BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10196
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 65/102 (63%), Gaps = 13/102 (12%)
Query: 16 SIAENSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNR 75
S+ S SS D + + T SD E DD C+ KKKHRRNR
Sbjct: 486 SLVNGSCASSEDLNQTNSSEQGEKITSGSDDEGQDDNCA-------------KKKHRRNR 532
Query: 76 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQF 117
TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 533 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 574
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 53/61 (86%)
Query: 56 GGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
GG PS KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV
Sbjct: 107 GGDGKPSDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 166
Query: 116 Q 116
Q
Sbjct: 167 Q 167
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 182
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 139 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 187
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 33 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 81
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 132 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 180
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 55/61 (90%), Gaps = 2/61 (3%)
Query: 56 GGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
GG LS +P KKKHRRNRTTFTT+QLHELERAFEKSHYPDVYSREELA+KVNLPEVRV
Sbjct: 93 GGKLSDDENP--KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRV 150
Query: 116 Q 116
Q
Sbjct: 151 Q 151
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 76/117 (64%), Gaps = 13/117 (11%)
Query: 13 QRASIAENSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGS-LSPSLSPVDK--- 68
Q++ + N + S E + D +K +V++ + +C + S SP++S D+
Sbjct: 16 QKSLMLNNYQHQSVVENEICDSYQKKDISVNNRELLMVKRCPKDSSEQSPAISEADETES 75
Query: 69 ---------KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMK++LPEVRVQ
Sbjct: 76 SPDQLSNCNKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQ 132
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA KVNLPEVRVQ
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA KVNLPEVRVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 182
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA KVNLPEVRVQ
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA KVNLPEVRVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQ 182
>sp|A1YG25|RAX2_PANPA Retina and anterior neural fold homeobox protein 2 OS=Pan paniscus
GN=RAX2 PE=3 SV=1
Length = 184
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|A2T711|RAX2_PANTR Retina and anterior neural fold homeobox protein 2 OS=Pan
troglodytes GN=RAX2 PE=3 SV=1
Length = 184
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|Q96IS3|RAX2_HUMAN Retina and anterior neural fold homeobox protein 2 OS=Homo sapiens
GN=RAX2 PE=1 SV=1
Length = 184
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|A1YEV8|RAX2_GORGO Retina and anterior neural fold homeobox protein 2 OS=Gorilla
gorilla gorilla GN=RAX2 PE=3 SV=1
Length = 184
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|Q7YRX0|RAX2_BOVIN Retina and anterior neural fold homeobox protein 2 OS=Bos taurus
GN=RAX2 PE=2 SV=1
Length = 184
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|Q94398|HM08_CAEEL Homeobox protein ceh-8 OS=Caenorhabditis elegans GN=ceh-8 PE=4 SV=3
Length = 276
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 66 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ KK RRNRTTFTT+QLH LE AF+K+HYPDVY+RE LA KV LPEVRVQ
Sbjct: 55 IADKKQRRNRTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQ 105
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 7/94 (7%)
Query: 28 EQAVSDLRRKPSD--TVDSDLEIDDDK---CSRGGSLSPSLSPVDKKKHRRNRTTFTTYQ 82
E+A D P D ++ +D ++ D + C GS S + K+K RR RTTFT+YQ
Sbjct: 169 EEACGDNSLSPKDEESLHNDGDVKDGEDSVCLSAGS--DSEEGMLKRKQRRYRTTFTSYQ 226
Query: 83 LHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
L ELERAF+K+HYPDV++REELAM+++L E RVQ
Sbjct: 227 LEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 260
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 33 DLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEK 92
+L P D D E D C GS S + K+K RR RTTFT+YQL ELERAF+K
Sbjct: 298 ELLLHPEDAEGKDGE--DSVCLSAGS--DSEEGLLKRKQRRYRTTFTSYQLEELERAFQK 353
Query: 93 SHYPDVYSREELAMKVNLPEVRVQ 116
+HYPDV++REELAM+++L E RVQ
Sbjct: 354 THYPDVFTREELAMRLDLTEARVQ 377
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 33 DLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEK 92
+L P D D E D C GS S + K+K RR RTTFT+YQL ELERAF+K
Sbjct: 294 ELLLHPEDAEGKDGE--DSVCLSAGS--DSEEGLLKRKQRRYRTTFTSYQLEELERAFQK 349
Query: 93 SHYPDVYSREELAMKVNLPEVRVQ 116
+HYPDV++REELAM+++L E RVQ
Sbjct: 350 THYPDVFTREELAMRLDLTEARVQ 373
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 33 DLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEK 92
+L P D D E D C GS S + K+K RR RTTFT+YQL ELERAF+K
Sbjct: 296 ELLLHPEDAEGKDGE--DSVCLSAGS--DSEEGLLKRKQRRYRTTFTSYQLEELERAFQK 351
Query: 93 SHYPDVYSREELAMKVNLPEVRVQ 116
+HYPDV++REELAM+++L E RVQ
Sbjct: 352 THYPDVFTREELAMRLDLTEARVQ 375
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 43/50 (86%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K K RRNRTTFT+YQL ELE+ F+K+HYPDVY+RE+LAM+ +L E RVQ
Sbjct: 196 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 245
