Query psy10196
Match_columns 354
No_of_seqs 244 out of 1628
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 20:17:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 9.1E-20 3.1E-24 143.3 6.8 66 67-132 13-78 (80)
2 2kt0_A Nanog, homeobox protein 99.8 2.4E-19 8.2E-24 141.7 7.4 65 67-131 18-82 (84)
3 2da3_A Alpha-fetoprotein enhan 99.8 1.2E-19 4.3E-24 141.7 5.1 66 67-132 13-78 (80)
4 2cra_A Homeobox protein HOX-B1 99.8 1.8E-19 6.1E-24 138.2 5.8 65 68-132 4-68 (70)
5 1wh5_A ZF-HD homeobox family p 99.8 3.6E-19 1.2E-23 140.8 6.5 61 68-128 14-78 (80)
6 2da2_A Alpha-fetoprotein enhan 99.8 3.5E-19 1.2E-23 136.2 5.6 65 68-132 4-68 (70)
7 2djn_A Homeobox protein DLX-5; 99.8 3.6E-19 1.2E-23 136.5 5.3 64 68-131 4-67 (70)
8 2dms_A Homeobox protein OTX2; 99.8 4.9E-19 1.7E-23 139.0 6.0 67 68-134 4-70 (80)
9 2dmu_A Homeobox protein goosec 99.8 3.6E-19 1.2E-23 136.3 5.0 64 69-132 5-68 (70)
10 1wh7_A ZF-HD homeobox family p 99.8 6.3E-19 2.2E-23 139.6 6.2 60 68-128 14-78 (80)
11 2da1_A Alpha-fetoprotein enhan 99.8 3.7E-19 1.3E-23 136.1 4.6 65 68-132 4-68 (70)
12 1nk2_P Homeobox protein VND; h 99.7 6.5E-19 2.2E-23 137.5 5.3 67 68-134 6-72 (77)
13 2dmq_A LIM/homeobox protein LH 99.7 9.5E-19 3.2E-23 137.0 5.6 65 69-133 5-69 (80)
14 2vi6_A Homeobox protein nanog; 99.7 5.7E-19 1.9E-23 132.2 4.1 60 70-129 2-61 (62)
15 2l7z_A Homeobox protein HOX-A1 99.7 1.6E-18 5.4E-23 134.2 6.2 66 68-133 4-69 (73)
16 2e1o_A Homeobox protein PRH; D 99.7 1.2E-18 4E-23 133.6 5.0 64 69-132 5-68 (70)
17 1b72_A Protein (homeobox prote 99.7 5.6E-19 1.9E-23 143.6 3.4 93 20-131 2-94 (97)
18 2hdd_A Protein (engrailed home 99.7 6.7E-19 2.3E-23 131.4 3.5 59 71-129 3-61 (61)
19 1puf_A HOX-1.7, homeobox prote 99.7 1.3E-18 4.5E-23 135.8 5.2 65 67-131 9-73 (77)
20 2h1k_A IPF-1, pancreatic and d 99.7 8E-19 2.7E-23 131.9 3.5 60 70-129 2-61 (63)
21 2cue_A Paired box protein PAX6 99.7 1.2E-18 4E-23 137.0 4.2 63 69-131 5-67 (80)
22 1bw5_A ISL-1HD, insulin gene e 99.7 1.6E-18 5.5E-23 131.2 4.5 62 70-131 2-63 (66)
23 2da4_A Hypothetical protein DK 99.7 8.1E-19 2.8E-23 137.8 2.9 64 68-131 5-72 (80)
24 1ahd_P Antennapedia protein mu 99.7 1.3E-18 4.3E-23 133.0 3.8 63 71-133 2-64 (68)
25 1ig7_A Homeotic protein MSX-1; 99.7 1.6E-18 5.3E-23 127.9 4.0 57 72-128 1-57 (58)
26 2m0c_A Homeobox protein arista 99.7 3.2E-18 1.1E-22 132.0 5.6 64 68-131 6-69 (75)
27 1zq3_P PRD-4, homeotic bicoid 99.7 1.8E-18 6.1E-23 132.0 3.8 63 71-133 2-64 (68)
