H K+
Sbjct: 1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTG 60
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEF 173
KF +L ELV+Y+ + G+L+
Sbjct: 61 DYYDLYGGEKFATLAELVQYYM------------------------------EHHGQLKE 90
Query: 174 RRGDVIT------VTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLI 227
+ GDVI D + + W+HG + +
Sbjct: 91 KNGDVIELKYPLNCADPTSERWFHGHLSGK------------------------------ 120
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSD----- 281
+AE+LL+ K + G+FL+R S+S PGDF LSV+ D
Sbjct: 121 --------------------EAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGES 160
Query: 282 -----GVQHFKVLRDSSGKFFLWVV----KFNSLNELVEYHRTASV--SRSQDVKLRDMV 330
V H + R K + V +F+SL +LVE+++ + + ++L+ +
Sbjct: 161 NDGKSKVTHVMI-RCQELK---YDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPL 216
Query: 331 P 331
Sbjct: 217 N 217
Score = 56.4 bits (136), Expect = 6e-09
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 21/121 (17%)
Query: 49 PSNYIEMKNHDWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSD----- 102
P N + + W++G ++ +AE+LL+ K + G+FL+R S+S PGDF LSV+ D
Sbjct: 101 PLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGES 160
Query: 103 -----GVQHFKVLRDSSGKFFLWVV----KFNSLNELVEYHRTASV--SRSQDVKLRDMV 151
V H + R K + V +F+SL +LVE+++ + + ++L+ +
Sbjct: 161 NDGKSKVTHVMI-RCQELK---YDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPL 216
Query: 152 P 152
Sbjct: 217 N 217
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 86.9 bits (216), Expect = 7e-22
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
A +D+ + EL F++G + + R+ + WW G GL P YI
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
Score = 73.8 bits (182), Expect = 4e-17
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
AIAK D+ + ELSF+K L + + + +W+ +G +GL+P YI
Sbjct: 8 FAIAKFDYVGRSARELSFKKGASLLLYHRASE-DWWEGRHNGIDGLVPHQYIV 59
Score = 36.0 bits (84), Expect = 0.001
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
A +D+ + EL F++
Sbjct: 9 AIAKFDYVGRSARELSFKKG 28
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 87.3 bits (217), Expect = 7e-22
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ LYDF P+ GEL F+ GD+IT+T++ D++W+ G I G FP Y+
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYV 55
Score = 68.4 bits (168), Expect = 4e-15
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+DF + EL F++ ++ + N D+ NWY + G+ G P NY+E+
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDE-NWYEGMIHGESGFFPINYVEV 57
Score = 36.4 bits (85), Expect = 9e-04
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ LYDF P+ GEL F+
Sbjct: 6 CRGLYDFEPENQGELGFKEG 25
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 86.9 bits (216), Expect = 8e-22
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ +DF Q P EL ++GD++ + D++W GE R G+FPA Y+
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53
Score = 72.2 bits (178), Expect = 1e-16
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWY 61
A K DF A + EL+ +K ++ I D NW E G+ G+ P+NY+E+ + +
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDK-NWLEGEHHGRLGIFPANYVEVLPLEHH 61
Score = 36.8 bits (86), Expect = 7e-04
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ +DF Q P EL ++
Sbjct: 4 ARLKFDFQAQSPKELTLQKG 23
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 86.9 bits (216), Expect = 8e-22
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V+ALYDF E EL F+ G++ITV D SD +WW GE GLFP+ ++
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
Score = 69.2 bits (170), Expect = 2e-15
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A +DF A ++EL+F+ +++ +L+ D NW++ E GL PSN++
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDA-NWWQGENHRGTGLFPSNFVTT 59
Score = 37.2 bits (87), Expect = 5e-04
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
V+ALYDF E EL F+
Sbjct: 8 VRALYDFEAVEDNELTFKHG 27
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 87.5 bits (217), Expect = 9e-22
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--R 197
S S V E A Y F EL FR+G+ I + + +++W+ G I R
Sbjct: 3 SGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGR 62
Query: 198 KGLFPATYI 206
+G+FPA+Y+
Sbjct: 63 QGIFPASYV 71
Score = 67.1 bits (164), Expect = 2e-14
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM 55
EA+A++ F E ELSFRK + + ++ ++ NWY + G++G+ P++Y+++
Sbjct: 19 EAVAQYTFKGDLEVELSFRKGEHICLIRKVNE-NWYEGRITGTGRQGIFPASYVQV 73
Score = 39.3 bits (92), Expect = 1e-04
Identities = 12/40 (30%), Positives = 13/40 (32%)
Query: 319 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKI 358
S S V E A Y F EL FR+ I
Sbjct: 3 SGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHI 42
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 86.4 bits (215), Expect = 1e-21
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
+ALYDF E EL FR G+V+ V D S+ WW G + + GLFPA Y
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANY 52
Score = 66.4 bits (163), Expect = 2e-14
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A A +DF A EDEL FR +V+++L+ + +W+ L K GL P+NY+
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNP-SWWTGRLHNKLGLFPANYVA 54
Score = 36.7 bits (86), Expect = 6e-04
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ALYDF E EL FR
Sbjct: 4 ARALYDFEALEEDELGFRSG 23
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 87.1 bits (216), Expect = 1e-21
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ LV ALYD+ + P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 15 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 69
Score = 76.3 bits (188), Expect = 9e-18
Identities = 13/65 (20%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYY 62
+A +D+ + E++ +K +L +LN + +W++ E++ ++G +P+ Y++ W +
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVKKLAAAWSH 78
Query: 63 GRITR 67
+ +
Sbjct: 79 PQFEK 83
Score = 38.5 bits (90), Expect = 2e-04
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
+ LV ALYD+ + P E+ ++ +
Sbjct: 15 TGKELVLALYDYQEKSPREVTMKKGDILT 43
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 87.5 bits (217), Expect = 1e-21
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
C V A+YD+ EL F +G +I V ++ D WW GEI GLFP+ Y+ D
Sbjct: 32 HPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD 91
Query: 212 D 212
Sbjct: 92 S 92
Score = 69.8 bits (171), Expect = 3e-15
Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
IA +D+ A EDELSF K Q++ ++N +D +W++ E++G GL PSNY++M
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDP-DWWQGEINGVTGLFPSNYVKM 88
Score = 37.0 bits (86), Expect = 0.001
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKI 358
C V A+YD+ EL F + I
Sbjct: 32 HPVCQVIAMYDYAANNEDELSFSKGQLI 59
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 87.1 bits (216), Expect = 1e-21
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
+ + V ALY F Q+PG+L F+ GD ITV ++D H WW G++ + G+FPA Y+
Sbjct: 14 LNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
Score = 67.8 bits (166), Expect = 1e-14
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
+E A + F +L+F+ + +++ D +W+ +L G+ G+ P+NY+ M
Sbjct: 18 IEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73
Score = 40.8 bits (96), Expect = 4e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 330 VPEECLVQALYDFTPQEPGELEFRRDLKI 358
+ + V ALY F Q+PG+L F+ +I
Sbjct: 14 LNQPIEVTALYSFEGQQPGDLNFQAGDRI 42
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 86.1 bits (214), Expect = 1e-21
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
P +V+A ++F EL F +GDVI VT + WW G R G FP+ Y+
Sbjct: 2 PLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
Score = 68.4 bits (168), Expect = 4e-15
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
AK +F T EDELSF K V+ + +E+ W+ +G+ G PSNY+
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTHNGRTGWFPSNYVR 57
Score = 38.0 bits (89), Expect = 2e-04
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
P +V+A ++F EL F +
Sbjct: 2 PLGSVVRAKFNFQQTNEDELSFSKG 26
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 86.2 bits (214), Expect = 2e-21
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
P A ++F E+ FR+G+ IT+ + D++W+ G I +R+G+FP TY+
Sbjct: 4 PFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60
Score = 68.4 bits (168), Expect = 5e-15
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
EAIAK +FN + E+SFRK + + +L D+ NWY + G ++G+ P Y+++
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 62
Score = 37.6 bits (88), Expect = 3e-04
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKI 358
P A ++F E+ FR+ +I
Sbjct: 4 PFTGEAIAKFNFNGDTQVEMSFRKGERI 31
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 86.2 bits (214), Expect = 2e-21
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
+AL DF + EL FR+ D+IT+ + D+H W GE+ +G FPA ++ +++
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER 65
Score = 67.7 bits (166), Expect = 9e-15
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A A DF +DEL FRK+ ++ I++ +D+ + + EL+G G P+ ++E+
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDE-HCWVGELNGLRGWFPAKFVEV 61
Score = 35.8 bits (83), Expect = 0.002
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+AL DF + EL FR++
Sbjct: 10 AKALLDFERHDDDELGFRKN 29
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 85.4 bits (212), Expect = 3e-21
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ +V+A ++F EL F +GDVI VT + WW G R G FP+ Y+
Sbjct: 4 NSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 69.2 bits (170), Expect = 2e-15
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
AK +F T EDELSF K V+ + +E+ W+ +G+ G PSNY+
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTHNGRTGWFPSNYVR 59
Score = 37.2 bits (87), Expect = 5e-04
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+ +V+A ++F EL F +
Sbjct: 4 NSQLVVRAKFNFQQTNEDELSFSKG 28
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 85.4 bits (212), Expect = 3e-21
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
E V+A+YDF E EL F+ G++ITV D SD +WW GE GLFP+ ++
Sbjct: 15 HEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 68.9 bits (169), Expect = 4e-15
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A +DF A ++EL+F+ +++ +L+ D NW++ E GL PSN++
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDP-NWWKGETHQGIGLFPSNFVTA 71
Score = 37.3 bits (87), Expect = 6e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
E V+A+YDF E EL F+
Sbjct: 15 HEARKVRAIYDFEAAEDNELTFKAG 39
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 85.5 bits (212), Expect = 4e-21
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK 56
+ I K + EL+FRK V+ IL ++ +WYR + G+EGL+ + + +
Sbjct: 18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER 75
Score = 76.7 bits (189), Expect = 8e-18
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 27/86 (31%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+ T +PGEL FR+GDV+T IL +
Sbjct: 15 APGTQCITKCEHTRPKPGELAFRKGDVVT-------------------------ILEACE 49
Query: 212 DMNWYRAE--LDGKEGLIPSNYIEMK 235
+ +WYR + G+EGL+ + + +
Sbjct: 50 NKSWYRVKHHTSGQEGLLAAGALRER 75
Score = 34.7 bits (80), Expect = 0.005
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 331 PEECLVQALYDFTPQEPGELEFRR 354
+ T +PGEL FR+
Sbjct: 15 APGTQCITKCEHTRPKPGELAFRK 38
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 84.5 bits (210), Expect = 6e-21
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
ALY F +E G+L FR+GDVIT+ +SD WW G + R+G+FPA Y+
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57
Score = 68.7 bits (169), Expect = 3e-15
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
+A+A + F +L FRK V+ IL D +W+ ++G+EG+ P+NY+E+
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
Score = 37.5 bits (88), Expect = 4e-04
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 336 VQALYDFTPQEPGELEFRRDLKIK 359
ALY F +E G+L FR+ I
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVIT 29
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 84.5 bits (210), Expect = 6e-21
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ L+ F P+ EL+ G+++ V + + +W +KGL P Y+
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYL 59
Score = 64.9 bits (159), Expect = 7e-14
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
F ++EL ++ +L +D NW +G++GL+P NY+E
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGND-NWATVMFNGQKGLVPCNYLE 60
Score = 37.2 bits (87), Expect = 6e-04
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ L+ F P+ EL+
Sbjct: 10 HRVLFGFVPETKEELQVMPG 29
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 84.2 bits (209), Expect = 8e-21
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALY + Q+ EL F D+I + WW G + ++GLFP Y+
Sbjct: 3 LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
Score = 67.6 bits (166), Expect = 7e-15
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ A + ++A DELSF + ++ I+ + W+ L GK+GL P+NY+
Sbjct: 6 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPS-GWWTGRLRGKQGLFPNNYVT 58
Score = 36.0 bits (84), Expect = 0.001
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+ALY + Q+ EL F +
Sbjct: 3 LGSPQCKALYAYDAQDTDELSFNAN 27
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 84.3 bits (209), Expect = 1e-20
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V A+YD+T + EL F+ G +I V ++D W+ G + GLFP Y+
Sbjct: 15 SYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
Score = 67.8 bits (166), Expect = 9e-15
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+A +D+ EDELSF++ ++ ++ DD WY ++G GL P NY+E
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDD-GWYEGVMNGVTGLFPGNYVES 71
Score = 36.9 bits (86), Expect = 9e-04
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
V A+YD+T + EL F+
Sbjct: 15 SYLEKVVAIYDYTKDKEDELSFQEG 39
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 83.9 bits (208), Expect = 1e-20
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALY F ++ EL +GD++ + ++ ++ WW G + +KG FPA Y+
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
Score = 67.0 bits (164), Expect = 2e-14
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A + F A +DEL+ K ++ I +++ W+ L+GK+G P+ Y+E
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVIIHEKKEE-GWWFGSLNGKKGHFPAAYVE 60
Score = 35.4 bits (82), Expect = 0.003
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ALY F ++ EL +
Sbjct: 10 CKALYSFQARQDDELNLEKG 29
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 83.5 bits (207), Expect = 2e-20
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ +V+A ++F EL +GD+I VT + WW G + R G FP+ Y+
Sbjct: 8 SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
Score = 68.5 bits (168), Expect = 6e-15
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A+ +F T EDELS K ++ + +E+ W+ L+G+ G PSNY+
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEG-GWWEGTLNGRTGWFPSNYVRE 64
Score = 36.1 bits (84), Expect = 0.002
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+ +V+A ++F EL +
Sbjct: 8 SHQLIVKARFNFKQTNEDELSVCKG 32
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 83.4 bits (207), Expect = 2e-20
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
+ ++ + L+++ PQ ELE + GD+I + + ++ WW G + + GLFP+ ++ +
Sbjct: 3 LGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62
Query: 210 ED 211
E
Sbjct: 63 EV 64
Score = 64.6 bits (158), Expect = 1e-13
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
++ EDEL + ++ I ++ W+ L+ K GL PSN+++
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEE-GWWSGTLNNKLGLFPSNFVKE 61
Score = 37.2 bits (87), Expect = 4e-04
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 329 MVPEECLVQALYDFTPQEPGELEFRRD 355
+ ++ + L+++ PQ ELE +
Sbjct: 3 LGSKKRQCKVLFEYIPQNEDELELKVG 29
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 83.0 bits (206), Expect = 2e-20
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V+ALYD+ Q EL F+ GD I V + WW GE+ ++G PA Y+
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
Score = 69.1 bits (170), Expect = 2e-15
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
++ A +D++A DEL+F++ + + + W+ EL+GK G +P+NY++
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPA-GWWEGELNGKRGWVPANYVQ 56
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
V+ALYD+ Q EL F+
Sbjct: 6 VKALYDYDAQTGDELTFKEG 25
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 83.0 bits (206), Expect = 2e-20
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 25/89 (28%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
V+AL+DF + +L F++GD++ + D+ ++ WW+ E
Sbjct: 2 SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED------------------ 43
Query: 213 MNWYRAELDGKEGLIPSNYIEMKNHDWYY 241
+GK G+IP Y+E +H ++
Sbjct: 44 -------SEGKRGMIPVPYVEKYHHHHHH 65
Score = 71.5 bits (176), Expect = 3e-16
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHDWY 61
A DFN E++L F+K +L+I + ++ W+ AE +GK G+IP Y+E +H +
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEGKRGMIPVPYVEKYHHHHH 64
Query: 62 Y 62
+
Sbjct: 65 H 65
Score = 37.2 bits (87), Expect = 5e-04
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 332 EECLVQALYDFTPQEPGELEFRRD 355
V+AL+DF + +L F++
Sbjct: 2 SAEYVRALFDFNGNDEEDLPFKKG 25
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 83.1 bits (206), Expect = 2e-20
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
A ++F E+ FR+G+ IT+ + D++W+ G I +R+G+FP TY+
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
Score = 66.9 bits (164), Expect = 1e-14
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
EAIAK +FN + E+SFRK + + +L D+ NWY + G ++G+ P Y+++
Sbjct: 9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 63
Score = 35.7 bits (83), Expect = 0.002
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
A ++F E+ FR+ +I
