Query psy10193
Match_columns 135
No_of_seqs 133 out of 1046
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 20:14:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00379 Chitin_bind_4: Insect 99.7 4E-17 8.7E-22 103.4 7.3 52 32-88 1-52 (52)
2 PF06004 DUF903: Bacterial pro 88.3 1.4 3E-05 27.9 4.6 39 34-80 2-40 (50)
3 PHA02698 hypothetical protein; 64.8 4.1 8.9E-05 28.4 1.4 20 86-105 19-38 (89)
4 PF00659 POLO_box: POLO box du 48.0 61 0.0013 20.6 4.8 61 31-112 4-67 (68)
5 PRK15401 alpha-ketoglutarate-d 46.2 36 0.00078 27.4 4.2 49 64-112 45-104 (213)
6 PF10902 DUF2693: Protein of u 41.3 1.1E+02 0.0023 21.3 5.4 57 30-90 1-63 (83)
7 PF13511 DUF4124: Domain of un 39.7 25 0.00055 21.7 1.9 18 64-84 13-30 (60)
8 cd07252 BphC1-RGP6_N_like N-te 35.9 51 0.0011 22.4 3.2 20 66-85 101-120 (120)
9 cd07240 ED_TypeI_classII_N N-t 34.5 62 0.0013 21.2 3.4 20 66-85 98-117 (117)
10 TIGR01643 YD_repeat_2x YD repe 34.2 69 0.0015 18.0 3.1 21 68-90 9-29 (42)
11 PF05423 Mycobact_memb: Mycoba 29.7 1.1E+02 0.0024 23.0 4.3 23 64-87 52-74 (140)
12 COG3422 Uncharacterized conser 29.7 61 0.0013 21.3 2.5 21 23-43 6-26 (59)
13 PRK05461 apaG CO2+/MG2+ efflux 29.3 73 0.0016 23.6 3.2 21 59-79 93-113 (127)
14 PF03562 MltA: MltA specific i 28.7 39 0.00084 26.1 1.7 57 58-118 79-143 (158)
15 cd08344 MhqB_like_N N-terminal 27.7 68 0.0015 21.4 2.7 18 66-83 93-110 (112)
16 PF09244 DUF1964: Domain of un 26.9 76 0.0016 21.2 2.6 22 64-85 3-24 (68)
17 PRK14818 NADH dehydrogenase su 26.9 39 0.00084 26.6 1.4 22 94-115 133-154 (173)
18 PF05899 Cupin_3: Protein of u 26.8 1.1E+02 0.0023 19.9 3.5 33 58-92 27-59 (74)
19 PF12118 SprA-related: SprA-re 26.1 84 0.0018 26.6 3.4 40 66-113 175-215 (294)
20 COG2967 ApaG Uncharacterized p 25.9 1.3E+02 0.0029 22.5 4.1 21 59-79 92-112 (126)
21 PHA02978 hypothetical protein; 24.5 71 0.0015 23.7 2.4 16 65-80 75-90 (135)
22 cd07244 FosA FosA, a Fosfomyci 23.3 96 0.0021 20.9 2.8 18 66-83 94-111 (121)
23 PF13127 DUF3955: Protein of u 22.8 48 0.001 21.7 1.1 13 66-78 24-36 (63)
24 cd09013 BphC-JF8_N_like N-term 22.2 1.2E+02 0.0025 20.4 3.1 16 66-81 102-117 (121)
25 PF06486 DUF1093: Protein of u 22.1 1.2E+02 0.0026 19.9 3.0 20 65-84 26-49 (78)
26 PF09242 FCSD-flav_bind: Flavo 21.1 1.2E+02 0.0027 19.9 2.9 28 64-91 8-36 (71)
27 COG4786 FlgG Flagellar basal b 21.0 1.7E+02 0.0037 24.4 4.3 56 44-99 80-138 (265)
28 cd07266 HPCD_N_class_II N-term 20.6 1.3E+02 0.0029 19.9 3.1 16 66-81 102-117 (121)
29 PRK06724 hypothetical protein; 20.2 1.3E+02 0.0028 21.3 3.0 21 64-84 103-125 (128)
30 cd09012 Glo_EDI_BRP_like_24 Th 20.1 1.4E+02 0.003 20.1 3.1 14 68-81 110-123 (124)
No 1
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=99.71 E-value=4e-17 Score=103.43 Aligned_cols=52 Identities=37% Similarity=0.700 Sum_probs=46.3
Q ss_pred eeeEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEEEEeCCCCc
Q psy10193 32 YKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88 (135)
Q Consensus 32 Y~f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~YtADenGf 88 (135)
|+|+|+++|| .++|.+. .++ ++..++|+|+|+|++|||+.++|+|+||++||
T Consensus 1 Y~f~Y~~~dg-~~~e~~~---~~~-~~~~~~v~GsY~y~~pdG~~~~V~Y~Ad~~Gf 52 (52)
T PF00379_consen 1 YSFGYETSDG-SRQEEGR---PET-EDEGGVVRGSYSYIDPDGQTRTVTYVADENGF 52 (52)
T ss_pred CeeEeEcCCC-CEEEEEE---ccc-CCCCCEEEEEEEEECCCCCEEEEEEECCCCCC
Confidence 7899999999 8888877 222 56778999999999999999999999999998
No 2
>PF06004 DUF903: Bacterial protein of unknown function (DUF903); InterPro: IPR010305 This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.; PDB: 2RB6_B 3BDU_F 2RA2_F 2RD1_C 3FIF_H 2JN0_A 2K57_A.