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 43/50 (86%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K K RRNRTTFT+YQL ELE+ F+K+HYPDVY+RE+LAM+ +L E RVQ
Sbjct: 210 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 259
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 43/50 (86%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K K RRNRTTFT+YQL ELE+ F+K+HYPDVY+RE+LAM+ +L E RVQ
Sbjct: 198 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 247
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 43/49 (87%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR RTTFT+YQL ELERAF K+HYPDV++REELAM+V+L E RVQ
Sbjct: 209 KRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQ 257
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 14/96 (14%)
Query: 21 SGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTT 80
SG + S S P +SD E D+ K+K RR RTTFT+
Sbjct: 49 SGGAPSGASGASGGTNSPVSDGNSDCEADEY--------------APKRKQRRYRTTFTS 94
Query: 81 YQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+QL ELE+AF ++HYPDV++REELAMK+ L E R+Q
Sbjct: 95 FQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 130
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 12/111 (10%)
Query: 15 ASIAENSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPV-------- 66
A E + ++S Q D R P D S+++ C SLS LSP
Sbjct: 91 AEAEEKASKAASFPQLPVDCRGGPRDG-PSNVQASPGPCL--ASLSVPLSPGLPDSMELA 147
Query: 67 -DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K K RRNRTTF+T+QL ELE+ F+K+HYPDVY+RE+LA++ +L E RVQ
Sbjct: 148 KTKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 12/111 (10%)
Query: 15 ASIAENSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPV-------- 66
A E + ++S Q D R P D S+L+ C SL LSP
Sbjct: 91 AEAEEKTSKAASFPQLPLDCRGGPRDG-PSNLQGSPGPCL--ASLHLPLSPGLPDSMELA 147
Query: 67 -DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K K RRNRTTF+T+QL ELE+ F+K+HYPDVY+RE+LA++ +L E RVQ
Sbjct: 148 KNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 32 SDLRRKPSDTVDSDLE--IDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERA 89
S R+K S++V + E +D+ R S +PS K+K RR+RT FT +QL ELE+A
Sbjct: 128 SAARQKRSESVSTSDEDSPSEDRSDRKASPAPS-----KRKKRRHRTVFTAHQLEELEKA 182
Query: 90 FEKSHYPDVYSREELAMKVNLPEVRVQF 117
F ++HYPDVY+RE LAMK LPE R+Q
Sbjct: 183 FSEAHYPDVYAREMLAMKTELPEDRIQV 210
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 45 DLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREEL 104
D+ DDD S + + K+K RR+RT FT++QL ELE+AF ++HYPDVY+RE L
Sbjct: 125 DVYSDDDCLSGDRNDGKNSGNSQKRKKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREML 184
Query: 105 AMKVNLPEVRVQ 116
AMK LPE R+Q
Sbjct: 185 AMKTELPEDRIQ 196
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 94 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 94 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ
Sbjct: 193 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 241
>sp|Q9NZR4|VSX1_HUMAN Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2
Length = 365
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 35 RRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSH 94
R+K SD+V + E + SP+L K+K RR+RT FT +QL ELE+AF ++H
Sbjct: 131 RQKRSDSVSTSDEDSQSEDRNDLKASPTLG---KRKKRRHRTVFTAHQLEELEKAFSEAH 187
Query: 95 YPDVYSREELAMKVNLPEVRVQF 117
YPDVY+RE LA+K LPE R+Q
Sbjct: 188 YPDVYAREMLAVKTELPEDRIQV 210
>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
Length = 341
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR+RT FT++QL ELE+AF ++HYPDVY+RE LAMK LPE R+Q
Sbjct: 145 KRKKRRHRTVFTSHQLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQ 193
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ
Sbjct: 217 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 265
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 86 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 11/89 (12%)
Query: 30 AVSDLRRKPSDTVDSDLEIDD--DKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELE 87
++LR P + E+D+ DKC S V K RR+RTTFT+ QL ELE
Sbjct: 98 GCNNLRMSPVKGMPEKSELDELGDKCD---------SNVSSSKKRRHRTTFTSLQLEELE 148
Query: 88 RAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ F+K+HYPDVY RE+LA++ L E RVQ
Sbjct: 149 KVFQKTHYPDVYVREQLALRTELTEARVQ 177
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 31 VSDLRRKPSDTVDSDLEIDD--DKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELER 88
+ LR P + E+D+ DKC S V K RR+RTTFT+ QL ELE+
Sbjct: 99 CNSLRMSPVKGMQEKGELDELGDKCD---------SNVSSSKKRRHRTTFTSLQLEELEK 149
Query: 89 AFEKSHYPDVYSREELAMKVNLPEVRVQ 116
F+K+HYPDVY RE+LA++ L E RVQ
Sbjct: 150 VFQKTHYPDVYVREQLALRTELTEARVQ 177
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 86 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
++K RRNRTTFT QL LE F ++HYPDV++REELAMK+NL E RVQ
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
++K RRNRTTFT QL LE F ++HYPDV++REELAMK+NL E RVQ
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 86 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 40/49 (81%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR+RTTFT QL ELE+AFE++HYPD+Y+REELA + L E RVQ
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,177,268
Number of Sequences: 539616
Number of extensions: 6609020
Number of successful extensions: 29238
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 25786
Number of HSP's gapped (non-prelim): 3241
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)