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERI 32
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 83.2 bits (206), Expect = 3e-20
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATY 205
+ V+ +YD EL F G+VI VT DQ WW G I RKG+FP ++
Sbjct: 8 NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSF 64
Score = 62.0 bits (151), Expect = 1e-12
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG---KEGLIPSNYIEM 55
+D A +DEL+F + +V+ + ED W+ ++G ++G+ P +++ +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQ-EWWIGHIEGQPERKGVFPVSFVHI 67
Score = 35.8 bits (83), Expect = 0.002
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+ V+ +YD EL F
Sbjct: 8 NKVRRVKTIYDCQADNDDELTFIEG 32
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 82.8 bits (205), Expect = 3e-20
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
E QAL +T ++ L F + D+ITV ++ ++WW GE+ +G FP +Y+
Sbjct: 8 VENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYV 61
Score = 65.0 bits (159), Expect = 9e-14
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
++A A + A ++ L+F K ++ +L ++ NW+ E+ G G P +Y+++
Sbjct: 11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQQE--NWWFGEVHGGRGWFPKSYVKI 63
Score = 37.3 bits (87), Expect = 5e-04
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
E QAL +T ++ L F +
Sbjct: 8 VENLKAQALCSWTAKKDNHLNFSKH 32
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 82.8 bits (205), Expect = 3e-20
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGARKGLFPATYI 206
+AL D+ + L F+R D+IT+T + ++ W+ G++ ++G FP ++
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
Score = 70.9 bits (174), Expect = 8e-16
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A A D+N + L F+++ ++ I + + W+ +L+GKEG P +++E
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64
Score = 36.6 bits (85), Expect = 0.001
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 336 VQALYDFTPQEPGELEFRR 354
+AL D+ + L F+R
Sbjct: 13 ARALKDYNVSDTSLLPFKR 31
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 82.3 bits (204), Expect = 4e-20
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
+ L+++ PQ ELE + GD+I + + ++ WW G + + GLFP+ ++ +E +
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE 59
Score = 64.2 bits (157), Expect = 1e-13
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
++ EDEL + ++ I ++ W+ L+ K GL PSN+++
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEE-GWWSGTLNNKLGLFPSNFVK 54
Score = 36.1 bits (84), Expect = 0.001
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 334 CLVQALYDFTPQEPGELEFRRD 355
+ L+++ PQ ELE +
Sbjct: 2 RQCKVLFEYIPQNEDELELKVG 23
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 82.4 bits (204), Expect = 5e-20
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 25/102 (24%)
Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA 196
+S S +D + PEE +V ALYD+ +P EL RR + + D S+ HWW +
Sbjct: 2 SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD-- 59
Query: 197 RKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 238
+G EG +PS+Y+ K+ +
Sbjct: 60 -----------------------RNGHEGYVPSSYLVEKSPN 78
Score = 67.4 bits (165), Expect = 2e-14
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHD 59
IA +D+ EL+ R+++ +L+ + +W+R + +G EG +PS+Y+ K+ +
Sbjct: 22 VIALYDYQTNDPQELALRRNEEYCLLDSSEI-HWWRVQDRNGHEGYVPSSYLVEKSPN 78
Score = 41.6 bits (98), Expect = 2e-05
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 316 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
+S S +D + PEE +V ALYD+ +P EL RR+
Sbjct: 2 SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRN 41
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 81.9 bits (203), Expect = 5e-20
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
Q + + PQ ELE + GD+I V ++ WW G + + G+FP+ +I
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59
Score = 65.3 bits (160), Expect = 6e-14
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ +DEL + +++++ ++ W+ L+GK G+ PSN+I+
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEE-GWWEGVLNGKTGMFPSNFIKE 61
Score = 35.7 bits (83), Expect = 0.002
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
Q + + PQ ELE +
Sbjct: 10 CQVAFSYLPQNDDELELKVG 29
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 81.9 bits (203), Expect = 6e-20
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 25/85 (29%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
E V ALYD+ P +L+ R+GD + + S+ WW
Sbjct: 6 SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK---------------- 49
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
+G+EG IPSNY+
Sbjct: 50 ---------NGQEGYIPSNYVTEAE 65
Score = 68.4 bits (168), Expect = 4e-15
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMKN 57
+A +D+ ++L RK IL + W+RA +G+EG IPSNY+
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNL-PWWRARDKNGQEGYIPSNYVTEAE 65
Score = 39.9 bits (94), Expect = 5e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
E V ALYD+ P +L+ R+
Sbjct: 6 SELKKVVALYDYMPMNANDLQLRKG 30
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 85.8 bits (212), Expect = 6e-20
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 46/127 (36%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI---------- 206
+A+ D+ E+ GDV+ V ++S+ WW ++ A++G PA+++
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETE 73
Query: 207 -----------------------------------LNMEDDMNWYRAELDGKEGLIPSNY 231
++ D W+ D G PS Y
Sbjct: 74 DPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLD-GWWVIRKDDVTGYFPSMY 132
Query: 232 IEMKNHD 238
++ D
Sbjct: 133 LQKSGQD 139
Score = 74.3 bits (182), Expect = 7e-16
Identities = 13/74 (17%), Positives = 25/74 (33%)
Query: 139 VSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK 198
+ + + + A+ +T E E+ G+ + V + WW
Sbjct: 66 LDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT 125
Query: 199 GLFPATYILNMEDD 212
G FP+ Y+ D
Sbjct: 126 GYFPSMYLQKSGQD 139
Score = 63.5 bits (154), Expect = 5e-12
Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
A D+ T+ E++ V++++ + W+ ++ K G IP++++E +
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSES-GWWFCQMKAKRGWIPASFLEPLDSPD 70
Score = 59.6 bits (144), Expect = 8e-11
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
+A + A DE+S + + +++++ D W+ D G PS Y++ D
Sbjct: 83 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLD-GWWVIRKDDVTGYFPSMYLQKSGQD 139
Score = 31.1 bits (70), Expect = 0.36
Identities = 4/42 (9%), Positives = 13/42 (30%)
Query: 318 VSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
+ + + + A+ +T E E+ ++
Sbjct: 66 LDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVE 107
Score = 31.1 bits (70), Expect = 0.43
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 336 VQALYDFTPQEPGELEFRR 354
+A+ D+ E+
Sbjct: 14 YRAIADYEKTSGSEMALST 32
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 81.5 bits (202), Expect = 7e-20
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
ALY ++ EPG+L F G+ I VT + WW G IG R G+FP+ Y+ +
Sbjct: 6 SGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDG-EWWTGSIGDRSGIFPSNYVKPKDS 64
Query: 212 D 212
Sbjct: 65 G 65
Score = 69.2 bits (170), Expect = 2e-15
Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
E IA + +++ +L+F + + + + + + W+ + + G+ PSNY++ K+
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGEEILVTQKDGE--WWTGSIGDRSGIFPSNYVKPKDSG 65
Score = 38.4 bits (90), Expect = 2e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
ALY ++ EPG+L F +I
Sbjct: 6 SGGEEYIALYPYSSVEPGDLTFTEGEEIL 34
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 81.5 bits (202), Expect = 8e-20
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
A+ D+ + +L F RG+ I + ++ WW GE G PA ++
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
Score = 72.7 bits (179), Expect = 1e-16
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH 58
E +A D+ AT E +LSF + + + IL +W+ E G G IP+N++ +
Sbjct: 9 EFVAIADYAATDETQLSFLRGEKILILRQTTA-DWWWGERAGCCGYIPANHVGKHSG 64
Score = 35.7 bits (83), Expect = 0.001
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
A+ D+ + +L F R KI
Sbjct: 10 FVAIADYAATDETQLSFLRGEKI 32
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 81.0 bits (201), Expect = 9e-20
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 25/77 (32%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
V+AL+DF + +L F++GD++ + D+ ++ WW+ E
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED---------------------- 41
Query: 217 RAELDGKEGLIPSNYIE 233
+GK G+IP Y+E
Sbjct: 42 ---SEGKRGMIPVPYVE 55
Score = 69.5 bits (171), Expect = 1e-15
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE 54
A DFN E++L F+K +L+I + ++ W+ AE +GK G+IP Y+E
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEGKRGMIPVPYVE 55
Score = 36.7 bits (86), Expect = 6e-04
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 336 VQALYDFTPQEPGELEFRR 354
V+AL+DF + +L F++
Sbjct: 4 VRALFDFNGNDEEDLPFKK 22
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 81.6 bits (202), Expect = 1e-19
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALYD+ E+ F D+IT + D WW G R GLFPA Y+
Sbjct: 15 DLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69
Score = 68.2 bits (167), Expect = 7e-15
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ A+A +D+ A +DE+SF ++ + M DD W+R G+ GL P+NY+E+
Sbjct: 18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVEL 71
Score = 34.3 bits (79), Expect = 0.007
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
ALYD+ E+ F D
Sbjct: 15 DLGITAVALYDYQAAGDDEISFDPD 39
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 81.1 bits (201), Expect = 1e-19
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+A +DF A+ ++ LS K + L++L + W A+ +G +PS YI N
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
Score = 74.2 bits (183), Expect = 4e-17
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 25/87 (28%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
M + L ALYDF L +G+ + V L
Sbjct: 1 MENDPNLFVALYDFVASGDNTLSITKGEKLRV-------------------------LGY 35
Query: 210 EDDMNWYRAELDGKEGLIPSNYIEMKN 236
+ W A+ +G +PS YI N
Sbjct: 36 NHNGEWCEAQTKNGQGWVPSAYITPVN 62
Score = 34.5 bits (80), Expect = 0.004
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 329 MVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
M + L ALYDF L + K++
Sbjct: 1 MENDPNLFVALYDFVASGDNTLSITKGEKLR 31
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 81.1 bits (201), Expect = 1e-19
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ALYD+T Q P EL+ GD++ V + WW E ++G P +Y+
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60
Score = 63.4 bits (155), Expect = 3e-13
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
E A +D+ A DEL +L+++ +D W+ E +G+ G +P +Y+E
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEGED-GWWTVERNGQRGFVPGSYLE 61
Score = 34.5 bits (80), Expect = 0.004
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ALYD+T Q P EL+
Sbjct: 11 YRALYDYTAQNPDELDLSAG 30
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 81.4 bits (201), Expect = 2e-19
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKG 199
S S + +++ + EL +G + V ++ WW G + G
Sbjct: 3 SGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVG 62
Query: 200 LFPATY 205
FP+ Y
Sbjct: 63 WFPSNY 68
Score = 69.0 bits (169), Expect = 5e-15
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
M A K ++ A EDELS K + ++ D W+R +G+ G PSNY+
Sbjct: 18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSD-GWWRGSYNGQVGWFPSNYVTE 71
Score = 35.9 bits (83), Expect = 0.002
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 319 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKI 358
S S + +++ + EL + K+
Sbjct: 3 SGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKV 42
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 81.3 bits (201), Expect = 2e-19
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATY 205
V AL + L F RGD+I + + W G G R GLFPA
Sbjct: 6 SGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADI 61
Score = 64.8 bits (158), Expect = 1e-13
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIE 54
IA + LSF + ++K+L + + W G+ GL P++ ++
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63
Score = 36.6 bits (85), Expect = 0.001
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
V AL + L F R IK
Sbjct: 6 SGSGYVIALRSYITDNCSLLSFHRGDLIK 34
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 80.8 bits (200), Expect = 2e-19
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQH---WWHGEIGARKGLFPATYI 206
L +ALYD + P EL FR+GD++TV ++ Q WW + R+G+ P +
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRL 58
Score = 67.3 bits (165), Expect = 1e-14
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMED--DMNWYRAELDGKEGLIPSNYIEM 55
+ A A +D A + DELSFRK ++ +L + W+ L G++G++P N +++
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60
Score = 38.1 bits (89), Expect = 3e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 334 CLVQALYDFTPQEPGELEFRR 354
L +ALYD + P EL FR+
Sbjct: 4 VLAKALYDNVAESPDELSFRK 24
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 80.8 bits (200), Expect = 2e-19
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPATY 205
C V+ALYD+ Q EL F G +I + ++ D +W GE R G+FP+
Sbjct: 6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVL 62
Score = 65.8 bits (161), Expect = 4e-14
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIEM 55
A +D+ +DELSF + +++ILN E DD ++ E +G+ G+ PS +E
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 65
Score = 36.9 bits (86), Expect = 7e-04
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
C V+ALYD+ Q EL F
Sbjct: 6 SGVCFVKALYDYEGQTDDELSFPEG 30
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 80.9 bits (200), Expect = 2e-19
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 25/85 (29%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
PEE LV ALYD+ +P EL R + + D S+ HWW +
Sbjct: 18 PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQ------------------ 59
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
+ +G EG PS+Y+ K+
Sbjct: 60 -------DKNGHEGYAPSSYLVEKS 77
Score = 68.6 bits (168), Expect = 6e-15
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN 57
IA +D+ EL+ R + +L+ + +W+R + +G EG PS+Y+ K+
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLLDSSEI-HWWRVQDKNGHEGYAPSSYLVEKS 77
Score = 39.7 bits (93), Expect = 9e-05
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
PEE LV ALYD+ +P EL R D
Sbjct: 18 PEETLVIALYDYQTNDPQELALRCD 42
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 81.0 bits (200), Expect = 2e-19
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
Q + + PQ ELE + GD+I V ++ WW G + + G+FP+ +I +
Sbjct: 16 RRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 75
Query: 212 D 212
+
Sbjct: 76 E 76
Score = 64.0 bits (156), Expect = 3e-13
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ +DEL + +++++ ++ W+ L+GK G+ PSN+I+
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEE-GWWEGVLNGKTGMFPSNFIKE 72
Score = 35.9 bits (83), Expect = 0.002
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
Q + + PQ ELE +
Sbjct: 16 RRRRRCQVAFSYLPQNDDELELKVG 40
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 80.4 bits (199), Expect = 2e-19
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPATYI 206
L +ALYD P EL F RGD++T+ ++ + WW + R+GL PA +
Sbjct: 9 LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62
Score = 66.2 bits (162), Expect = 3e-14
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIEM 55
A A +D DEL+F + +L IL + W++ L G++GL P+N +++
Sbjct: 10 ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
Score = 37.3 bits (87), Expect = 6e-04
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 335 LVQALYDFTPQEPGELEFRRD 355
L +ALYD P EL F R
Sbjct: 9 LARALYDNCPDCSDELAFSRG 29
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 79.6 bits (197), Expect = 4e-19
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
ALYD+ E+ F D+IT + D WW G R GLFPA Y+
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
Score = 68.8 bits (169), Expect = 3e-15
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
+ AIA +D+ A +DE+SF ++ + M DD W+R G+ GL P+NY+E++
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVELR 64
Score = 33.7 bits (78), Expect = 0.008
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
ALYD+ E+ F D
Sbjct: 12 AIALYDYQAAGDDEISFDPD 31
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 79.7 bits (197), Expect = 4e-19
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
A Y+F ++ EL R GDV+ + R DQ WW GE R G FP+TY+
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
Score = 67.7 bits (166), Expect = 8e-15
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIE 54
A+A+++F A ELS R+ V++I + D W++ E +G+ G PS Y+E
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
Score = 34.6 bits (80), Expect = 0.005
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 336 VQALYDFTPQEPGELEFRRDLKIK 359
A Y+F ++ EL R ++
Sbjct: 10 AVARYNFAARDMRELSLREGDVVR 33
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 79.3 bits (196), Expect = 5e-19
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
V V ALYD+T EL RGD+I V + ++ WW+G IG
Sbjct: 3 VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG--------------- 47
Query: 211 DDMNWYRAELDGKEGLIPSNYIEMKNH 237
G+EG P+N++ +
Sbjct: 48 ----------KGQEGYFPANHVASETL 64
Score = 66.6 bits (163), Expect = 2e-14
Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMKNH 58
+A +D+ A DEL+ + ++++ +++ +W+ + G+EG P+N++ +
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNE-DWWYGSIGKGQEGYFPANHVASETL 64
Score = 37.7 bits (88), Expect = 4e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 330 VPEECLVQALYDFTPQEPGELEFRRDLKIK 359
V V ALYD+T EL R I+