Probab=88.34 E-value=1.4 Score=27.90 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=28.4
Q ss_pred eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193 34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ 80 (135)
Q Consensus 34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~ 80 (135)
|--.+.||......|..+-. .-.|.|+|.+.+|+.+.|+
T Consensus 2 yvi~t~dG~~i~t~gkP~~D--------~~tG~~~y~D~~G~~~qIn 40 (50)
T PF06004_consen 2 YVITTNDGRTIVTDGKPKYD--------KDTGMYSYTDADGKEQQIN 40 (50)
T ss_dssp EEEEETTSEEEEESSEEEEE--------TTTTEEEEEBTTS-EEEEE
T ss_pred cEEEeCCCcEEEeCCCcccc--------CCCCcEEEECCCCCEEEEc
Confidence 34467788877777766532 3589999999999998875
No 3
>PHA02698 hypothetical protein; Provisional
Probab=64.80 E-value=4.1 Score=28.36 Aligned_cols=20 Identities=35% Similarity=0.826 Sum_probs=16.5
Q ss_pred CCcccccCCCCCCCCCCHHH
Q psy10193 86 TGYHASGAHLPTPPPIPDEI 105 (135)
Q Consensus 86 nGf~p~g~~lP~pPpip~~i 105 (135)
.|-|+.|+..|+|-|+|+++
T Consensus 19 ddvqvnGDlmPtp~p~peeV 38 (89)
T PHA02698 19 DDVQVNGDLMPTPEPTPEEV 38 (89)
T ss_pred hccccCCcccCCCCCChhhh
Confidence 46788999999999988655
No 4
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=47.95 E-value=61 Score=20.61 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=31.5
Q ss_pred CeeeEEEcCCCceEEEeeeeecCCcccccccee---eeEEEEECCCCcEEEEEEEeCCCCcccccCCCCCCCCCCHHHHH
Q psy10193 31 TYKFAFETGNGIAVQEQGALKNAGQKDLEAQTA---QGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAK 107 (135)
Q Consensus 31 ~Y~f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v---~GsYsy~~pDG~~~~V~YtADenGf~p~g~~lP~pPpip~~i~~ 107 (135)
.|.+.|..+||.. |..-+.++ -+++ .....|++++|+..+ |...+ +... .|+++.+
T Consensus 4 k~gi~~~LSng~v----qv~FnD~t----kivl~~~~~~v~yi~~~~~~~~--~~~~~---------~~~~--~p~~l~~ 62 (68)
T PF00659_consen 4 KYGIGYQLSNGTV----QVNFNDHT----KIVLSPDGRLVTYIDRDGERQT--YSLSS---------LLED--FPEDLKK 62 (68)
T ss_dssp CSEEEEEETTSEE----EEEETTS-----EEEEETTCCEEEEE-TTS-EEE--EECTC---------HHHH----HHHHH
T ss_pred ceEEEEEEeCCCE----EEEEeCCC----EEEECCCCCEEEEECCCCcEEE--EEccc---------cccC--CCHHHHH
Confidence 4789999999984 44555444 1222 236667777666433 33332 1110 3577777
Q ss_pred HHHhc
Q psy10193 108 AIATL 112 (135)
Q Consensus 108 al~~~ 112 (135)
-|.++
T Consensus 63 kl~~~ 67 (68)
T PF00659_consen 63 KLTYL 67 (68)
T ss_dssp HHHHH
T ss_pred Hhhcc
Confidence 77665
No 5
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=46.19 E-value=36 Score=27.38 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=33.3
Q ss_pred eeEEEEECCCCcEEEE--------EEEeCCCCcccccCC--CCCC-CCCCHHHHHHHHhc
Q psy10193 64 QGQSSYTSPDGTPIQT--------QWYADETGYHASGAH--LPTP-PPIPDEIAKAIATL 112 (135)
Q Consensus 64 ~GsYsy~~pDG~~~~V--------~YtADenGf~p~g~~--lP~p-Ppip~~i~~al~~~ 112 (135)
..-+...-+.|....| -|.+|+.||+=++.+ -+.| ||+|+.+++-.+.+