28 1fjl_A Paired protein; DNA-bin 99.7 1.8E-18 6.2E-23 136.0 3.9 64 68-131 15-78 (81)
29 3a01_A Homeodomain-containing 99.7 4E-18 1.4E-22 138.0 5.4 66 68-133 14-79 (93)
30 1jgg_A Segmentation protein EV 99.7 2.5E-18 8.6E-23 127.9 3.6 58 72-129 2-59 (60)
31 1ftt_A TTF-1 HD, thyroid trans 99.7 3.6E-18 1.2E-22 130.3 4.5 62 71-132 2-63 (68)
32 1yz8_P Pituitary homeobox 2; D 99.7 1.8E-18 6.2E-23 131.8 2.6 63 70-132 2-64 (68)
33 1b8i_A Ultrabithorax, protein 99.7 2.7E-18 9.2E-23 135.5 3.5 62 69-130 18-79 (81)
34 3rkq_A Homeobox protein NKX-2. 99.7 4E-18 1.4E-22 125.0 3.9 57 71-127 2-58 (58)
35 1akh_A Protein (mating-type pr 99.7 3.1E-18 1.1E-22 127.5 3.3 59 69-127 3-61 (61)
36 2r5y_A Homeotic protein sex co 99.7 3.5E-18 1.2E-22 136.5 3.5 63 68-130 25-87 (88)
37 2dn0_A Zinc fingers and homeob 99.7 1.1E-17 3.8E-22 130.2 6.0 63 71-133 8-70 (76)
38 3nar_A ZHX1, zinc fingers and 99.7 5.7E-18 2E-22 137.6 4.1 64 68-131 22-85 (96)
39 2ly9_A Zinc fingers and homeob 99.7 1.5E-17 5.1E-22 128.4 6.0 64 70-133 5-68 (74)
40 2k40_A Homeobox expressed in E 99.7 7.7E-18 2.6E-22 127.8 4.0 60 72-131 2-61 (67)
41 1uhs_A HOP, homeodomain only p 99.7 9.7E-18 3.3E-22 129.1 4.6 60 72-131 2-62 (72)
42 2hi3_A Homeodomain-only protei 99.7 1.1E-17 3.9E-22 129.2 4.6 60 72-131 3-63 (73)
43 2da5_A Zinc fingers and homeob 99.7 2E-17 7E-22 128.7 5.7 60 73-132 9-68 (75)
44 1x2n_A Homeobox protein pknox1 99.7 1.7E-17 5.8E-22 127.9 5.1 65 68-132 4-71 (73)
45 3a02_A Homeobox protein arista 99.7 9E-18 3.1E-22 124.9 3.3 57 74-130 2-58 (60)
46 2ecc_A Homeobox and leucine zi 99.7 1.2E-17 4.2E-22 131.5 4.2 60 74-133 6-65 (76)
47 2cuf_A FLJ21616 protein; homeo 99.7 1.6E-17 5.3E-22 134.6 4.6 65 68-132 4-83 (95)
48 3a03_A T-cell leukemia homeobo 99.7 9.2E-18 3.2E-22 123.5 2.9 54 76-129 2-55 (56)
49 1wi3_A DNA-binding protein SAT 99.7 4.6E-17 1.6E-21 125.8 4.8 60 68-127 4-64 (71)
50 1au7_A Protein PIT-1, GHF-1; c 99.7 3.3E-17 1.1E-21 142.7 3.8 62 68-129 84-145 (146)
51 1du6_A PBX1, homeobox protein 99.7 3.7E-17 1.3E-21 122.9 3.6 59 71-129 3-64 (64)
52 2cqx_A LAG1 longevity assuranc 99.7 1.8E-17 6.3E-22 128.5 1.8 60 72-131 9-69 (72)
53 1puf_B PRE-B-cell leukemia tra 99.6 5.2E-17 1.8E-21 125.2 4.0 63 72-134 2-67 (73)
54 1e3o_C Octamer-binding transcr 99.6 5.4E-17 1.9E-21 143.1 3.9 62 68-129 98-159 (160)
55 2xsd_C POU domain, class 3, tr 99.6 5.7E-17 1.9E-21 143.9 3.7 65 68-132 96-160 (164)
56 2dmn_A Homeobox protein TGIF2L 99.6 1.7E-16 5.8E-21 125.9 5.8 65 69-133 5-72 (83)