Sbjct: 3 VDTAPTVVALYDYTANRSDELTIHRGDIIR 32
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 79.7 bits (197), Expect = 5e-19
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 24/85 (28%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
L ALYD+ +L F +G+ + + S+ WW
Sbjct: 13 TGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEA------------------- 53
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
R+ G+ G IPSNY+ +
Sbjct: 54 -----RSLTTGETGYIPSNYVAPVD 73
Score = 66.2 bits (162), Expect = 3e-14
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN 57
+A +D+ A ED+LSF K + +ILN + +W+ A G+ G IPSNY+ +
Sbjct: 19 VALYDYEAITEDDLSFHKGEKFQILNSSEG-DWWEARSLTTGETGYIPSNYVAPVD 73
Score = 38.4 bits (90), Expect = 2e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
L ALYD+ +L F + K +
Sbjct: 13 TGVTLFVALYDYEAITEDDLSFHKGEKFQ 41
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 79.3 bits (196), Expect = 5e-19
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYIL 207
M ALYDF P+ EL GD++ ++ + Q W E G++ GL P ++
Sbjct: 1 MAIVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60
Query: 208 NMEDDM 213
++ ++
Sbjct: 61 YIQPEL 66
Score = 62.7 bits (153), Expect = 5e-13
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE-----M 55
A+A +DF ++EL + ++ I W AE K GL+P ++ +
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQ-GWLVAENESGSKTGLVPEEFVSYIQPEL 66
Query: 56 KNHDWYY 62
++H ++
Sbjct: 67 EHHHHHH 73
Score = 36.9 bits (86), Expect = 7e-04
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 329 MVPEECLVQALYDFTPQEPGELEFR 353
M ALYDF P+ EL
Sbjct: 1 MAIVNQRAVALYDFEPENDNELRLA 25
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 78.7 bits (195), Expect = 6e-19
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+D+ Q EL G++IT + D WW G+I R+GLFP ++
Sbjct: 2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
Score = 69.1 bits (170), Expect = 2e-15
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+EAI + D+ A +DEL+ +++ + ED W+ +++G+ GL P N++
Sbjct: 2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDG-GWWEGQINGRRGLFPDNFVR 54
Score = 33.3 bits (77), Expect = 0.011
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 334 CLVQALYDFTPQEPGELEFRRDLKI 358
+D+ Q EL I
Sbjct: 2 VEAIVEFDYQAQHDDELTISVGEII 26
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 79.4 bits (196), Expect = 6e-19
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 17/86 (19%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
AL+D+ + +L FR GD + V D S + WW +KG
Sbjct: 5 SSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKG------------ 52
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKNH 237
+G IPSNY+ +
Sbjct: 53 -----TGLGQQLQGYIPSNYVAEDSG 73
Score = 63.2 bits (154), Expect = 4e-13
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---------DGKEGLIPSNYI 53
+A D+ A ++LSFR L++L+ + W+ A +G IPSNY+
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQVLDTSHE-GWWLARHLEKKGTGLGQQLQGYIPSNYV 68
Query: 54 EMKNH 58
+
Sbjct: 69 AEDSG 73
Score = 36.2 bits (84), Expect = 0.001
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
AL+D+ + +L FR K++
Sbjct: 5 SSGQYFVALFDYQARTAEDLSFRAGDKLQ 33
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 78.5 bits (194), Expect = 9e-19
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 18/78 (23%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
LV ALYD+ + P E+ ++GD++T+ + +++ WW E+
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVN---------------- 46
Query: 216 YRAELDGKEGLIPSNYIE 233
+ ++G +P+ Y++
Sbjct: 47 --GKTYERQGFVPAAYVK 62
Score = 62.0 bits (151), Expect = 8e-13
Identities = 12/60 (20%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--------DGKEGLIPSNYIE 54
+A +D+ + E++ +K +L +LN + +W++ E+ ++G +P+ Y++
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVKITVNGKTYERQGFVPAAYVK 62
Score = 35.8 bits (83), Expect = 0.001
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 335 LVQALYDFTPQEPGELEFRRD 355
LV ALYD+ + P E+ ++
Sbjct: 3 LVLALYDYQEKSPREVTMKKG 23
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 78.4 bits (194), Expect = 1e-18
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
+ + + L+ +T EL FR G++I + + + WW GE+ ++G+FP +
Sbjct: 3 MGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFA 60
Score = 63.8 bits (156), Expect = 2e-13
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIE 54
+ T EDEL+FR+ +++ +++ E + W++ EL+GKEG+ P N+
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61
Score = 36.1 bits (84), Expect = 0.001
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 330 VPEECLVQALYDFTPQEPGELEFRRD 355
+ + + L+ +T EL FR
Sbjct: 3 MGAKEYCRTLFPYTGTNEDELTFREG 28
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 78.9 bits (195), Expect = 1e-18
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 34/102 (33%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
MV L +ALYD+ + +L F +G+ + + S+ WW
Sbjct: 1 MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA----------------- 43
Query: 210 EDDMNWYRAELDGKEGLIPSNYIE----------MKNHDWYY 241
R+ G+ G IPS Y+ H ++
Sbjct: 44 -------RSLTTGETGYIPSIYLAPVDRLDYKDDDDKHHHHH 78
Score = 64.7 bits (158), Expect = 1e-13
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE------- 54
A +D+ A ED+LSF K + +ILN + +W+ A G+ G IPS Y+
Sbjct: 9 EALYDYEARTEDDLSFHKGEKFQILNSSEG-DWWEARSLTTGETGYIPSIYLAPVDRLDY 67
Query: 55 ---MKNHDWYY 62
H ++
Sbjct: 68 KDDDDKHHHHH 78
Score = 39.6 bits (93), Expect = 1e-04
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 329 MVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
MV L +ALYD+ + +L F + K +
Sbjct: 1 MVQISTLFEALYDYEARTEDDLSFHKGEKFQ 31
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 78.5 bits (194), Expect = 1e-18
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
+ ++ + Q EL + GD++T+ ++ D WW GE+ R+G+FP ++
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61
Score = 65.8 bits (161), Expect = 5e-14
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
+ A +DEL+ ++ ++ ++N + D+ W+ EL+G+ G+ P N++++
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
Score = 35.3 bits (82), Expect = 0.003
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ ++ + Q EL +
Sbjct: 10 CKVIFPYEAQNDDELTIKEG 29
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 78.5 bits (194), Expect = 1e-18
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNM 209
+ + ++ + Q EL + GD++T+ ++ D WW GE+ R+G+FP ++ +
Sbjct: 7 KSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 66
Query: 210 EDDMN 214
D
Sbjct: 67 PPDFE 71
Score = 67.0 bits (164), Expect = 2e-14
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEMKNHDW 60
+ A +DEL+ ++ ++ ++N + D+ W+ EL+G+ G+ P N++++ D+
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDF 70
Score = 35.0 bits (81), Expect = 0.003
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+ + ++ + Q EL +
Sbjct: 7 KSKDYCKVIFPYEAQNDDELTIKEG 31
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 78.0 bits (193), Expect = 1e-18
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
A YD+ E EL F D I + D WW GE+ KGLFP+ Y+
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
Score = 62.6 bits (153), Expect = 4e-13
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN 57
A A++D++A ++EL+F ++ + + DD +W+ EL DG +GL PSNY+ + N
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDD-DWWLGELEKDGSKGLFPSNYVSLGN 58
Score = 34.5 bits (80), Expect = 0.003
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
A YD+ E EL F + KI
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKI 25
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 77.8 bits (192), Expect = 2e-18
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM--NW 215
L + E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 4 PPLPPY-SAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62
Query: 216 YRAELDGKE 224
A D +E
Sbjct: 63 VLALYDYQE 71
Score = 66.6 bits (163), Expect = 2e-14
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
M A ++A E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 1 MGAPPLPPYSAGG-REVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVK 52
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 78.3 bits (193), Expect = 2e-18
Identities = 18/69 (26%), Positives = 25/69 (36%)
Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA 196
S S + P + L GD++ VT + W GE+
Sbjct: 1 GSSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG 60
Query: 197 RKGLFPATY 205
RKGLFP T+
Sbjct: 61 RKGLFPFTH 69
Score = 66.3 bits (162), Expect = 4e-14
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+AI K A + L+ ++K+ M + + E++G++GL P ++++
Sbjct: 20 KAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGEVNGRKGLFPFTHVKI 72
Score = 30.9 bits (70), Expect = 0.15
Identities = 5/44 (11%), Positives = 8/44 (18%)
Query: 316 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
S S + P + L +K
Sbjct: 1 GSSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVK 44
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 77.7 bits (192), Expect = 2e-18
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ ++ QE EL + G+V+ V ++++ WW +G PATY+
Sbjct: 6 SGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60
Score = 66.9 bits (164), Expect = 2e-14
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+ + ++ ELS + +V+ ++ + W+ ++G +P+ Y+E +N
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNES-GWWFVSTSEEQGWVPATYLEAQN 64
Score = 31.9 bits (73), Expect = 0.039
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 331 PEECLVQALYDFTPQEPGELEFRR 354
+ ++ QE EL +
Sbjct: 6 SGLEQYVVVSNYKKQENSELSLQA 29
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 77.3 bits (191), Expect = 2e-18
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
+ ++ + Q EL + GD++T+ ++ D WW GE+ R+G+FP ++
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56
Score = 65.4 bits (160), Expect = 5e-14
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
+ A +DEL+ ++ ++ ++N + D+ W+ EL+G+ G+ P N++++
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58
Score = 34.5 bits (80), Expect = 0.005
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+ ++ + Q EL +
Sbjct: 5 CKVIFPYEAQNDDELTIKEG 24
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 79.7 bits (196), Expect = 3e-18
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYY 62
A A++DF A ELS ++ ++KILN + W+R E+ G+ G PSNY+E ++
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLP 67
Query: 63 GRITRADAERLLSNKHEGAFLIRVSESSPGD 93
+ + G L + + D
Sbjct: 68 ETGGGSGSSMTYKLILNGKTLKGETTTEAVD 98
Score = 77.8 bits (191), Expect = 1e-17
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 25/118 (21%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
+A YDF ++ EL + GD+I + LN +
Sbjct: 6 GTAKARYDFCARDRSELSLKEGDIIKI-------------------------LNKKGQQG 40
Query: 215 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGD 272
W+R E+ G+ G PSNY+E ++ + + G L + + D
Sbjct: 41 WWRGEIYGRIGWFPSNYVEEDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVD 98
Score = 35.1 bits (80), Expect = 0.012
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 334 CLVQALYDFTPQEPGELEFRR 354
+A YDF ++ EL +
Sbjct: 6 GTAKARYDFCARDRSELSLKE 26
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 77.9 bits (192), Expect = 3e-18
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 25/101 (24%)
Query: 136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG 195
+ S +R+ E+ +V ALYD+ +L F++GD + V + S WW
Sbjct: 7 GPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKA--- 62
Query: 196 ARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 236
R+ KEG IPSNY+ +
Sbjct: 63 ---------------------RSLATRKEGYIPSNYVARVD 82
Score = 65.9 bits (161), Expect = 5e-14
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEMKN 57
+A +D+ A ++LSF+K + +L + W++A KEG IPSNY+ +
Sbjct: 28 VVALYDYEAIHHEDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYVARVD 82
Score = 41.7 bits (98), Expect = 2e-05
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 315 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
+ S +R+ E+ +V ALYD+ +L F++ ++
Sbjct: 7 GPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMV 51
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 77.4 bits (191), Expect = 4e-18
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
+ LYD+ EL +VITV D W GE G +KG P TY+
Sbjct: 15 SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71
Score = 65.1 bits (159), Expect = 9e-14
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
A +D++A ELS +V+ + ++ D +W E ++G +P Y+E+
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73
Score = 32.4 bits (74), Expect = 0.034
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+ LYD+ EL D
Sbjct: 15 SNNRKARVLYDYDAANSTELSLLAD 39
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 77.0 bits (190), Expect = 4e-18
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 21/79 (26%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
V A + + +L F + I VT D W+ GE G
Sbjct: 10 VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNG----------------- 52
Query: 217 RAELDGKEGLIPSNYIEMK 235
D EG+ P +++ ++
Sbjct: 53 ----DVIEGIFPKSFVAVQ 67
Score = 60.8 bits (148), Expect = 2e-12
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG-----KEGLIPSNYIEMK 56
+A+ + + ED+L+F K Q + + ++ED WY E EG+ P +++ ++
Sbjct: 10 VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDA-EWYFGEYQDSNGDVIEGIFPKSFVAVQ 67
Score = 35.4 bits (82), Expect = 0.002
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
V A + + +L F +D +I
Sbjct: 10 VVAQFPYKSDYEDDLNFEKDQEI 32
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 76.5 bits (189), Expect = 5e-18
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYI 206
V+ALYD+ + EL F RG +I + WW G+ + FP+ Y+
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
Score = 61.1 bits (149), Expect = 1e-12
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGK-EGLIPSNYIEM 55
A +D+ A DEL+F + ++ ++ E W++ + + + PSNY+E
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSKEPG-GWWKGDYGTRIQQYFPSNYVED 62
Score = 33.0 bits (76), Expect = 0.016
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
V+ALYD+ + EL F R
Sbjct: 10 VKALYDYKAKRSDELTFCRG 29
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 76.6 bits (189), Expect = 5e-18
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNME 210
+C V+AL+D+ Q EL F + +I ++ + WW G+ G +K L FP+ Y+ M
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
Query: 211 DD 212
+
Sbjct: 64 NP 65
Score = 60.4 bits (147), Expect = 3e-12
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLI-PSNYIE 54
A D+ A EDEL+F KS +++ + ++ W+R + GK+ L PSNY+E
Sbjct: 9 VKALFDYKAQREDELTFIKSAIIQNVEKQEG-GWWRGDYGGKKQLWFPSNYVE 60
Score = 35.7 bits (83), Expect = 0.002
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+C V+AL+D+ Q EL F +
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKS 28
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 76.0 bits (188), Expect = 5e-18
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGARKGLFPATYI 206
++A+Y + Q E+ GD+ITV D W +GE KGLFP +Y
Sbjct: 3 MEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53
Score = 66.8 bits (164), Expect = 1e-14
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
A + + A +DE+S ++ ++ +D W E DG +GL P++Y +
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
Score = 32.9 bits (76), Expect = 0.011
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
++A+Y + Q E+
Sbjct: 3 MEAIYAYEAQGDDEISIDPG 22
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 77.1 bits (190), Expect = 6e-18
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
+ALY F + E+ F GD+I V ++ + W +G G FP Y+
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59
Score = 63.3 bits (154), Expect = 6e-13
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIE 54
A + F A DE+SF ++++ + W G G P NY+E
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
Score = 35.2 bits (81), Expect = 0.005
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+ALY F + E+ F
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSG 27
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 77.1 bits (190), Expect = 6e-18
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 23/83 (27%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
+ + +A YDF E+ FR GD++ + + Q G
Sbjct: 16 DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRG-------------------- 55
Query: 213 MNWYRAELDGK-EGLIPSNYIEM 234
W A LDG+ GLIP+NY+++
Sbjct: 56 --WLLASLDGQTTGLIPANYVKI 76
Score = 76.8 bits (189), Expect = 1e-17
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMN---WYRAELDGK-EGLIPSNYIEM 55
+ A A++DF A +++E+SFR +L + E W A LDG+ GLIP+NY+++
Sbjct: 18 VVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKI 76
Score = 36.3 bits (84), Expect = 0.002
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 332 EECLVQALYDFTPQEPGELEFRR 354
+ + +A YDF E+ FR
Sbjct: 16 DHVVARAEYDFVAVSDEEISFRA 38
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 76.1 bits (188), Expect = 6e-18
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 25/83 (30%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+V A+YDF E +L RG + +++D HWW
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRAR---------------------- 41
Query: 216 YRAELDGKEGLIPSNYIEMKNHD 238
+ G EG IPSNY+ K +
Sbjct: 42 ---DKYGSEGYIPSNYVTGKKSN 61
Score = 69.6 bits (171), Expect = 2e-15
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
+A +DF AT +L + Q IL D W + G EG IPSNY+ K +
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61
Score = 36.1 bits (84), Expect = 0.001
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 335 LVQALYDFTPQEPGELEFRRDLKIK 359
+V A+YDF E +L R +