T Consensus 45 ~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P~~l~~L~~~~ 104 (213)
T PRK15401 45 APFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPAMPASFLALAQRA 104 (213)
T ss_pred CCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCCchHHHHHHHHHH
Confidence 3346677788877666 788999999998754 3444 56777665544433
No 6
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=41.33 E-value=1.1e+02 Score=21.31 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=35.3
Q ss_pred CCeeeEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCC------cEEEEEEEeCCCCccc
Q psy10193 30 GTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDG------TPIQTQWYADETGYHA 90 (135)
Q Consensus 30 G~Y~f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG------~~~~V~YtADenGf~p 90 (135)
|.-.|-|+-.||+.|.-.|+++..-- .....|.+.+.-+.. ....+-|--+.+|||-
T Consensus 1 G~h~~~feK~DGtiR~a~gT~d~~li----~~~~~~~~~~~~~~~~~rkes~~s~~yfDve~~~WRS 63 (83)
T PF10902_consen 1 GEHEFVFEKVDGTIRVAKGTRDPDLI----PYEEKGKEMFPPPTKPERKESTTSVRYFDVEKKGWRS 63 (83)
T ss_pred CcEEEEEEecCCCEEEEEEecCcccc----cceecCcccccCCCCccccCCcceEEEEEeccCceee
Confidence 45678999999999999999874321 123445544433322 2334456666778774
No 7
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=39.72 E-value=25 Score=21.73 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=14.2
Q ss_pred eeEEEEECCCCcEEEEEEEeC
Q psy10193 64 QGQSSYTSPDGTPIQTQWYAD 84 (135)
Q Consensus 64 ~GsYsy~~pDG~~~~V~YtAD 84 (135)
..-|+|+|.+|+. +|+-.
T Consensus 13 a~vYk~~D~~G~v---~ysd~ 30 (60)
T PF13511_consen 13 AEVYKWVDENGVV---HYSDT 30 (60)
T ss_pred ccEEEEECCCCCE---EECcc
Confidence 4679999999984 66665
No 8
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=35.89 E-value=51 Score=22.38 Aligned_cols=20 Identities=25% Similarity=0.523 Sum_probs=16.5
Q ss_pred EEEEECCCCcEEEEEEEeCC
Q psy10193 66 QSSYTSPDGTPIQTQWYADE 85 (135)
Q Consensus 66 sYsy~~pDG~~~~V~YtADe 85 (135)
++.+.||||..+++.|..+|
T Consensus 101 ~~~~~DPdG~~iE~~~~~~~ 120 (120)
T cd07252 101 LIRFADPDGNRHELFWGPKE 120 (120)
T ss_pred EEEEECCCCCEEEEEecccC
Confidence 67899999999998886543
No 9
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=34.46 E-value=62 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.0
Q ss_pred EEEEECCCCcEEEEEEEeCC
Q psy10193 66 QSSYTSPDGTPIQTQWYADE 85 (135)
Q Consensus 66 sYsy~~pDG~~~~V~YtADe 85 (135)
++.+.||||..+++.+..|+
T Consensus 98 ~~~~~DP~G~~ie~~~~~~~ 117 (117)
T cd07240 98 GLRFQDPDGHLLELFVEADK 117 (117)
T ss_pred EEEEECCCCCEEEEEEccCC
Confidence 55688999999999877553
No 10
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=34.21 E-value=69 Score=18.04 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=13.3
Q ss_pred EEECCCCcEEEEEEEeCCCCccc
Q psy10193 68 SYTSPDGTPIQTQWYADETGYHA 90 (135)
Q Consensus 68 sy~~pDG~~~~V~YtADenGf~p 90 (135)
+.++|+|...+..| |..|-..
