RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10193
(135 letters)
>gnl|CDD|215886 pfam00379, Chitin_bind_4, Insect cuticle protein. Many insect
cuticular proteins include a 35-36 amino acid motif
known as the R&R consensus. The extensive conservation
of this region led to the suggestion that it functions
to bind chitin. Provocatively, it has no sequence
similarity to the well-known cysteine-containing
chitin-binding domain found in chitinases and some
peritrophic membrane proteins. Chitin binding has been
shown experimentally for this region. Thus arthropods
have two distinct classes of chitin binding proteins,
those with the chitin-binding domain found in lectins,
chitinases and peritrophic membranes (cysCBD) and those
with the cuticular protein chitin-binding domain
(non-cysCBD).
Length = 51
Score = 53.8 bits (130), Expect = 4e-11
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 32 YKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88
Y F +ET +G +E ++ G +G SY PDG + ADE G+
Sbjct: 1 YSFGYETSDGKTQEEGRGTEDDGG------VVKGSYSYVDPDGKLRTVTYVADENGF 51
>gnl|CDD|204583 pfam11020, DUF2610, Domain of unknown function (DUF2610). This
family is conserved in Proteobacteria. One member is
annotated as being elongation factor P but this could
not be confirmed. This domain is related to the
Ribbon-helix-helix superfamily so may be a DNA-binding
protein.
Length = 82
Score = 26.6 bits (59), Expect = 1.9
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 72 PDGTPIQTQ--WYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQ 125
PD P+Q Q W + E G IP+++ +++ L +L ++N P
Sbjct: 26 PDTHPLQFQATWLSKERGGQ-----------IPEKVMDSLSKLHELAKKNGVPFED 70
>gnl|CDD|234162 TIGR03299, LGT_TIGR03299, phage/plasmid-like protein TIGR03299.
Members of this uncharacterized protein family are found
in various Mycobacterium phage genomes, in Streptomyces
coelicolor plasmid SCP1, and in bacterial genomes near
various markers that suggest lateral gene transfer. The
function is unknown [Mobile and extrachromosomal element
functions, Other].
Length = 309
Score = 27.4 bits (61), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 78 QTQWYADETGYHASGAHLPTPPPIPDEIAKA 108
+T Y E +H G HLP PI D+ A+A
Sbjct: 1 ETMAYVGEPAWHGLGNHLPGRQPI-DDWARA 30
>gnl|CDD|133469 cd01414, SAICAR_synt_Sc, non-metazoan
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. Eukaryotic,
bacterial, and archaeal group of SAICAR synthetases
represented by the Saccharomyces cerevisiae (Sc) enzyme,
mostly absent in metazoans. SAICAR synthetase catalyzes
the seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 279
Score = 27.1 bits (61), Expect = 3.2
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 80 QWYADETGYHASGAHLPTPPPIPDEIAKAIA 110
W +G+ P PPP+P E+ + +
Sbjct: 241 DWLE-ASGWDKQD---PPPPPLPAEVIEKTS 267
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 26.6 bits (59), Expect = 3.7
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 91 SGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQPAP 128
+ LP PP P EI +++E + +P P
Sbjct: 241 NNGRLPAPPGCPAEIY-------AIMKECWNNDPSQRP 271
>gnl|CDD|214755 smart00638, LPD_N, Lipoprotein N-terminal Domain.
Length = 574
Score = 26.1 bits (58), Expect = 6.4
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 30 GTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGYH 89
+ NG Q A+ + QK L ++ + S P + +
Sbjct: 220 EKVVVSPNIYNG-----QKAIVESRQK-LTLKSVKKTPSSPPPGEP--RNRGSLVYEFES 271
Query: 90 ASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQPAP 128
+ P + + L LV++ + +PA
Sbjct: 272 TNQQLPIRLLKAPSNEVQIVEVLKHLVQDIASDVQEPAA 310
>gnl|CDD|237570 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 341
Score = 25.8 bits (57), Expect = 7.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 96 PTPPPIPDEIAKAIATL 112
P PPP+PDE+ +A++ L
Sbjct: 296 PDPPPLPDEVVEAVSDL 312
>gnl|CDD|236191 PRK08224, ligC, ATP-dependent DNA ligase; Reviewed.
Length = 350
Score = 26.0 bits (58), Expect = 7.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 95 LPTPPPIPDEIAKAIATLP 113
LP PP+ +AK++ +P
Sbjct: 3 LPVMPPVEPMLAKSVDAIP 21
>gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed.
Length = 333
Score = 25.5 bits (57), Expect = 9.5
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 15/65 (23%)
Query: 46 EQGALKNAGQKDLEAQTAQGQSSYTSPDGTPI-QTQWYADETGYHASGAHLPTPPPIPDE 104
E L N + S G + +Y E Y A L P + +E
Sbjct: 213 ECAVLGNDPK--------------ASVPGEIVKPDDFYDYEAKYLDGSAELIIPADLSEE 258
Query: 105 IAKAI 109
+ + I
Sbjct: 259 LTEKI 263
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.131 0.394
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,191,368
Number of extensions: 624997
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 41
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.2 bits)