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYI 28
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 76.0 bits (188), Expect = 7e-18
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
I ++DF A ++DEL+ + + IL+ + +W+ +L GK GL+P+ +IE
Sbjct: 3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
Score = 68.7 bits (169), Expect = 2e-15
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 25/78 (32%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITV-TDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
YDF + EL + GD + + D+ + WW ++
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVD------------------- 45
Query: 216 YRAELDGKEGLIPSNYIE 233
GK GL+P+ +IE
Sbjct: 46 -----SGKSGLVPAQFIE 58
Score = 33.3 bits (77), Expect = 0.011
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 336 VQALYDFTPQEPGELEFRR 354
YDF + EL +
Sbjct: 5 GIVQYDFMAESQDELTIKS 23
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 76.1 bits (188), Expect = 7e-18
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHWWHGEIGARKGLFPATYI 206
+ALY + EL F G V V + W G + + GL P Y+
Sbjct: 11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63
Score = 72.7 bits (179), Expect = 1e-16
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+A A + A + ELSF V ++ + W L+GK GLIP NY+E
Sbjct: 11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
Score = 35.3 bits (82), Expect = 0.002
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 334 CLVQALYDFTPQEPGELEFRRD 355
+ALY + EL F
Sbjct: 11 RKAKALYACKAEHDSELSFTAG 32
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 75.8 bits (187), Expect = 9e-18
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 25/77 (32%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
A+ DFT Q+ G+L F++G+++ V ++ WW +
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAK----------------------- 49
Query: 217 RAELDGKEGLIPSNYIE 233
+ G EGL+P Y+E
Sbjct: 50 --DAKGNEGLVPRTYLE 64
Score = 71.5 bits (176), Expect = 3e-16
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
E IA DF A +L+F+K ++L ++ + D W + G EGL+P Y+E
Sbjct: 11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64
Score = 34.6 bits (80), Expect = 0.004
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 336 VQALYDFTPQEPGELEFRR 354
A+ DFT Q+ G+L F++
Sbjct: 13 YIAVGDFTAQQVGDLTFKK 31
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 76.4 bits (188), Expect = 1e-17
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 27/85 (31%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNM 209
+VQ LY F+ EL F +G+ + V ++ +D WW +
Sbjct: 15 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCK---------------- 58
Query: 210 EDDMNWYRAELDGKEGLIPSNYIEM 234
G+ GL+P NY+ +
Sbjct: 59 ---------NARGQVGLVPKNYVVV 74
Score = 70.6 bits (173), Expect = 1e-15
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRAE-LDGKEGLIPSNYIEM 55
+ F++ E+EL+F K + ++++ E+D W++ + G+ GL+P NY+ +
Sbjct: 20 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 74
Score = 38.2 bits (89), Expect = 4e-04
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+VQ LY F+ EL F +
Sbjct: 15 RVLHVVQTLYPFSSVTEEELNFEKG 39
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 74.9 bits (185), Expect = 1e-17
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNMED 211
+ V+AL+D+ Q EL F + +I ++ D WW G+ G +K L FP+ Y+ M +
Sbjct: 3 KSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMIN 61
Score = 61.5 bits (150), Expect = 1e-12
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLI-PSNYIE 54
A D+ A EDEL+F KS +++ + +D W+R + GK+ L PSNY+E
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDG-GWWRGDYGGKKQLWFPSNYVE 57
Score = 34.1 bits (79), Expect = 0.005
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 333 ECLVQALYDFTPQEPGELEFRRD 355
+ V+AL+D+ Q EL F +
Sbjct: 3 KSAVKALFDYKAQREDELTFTKS 25
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 76.0 bits (187), Expect = 1e-17
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 133 YHRTASVSRSQDVKLRDMV---PEECLVQALYDFTPQEPGELEFRRGDVITVTDR----- 184
+H ++ V + + P + A++D+ EL RRGD + V +
Sbjct: 5 HHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVS 64
Query: 185 SDQHWWHGEIGA-RKGLFPATYI 206
D+ WW G++ + R G+FP+ Y+
Sbjct: 65 GDEGWWTGQLPSGRVGVFPSNYV 87
Score = 60.6 bits (147), Expect = 5e-12
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIE 54
A D+ A ++EL+ R+ +++L+ + D W+ +L G+ G+ PSNY+
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
Score = 39.4 bits (92), Expect = 1e-04
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 312 YHRTASVSRSQDVKLRDMV---PEECLVQALYDFTPQEPGELEFRRDLKIK 359
+H ++ V + + P + A++D+ EL RR +++
Sbjct: 5 HHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQ 55
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 75.5 bits (186), Expect = 2e-17
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR-----KGLFPATYI 206
+ Q + +L G +I + ++ WW GE+ AR KG FPA+++
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64
Score = 58.6 bits (142), Expect = 2e-11
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGK-----EGLIPSNYIEM 55
A + A+ ++LS Q++ IL W++ EL + +G P++++++
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTS-GWWQGELQARGKKRQKGWFPASHVKL 66
Score = 33.6 bits (77), Expect = 0.013
Identities = 2/20 (10%), Positives = 5/20 (25%)
Query: 335 LVQALYDFTPQEPGELEFRR 354
+ Q + +L
Sbjct: 9 IAQVTSAYVASGSEQLSLAP 28
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 75.0 bits (185), Expect = 2e-17
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 156 LVQALYDFTP--QEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY--ILNMED 211
+ + P + L G+++ VT + W GE ++G FP T+ +L+ ++
Sbjct: 8 YARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQN 67
Score = 58.1 bits (141), Expect = 2e-11
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 3 AIAKHDFNATA--EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A A + L+ +++K+ + + E +GK G P ++ +
Sbjct: 9 ARVIQKRVPNAYDKTALALEVGELVKVTKINVS-GQWEGECNGKRGHFPFTHVRL 62
Score = 28.0 bits (63), Expect = 1.0
Identities = 2/22 (9%), Positives = 5/22 (22%), Gaps = 2/22 (9%)
Query: 335 LVQALYDFTP--QEPGELEFRR 354
+ + P + L
Sbjct: 8 YARVIQKRVPNAYDKTALALEV 29
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 75.1 bits (185), Expect = 2e-17
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V + +P + L+ ++GD+I + + W G + + G F Y+
Sbjct: 8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYV 63
Score = 60.1 bits (146), Expect = 5e-12
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ D L +K ++ I++ + L+ K G Y+++
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPM-GTWMGLLNNKVGTFKFIYVDV 65
Score = 29.3 bits (66), Expect = 0.35
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 330 VPEECLVQALYDFTPQEPGELEFRRD 355
V + +P + L+ ++
Sbjct: 8 FCGRARVHTDFTPSPYDTDSLKLKKG 33
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 74.1 bits (183), Expect = 3e-17
Identities = 14/59 (23%), Positives = 35/59 (59%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
++ I ++D++A +DEL+ R ++++ + + W EL+G+ G+ P N+++ +
Sbjct: 2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60
Score = 71.1 bits (175), Expect = 4e-16
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIGARKGLFPATYILNMEDD 212
YD+ EL R G++I + + W GE+ R+G+FP ++ ++ +
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60
Score = 31.4 bits (72), Expect = 0.050
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
YD+ EL R
Sbjct: 4 YIVEYDYDAVHDDELTIRVG 23
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 74.7 bits (184), Expect = 3e-17
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 22/88 (25%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
+ A+Y F + P EL + + + D
Sbjct: 10 AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDV----------------------T 47
Query: 211 DDMNWYRAELDGKEGLIPSNYIEMKNHD 238
+ W+ AE++GK+G +PSNYI
Sbjct: 48 GNTEWWLAEVNGKKGYVPSNYIRKTESG 75
Score = 72.0 bits (177), Expect = 3e-16
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYIEMKNHD 59
A + F A +ELS +Q LKIL +D + W+ AE++GK+G +PSNYI
Sbjct: 17 FAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG 75
Score = 36.2 bits (84), Expect = 0.001
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 330 VPEECLVQALYDFTPQEPGELEFRRD--LKIKRRKSAKTKDE 369
+ A+Y F + P EL + LKI K E
Sbjct: 10 AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTE 51
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 74.3 bits (183), Expect = 3e-17
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
P + L GD++ VT + W GE+ RKGLFP T+
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTH 54
Score = 61.6 bits (150), Expect = 1e-12
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+AI K A + L+ ++K+ M + + E++G++GL P ++++
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGEVNGRKGLFPFTHVKI 57
Score = 27.3 bits (61), Expect = 1.7
Identities = 2/24 (8%), Positives = 3/24 (12%)
Query: 331 PEECLVQALYDFTPQEPGELEFRR 354
P + L
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEV 24
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 74.3 bits (183), Expect = 4e-17
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 21/89 (23%)
Query: 148 RDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL 207
RD L+DF + EL FR GDV V + +Q WW +
Sbjct: 4 RDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLD------------ 51
Query: 208 NMEDDMNWYRAELDGKEGLIPSNYIEMKN 236
A +G +P NY+ +
Sbjct: 52 ---------EAGGAVAQGYVPHNYLAERE 71
Score = 62.4 bits (152), Expect = 7e-13
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-----GKEGLIPSNYIEMK 56
+ + DF + ++ELSFR V + E+ W+ LD +G +P NY+ +
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQ-WWWATLLDEAGGAVAQGYVPHNYLAER 70
Query: 57 N 57
Sbjct: 71 E 71
Score = 35.1 bits (81), Expect = 0.003
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 327 RDMVPEECLVQALYDFTPQEPGELEFRRDLKI 358
RD L+DF + EL FR
Sbjct: 4 RDQAHLGPKYVGLWDFKSRTDEELSFRAGDVF 35
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 73.8 bits (182), Expect = 4e-17
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
+A+YD++ Q+ E+ FR GD I D W +G + R G+ PA YI
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
Score = 56.5 bits (137), Expect = 7e-11
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM 55
A +D++A EDE+SFR + + DD W + G+ G++P+NYIE
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDD-GWMYGTVQRTGRTGMLPANYIEF 62
Score = 35.3 bits (82), Expect = 0.002
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 336 VQALYDFTPQEPGELEFR 353
+A+YD++ Q+ E+ FR
Sbjct: 9 YRAMYDYSAQDEDEVSFR 26
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 74.3 bits (183), Expect = 5e-17
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 28/95 (29%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
L ALYD+ +L F +G+ + + WW
Sbjct: 5 GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEA-------------------- 44
Query: 213 MNWYRAELDGKEGLIPSNYIEMKNH----DWYYGR 243
R+ G+ G IPSNY+ +
Sbjct: 45 ----RSLTTGETGYIPSNYVAPVDSIQGEQKLISE 75
Score = 63.6 bits (155), Expect = 3e-13
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKNH--- 58
+A +D+NAT +LSF K + +IL +W+ A G+ G IPSNY+ +
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPG-DWWEARSLTTGETGYIPSNYVAPVDSIQG 68
Query: 59 -DWYYGR 64
Sbjct: 69 EQKLISE 75
Score = 35.8 bits (83), Expect = 0.002
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 332 EECLVQALYDFTPQEPGELEFRRDLKIK 359
L ALYD+ +L F + K +
Sbjct: 5 GVTLFVALYDYNATRWTDLSFHKGEKFQ 32
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 73.8 bits (182), Expect = 5e-17
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+ AL+ ++ P EL+ ++G+ I V + W G
Sbjct: 9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGL---------------------- 46
Query: 216 YRAELDGKEGLIPSNYIE 233
+ L G+ G+ PS+Y+
Sbjct: 47 --SLLTGRTGIFPSDYVI 62
Score = 64.2 bits (157), Expect = 1e-13
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
+A H ++A +EL +K + +++L D W + L G+ G+ PS+Y+
Sbjct: 11 VALHTYSAHRPEELDLQKGEGIRVLGKYQD-GWLKGLSLLTGRTGIFPSDYVI 62
Score = 36.0 bits (84), Expect = 0.002
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 335 LVQALYDFTPQEPGELEFRR 354
+ AL+ ++ P EL+ ++
Sbjct: 9 MFVALHTYSAHRPEELDLQK 28
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 73.9 bits (182), Expect = 5e-17
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 27/85 (31%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNM 209
+VQ LY F+ EL F +G+ + V ++ +D WW +
Sbjct: 4 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN--------------- 48
Query: 210 EDDMNWYRAELDGKEGLIPSNYIEM 234
G+ GL+P NY+ +
Sbjct: 49 ----------ARGQVGLVPKNYVVV 63
Score = 68.9 bits (169), Expect = 4e-15
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRAE-LDGKEGLIPSNYIEM 55
+ F++ E+EL+F K + ++++ E+D W++ + G+ GL+P NY+ +
Sbjct: 9 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 63
Score = 36.5 bits (85), Expect = 0.001
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 331 PEECLVQALYDFTPQEPGELEFRR 354
+VQ LY F+ EL F +
Sbjct: 4 RVLHVVQTLYPFSSVTEEELNFEK 27
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 73.9 bits (182), Expect = 5e-17
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
E + +T Q E+ F +G + V ++ + WW+ ++G PA+Y+
Sbjct: 6 SGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYL 60
Score = 65.0 bits (159), Expect = 9e-14
Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ + + + ++DE+ F K ++++ + W+ GKEG P++Y++
Sbjct: 10 KYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLE-GWWYIRYLGKEGWAPASYLK 61
Score = 30.7 bits (70), Expect = 0.093
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
E + +T Q E+ F +
Sbjct: 6 SGEEKYVTVQPYTSQSKDEIGFEKG 30
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 73.4 bits (181), Expect = 6e-17
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
ALYDF P+ EL GD++ ++ + Q W E G++ GL P ++
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
Score = 58.7 bits (143), Expect = 1e-11
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM 55
A+A +DF ++EL + ++ I W AE K GL+P ++
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQ-GWLVAENESGSKTGLVPEEFVSY 57
Score = 34.1 bits (79), Expect = 0.006
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 336 VQALYDFTPQEPGELEFR 353
ALYDF P+ EL
Sbjct: 4 AVALYDFEPENDNELRLA 21
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 73.0 bits (180), Expect = 9e-17
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGA-RKGLFPATYI 206
V+ALYD+ QE EL F+ GD +T D+ W G + + + GL+PA Y+
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
Score = 65.3 bits (160), Expect = 5e-14
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE 54
A +D++ +DELSF+ L L ED+ W R L G+ GL P+NY+E
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58
Score = 34.9 bits (81), Expect = 0.003
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
V+ALYD+ QE EL F+
Sbjct: 6 VRALYDYDGQEQDELSFKAG 25
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 74.1 bits (182), Expect = 1e-16
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR---KGLFPATYI 206
LYDF ++ EL G+ + + + W+ + R GL P ++
Sbjct: 10 VLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60
Score = 65.6 bits (160), Expect = 1e-13
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMKNHD 59
AI +DF A DEL+ + L I + W+ A+ G GL+P ++ + D
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNC-EWFIAKPIGRLGGPGLVPVGFVSII--D 64
Query: 60 WYYGRITRADAERLLSN 76
G T D + +
Sbjct: 65 IATGYATGNDVIEDIKS 81
Score = 32.4 bits (74), Expect = 0.059
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 338 ALYDFTPQEPGELEFR 353
LYDF ++ EL
Sbjct: 10 VLYDFKAEKADELTTY 25
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 71.7 bits (176), Expect = 2e-16
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 142 SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI 194
+ VK D + LV ALYD+ + P E+ ++GD++T+ + +++ WW E+
Sbjct: 9 AAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
Score = 48.6 bits (116), Expect = 5e-08
Identities = 9/40 (22%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD 42
+A +D+ + E++ +K +L +LN + +W++ E++
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVN 62
Score = 39.3 bits (92), Expect = 7e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 321 SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRR 354
+ VK D + LV ALYD+ + P E+ ++
Sbjct: 9 AAYVKKLDSGTGKELVLALYDYQEKSPREVTMKK 42
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 71.9 bits (177), Expect = 3e-16
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
I ++DF A ++DEL+ + + IL+ + +W+ +L GK GL+P+ +IE
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
Score = 66.1 bits (162), Expect = 3e-14
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 25/78 (32%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITV-TDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
YDF + EL + GD + + D+ + WW ++
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDS------------------ 50
Query: 216 YRAELDGKEGLIPSNYIE 233
GK GL+P+ +IE
Sbjct: 51 ------GKSGLVPAQFIE 62
Score = 31.8 bits (73), Expect = 0.040
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 336 VQALYDFTPQEPGELEFRR 354
YDF + EL +
Sbjct: 9 GIVQYDFMAESQDELTIKS 27
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 71.5 bits (176), Expect = 3e-16
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATY 205
+A+Y + PQ ELE R GD + V + D W+ G + G FP Y
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNY 60
Score = 59.2 bits (144), Expect = 9e-12
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
A + + EDEL R+ + ++ DD W+ K G P NY+
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDD-GWFVGVSRRTQKFGTFPGNYVA 62