T Consensus 9 ~~~~p~G~~~~~~Y--D~~Grl~ 29 (42)
T TIGR01643 9 GSTDADGTTTRYTY--DAAGRLV 29 (42)
T ss_pred EEECCCCCEEEEEE--CCCCCEE
Confidence 45778888766666 5555443
No 11
>PF05423 Mycobact_memb: Mycobacterium membrane protein; InterPro: IPR008693 This family contains several membrane proteins from Mycobacterium species [].
Probab=29.72 E-value=1.1e+02 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=17.6
Q ss_pred eeEEEEECCCCcEEEEEEEeCCCC
Q psy10193 64 QGQSSYTSPDGTPIQTQWYADETG 87 (135)
Q Consensus 64 ~GsYsy~~pDG~~~~V~YtADenG 87 (135)
+=.|.-.++.|...+|+|. |++|
T Consensus 52 ~V~YEV~G~~G~~~~I~Y~-D~~~ 74 (140)
T PF05423_consen 52 TVTYEVTGPPGSTATISYL-DADG 74 (140)
T ss_pred EEEEEEEcCCCCeEEEEEE-cCCC
Confidence 4468888888999999997 5554
No 12
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=29.68 E-value=61 Score=21.29 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=16.5
Q ss_pred eccCCCCCCeeeEEEcCCCce
Q psy10193 23 VNEPPVDGTYKFAFETGNGIA 43 (135)
Q Consensus 23 ~~~~~~dG~Y~f~Ye~~dG~~ 43 (135)
+--.+.+|.|.|.+...||..
T Consensus 6 ei~kdk~Ge~rfrlkA~N~ei 26 (59)
T COG3422 6 EIYKDKAGEYRFRLKAANGEI 26 (59)
T ss_pred EEEEcCCCcEEEEEEccCccE
Confidence 344678899999999988765
No 13
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=29.28 E-value=73 Score=23.57 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=16.8
Q ss_pred ccceeeeEEEEECCCCcEEEE
Q psy10193 59 EAQTAQGQSSYTSPDGTPIQT 79 (135)
Q Consensus 59 ~~~~v~GsYsy~~pDG~~~~V 79 (135)
....++|+|.+++++|....|
T Consensus 93 p~G~M~G~y~~~~~~G~~F~v 113 (127)
T PRK05461 93 PSGTMQGHYQMVDEDGERFEV 113 (127)
T ss_pred CCEEEEEEEEEEeCCCCEEEE
Confidence 345799999999999987553
No 14
>PF03562 MltA: MltA specific insert domain; InterPro: IPR005300 This group of proteins includes MltA; a membrane-bound, murein degrading transglycosylase enzyme which plays an important role in the controlled growth of the stress-bearing sacculus of Escherichia coli [, ].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 2PI8_D 2AE0_X 2PIC_A 2GAE_A 2PJJ_A 3CZB_A 2G6G_A 2PNW_A 2G5D_A.
Probab=28.73 E-value=39 Score=26.07 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=35.0
Q ss_pred cccceeeeEEEEECCCCcEEEEEEEeCCCC--cccccC------CCCCCCCCCHHHHHHHHhcccccCC
Q psy10193 58 LEAQTAQGQSSYTSPDGTPIQTQWYADETG--YHASGA------HLPTPPPIPDEIAKAIATLPKLVEE 118 (135)
Q Consensus 58 ~~~~~v~GsYsy~~pDG~~~~V~YtADenG--f~p~g~------~lP~pPpip~~i~~al~~~~~~p~~ 118 (135)
-..+.|+||=.-.-+||..+.|.|-+ .|| |+..|. .|+..- -..+.--+|+.+||..
