RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10193
         (135 letters)



>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 411

 Score = 28.5 bits (63), Expect = 0.27
 Identities = 8/42 (19%), Positives = 13/42 (30%)

Query: 69  YTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIA 110
               D       W   +  YH     +    P+   +A A+A
Sbjct: 362 ELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVA 403


>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
           {Escherichia coli [TaxId: 562]}
          Length = 200

 Score = 26.6 bits (58), Expect = 0.80
 Identities = 10/46 (21%), Positives = 12/46 (26%)

Query: 81  WYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQP 126
           W     GY  S     T  P P           +       P+ QP
Sbjct: 55  WTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQP 100


>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 261

 Score = 26.6 bits (57), Expect = 1.00
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 86  TGYHASGAHLPTPPPIPDEIAKAIATLPKLVE 117
           TG   +   L      PD + K +  L K V+
Sbjct: 231 TGET-TPEDLERAETKPDFVFKNLGELAKAVQ 261


>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score = 25.3 bits (55), Expect = 2.8
 Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 8/49 (16%)

Query: 84  DETGYHASGAHLPTPPP-------IP-DEIAKAIATLPKLVEENYAPNP 124
           DE GY      +P           IP   I      L + V +    + 
Sbjct: 9   DEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHH 57


>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
           {Thermus thermophilus [TaxId: 274]}
          Length = 107

 Score = 24.4 bits (53), Expect = 3.0
 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 10/43 (23%)

Query: 101 IPDEIAKAIATLPKLVEENYAPNPQ----------PAPGRGFG 133
           +P++  + +  +    E    P  +          P P   FG
Sbjct: 16  VPEDFKRGLQGVHVFPEAKPEPGLEGVWRLGEYLDPGPPSAFG 58


>d1xp4a1 b.105.1.1 (A:294-386) D,D-carboxypeptidase DacA, C-terminal
           domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 93

 Score = 23.7 bits (51), Expect = 6.3
 Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 2/34 (5%)

Query: 96  PTPPPIP--DEIAKAIATLPKLVEENYAPNPQPA 127
             P P+     +         L+ + Y    +P+
Sbjct: 57  AIPAPLEAGTVVGHLTYEDKDLIGQGYITTERPS 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0708    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,801
Number of extensions: 22541
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 10
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (22.3 bits)