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+A+Y + PQ ELE R
Sbjct: 10 YRAMYQYRPQNEDELELREG 29
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 70.8 bits (174), Expect = 5e-16
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 167 EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
P E+ ++GD++T+ + +++ WW E+ R+G PA Y+ ++
Sbjct: 2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 47
Score = 55.0 bits (133), Expect = 2e-10
Identities = 10/45 (22%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 15 DELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
E++ +K +L +LN + +W++ E++ ++G +P+ Y++ +
Sbjct: 4 REVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVKKLDSG 47
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 71.4 bits (175), Expect = 5e-16
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+ + E+ F G + V ++ + WW+ G +G P+ Y+
Sbjct: 6 SGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYL 60
Score = 61.0 bits (148), Expect = 3e-12
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+ + + E+SF +++L ++ W+ EG PS+Y+
Sbjct: 12 MTCSAYQKVQDSEISFPAGVEVQVLEKQES-GWWYVRFGELEGWAPSHYLV 61
Score = 27.8 bits (62), Expect = 1.5
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKI 358
+ + E+ F +++
Sbjct: 6 SGATSYMTCSAYQKVQDSEISFPAGVEV 33
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 71.8 bits (176), Expect = 6e-16
Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 33/102 (32%)
Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEP--------GELEFRRGDVITVTDRSDQHWWH 191
S S + AL+D+ P EL F+ G +I V D +
Sbjct: 3 SGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGF- 61
Query: 192 GEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
YR E + GLIP N +
Sbjct: 62 ------------------------YRGETCARLGLIPCNMVS 79
Score = 71.1 bits (174), Expect = 1e-15
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 4 IAKHDFNA--------TAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A D++ AE+EL F++ Q++K+ +D +YR E + GLIP N +
Sbjct: 21 VALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVS 79
Score = 29.5 bits (66), Expect = 0.54
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 8/49 (16%)
Query: 319 SRSQDVKLRDMVPEECLVQALYDFTPQEP--------GELEFRRDLKIK 359
S S + AL+D+ P EL F+ IK
Sbjct: 3 SGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIK 51
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 70.8 bits (174), Expect = 7e-16
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 55
+A + F ++E +S + + L ++ + W R +G EG +P++Y+ +
Sbjct: 9 HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63
Score = 65.8 bits (161), Expect = 3e-14
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 24/83 (28%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
A+Y F G + G+ +++ + W
Sbjct: 5 SSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGW--------------------- 43
Query: 212 DMNWYRAELDGKEGLIPSNYIEM 234
+G EG +P++Y+ +
Sbjct: 44 ---TRVRRKEGGEGYVPTSYLRV 63
Score = 31.9 bits (73), Expect = 0.047
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 331 PEECLVQALYDFTPQEPGELEFR 353
A+Y F G +
Sbjct: 5 SSGGHCVAIYHFEGSSEGTISMA 27
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 70.8 bits (174), Expect = 7e-16
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 25/85 (29%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+ +V ALY + P +L F++G+ + V + + WW
Sbjct: 5 EQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGE-WWKA------------------- 44
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
++ L KEG IPSNY+ N
Sbjct: 45 -----KSLLTKKEGFIPSNYVAKLN 64
Score = 63.4 bits (155), Expect = 3e-13
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN 57
+A + ++ D+LSF+K + +K+L + W++A+ L KEG IPSNY+ N
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKMKVLEEHGE--WWKAKSLLTKKEGFIPSNYVAKLN 64
Score = 36.1 bits (84), Expect = 0.001
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
+ +V ALY + P +L F++ K+K
Sbjct: 5 EQGDIVVALYPYDGIHPDDLSFKKGEKMK 33
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 70.7 bits (173), Expect = 9e-16
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 155 CLVQALYDFTPQ-EPGELEFRRGDVITVTDRSDQHWWHGEI------GARKGLFPATYI 206
V+AL DF +P L R GDVITV ++ W G I R G FP +
Sbjct: 19 LKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV 77
Score = 49.1 bits (117), Expect = 5e-08
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 1 MEAIAKHDF-NATAEDELSFRKSQVLKILNMEDDMNWYRAELDG------KEGLIPSNYI 53
++ A DF N L+ R V+ +L D ++ + + G P +
Sbjct: 19 LKVRALKDFWNLHDPTALNVRAGDVITVLEQHPD-GRWKGHIHESQRGTDRIGYFPPGIV 77
Query: 54 EM 55
E+
Sbjct: 78 EV 79
Score = 28.7 bits (64), Expect = 0.65
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 334 CLVQALYDFT-PQEPGELEFRRD 355
V+AL DF +P L R
Sbjct: 19 LKVRALKDFWNLHDPTALNVRAG 41
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 71.9 bits (176), Expect = 1e-15
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 23/78 (29%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
LY+F + EL+ G+ +++ D W+ + R
Sbjct: 8 TLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRL-------------------- 47
Query: 219 ELDGKEGLIPSNYIEMKN 236
G GL+P +Y+ + +
Sbjct: 48 ---GGPGLVPVSYVRIID 62
Score = 68.4 bits (167), Expect = 2e-14
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMKN 57
A+ ++F A +DEL + L I D W+ A+ G GL+P +Y+ + +
Sbjct: 6 AVTLYEFKAERDDELDVSPGENLSICAHYDY-EWFIAKPINRLGGPGLVPVSYVRIID 62
Score = 31.4 bits (71), Expect = 0.15
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 338 ALYDFTPQEPGELEFRR 354
LY+F + EL+
Sbjct: 8 TLYEFKAERDDELDVSP 24
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 70.3 bits (172), Expect = 1e-15
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 166 QEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
P E+ ++GD++T+ + +++ WW E+ R+G PA Y+
Sbjct: 3 MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 43
Score = 58.3 bits (141), Expect = 3e-11
Identities = 11/45 (24%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 11 ATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A E++ +K +L +LN + +W++ E++ ++G +P+ Y++
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVKK 45
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 69.6 bits (171), Expect = 1e-15
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 25/81 (30%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
++ LV AL+ + P G+L F +G+ + + ++S WW
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKA-------------------- 43
Query: 213 MNWYRAELDGKEGLIPSNYIE 233
++ G+EG IP N++
Sbjct: 44 ----QSLTTGQEGFIPFNFVA 60
Score = 63.9 bits (156), Expect = 2e-13
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
IA H + + + +L F K + L+IL + W++A+ G+EG IP N++
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGE--WWKAQSLTTGQEGFIPFNFVA 60
Score = 37.7 bits (88), Expect = 3e-04
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 332 EECLVQALYDFTPQEPGELEFRRDLKIK 359
++ LV AL+ + P G+L F + +++
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLR 32
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 70.0 bits (172), Expect = 1e-15
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 26/85 (30%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
EE +V A +D+ Q+ EL+ ++ + + + D S WW
Sbjct: 5 AEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSK-SWWRVR------------------ 45
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
K G +PSNY+E KN
Sbjct: 46 -------NSMNKTGFVPSNYVERKN 63
Score = 65.4 bits (160), Expect = 7e-14
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN 57
+AK D+ A E EL +K++ L +L+ W+R K G +PSNY+E KN
Sbjct: 10 VVAKFDYVAQQEQELDIKKNERLWLLDDSKS--WWRVRNSMNKTGFVPSNYVERKN 63
Score = 38.1 bits (89), Expect = 3e-04
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
EE +V A +D+ Q+ EL+ +++
Sbjct: 5 AEEVVVVAKFDYVAQQEQELDIKKN 29
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 70.0 bits (172), Expect = 1e-15
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+Q LY+F + P EL +G+ + V D S + W R G P+ +
Sbjct: 8 LKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNIL 59
Score = 66.9 bits (164), Expect = 2e-14
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
++ ++F A EL+ + + L++L+ W G+ G IPSN +E +
Sbjct: 8 LKMQVLYEFEARNPRELTVVQGEKLEVLDHSKR-WWLVKNEAGRSGYIPSNILEPLS 63
Score = 34.9 bits (81), Expect = 0.003
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 334 CLVQALYDFTPQEPGELEFRRD 355
+Q LY+F + P EL +
Sbjct: 8 LKMQVLYEFEARNPRELTVVQG 29
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 76.8 bits (189), Expect = 2e-15
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 60 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
W++ ++ DAE LL + G+FL R S + GDFSLSV+ D V H ++
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 119 LWVVKFNSLNELVEYH 134
KF +L ELVEY+
Sbjct: 64 YGGEKFATLTELVEYY 79
Score = 76.8 bits (189), Expect = 2e-15
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
W++ ++ DAE LL + G+FL R S + GDFSLSV+ D V H ++
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 298 LWVVKFNSLNELVEYH 313
KF +L ELVEY+
Sbjct: 64 YGGEKFATLTELVEYY 79
Score = 36.4 bits (84), Expect = 0.016
Identities = 33/152 (21%), Positives = 50/152 (32%), Gaps = 33/152 (21%)
Query: 59 DWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVK------------------ 99
WY+G ++ AE LL K E FL+R S S PGDF LSV
Sbjct: 109 RWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIK 168
Query: 100 --CSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 157
C G + G F+SL +LVE+ + + + +
Sbjct: 169 VMCEGGRY-------TVGGL----ETFDSLTDLVEHFKKTGIEEASG-AFVYLRQPYYAT 216
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHW 189
+ EL ++ T + +
Sbjct: 217 RVNAADIENRVLELNKKQESEDTAKAGFWEEF 248
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 69.3 bits (170), Expect = 2e-15
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 23/80 (28%)
Query: 157 VQALYDFTPQEP-GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+ALYDF P+ P E+ ++GD++ + + D + D +W
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSDW 48
Query: 216 YRAEL-DGKEGLIPSNYIEM 234
++ +G G IP NYIE+
Sbjct: 49 WKVRTKNGNIGYIPYNYIEI 68
Score = 61.2 bits (149), Expect = 2e-12
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 3 AIAKHDFNA-TAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIEM 55
A A +DF E E++ +K ++ IL+ +D D +W++ +G G IP NYIE+
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
Score = 33.1 bits (76), Expect = 0.013
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 336 VQALYDFTPQEP-GELEFRRD 355
+ALYDF P+ P E+ ++
Sbjct: 10 ARALYDFVPENPEMEVALKKG 30
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 76.5 bits (188), Expect = 2e-15
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 60 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
W++ ++ DAE LL + G+FL R S + GDFSLSV+ D V H ++
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 119 LWVVKFNSLNELVEYH 134
KF +L ELVEY+
Sbjct: 64 YGGEKFATLTELVEYY 79
Score = 76.5 bits (188), Expect = 2e-15
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
W++ ++ DAE LL + G+FL R S + GDFSLSV+ D V H ++
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 298 LWVVKFNSLNELVEYH 313
KF +L ELVEY+
Sbjct: 64 YGGEKFATLTELVEYY 79
Score = 34.5 bits (79), Expect = 0.058
Identities = 33/152 (21%), Positives = 49/152 (32%), Gaps = 33/152 (21%)
Query: 59 DWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVK------------------ 99
WY+G ++ AE LL K E FL+R S S PGDF LSV
Sbjct: 109 RWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIK 168
Query: 100 --CSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 157
C G G F+SL +LVE+ + + + +
Sbjct: 169 VMCEGGRYT-------VGGL----ETFDSLTDLVEHFKKTGIEEASGA-FVYLRQPYYAT 216
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHW 189
+ EL ++ T + +
Sbjct: 217 RVNAADIENRVLELNKKQESEDTAKAGFWEEF 248
Score = 33.8 bits (77), Expect = 0.091
Identities = 32/139 (23%), Positives = 47/139 (33%), Gaps = 33/139 (23%)
Query: 238 DWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVK------------------ 278
WY+G ++ AE LL K E FL+R S S PGDF LSV
Sbjct: 109 RWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIK 168
Query: 279 --CSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 336
C G G F+SL +LVE+ + + + +
Sbjct: 169 VMCEGGRYT-------VGGL----ETFDSLTDLVEHFKKTGIEEASGA-FVYLRQPYYAT 216
Query: 337 QALYDFTPQEPGELEFRRD 355
+ EL +++
Sbjct: 217 RVNAADIENRVLELNKKQE 235
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 69.3 bits (170), Expect = 2e-15
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 26/85 (30%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
V YDF + EL ++ DV+ V D S WW
Sbjct: 6 GALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSR-KWWKVR------------------ 46
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
+ G+EG +P N +
Sbjct: 47 -------DPAGQEGYVPYNILTPYP 64
Score = 63.1 bits (154), Expect = 4e-13
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMKN 57
+ +DF A ELS ++ VL++L+ W++ G+EG +P N +
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVLDDSRK--WWKVRDPAGQEGYVPYNILTPYP 64
Score = 37.7 bits (88), Expect = 4e-04
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
V YDF + EL ++
Sbjct: 6 GALKWVLCNYDFQARNSSELSVKQR 30
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 69.2 bits (170), Expect = 2e-15
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 28/91 (30%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
EE +V A +D+T Q+ EL+ ++ + + + D S WW
Sbjct: 3 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVR------------------- 42
Query: 213 MNWYRAELDGKEGLIPSNYIEMK--NHDWYY 241
+ G +PSNY+E K +H ++
Sbjct: 43 ------NAANRTGYVPSNYVERKLEHHHHHH 67
Score = 64.2 bits (157), Expect = 1e-13
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK--NHD 59
IAK D+ A + EL +K++ L +L+ W+R + G +PSNY+E K +H
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLDDSKT--WWRVRNAANRTGYVPSNYVERKLEHHH 64
Query: 60 WYY 62
++
Sbjct: 65 HHH 67
Score = 37.2 bits (87), Expect = 5e-04
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 332 EECLVQALYDFTPQEPGELEFRRD 355
EE +V A +D+T Q+ EL+ +++
Sbjct: 3 EEVIVIAKWDYTAQQDQELDIKKN 26
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 69.2 bits (170), Expect = 3e-15
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
V+ LYDFT + EL + +V+ V + Q W + G P +
Sbjct: 6 SGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59
Score = 65.0 bits (159), Expect = 7e-14
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+DF A +ELS K +VL++L W G+ G +P N +
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDGRQ-WWKLRSRSGQAGYVPCNILG 60
Score = 35.7 bits (83), Expect = 0.002
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 332 EECLVQALYDFTPQEPGELEFRRD 355
V+ LYDFT + EL +D
Sbjct: 6 SGKYVKILYDFTARNANELSVLKD 29
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 68.4 bits (168), Expect = 3e-15
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 156 LVQALYDFTPQ-EPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
+ +A YDF P EL ++GDVI +T W G++ G+++G P Y+
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM 55
Score = 58.0 bits (141), Expect = 2e-11
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 3 AIAKHDFNATA-EDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
A +DF + EL +K V+ I E W +L KEG +P+ Y++
Sbjct: 3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPS-GWSLGKLLDGSKEGWVPTAYMK 56
Score = 28.7 bits (65), Expect = 0.44
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 335 LVQALYDFTPQ-EPGELEFRRD 355
+ +A YDF P EL ++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKG 23
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 68.9 bits (169), Expect = 3e-15
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATY 205
V+ F ++ E+ ++ DV+ V + D W +GE G FP +
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDF 69
Score = 55.4 bits (134), Expect = 3e-10
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
F A DE++ +++ V+ +L ED W E DG+ G P ++
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQED--GWLYGERLRDGETGWFPEDFAR 71
Score = 33.1 bits (76), Expect = 0.018
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 336 VQALYDFTPQEPGELEFRR 354
V+ F ++ E+ ++
Sbjct: 20 VEITKAFFAKQADEVTLQQ 38
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 69.1 bits (169), Expect = 4e-15
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 26/100 (26%)
Query: 136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG 195
+ + + + EE +V A +D+T Q+ EL+ ++ + + + D S WW
Sbjct: 13 DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVR-- 69
Query: 196 ARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
+ G +PSNY+E K
Sbjct: 70 -----------------------NAANRTGYVPSNYVERK 86
Score = 65.2 bits (159), Expect = 9e-14
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIEMK 56
IAK D+ A + EL +K++ L +L+ W+R + G +PSNY+E K
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLLDDSKT--WWRVRNAANRTGYVPSNYVERK 86
Score = 37.9 bits (88), Expect = 5e-04
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 315 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
+ + + + EE +V A +D+T Q+ EL+ +++
Sbjct: 13 DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKN 53
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 68.6 bits (168), Expect = 5e-15
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 4 IAKHDF-------NATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
IA D+ + L+ R V+ + DD +Y EL G GL+P++ ++
Sbjct: 11 IAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68
Score = 65.9 bits (161), Expect = 5e-14