T Consensus 79 ~fflqIQGSGrl~l~DG~~~rvgYAg-~NG~pY~sIGr~Li~~G~i~~~~---~Smq~Ir~wl~~~P~~ 143 (158)
T PF03562_consen 79 AFFLQIQGSGRLRLPDGSTVRVGYAG-QNGHPYTSIGRLLIDRGEIPREQ---MSMQAIRAWLRAHPEE 143 (158)
T ss_dssp HHHHHHHSEEEEE-TTSSEEEEEEEE-E-SS----HHHHHHHTTSS-TTS----SHHHHHHHHHHTGGG
T ss_pred hHHeeecCcEEEEcCCCCEEEEEEcc-cCCCccccHHHHHHHcCCcChhh---CCHHHHHHHHHHCHHH
Confidence 34678999999999999999999955 555 555442 354211 2244455688888863
No 15
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=27.68 E-value=68 Score=21.40 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=14.7
Q ss_pred EEEEECCCCcEEEEEEEe
Q psy10193 66 QSSYTSPDGTPIQTQWYA 83 (135)
Q Consensus 66 sYsy~~pDG~~~~V~YtA 83 (135)
++.+.||||..+++.+-+
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 577999999999988543
No 16
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=26.93 E-value=76 Score=21.23 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=16.1
Q ss_pred eeEEEEECCCCcEEEEEEEeCC
Q psy10193 64 QGQSSYTSPDGTPIQTQWYADE 85 (135)
Q Consensus 64 ~GsYsy~~pDG~~~~V~YtADe 85 (135)
-|.|||-..++.-++.+|++.+
T Consensus 3 dG~FSy~~dgdtSitf~W~g~~ 24 (68)
T PF09244_consen 3 DGEFSYEADGDTSITFTWTGAT 24 (68)
T ss_dssp GSEEEEEEETTTEEEEEEE-SS
T ss_pred cceeeEecCCCcEEEEEEeccc
Confidence 4778888777778888888764
No 17
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=26.87 E-value=39 Score=26.63 Aligned_cols=22 Identities=23% Similarity=0.612 Sum_probs=16.9
Q ss_pred CCCCCCCCCHHHHHHHHhcccc
Q psy10193 94 HLPTPPPIPDEIAKAIATLPKL 115 (135)
Q Consensus 94 ~lP~pPpip~~i~~al~~~~~~ 115 (135)
.||-=||.|++|+.+|-.+.+.
T Consensus 133 yIPGCPP~PeaIl~gil~L~~~ 154 (173)
T PRK14818 133 YVPGCPPRPEALTEGLLRLQEI 154 (173)
T ss_pred EccCCCCCHHHHHHHHHHHHHH
Confidence 5677799999999988755443
No 18
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=26.84 E-value=1.1e+02 Score=19.93 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=23.8
Q ss_pred cccceeeeEEEEECCCCcEEEEEEEeCCCCccccc
Q psy10193 58 LEAQTAQGQSSYTSPDGTPIQTQWYADETGYHASG 92 (135)
Q Consensus 58 ~~~~~v~GsYsy~~pDG~~~~V~YtADenGf~p~g 92 (135)
+-..++.|+-..++++|.. +++.|.+-=|-|.|
T Consensus 27 E~~~vleG~v~it~~~G~~--~~~~aGD~~~~p~G 59 (74)
T PF05899_consen 27 EFFYVLEGEVTITDEDGET--VTFKAGDAFFLPKG 59 (74)
T ss_dssp EEEEEEEEEEEEEETTTEE--EEEETTEEEEE-TT
T ss_pred EEEEEEEeEEEEEECCCCE--EEEcCCcEEEECCC
Confidence 3457999999999999997 56777764444443
No 19
>PF12118 SprA-related: SprA-related family; InterPro: IPR021973 Most members of this uncharacterised protein family are annotated as being SprA-related.
