BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10193
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BQM|A Chain A, Contribution Of Hydrophobic Effect To The Conformational
           Stability Of Human Lysozyme
          Length = 130

 Score = 29.6 bits (65), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 52  NAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIAT 111
           NAG +  +    Q  S Y   DG          +T   A+ AHL     + D IA A+A 
Sbjct: 46  NAGDRSTDYGIFQINSRYWCNDG----------KTPGAANAAHLSCSALLQDNIADAVAA 95

Query: 112 LPKLVEE 118
             ++V +
Sbjct: 96  AKRVVRD 102


>pdb|1IX0|A Chain A, I59a-3ss Human Lysozyme
          Length = 130

 Score = 29.6 bits (65), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 52  NAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIAT 111
           NAG +  +    Q  S Y   DG          +T    + AHL     + D IA A+A 
Sbjct: 46  NAGDRSTDYGIFQANSRYWCNDG----------KTPGAVNAAHLSCSALLQDNIADAVAA 95

Query: 112 LPKLVEE 118
             ++V +
Sbjct: 96  AKRVVRD 102


>pdb|2O2Z|A Chain A, Crystal Structure Of A Protein Member Of The Upf0052
           Family (Bh3568) From Bacillus Halodurans At 2.60 A
           Resolution
 pdb|2O2Z|B Chain B, Crystal Structure Of A Protein Member Of The Upf0052
           Family (Bh3568) From Bacillus Halodurans At 2.60 A
           Resolution
 pdb|2O2Z|C Chain C, Crystal Structure Of A Protein Member Of The Upf0052
           Family (Bh3568) From Bacillus Halodurans At 2.60 A
           Resolution
 pdb|2O2Z|D Chain D, Crystal Structure Of A Protein Member Of The Upf0052
           Family (Bh3568) From Bacillus Halodurans At 2.60 A
           Resolution
          Length = 323

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 25  EPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQS 67
           EP ++  ++  FE GNG++    G L  AG   +    A+G S
Sbjct: 69  EPLLEQLFQHRFENGNGLSGHSLGNLLLAGXTSITGDFARGIS 111


>pdb|2HZB|A Chain A, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus
           Halodurans. Northeast Structural Genomics Consortium
           Bhr60.
 pdb|2HZB|B Chain B, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus
           Halodurans. Northeast Structural Genomics Consortium
           Bhr60.
 pdb|2HZB|C Chain C, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus
           Halodurans. Northeast Structural Genomics Consortium
           Bhr60.
 pdb|2HZB|D Chain D, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus
           Halodurans. Northeast Structural Genomics Consortium
           Bhr60
          Length = 333

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 25  EPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQS 67
           EP ++  ++  FE GNG++    G L  AG   +    A+G S
Sbjct: 68  EPLLEQLFQHRFENGNGLSGHSLGNLLLAGXTSITGDFARGIS 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.130    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,425,498
Number of Sequences: 62578
Number of extensions: 188422
Number of successful extensions: 345
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 8
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)