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 32/89 (35%)
Query: 152 PEECLVQALYDFTPQEP-------GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPAT 204
++ A D+ P + G L R GDV+ V
Sbjct: 5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMV----------------------- 41
Query: 205 YILNMEDDMNWYRAELDGKEGLIPSNYIE 233
DD +Y EL G GL+P++ ++
Sbjct: 42 --YGPMDDQGFYYGELGGHRGLVPAHLLD 68
Score = 25.8 bits (57), Expect = 5.6
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 7/31 (22%)
Query: 331 PEECLVQALYDFTPQEP-------GELEFRR 354
++ A D+ P + G L R
Sbjct: 5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRA 35
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 69.0 bits (168), Expect = 9e-15
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITV-----TDRSDQHWWHGEIGARKGLFPATYILNMED 211
VQA +D+T + EL+ + GDV+ V + D+ W G +++
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG----------------VKE 90
Query: 212 DMNWYRAELDGKEGLIPSNYIE 233
EL+ G+ P N+ E
Sbjct: 91 SDWNQHKELEKCRGVFPENFTE 112
Score = 50.5 bits (120), Expect = 3e-08
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 14/66 (21%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYR----------AELDGKEGLI 48
A+HD+ AT DEL + V+ ++ ++ D W EL+ G+
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 106
Query: 49 PSNYIE 54
P N+ E
Sbjct: 107 PENFTE 112
Score = 35.8 bits (82), Expect = 0.004
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 336 VQALYDFTPQEPGELEFRR 354
VQA +D+T + EL+ +
Sbjct: 47 VQAQHDYTATDTDELQLKA 65
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 67.8 bits (166), Expect = 9e-15
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 23/79 (29%)
Query: 157 VQALYDFTPQEPG-ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+ALYDF P+ P E+ ++GD++ + + D + D +W
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSDW 55
Query: 216 YRAEL-DGKEGLIPSNYIE 233
++ +G G IP NYIE
Sbjct: 56 WKVRTKNGNIGYIPYNYIE 74
Score = 59.7 bits (145), Expect = 7e-12
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 3 AIAKHDFNA-TAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIE 54
A A +DF E E++ +K ++ IL+ +D D +W++ +G G IP NYIE
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74
Score = 33.5 bits (77), Expect = 0.015
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 336 VQALYDFTPQEPG-ELEFRRD 355
+ALYDF P+ P E+ ++
Sbjct: 17 ARALYDFVPENPEMEVALKKG 37
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 67.9 bits (166), Expect = 9e-15
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 25/82 (30%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+ + L D+ + FRRG+ + V WW
Sbjct: 15 LDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEG-GWWKA------------------- 54
Query: 212 DMNWYRAELDGKEGLIPSNYIE 233
+ G+E IP +
Sbjct: 55 -----ISLSTGRESYIPGICVA 71
Score = 64.0 bits (156), Expect = 2e-13
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
D+ + FR+ + L++++ E W++A G+E IP +
Sbjct: 20 LAVLSDYPSPDISPPIFRRGEKLRVISDEGG--WWKAISLSTGRESYIPGICVA 71
Score = 37.8 bits (88), Expect = 4e-04
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
+ + L D+ + FRR K++
Sbjct: 15 LDSDFLAVLSDYPSPDISPPIFRRGEKLR 43
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 67.9 bits (166), Expect = 1e-14
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 23/79 (29%)
Query: 157 VQALYDFTPQEP-GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+ALYDF P+ P E+ ++GD++ + + D + D +W
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSDW 55
Query: 216 YRAEL-DGKEGLIPSNYIE 233
++ +G G IP NYIE
Sbjct: 56 WKVRTKNGNIGYIPYNYIE 74
Score = 59.5 bits (144), Expect = 1e-11
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 3 AIAKHDFNA-TAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIE 54
A A +DF E E++ +K ++ IL+ +D D +W++ +G G IP NYIE
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74
Score = 33.6 bits (77), Expect = 0.017
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 336 VQALYDFTPQEP-GELEFRRD 355
+ALYDF P+ P E+ ++
Sbjct: 17 ARALYDFVPENPEMEVALKKG 37
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 68.6 bits (167), Expect = 2e-14
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYI 206
+E A+Y+F +L + GDV+ + + W+ G + +G+FP ++I
Sbjct: 57 DKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFI 113
Score = 60.9 bits (147), Expect = 8e-12
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMK 56
+A ++F + +LS + V++I E +WYR L +G+ P ++I +K
Sbjct: 62 GVAIYNFQGSGAPQLSLQIGDVVRIQ--ETCGDWYRGYLIKHKMLQGIFPKSFIHIK 116
Score = 34.7 bits (79), Expect = 0.012
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 331 PEECLVQALYDFTPQEPGELEFR 353
+E A+Y+F +L +
Sbjct: 57 DKERHGVAIYNFQGSGAPQLSLQ 79
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 67.0 bits (164), Expect = 2e-14
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 26/84 (30%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIGARKGLFPATYILNME 210
+ +Y + +P EL +V+ V + D + W
Sbjct: 11 NYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKAR----------------- 53
Query: 211 DDMNWYRAELDGKEGLIPSNYIEM 234
G+ G +P Y++
Sbjct: 54 --------NKVGQVGYVPEKYLQF 69
Score = 66.2 bits (162), Expect = 4e-14
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM 55
+ + + A+ DEL+ + +VL+++ D +W +A G+ G +P Y++
Sbjct: 14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQF 69
Score = 35.0 bits (81), Expect = 0.004
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
+ +Y + +P EL
Sbjct: 11 NYPLTCKVVYSYKASQPDELTIEEH 35
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 66.6 bits (163), Expect = 2e-14
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 153 EECLVQALYDFTPQ-EPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM 209
++ +A YDF EL ++GD++ ++ W ++ G+++G P Y+
Sbjct: 1 KDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY 60
Query: 210 EDDMN 214
+D N
Sbjct: 61 KDTRN 65
Score = 56.9 bits (138), Expect = 6e-11
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 3 AIAKHDFNAT-AEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
A +DF + + EL +K ++ I E W A+L KEG +P+ Y+
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPS-GWSLAKLLDGSKEGWVPTAYMT 58
Score = 28.0 bits (63), Expect = 1.0
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 332 EECLVQALYDFTPQ-EPGELEFRRD 355
++ +A YDF EL ++
Sbjct: 1 KDPKFEAAYDFPGSGSSSELPLKKG 25
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 66.6 bits (163), Expect = 2e-14
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 3 AIAKHDFNAT-------AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
+A +D++ E EL+F ++ + D+ +Y EL+G++GL+PSN++E
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68
Score = 66.3 bits (162), Expect = 4e-14
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 32/84 (38%)
Query: 157 VQALYDFTPQEP-------GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
+ ALYD+ P+E EL F GD+ITV D+ +
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGF------------------- 50
Query: 210 EDDMNWYRAELDGKEGLIPSNYIE 233
Y EL+G++GL+PSN++E
Sbjct: 51 ------YYGELNGQKGLVPSNFLE 68
Score = 27.3 bits (61), Expect = 2.2
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 336 VQALYDFTPQEP-------GELEFRRD 355
+ ALYD+ P+E EL F
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTG 36
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 66.0 bits (161), Expect = 2e-14
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+ + + EL G +TV + WW G + G FP+ Y+L D
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEVD 58
Score = 64.8 bits (158), Expect = 6e-14
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
+ A + A EDELS + ++ D W+R +G+ G PSNY+
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSD-GWWRGSYNGQIGWFPSNYVLE 55
Score = 29.4 bits (66), Expect = 0.22
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 338 ALYDFTPQEPGELEFRRDLKIK 359
+ + + EL ++
Sbjct: 6 VXFAYVAEREDELSLVXGSRVT 27
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 71.6 bits (174), Expect = 4e-14
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
+AL+DFT EL F+ GDVI + R ++ W G + G+FP +++
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 226
Score = 57.7 bits (138), Expect = 2e-09
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
A A DF ++ EL+F+ V+ +L+ + +W + G G+ P +++++
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINK-DWLEGTVRGATGIFPLSFVKI 228
Score = 30.0 bits (66), Expect = 1.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
+AL+DFT EL F+ I
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVI 199
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 65.0 bits (159), Expect = 7e-14
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 157 VQALYDFTPQE-PGELEFRRGDVITVTDRSDQH-WWHGEI--GARKGLFPATYILNMED 211
V+ ++ T L F +GDVIT+ ++ W +GE +G FP++Y +E+
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEE 67
Score = 50.0 bits (120), Expect = 1e-08
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 5 AKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
A + + LSF + V+ +L E+ W E G PS+Y +
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63
Score = 27.3 bits (61), Expect = 1.5
Identities = 4/20 (20%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 336 VQALYDFTPQE-PGELEFRR 354
V+ ++ T L F +
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQ 28
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 65.0 bits (159), Expect = 8e-14
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
+A++ F P+ ELE D + V +++ +W+ +G+FPA Y
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60
Score = 54.2 bits (131), Expect = 5e-10
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
A F EDEL L + +D WY A G G+ P+ Y
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQAED-YWYEAYNMRTGARGVFPAYYAI 61
Score = 32.6 bits (75), Expect = 0.023
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+A++ F P+ ELE D
Sbjct: 9 HRAIFRFVPRHEDELELEVD 28
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 64.1 bits (157), Expect = 1e-13
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
+A++ F P+ ELE D + V +++ +W+ +G+FPA Y
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 57
Score = 52.2 bits (126), Expect = 2e-09
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
A F EDEL L + +D WY A G G+ P+ Y
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAED-YWYEAYNMRTGARGVFPAYYAI 58
Score = 31.4 bits (72), Expect = 0.057
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
+A++ F P+ ELE D
Sbjct: 6 HRAIFRFVPRHEDELELEVD 25
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 64.7 bits (158), Expect = 1e-13
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 157 VQALYDFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKGLFPATYILNMEDDM 213
+ALY + + E+ F + +++ V+D + WW G+ P+ Y+ ++
Sbjct: 8 AKALYPYDADDDDAYEISFEQNEILQVSDIEGR-WWKARRANGETGIIPSNYVQLIDGPE 66
Query: 214 NWYR 217
+R
Sbjct: 67 EMHR 70
Score = 58.1 bits (141), Expect = 2e-11
Identities = 18/56 (32%), Positives = 39/56 (69%), Gaps = 5/56 (8%)
Query: 3 AIAKHDFNATAED--ELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM 55
A A + ++A +D E+SF ++++L++ ++E W++A +G+ G+IPSNY+++
Sbjct: 8 AKALYPYDADDDDAYEISFEQNEILQVSDIEGR--WWKARRANGETGIIPSNYVQL 61
Score = 28.1 bits (63), Expect = 0.98
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 336 VQALYDFTPQ--EPGELEFRRD 355
+ALY + + E+ F ++
Sbjct: 8 AKALYPYDADDDDAYEISFEQN 29
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 64.3 bits (157), Expect = 2e-13
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 157 VQALYDFTPQ-EPGELEFRRGDVITVTDRS-DQHWWHGEIGA-RKGLFPATYI 206
+ +YDF + EL G++ITVT+ + W G+ +GL P Y+
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64
Score = 62.0 bits (151), Expect = 1e-12
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 3 AIAKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 55
A +DF A +EL+ + +++ + N W + G++GL+P++Y+E+
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEI 66
Score = 28.1 bits (63), Expect = 1.3
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 336 VQALYDFTPQ-EPGELEFR 353
+ +YDF + EL
Sbjct: 12 ARVMYDFAAEPGNNELTVT 30
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 64.8 bits (158), Expect = 2e-13
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 29/91 (31%)
Query: 148 RDMVPEEC-LVQALYDFTPQEPGELEFRRGDVITVT----DRSDQHWWHGEIGARKGLFP 202
RD+ +Q +Y +TPQ ELE GD I ++ + + W +G
Sbjct: 9 RDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYG---------- 58
Query: 203 ATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
+ G GL+P NYI
Sbjct: 59 --------------TSLTTGCSGLLPENYIT 75
Score = 48.6 bits (116), Expect = 1e-07
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMED---DMNWY--RAELDGKEGLIPSNYIE 54
+ + +DEL + + ME W + G GL+P NYI
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT 75
Score = 35.6 bits (82), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 327 RDMVPEEC-LVQALYDFTPQEPGELEFRRD 355
RD+ +Q +Y +TPQ ELE
Sbjct: 9 RDIRFANHETLQVIYPYTPQNDDELELVPG 38
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 63.9 bits (156), Expect = 2e-13
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 157 VQALYDFTPQE-PGELEFRRGDVITVTDRSDQH-WWHGEIGA--RKGLFPATY 205
V+ ++ T L F +GDV+T+ ++ W +GE +G FP++Y
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSY 62
Score = 52.0 bits (125), Expect = 3e-09
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 3 AIAKHDFNATA-EDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
A + LSF + VL +L E+ W E G PS+Y +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64
Score = 27.7 bits (62), Expect = 1.5
Identities = 4/20 (20%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 336 VQALYDFTPQE-PGELEFRR 354
V+ ++ T L F +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQ 29
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 63.9 bits (156), Expect = 2e-13
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 157 VQALYDFTPQE-PGELEFRRGDVITV-TDRSDQHWWHGEIGA--RKGLFPATY 205
V+A++ + L F+ GD+IT+ + W +GE +G FP +Y
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSY 62
Score = 51.2 bits (123), Expect = 6e-09
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 5 AKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEM 55
A A LSF++ ++ +L E W+ E + G P +Y +
Sbjct: 12 AIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
Score = 27.7 bits (62), Expect = 1.2
Identities = 4/19 (21%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 336 VQALYDFTPQE-PGELEFR 353
V+A++ + L F+
Sbjct: 10 VKAIFSHAAGDNSTLLSFK 28
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 63.3 bits (155), Expect = 2e-13
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW---HGEIGARKGLFPATYI 206
+ LY + ++ E+ GD I++ R W + + GL P TYI
Sbjct: 4 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
Score = 60.6 bits (148), Expect = 2e-12
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYIEM 55
ME + + +DE++ + ++ + W + G+ GL+P+ YI +
Sbjct: 2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
Score = 29.4 bits (67), Expect = 0.23
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 336 VQALYDFTPQEPGELEFR 353
+ LY + ++ E+
Sbjct: 4 NKVLYAYVQKDDDEITIT 21
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 63.5 bits (155), Expect = 2e-13
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 25/78 (32%)
Query: 157 VQALYDFT-PQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
V+A+ +T + E+ F +GD+ V + + W W
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWM------------------------W 45
Query: 216 YRAELDGKEGLIPSNYIE 233
++GLI + +E
Sbjct: 46 VTNLRTDEQGLIVEDLVE 63
Score = 50.4 bits (121), Expect = 1e-08
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 3 AIAKHDFNATA-EDELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYIE 54
A + DE+SF K + + N +D W ++GLI + +E
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELED-GWMWVTNLRTDEQGLIVEDLVE 63
Score = 27.3 bits (61), Expect = 1.9
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 336 VQALYDFT-PQEPGELEFRR 354
V+A+ +T + E+ F +
Sbjct: 10 VRAILPYTKVPDTDEISFLK 29
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 62.7 bits (153), Expect = 4e-13
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 26/82 (31%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
++ YDF + EL + DV+ + D Q WW
Sbjct: 3 YAKSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVR---------------------- 39
Query: 216 YRAELDGKEGLIPSNYIEMKNH 237
G G +P+N +++
Sbjct: 40 ---NASGDSGFVPNNILDIMRT 58
Score = 61.1 bits (149), Expect = 1e-12
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNH 58
A +K+DF A ELS K VL+IL+ W++ G G +P+N +++
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEILDDRRQ--WWKVRNASGDSGFVPNNILDIMRT 58
Score = 34.5 bits (80), Expect = 0.004
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 335 LVQALYDFTPQEPGELEFRRD 355
++ YDF + EL +D
Sbjct: 3 YAKSKYDFVARNSSELSVMKD 23
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 63.4 bits (154), Expect = 6e-13
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 4 IAKHDF------NATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE 54
+A++ + N E EL + L + D+ +Y E LDG+ GL+PSN+++
Sbjct: 21 VARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78
Score = 63.0 bits (153), Expect = 7e-13
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 30/88 (34%)
Query: 152 PEECLVQALYDFTPQE------PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
+ L A Y + P + EL G + V D+ +
Sbjct: 15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGF--------------- 59
Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYIE 233
+ LDG+ GL+PSN+++
Sbjct: 60 ---------YEGELLDGQRGLVPSNFVD 78
Score = 26.4 bits (58), Expect = 5.6