Probab=26.13 E-value=84 Score=26.62 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=22.6
Q ss_pred EEEEE-CCCCcEEEEEEEeCCCCcccccCCCCCCCCCCHHHHHHHHhcc
Q psy10193 66 QSSYT-SPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLP 113 (135)
Q Consensus 66 sYsy~-~pDG~~~~V~YtADenGf~p~g~~lP~pPpip~~i~~al~~~~ 113 (135)
+|+|. +|||+.|- +.+| +..+.-|+ |-.|++.++=+..|+
T Consensus 175 sy~y~~GpDg~~Ya---vgGe----V~id~s~v-~~~P~ati~k~~~v~ 215 (294)
T PF12118_consen 175 SYSYQRGPDGKRYA---VGGE----VSIDTSPV-PGDPEATIQKMQQVR 215 (294)
T ss_pred ceeeeeCCCCceee---ccce----eeeeecCC-CCCHHHHHHHHHHHH
Confidence 67775 89999887 5566 44343332 234555444444443
No 20
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=25.91 E-value=1.3e+02 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.0
Q ss_pred ccceeeeEEEEECCCCcEEEE
Q psy10193 59 EAQTAQGQSSYTSPDGTPIQT 79 (135)
Q Consensus 59 ~~~~v~GsYsy~~pDG~~~~V 79 (135)
...+.+|.|..++.||....|
T Consensus 92 p~G~M~GhY~M~~e~G~~F~v 112 (126)
T COG2967 92 PSGTMQGHYEMIDEDGETFDV 112 (126)
T ss_pred CcceEEEEEEEecCCCcEEEe
Confidence 456899999999999998765
No 21
>PHA02978 hypothetical protein; Provisional
Probab=24.54 E-value=71 Score=23.71 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=12.8
Q ss_pred eEEEEECCCCcEEEEE
Q psy10193 65 GQSSYTSPDGTPIQTQ 80 (135)
Q Consensus 65 GsYsy~~pDG~~~~V~ 80 (135)
=.+||.+|||..++|+
T Consensus 75 iy~sy~~~~gisiqvs 90 (135)
T PHA02978 75 IYFSYADPDGISIQVS 90 (135)
T ss_pred EEEEecCCCceEEEEe
Confidence 3567899999988875
No 22
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=23.30 E-value=96 Score=20.95 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.2
Q ss_pred EEEEECCCCcEEEEEEEe
Q psy10193 66 QSSYTSPDGTPIQTQWYA 83 (135)
Q Consensus 66 sYsy~~pDG~~~~V~YtA 83 (135)
++.+.||||..+++.+-|
T Consensus 94 ~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 94 SFYFLDPDGHKLELHVGS 111 (121)
T ss_pred EEEEECCCCCEEEEEeCC
Confidence 556889999999988654
No 23
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=22.81 E-value=48 Score=21.66 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=9.8
Q ss_pred EEEEECCCCcEEE
Q psy10193 66 QSSYTSPDGTPIQ 78 (135)
Q Consensus 66 sYsy~~pDG~~~~ 78 (135)
++||+|+||...+
T Consensus 24 ~~syVd~~G~L~E 36 (63)
T PF13127_consen 24 IGSYVDEDGVLHE 36 (63)
T ss_pred ccceECCCCeEec
Confidence 3579999998754
No 24
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=22.18 E-value=1.2e+02 Score=20.40 Aligned_cols=16 Identities=38% Similarity=0.966 Sum_probs=13.7
Q ss_pred EEEEECCCCcEEEEEE
Q psy10193 66 QSSYTSPDGTPIQTQW 81 (135)
Q Consensus 66 sYsy~~pDG~~~~V~Y 81 (135)
++.+.||||..+++.|
T Consensus 102 ~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 102 AYRFRSPDGHPMELYW 117 (121)
T ss_pred eEEEECCCCCEEEEEE
Confidence 5678999999999876
No 25
>PF06486 DUF1093: Protein of unknown function (DUF1093); InterPro: IPR006542 These are a family of small (about 115 amino acids) uncharacterised proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.; PDB: 3NPP_B 2K5Q_A 2K5W_A.
Probab=22.12 E-value=1.2e+02 Score=19.85 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=15.1
Q ss_pred eEEEEE----CCCCcEEEEEEEeC
Q psy10193 65 GQSSYT----SPDGTPIQTQWYAD 84 (135)
Q Consensus 65 GsYsy~----~pDG~~~~V~YtAD 84 (135)
+.|.|. +.+|+..+|+|+|+
T Consensus 26 ~~Y~Y~l~~yd~~G~~k~l~f~~~ 49 (78)
T PF06486_consen 26 KGYEYTLKGYDEDGKEKTLTFTAS 49 (78)
T ss_dssp CEEEEEEEEEETT--EEEEEEEES
T ss_pred ceEEEEEEEECCCCCEEEEEEEec
Confidence 677775 67999999999998
No 26
>PF09242 FCSD-flav_bind: Flavocytochrome c sulphide dehydrogenase, flavin-binding; InterPro: IPR015323 This entry represents the flavin-binding domain of flavocytochrome c sulphide dehydrogenase (FCSD), enzymes found in sulphur-oxidising bacteria such as the purple phototrophic bacteria Chromatium vinosum [, ]. These enzymes are complexes of flavoprotein and a dihaem cytochrome that carry out hydrogen sulphide-dependent cytochrome C reduction. The dihaem cytochrome folds into two domains, each of which resembles mitochondrial cytochrome c, with the two haem groups bound to the interior of the subunit. The flavoprotein subunit has a glutathione reductase-like fold consisting of a beta(3,4)-alpha(3) core, and an alpha+beta sandwich. The active site of the flavoprotein subunit contains a catalytically important disulphide bridge located above the pyrimidine portion of the flavin ring []. Electrons are transferred from the flavin to one of the haem groups in the cytochrome. This entry represents a flavoprotein domain required for binding to flavin, and subsequent electron transfer. ; PDB: 1FCD_A.