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 6/29 (20%)
Query: 331 PEECLVQALYDFTPQE------PGELEFR 353
+ L A Y + P + EL
Sbjct: 15 GKVHLCVARYSYNPFDGPNENPEAELPLT 43
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 63.1 bits (153), Expect = 7e-13
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
PE +ALY F + P +LE GDV+ V+ + Q E G R
Sbjct: 9 PEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERC-----------PQ 57
Query: 212 DMNWY--RAELDGKEGLIPSNYIEM 234
+ W E + G P Y+E
Sbjct: 58 SVGWMPGLNERTRQRGDFPGTYVEF 82
Score = 40.7 bits (95), Expect = 4e-05
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 16/71 (22%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILN--------------MEDDMNWY--RAELDGK 44
+ A + F ++L VL + + W E +
Sbjct: 12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 71
Query: 45 EGLIPSNYIEM 55
G P Y+E
Sbjct: 72 RGDFPGTYVEF 82
Score = 33.4 bits (76), Expect = 0.020
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 331 PEECLVQALYDFTPQEPGELEFR 353
PE +ALY F + P +LE
Sbjct: 9 PEGFQYRALYPFRRERPEDLELL 31
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 63.1 bits (153), Expect = 7e-13
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSD----QHWWHGEIG 195
S S L P E L QA +F + ++ GD++ V + D Q+ W + G
Sbjct: 3 SGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG 62
Query: 196 ARKGLFPATYI 206
KG ++++
Sbjct: 63 VTKGFVYSSFL 73
Score = 48.8 bits (116), Expect = 7e-08
Identities = 10/54 (18%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDM---NWYRAELDGKEGLIPSNYIE 54
A+ +FNA + ++S + ++ ++ +D M N + + +G + S++++
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLK 74
Score = 34.2 bits (78), Expect = 0.009
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 319 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRR 354
S S L P E L QA +F + ++
Sbjct: 3 SGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLE 38
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 68.1 bits (166), Expect = 1e-12
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 134 HRTASVSRSQDVKLRDMV--PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH 191
H + + + + +++ +AL+D + EL F+ GDVI V D +++ WW
Sbjct: 8 HYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWW 67
Query: 192 GEIGARKGLFPATYILNMEDDMNWYRAE 219
G + +G FPA+++ + +
Sbjct: 68 GRVADGEGWFPASFVRLRVNQDEPADDD 95
Score = 48.0 bits (114), Expect = 3e-06
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH 58
A A D + EL F+ V+++++ + W+ + EG P++++ ++ +
Sbjct: 33 AEALWDHVTMDDQELGFKAGDVIEVMDATNR-EWWWGRVADGEGWFPASFVRLRVN 87
Score = 29.2 bits (65), Expect = 2.5
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 313 HRTASVSRSQDVKLRDMV--PEECLVQALYDFTPQEPGELEFRR 354
H + + + + +++ +AL+D + EL F+
Sbjct: 8 HYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKA 51
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 61.7 bits (150), Expect = 1e-12
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 23/85 (27%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
+ + ++ D+ E F+ G + V +R+ WW+ +I
Sbjct: 8 NLKDVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQI----------------- 49
Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
+ +G +PSNY+E KN
Sbjct: 50 -----LDGVKPFKGWVPSNYLEKKN 69
Score = 52.1 bits (125), Expect = 3e-09
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL----DGKEGLIPSNYIEMKN 57
++ D+ E+ F++ +++L + W+ ++ +G +PSNY+E KN
Sbjct: 14 VSIADYEGD-EETAGFQEGVSMEVLERNPN-GWWYCQILDGVKPFKGWVPSNYLEKKN 69
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 62.1 bits (150), Expect = 3e-12
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 43 GKEGLIPSNYIEMKNHD--WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVK 99
G G + + + + + +++R +A+ LL G L+R S S++ +
Sbjct: 4 GSSGEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTR 63
Query: 100 ----CSDGVQHFKVLRDSSGKFFLWV---VKFNSLNELVEYHRTAS 138
+ V+H+KV R+ K+ + V SL+ +V Y + +
Sbjct: 64 QMHNGTHVVRHYKVKRE-GPKYVIDVEQPFSCTSLDAVVNYFVSHT 108
Score = 62.1 bits (150), Expect = 3e-12
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 222 GKEGLIPSNYIEMKNHD--WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVK 278
G G + + + + + +++R +A+ LL G L+R S S++ +
Sbjct: 4 GSSGEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTR 63
Query: 279 ----CSDGVQHFKVLRDSSGKFFLWV---VKFNSLNELVEYHRTAS 317
+ V+H+KV R+ K+ + V SL+ +V Y + +
Sbjct: 64 QMHNGTHVVRHYKVKRE-GPKYVIDVEQPFSCTSLDAVVNYFVSHT 108
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 60.9 bits (147), Expect = 8e-12
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 59 DWYYGRITRADAERLL------SNKHEGAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLR 111
+ + ERL +G + IR S + G + + V+++++
Sbjct: 18 SVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFE 77
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR 148
S + V F S+ +VE++ T + Q + LR
Sbjct: 78 KDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLR 114
Score = 60.9 bits (147), Expect = 8e-12
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 238 DWYYGRITRADAERLL------SNKHEGAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLR 290
+ + ERL +G + IR S + G + + V+++++
Sbjct: 18 SVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFE 77
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR 327
S + V F S+ +VE++ T + Q + LR
Sbjct: 78 KDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLR 114
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 62.8 bits (151), Expect = 1e-11
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 126 SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVT--- 182
+ S +L VQA +D+T + EL+ + GDV+ V
Sbjct: 114 VVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQ 173
Query: 183 --DRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
+ D+ W G E D N ++ +L+ G+ P N+ E
Sbjct: 174 NPEEQDEGWLMGVK---------------ESDWNQHK-KLEKCRGVFPENFTE 210
Score = 45.5 bits (106), Expect = 8e-06
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 14/66 (21%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYR----------AELDGKEGLI 48
A+HD+ AT DEL + V+ ++ ++ D W +L+ G+
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVF 204
Query: 49 PSNYIE 54
P N+ E
Sbjct: 205 PENFTE 210
Score = 32.4 bits (72), Expect = 0.17
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 305 SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
+ S +L VQA +D+T + EL+ +
Sbjct: 114 VVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAG 164
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 62.1 bits (151), Expect = 4e-11
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
C V +YD+T Q EL F +G +I V ++ D WW GE+ + GLFP+ Y+ D
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP 62
Query: 215 W 215
Sbjct: 63 S 63
Score = 51.3 bits (123), Expect = 1e-07
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
+ I +D+ A +DEL+F K Q++ +LN ED +W++ E+ G+ GL PSNY+++
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDP-DWWKGEVSGQVGLFPSNYVKLTTDM 60
Score = 27.0 bits (60), Expect = 8.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 334 CLVQALYDFTPQEPGELEFR 353
C V +YD+T Q EL F
Sbjct: 3 CQVIGMYDYTAQNDDELAFS 22
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 58.1 bits (140), Expect = 5e-11
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVT---DRSDQHWWHGEIG--------ARKGLFPA 203
+ AL D+ + L RG V+ V + +W G + AR G FP+
Sbjct: 23 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 82
Query: 204 TYI 206
+ +
Sbjct: 83 SIV 85
Score = 43.1 bits (101), Expect = 1e-05
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDG--------KEGLIPSNY 52
A+A D+ A L+ + QV+ + + ++ + G + G PS+
Sbjct: 25 AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSI 84
Query: 53 IE 54
+
Sbjct: 85 VR 86
Score = 31.5 bits (71), Expect = 0.10
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 334 CLVQALYDFTPQEPGELEFRRDLKIK 359
+ AL D+ + L R +
Sbjct: 23 SMAVALQDYMAPDCRFLTIHRGQVVY 48
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 55.9 bits (135), Expect = 1e-10
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 25/78 (32%)
Query: 157 VQALYDFTP-QEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
V+A+ +T + E+ F +GD+ V + + W W
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWM------------------------W 43
Query: 216 YRAELDGKEGLIPSNYIE 233
++GLI + +E
Sbjct: 44 VTNLRTDEQGLIVEDLVE 61
Score = 47.4 bits (113), Expect = 1e-07
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 5 AKHDFNATAE-DELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYIE 54
A + + DE+SF K + + N +D W ++GLI + +E
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELED-GWMWVTNLRTDEQGLIVEDLVE 61
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 58.2 bits (140), Expect = 2e-10
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYIL 207
+E A+Y+F +L + GDV+ + + W+ G + +G+FP ++I
Sbjct: 14 ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 72
Query: 208 NMEDDMN 214
E +
Sbjct: 73 IKEVTVE 79
Score = 48.5 bits (115), Expect = 5e-07
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMK 56
+A ++F + +LS + V++I E +WYR L +G+ P ++I +K
Sbjct: 20 GVAIYNFQGSGAPQLSLQIGDVVRIQ--ETCGDWYRGYLIKHKMLQGIFPKSFIHIK 74
Score = 32.0 bits (72), Expect = 0.20
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 330 VPEECLVQALYDFTPQEPGELEFR 353
+E A+Y+F +L +
Sbjct: 14 ADKERHGVAIYNFQGSGAPQLSLQ 37
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 59.9 bits (145), Expect = 4e-10
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 61 YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
++G I+R A++LL EG++LIR S+ PG ++L+++ ++F++ D GK F+
Sbjct: 54 FHGMISREAADQLLI-VAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYD--GKHFVG 110
Query: 121 VVKFNSLNELV 131
+F S+++LV
Sbjct: 111 EKRFESIHDLV 121
Score = 59.9 bits (145), Expect = 4e-10
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 240 YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 299
++G I+R A++LL EG++LIR S+ PG ++L+++ ++F++ D GK F+
Sbjct: 54 FHGMISREAADQLLI-VAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYD--GKHFVG 110
Query: 300 VVKFNSLNELV 310
+F S+++LV
Sbjct: 111 EKRFESIHDLV 121
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 59.0 bits (141), Expect = 8e-10
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 133 YHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWH 191
+ T + S E V+ALYD+ QE EL F+ GD +T + D Q W
Sbjct: 407 FSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCK 466
Query: 192 GEIGA-RKGLFPATYI 206
G + + GL+PA Y+
Sbjct: 467 GRLDNGQVGLYPANYV 482
Score = 58.2 bits (139), Expect = 1e-09
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE 54
A +D+ DELSF+ L + ED+ W + L +G+ GL P+NY+E
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVE 483
Score = 29.0 bits (63), Expect = 2.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 312 YHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFR 353
+ T + S E V+ALYD+ QE EL F+
Sbjct: 407 FSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFK 448
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 50.5 bits (120), Expect = 2e-08
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
M E +ALYD+ + +++ GD++TV S + +
Sbjct: 1 MSAEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAR----------- 49
Query: 210 EDDMNWY--RAELDGKEGLIPSNYIE 233
+++ W E G+ G P Y+E
Sbjct: 50 PEEIGWLNGYNETTGERGDFPGTYVE 75
Score = 30.4 bits (68), Expect = 0.18
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 16/66 (24%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNME--------------DDMNWY--RAELDGKEGLI 48
A +D+ E+++ +L + +++ W E G+ G
Sbjct: 10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69
Query: 49 PSNYIE 54
P Y+E
Sbjct: 70 PGTYVE 75
Score = 27.7 bits (61), Expect = 1.9
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 329 MVPEECLVQALYDFTPQEPGELEFR 353
M E +ALYD+ + +++
Sbjct: 1 MSAEGYQYRALYDYKKEREEDIDLH 25
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus
norvegicus}
Length = 82
Score = 50.0 bits (119), Expect = 2e-08
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 4 IAKHDFNATAEDELSFRKSQVLKIL-NMEDDMNWYRAEL----DGKEGLIPSNYIEMKN 57
+ DF+A ELS + Q +++L + W +EGL+PS+ + + +
Sbjct: 21 VVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCISH 79
Score = 40.0 bits (93), Expect = 7e-05
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 24/83 (28%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNMEDDM 213
L L DF+ EL + G + + +R W R
Sbjct: 19 LTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERS--------------- 63
Query: 214 NWYRAELDGKEGLIPSNYIEMKN 236
+EGL+PS+ + + +
Sbjct: 64 -------PPQEGLVPSSTLCISH 79
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 48.8 bits (116), Expect = 5e-08
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTD-RSDQHWWHGEIG 195
A + ++ L M + + G L GD++ +T ++ +WW G
Sbjct: 2 AQDKKRNELGLPKMEVFQEYY-GIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNT 60
Query: 196 A--RKGLFPATYI 206
A G FP +
Sbjct: 61 ATNEVGWFPCNRV 73
Score = 36.5 bits (84), Expect = 0.001
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 14 EDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKNH 58
L ++++ E + NW+ + G P N + H
Sbjct: 32 GGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYVH 78
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 50.7 bits (121), Expect = 1e-07
Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 57 NHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV-QHFKVLRDSSG 115
NH +Y+ AE L +K G F+IR S +++ K + QH +
Sbjct: 7 NHPYYF-PFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKE 65
Query: 116 KFF-----LWV--VKFNSLNELVEYHRTASVSRSQDV----KLRDMVPEECLVQALYDFT 164
L V +++ L++++ + + ++ K + +E +V+ + D++
Sbjct: 66 NPLALGKVLVVEGQRYHDLDQIIVEYLQNKIRLLNELTSNEKFKAGTKKE-VVKFIEDYS 124
Query: 165 PQEPG 169
P
Sbjct: 125 KVNPK 129
Score = 50.7 bits (121), Expect = 1e-07
Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 236 NHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV-QHFKVLRDSSG 294
NH +Y+ AE L +K G F+IR S +++ K + QH +
Sbjct: 7 NHPYYF-PFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKE 65
Query: 295 KFF-----LWV--VKFNSLNELVEYHRTASVSRSQDV----KLRDMVPEECLVQALYDFT 343
L V +++ L++++ + + ++ K + +E +V+ + D++
Sbjct: 66 NPLALGKVLVVEGQRYHDLDQIIVEYLQNKIRLLNELTSNEKFKAGTKKE-VVKFIEDYS 124
Query: 344 PQEPG 348
P
Sbjct: 125 KVNPK 129
Score = 36.8 bits (85), Expect = 0.005
Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 48 IPSNYIEMKNHDWYYGRITRADAERLLS-----NKHEGAFLIRVSESSPGDFSLSVKCSD 102
E+ +++ + T+ + + + N + + ++ +PG F L K +
Sbjct: 95 KIRLLNELTSNE-KFKAGTKKEVVKFIEDYSKVNPKKSVYYFSLNYENPGWFYLIFKLNA 153
Query: 103 G--VQHFKVLRDSSGKFFLWVVKFNSLNELVEY 133
+ + V +G FFL + ++ +L
Sbjct: 154 ESKLYIWNVKLTHTG-FFLVNYNYPTVIQLCNG 185
Score = 36.8 bits (85), Expect = 0.005
Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLS-----NKHEGAFLIRVSESSPGDFSLSVKCSD 281
E+ +++ + T+ + + + N + + ++ +PG F L K +
Sbjct: 95 KIRLLNELTSNE-KFKAGTKKEVVKFIEDYSKVNPKKSVYYFSLNYENPGWFYLIFKLNA 153
Query: 282 G--VQHFKVLRDSSGKFFLWVVKFNSLNELVEY 312
+ + V +G FFL + ++ +L
Sbjct: 154 ESKLYIWNVKLTHTG-FFLVNYNYPTVIQLCNG 185
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 50.6 bits (120), Expect = 3e-07
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 23/136 (16%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
++ ++ P P L F RGDV V D +
Sbjct: 7 IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQS-----------------HARGGHW 49
Query: 217 RAELDGKE------GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSP 270
A G++ G+IP+ + + + + A R+
Sbjct: 50 LAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRR 109
Query: 271 GDFSLSVKCSDGVQHF 286
G + + + +
Sbjct: 110 GAKKTTQRSREDLSAL 125
Score = 37.9 bits (87), Expect = 0.004
Identities = 12/117 (10%), Positives = 31/117 (26%), Gaps = 14/117 (11%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMED--------DMNWYRAELDGKE------GLIPS 50
+ + L F + V +L+ + A G++ G+IP+
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68
Query: 51 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
+ + + + A R+ G + + + +
Sbjct: 69 QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSAL 125
Score = 27.9 bits (61), Expect = 6.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 336 VQALYDFTPQEPGELEFRRD 355
++ ++ P P L F R
Sbjct: 7 IRTHFELEPSPPSGLGFTRG 26
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 50.7 bits (120), Expect = 4e-07
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD---GVQHFKVLR 111
+ YG + R + L N+ G F+IR SE +PG F ++ + ++H+ V
Sbjct: 348 LWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQP 407
Query: 112 DSSG 115
+ +
Sbjct: 408 NDTA 411
Score = 50.7 bits (120), Expect = 4e-07
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD---GVQHFKVLR 290
+ YG + R + L N+ G F+IR SE +PG F ++ + ++H+ V
Sbjct: 348 LWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQP 407
Query: 291 DSSG 294
+ +
Sbjct: 408 NDTA 411
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 45.3 bits (107), Expect = 8e-07
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 161 YDFTPQEPG----ELEFRRGDVITVTDRS-DQHWWHGEIGA--RKGLFPATYI 206
Y P PG L GD++ +T + +WW G A G FP +
Sbjct: 13 YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65
Score = 36.9 bits (85), Expect = 7e-04
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 1 MEAIAKHDFNATAE----DELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
ME ++ L ++++ E + NW+ + G P N +
Sbjct: 7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
Query: 55 MKNH 58
H
Sbjct: 67 PYVH 70
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 46.4 bits (110), Expect = 3e-06
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 48 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEG--AFLIRVSESSPGDFSLSVKCSDGVQ 105
I N +K H Y+ + DAE+LLS+ + S PG + + ++
Sbjct: 91 ILRNLKSIKAHAKYFN--SPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYNNGSILE 148
Query: 106 HFKVLRDSSGKFFLWVVKFNSLNELVEY 133
+ + D F ++ V Y
Sbjct: 149 EYIGVSDM---LTYNNSTFKDIDSFVAY 173
Score = 46.4 bits (110), Expect = 3e-06
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEG--AFLIRVSESSPGDFSLSVKCSDGVQ 284
I N +K H Y+ + DAE+LLS+ + S PG + + ++
Sbjct: 91 ILRNLKSIKAHAKYFN--SPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYNNGSILE 148
Query: 285 HFKVLRDSSGKFFLWVVKFNSLNELVEY 312
+ + D F ++ V Y
Sbjct: 149 EYIGVSDM---LTYNNSTFKDIDSFVAY 173
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 46.0 bits (108), Expect = 2e-05
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 36 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFS 95
W+ ++ ++ ++ N G + + A LL NK +G FL+R S+S G +
Sbjct: 446 WFDGVME----VLKKHHKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGIT 501
Query: 96 LSVKCSDGVQHFK 108
++ K ++
Sbjct: 502 IAWKFDSPDRNLW 514
Score = 46.0 bits (108), Expect = 2e-05
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 215 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFS 274
W+ ++ ++ ++ N G + + A LL NK +G FL+R S+S G +
Sbjct: 446 WFDGVME----VLKKHHKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGIT 501
Query: 275 LSVKCSDGVQHFK 287
++ K ++
Sbjct: 502 IAWKFDSPDRNLW 514
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 44.1 bits (103), Expect = 5e-05
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 127 LNELVEYHRTASVSRSQDVKLRDMVPEECL--VQALYDFTPQEPGELEFRRGDVITVTDR 184
E+++ + + + + A+Y P+ E+ GD+I V
Sbjct: 413 AYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGN 472
Query: 185 SDQHWWHGEI--GARKGLFPATY 205
+ G R GL+P+
Sbjct: 473 HWDGYSKGVNRKLGRTGLYPSYK 495
Score = 34.1 bits (77), Expect = 0.078
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKNH 58
IA + DE+ ++ + D + + G+ GL PS + K
Sbjct: 443 HNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWD-GYSKGVNRKLGRTGLYPSYKVREKIE 501
Query: 59 DWYYGRITRADAERLLSNKHE 79
Y A+ + H
Sbjct: 502 TVKYPTYPEAEKAGGGHHHHH 522
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 62/402 (15%), Positives = 119/402 (29%), Gaps = 145/402 (36%)
Query: 8 DFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITR 67
DF T E + ++ +L + ED + D K ++ D +++
Sbjct: 8 DFE-TGEHQYQYKD--ILSVF--EDA---FVDNFDCK-------DVQ----DMPKSILSK 48
Query: 68 ADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF-----------------KVL 110
+ + ++ +K + +R+ + L K + VQ F
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWT------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDV-KLRDMVPEECLVQALYDFTPQEPG 169
R S +++ + + L + +VSR Q KLR QAL
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---------QALL-------- 145
Query: 170 ELEFRRGDVITVTDRSDQHWWHGEIGARK------GLFPATYILNMEDDMNW-------- 215
E R + + G +G+ K M+ + W
Sbjct: 146 --ELRPAKNVLI---------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 216 ------------YRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFL 262
Y+ + + S+ I+++ H +A+ RLL +K +E L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI------QAELRRLLKSKPYENCLL 248
Query: 263 I--RVSESSPGDFSLSVKCSDGVQHFKVL---RDSSGKFFLWVVKFNSLNELVEYHRTAS 317
+ V + + + ++ C K+L R V + L+ H +
Sbjct: 249 VLLNVQNAKAWN-AFNLSC-------KILLTTRFKQ------VT--DFLSAATTTHIS-- 290
Query: 318 VSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
L TP E L + L +
Sbjct: 291 -----------------LDHHSMTLTPDEVKSL-LLKYLDCR 314
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 42.5 bits (99), Expect = 2e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 36 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDF 94
W + L+ LI + + + N G I++ LL ++ G FL+R SESS G
Sbjct: 422 WIESILE----LIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAI 477
Query: 95 SLSVKCSDGVQHFK 108
+ +
Sbjct: 478 TFTWVERSQNGGEP 491
Score = 42.5 bits (99), Expect = 2e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 215 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDF 273
W + L+ LI + + + N G I++ LL ++ G FL+R SESS G
Sbjct: 422 WIESILE----LIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAI 477
Query: 274 SLSVKCSDGVQHFK 287
+ +
Sbjct: 478 TFTWVERSQNGGEP 491
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 41.7 bits (98), Expect = 2e-04
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 157 VQALYDFTPQE-----PGELEFRRGDVITVTDRSDQHWW 190
++AL+D+ + L FR GDV+ V D D+ WW
Sbjct: 4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWW 42
Score = 33.2 bits (76), Expect = 0.099
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 16 ELSFRKSQVLKILNMEDDMNWYRAELDG------KEGLIPSNYIEMK 56
LSFR VL +++ D+ W++A G IPS +
Sbjct: 22 ALSFRFGDVLHVIDAGDE-EWWQARRVHSDSETDDIGFIPSKRRVER 67
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 41.4 bits (96), Expect = 4e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 41 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVK 99
LD L+ + + N + G I++ +LS K G FL+R SESS G + +
Sbjct: 439 LDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWV 498
Query: 100 CSDGVQHFKVL 110
D ++
Sbjct: 499 EKDISGSTQIQ 509
Score = 41.4 bits (96), Expect = 4e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVK 278
LD L+ + + N + G I++ +LS K G FL+R SESS G + +
Sbjct: 439 LDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWV 498
Query: 279 CSDGVQHFKVL 289
D ++
Sbjct: 499 EKDISGSTQIQ 509
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 40.6 bits (94), Expect = 8e-04
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMN---WYRAELDGKEGLIPSNYIEMKN 57
+ + + A + ++ K + + W + L+ LI + + + N
Sbjct: 519 LNMLGEKLLGPNASPDGLIPWTRFCKENINDKNFPFWLWIESILE----LIKKHLLPLWN 574
Query: 58 HDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLR 111
G I++ LL ++ G FL+R SESS G + +
Sbjct: 575 DGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFH 629
Score = 40.3 bits (93), Expect = 9e-04
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVK 278
++ LI + + + N G I++ LL ++ G FL+R SESS G + +
Sbjct: 558 IESILELIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWV 617
Query: 279 CSDGVQHFKVLR 290
Sbjct: 618 ERSQNGGEPDFH 629
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 39.7 bits (93), Expect = 8e-04
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 157 VQALYDFTPQEPGE-----LEFRRGDVITVTDRSDQHWW 190
V+AL+D+ P L F+ GD++ VT+ SD WW
Sbjct: 8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWW 46
Score = 29.0 bits (65), Expect = 2.5
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 17 LSFRKSQVLKILNMEDDMNWYRA------ELDGKEGLIPSN 51
L F+ +L + N DD W++A D + G++PS
Sbjct: 27 LPFKHGDILHVTNASDD-EWWQARRVLGDNEDEQIGIVPSK 66
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 38.7 bits (89), Expect = 0.003
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 126 SLNELVEYHRTASVSRSQDVKLRDMVPE-ECLVQALYDFTPQEPGE-------LEFRRGD 177
SL E E R + ++Q + V+ ++ + + F D
Sbjct: 9 SLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKD 68
Query: 178 VITVTDRSDQHWW 190
+ V ++ + WW
Sbjct: 69 FLHVKEKFNNDWW 81
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 38.0 bits (87), Expect = 0.004
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 27/169 (15%)
Query: 72 RLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF--KVLRDSSGKFFLWVVKFNSLNE 129
RL G F+ V E SP ++ D + + + + + E
Sbjct: 16 RLAGGNDVGIFVAGVLEDSPAAKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE 74
Query: 130 LVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ-- 187
V + + V + ++ +++ + P L F +G+V V D
Sbjct: 75 EVTILAQKKKDVYRRIV-ESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGK 133
Query: 188 -HWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
W A + + + + + G+IP+ +
Sbjct: 134 LGSWL----AIR----------IGKNHK------EVERGIIPNKNRAEQ 162
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 37.5 bits (87), Expect = 0.008
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 65 ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV-QHFKVLRDSSGKFF----- 118
AE L +K G F+IR S ++ K + QH +
Sbjct: 1030 FNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKV 1089
Query: 119 LWV--VKFNSLNELVEYHRTASVSRSQDV 145
L V K+N L++++ + V ++
Sbjct: 1090 LIVDNQKYNDLDQIIVEYLQNKVRLLNEM 1118
Score = 37.5 bits (87), Expect = 0.008
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 244 ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV-QHFKVLRDSSGKFF----- 297
AE L +K G F+IR S ++ K + QH +
Sbjct: 1030 FNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKV 1089
Query: 298 LWV--VKFNSLNELVEYHRTASVSRSQDV 324
L V K+N L++++ + V ++
Sbjct: 1090 LIVDNQKYNDLDQIIVEYLQNKVRLLNEM 1118
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 36.7 bits (84), Expect = 0.009
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%)
Query: 72 RLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF--KVLRDSSGKFFLWVVKFNSLNE 129
RL G F+ V E SP ++ D + + + + + E
Sbjct: 24 RLAGGNDVGIFVAGVLEDSPAAKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE 82
Query: 130 LVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ-- 187
V + + V + ++ +++ + P L F +G+V V D
Sbjct: 83 EVTILAQKKKDVYRRIV-ESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGK 141
Query: 188 -HWWH 191
W
Sbjct: 142 LGSWL 146
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 34.5 bits (80), Expect = 0.033
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
AL+D+ PQ EL + GD +T+ R D ED++ W+ A
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHRED-----------------------EDEIEWWWA 211
Query: 219 ELDGKEGLIPSNYIEM 234
L+ KEG +P N + +
Sbjct: 212 RLNDKEGYVPRNLLGL 227
Score = 33.0 bits (76), Expect = 0.13
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 5 AKHDFNATAEDELSFRKSQVLKILNMEDD--MNWYRAELDGKEGLIPSNYIEM 55
A D+ +DEL ++ + I++ ED+ + W+ A L+ KEG +P N + +
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 34.7 bits (79), Expect = 0.035
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 128 NELVEYHRTASVSRSQDVKLRDMVPEECL--------VQALYDFTPQEPGELEFRRGDVI 179
+L EY S + + + P + A+ D+ E + +GD
Sbjct: 164 EQLNEYKGHLSGLAKRAKAVVQLKPRHPAHPMRGRLPLLAVCDYKQVE---VTVHKGDEC 220
Query: 180 TVTDRSDQHWW 190
+ + W
Sbjct: 221 QLVGPAQPSHW 231
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 30.8 bits (69), Expect = 0.20
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 1 MEAIAKHDFNATAEDELSFRKSQVLKILNMED--DMNWYRAELDGKEGLIPSNYIEMKN 57
A A D + LSF++ + ++I+ + D + W G G I + +E+
Sbjct: 29 HLAKACCDVKGGKNE-LSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEIDY 86
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 32.0 bits (73), Expect = 0.27
Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 283 VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYD 341
+ ++ + FN + +H D+ + + + ++ + +
Sbjct: 1 MGYYHHHHHHDYDIPTTENLYFNGMGYYHHHH-----HHDYDIPTTENLYFQGMLAGVSE 55
Query: 342 FTPQEPGELEF-RRDLKIKRR 361
+ E E R L + +
Sbjct: 56 YELPEDPRWELPRDRLVLGKP 76
Score = 30.4 bits (69), Expect = 1.00
Identities = 7/77 (9%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 104 VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYD 162
+ ++ + FN + +H D+ + + + ++ + +
Sbjct: 1 MGYYHHHHHHDYDIPTTENLYFNGMGYYHHHH-----HHDYDIPTTENLYFQGMLAGVSE 55
Query: 163 FTPQEPGELEFRRGDVI 179
+ E E R ++
Sbjct: 56 YELPEDPRWELPRDRLV 72
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 31.6 bits (71), Expect = 0.38
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW 190
++AL D+ + +GD + D +++ W
Sbjct: 286 LRALCDYKQDQ---KIVHKGDECILKDNNERSKW 316
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3
domain, structural genomics, protein structure
initiative; NMR {Bacillus thuringiensis
serovarkonkukian}
Length = 70
Score = 28.8 bits (65), Expect = 0.46
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 21 KSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYY 62
+ Q +++++ W + +G+ G I + Y+ H ++
Sbjct: 30 QGQKVQVISENSG--WSKINYNGQTGYIGTRYLSKLEHHHHH 69
Score = 27.2 bits (61), Expect = 2.0
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 214 NWYRAELDGKEGLIPSNYIEMKNHDWYY 241
W + +G+ G I + Y+ H ++
Sbjct: 42 GWSKINYNGQTGYIGTRYLSKLEHHHHH 69
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 31.4 bits (70), Expect = 0.57
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 147 LRDMVPEECLVQALYDFTPQEPGEL-----EFRRGDVITVTDRSDQHWW 190
LR ++AL+D+ + FR GDV+ V D D+ WW
Sbjct: 420 LRSNPKRGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWW 468
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 30.7 bits (70), Expect = 0.64
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
+ +ALY F P+ P EL GD+I +TD SD +WW G R GL P+ Y+ + +
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV-AEQAESID 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.96
Identities = 28/209 (13%), Positives = 64/209 (30%), Gaps = 71/209 (33%)
Query: 181 VTDRSDQHWWHGEIGARKGLF------PATYILNMEDDMNWYRA--ELDGKEGLIPSNYI 232
+ + S + + E G L PA + ME +A E +GLIP++
Sbjct: 1710 INEHSTSYTFRSEKGL---LSATQFTQPA--LTLME------KAAFEDLKSKGLIPADAT 1758
Query: 233 -------EMKNHDWYY-------GRITRADAERLLSNKHEGAFLIRVSESS--------- 269
E Y ++ ++ + G +
Sbjct: 1759 FAGHSLGE-------YAALASLADVMSIESLVEVV--FYRGMTMQVAVPRDELGRSNYGM 1809
Query: 270 ----PGDFSLSVKCSDGVQHF-KVLRDSSGKFFLWVVKFNS-------------LNELVE 311
PG + S + +Q+ + + +G + + +V +N L+ +
Sbjct: 1810 IAINPGRVAASF-SQEALQYVVERVGKRTG-WLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 312 YHRTASVSRSQDVKLRDMVPEECLVQALY 340
+ + ++L+ + E + L+
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 28.5 bits (63), Expect = 4.4
Identities = 18/159 (11%), Positives = 48/159 (30%), Gaps = 52/159 (32%)
Query: 44 KEGLIPSNYI-------EMKNHDWYY-------GRITRADAERLLSNKHEGAFLIRVSES 89
+GLIP++ E Y ++ ++ + G +
Sbjct: 1749 SKGLIPADATFAGHSLGE-------YAALASLADVMSIESLVEVV--FYRGMTMQVAVPR 1799
Query: 90 S-------------PGDFSLSVKCSDGVQHF-KVLRDSSGKFFLWVVKFNS--------- 126
PG + S + +Q+ + + +G + + +V +N
Sbjct: 1800 DELGRSNYGMIAINPGRVAASF-SQEALQYVVERVGKRTG-WLVEIVNYNVENQQYVAAG 1857
Query: 127 ----LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY 161
L+ + + + ++L+ + E + L+
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606,
structural genomics, PSI-2, protein structure
initiative; NMR {Clostridium perfringens}
Length = 74
Score = 28.0 bits (63), Expect = 1.1
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 21 KSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
+ ++I+ D WY +GK G +YI + N
Sbjct: 29 NNDKVEIIKEVDG--WYEIRFNGKVGYASKSYITIVN 63
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 29.5 bits (65), Expect = 2.4
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVT-----DRSDQHWWHGEI--GARKGLFPATYI 206
+Q + +E G L F +GD+I + + W +G ++G FP +
Sbjct: 579 LQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCV 635
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.2
Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 77 KHEGAFLIRVSESSPGDFSLSVKCS 101
K + + + +S+P +L++K +
Sbjct: 24 KLQASLKLYADDSAP---ALAIKAT 45
Score = 27.6 bits (60), Expect = 4.2
Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 256 KHEGAFLIRVSESSPGDFSLSVKCS 280
K + + + +S+P +L++K +
Sbjct: 24 KLQASLKLYADDSAP---ALAIKAT 45
>1vpy_A Protein (hypothetical protein EF0366); TIM alpha/beta barrel fold,
structural genomics, joint cente structural genomics,
JCSG; 2.52A {Enterococcus faecalis} SCOP: c.1.32.1 PDB:
1ztv_A
Length = 289
Score = 28.0 bits (62), Expect = 5.3
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 88 ESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKF-NSLNELVEYHRTASV 139
++ P +F +K G+ + + F S+ L+E + +
Sbjct: 65 KAVPENFRFVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAF 117
Score = 28.0 bits (62), Expect = 5.3
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 267 ESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKF-NSLNELVEYHRTASV 318
++ P +F +K G+ + + F S+ L+E + +
Sbjct: 65 KAVPENFRFVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAF 117
>3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller,
glycoside hydrolase family GH117,
agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia
galactanivorans}
Length = 408
Score = 27.5 bits (60), Expect = 7.9
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 7 HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRIT 66
+ A D ++F V+ +N A+++ + I + ++ Y I
Sbjct: 331 KNTIQWAPDGINFEIKSVIPGVNAHAIGLNRTADVEKEPTEILRWGLTHIYNNGDYQSIM 390
Query: 67 RADAERLLSNKHEG 80
R +ER + +G
Sbjct: 391 RFSSERKTRHVAKG 404
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 9.0
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 19/78 (24%)
Query: 63 GRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL--RDSSGKFFLW 120
G I + LL GA ++ V+ S FS V +++ + + + L
Sbjct: 487 GSIGAEVLQGLLQ---GGAKVV-VTTSR---FSKQV-----TDYYQSIYAKYGAKGSTLI 534
Query: 121 VVKFNS-----LNELVEY 133
VV FN + L+E+
Sbjct: 535 VVPFNQGSKQDVEALIEF 552
Score = 27.5 bits (61), Expect = 9.0
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 19/78 (24%)
Query: 242 GRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL--RDSSGKFFLW 299
G I + LL GA ++ V+ S FS V +++ + + + L
Sbjct: 487 GSIGAEVLQGLLQ---GGAKVV-VTTSR---FSKQV-----TDYYQSIYAKYGAKGSTLI 534
Query: 300 VVKFNS-----LNELVEY 312
VV FN + L+E+
Sbjct: 535 VVPFNQGSKQDVEALIEF 552
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,836,088
Number of extensions: 349733
Number of successful extensions: 2279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1583
Number of HSP's successfully gapped: 754
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)