Probab=21.08 E-value=1.2e+02 Score=19.94 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=18.3
Q ss_pred eeEEEEECCC-CcEEEEEEEeCCCCcccc
Q psy10193 64 QGQSSYTSPD-GTPIQTQWYADETGYHAS 91 (135)
Q Consensus 64 ~GsYsy~~pD-G~~~~V~YtADenGf~p~ 91 (135)
.==||+++|| |..+...|..++.++...
T Consensus 8 NtCYSlv~p~~aIsVa~vy~~~~~~i~~v 36 (71)
T PF09242_consen 8 NTCYSLVAPDYAISVAGVYRYDDGKIVEV 36 (71)
T ss_dssp EEEEEEEETTEEEEEEEEEEE-TTTEEE-
T ss_pred eeEEEEeCCCceEEEEEEEEECCCeEEEe
Confidence 3358888775 777777788887776443
No 27
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=20.97 E-value=1.7e+02 Score=24.43 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=36.0
Q ss_pred EEEeeeeecCCccccccceeeeEEEEECCCCc-EEEE--EEEeCCCCcccccCCCCCCC
Q psy10193 44 VQEQGALKNAGQKDLEAQTAQGQSSYTSPDGT-PIQT--QWYADETGYHASGAHLPTPP 99 (135)
Q Consensus 44 ~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~-~~~V--~YtADenGf~p~g~~lP~pP 99 (135)
..+.|.++..+..-+-.+.-.|.|....|||. .|+= +++-|++||-+..+-.|+-|
T Consensus 80 ~~tqGsl~~T~n~lD~AI~g~gfF~I~~~dG~~~YTR~G~F~~d~~G~LVT~~G~~vl~ 138 (265)
T COG4786 80 VFTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVDEEGQLVTSNGYPVLD 138 (265)
T ss_pred eccccCceecCCccceEEcCCceEEEEcCCCCEEEeeCCceeECCCCCEEeCCCCCccC
Confidence 34566666555422344556888988899994 3332 26667888888877666655
No 28
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=20.59 E-value=1.3e+02 Score=19.90 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.0
Q ss_pred EEEEECCCCcEEEEEE
Q psy10193 66 QSSYTSPDGTPIQTQW 81 (135)
Q Consensus 66 sYsy~~pDG~~~~V~Y 81 (135)
++.+.||||..+++.|
T Consensus 102 ~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 102 ALRVEDPLGFPIEFYA 117 (121)
T ss_pred EEEEECCCCCEEEEEe
Confidence 5678899999988765
No 29
>PRK06724 hypothetical protein; Provisional
Probab=20.18 E-value=1.3e+02 Score=21.34 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=15.9
Q ss_pred eeEEE--EECCCCcEEEEEEEeC
Q psy10193 64 QGQSS--YTSPDGTPIQTQWYAD 84 (135)
Q Consensus 64 ~GsYs--y~~pDG~~~~V~YtAD 84 (135)
.|.|+ +.||||..+++.|.++
T Consensus 103 ~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 103 EGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred CCEEEEEEECCCCCEEEEEeCCC
Confidence 45454 6799999999988754
No 30
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.12 E-value=1.4e+02 Score=20.10 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=12.2
Q ss_pred EEECCCCcEEEEEE
Q psy10193 68 SYTSPDGTPIQTQW 81 (135)
Q Consensus 68 sy~~pDG~~~~V~Y 81 (135)
.+.||||...++.|
T Consensus 110 ~~~DPdG~~ie~~~ 123 (124)
T cd09012 110 SFADLDGHLWEVLW 123 (124)
T ss_pred EEECCCCCEEEEEE
Confidence 48899999999887
Done!