57 2ecb_A Zinc fingers and homeob 99.6 1.6E-16 5.5E-21 128.5 5.2 55 77-131 17-71 (89)
58 2dmp_A Zinc fingers and homeob 99.6 3E-16 1E-20 126.1 6.8 55 78-132 20-74 (89)
59 1b72_B Protein (PBX1); homeodo 99.6 9.8E-17 3.4E-21 127.4 3.5 62 72-133 2-66 (87)
60 1k61_A Mating-type protein alp 99.6 1.2E-16 4.3E-21 118.5 3.8 55 75-129 2-59 (60)
61 3d1n_I POU domain, class 6, tr 99.6 2.1E-16 7.3E-21 137.8 4.9 61 68-128 90-150 (151)
62 1lfb_A Liver transcription fac 99.6 1.4E-16 4.8E-21 131.0 3.5 65 67-131 5-90 (99)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 2.7E-16 9.1E-21 125.3 4.5 60 69-128 25-87 (87)
64 2l9r_A Homeobox protein NKX-3. 99.6 3.6E-16 1.2E-20 120.7 4.7 56 76-131 9-64 (69)
65 1le8_B Mating-type protein alp 99.6 3.1E-16 1.1E-20 124.2 4.0 59 72-130 3-64 (83)
66 3nau_A Zinc fingers and homeob 99.6 1.8E-16 6.2E-21 121.8 2.3 52 79-130 12-63 (66)
67 2da6_A Hepatocyte nuclear fact 99.6 3.2E-16 1.1E-20 129.8 3.9 64 68-131 3-87 (102)
68 2d5v_A Hepatocyte nuclear fact 99.6 3.2E-16 1.1E-20 138.1 4.1 67 68-134 94-160 (164)
69 2e19_A Transcription factor 8; 99.6 4.3E-16 1.5E-20 118.3 3.6 54 76-129 8-61 (64)
70 1x2m_A LAG1 longevity assuranc 99.6 3.5E-16 1.2E-20 119.5 2.9 52 80-131 9-61 (64)
71 3l1p_A POU domain, class 5, tr 99.6 4.9E-16 1.7E-20 136.4 2.5 61 69-129 94-154 (155)
72 3k2a_A Homeobox protein MEIS2; 99.5 1.9E-14 6.5E-19 109.9 3.1 56 77-132 4-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 1.8E-14 6E-19 131.5 2.3 62 67-128 111-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.3 4.6E-13 1.6E-17 124.2 3.7 61 66-126 137-218 (221)
75 1mh3_A Maltose binding-A1 home 99.3 1.2E-12 4.2E-17 126.3 3.1 57 71-127 365-421 (421)
76 2da7_A Zinc finger homeobox pr 99.3 1.3E-12 4.6E-17 101.3 2.7 46 80-125 14-59 (71)
77 2lk2_A Homeobox protein TGIF1; 99.2 9.1E-12 3.1E-16 100.8 2.6 56 76-131 10-68 (89)
78 2nzz_A Penetratin conjugated G 98.5 1.8E-08 6.1E-13 69.1 0.4 21 113-133 1-21 (37)
79 2ys9_A Homeobox and leucine zi 89.7 0.16 5.4E-06 39.2 2.2 39 83-121 18-56 (70)
80 2rgt_A Fusion of LIM/homeobox 52.2 0.24 8.1E-06 42.7 -7.1 31 69-99 134-164 (169)
81 2elh_A CG11849-PA, LD40883P; s 49.1 27 0.00093 26.3 5.1 46 71-121 16-61 (87)
82 1hlv_A CENP-B, major centromer 45.3 17 0.00058 28.9 3.5 48 74-124 4-51 (131)
83 2glo_A Brinker CG9653-PA; prot 42.4 17 0.00059 25.4 2.8 46 75-121 3-48 (59)
84 3hug_A RNA polymerase sigma fa 36.1 10 0.00036 28.7 0.8 49 78-131 38-86 (92)
85 1wh7_A ZF-HD homeobox family p 36.0 13 0.00045 28.4 1.4 31 11-41 48-78 (80)
86 1jko_C HIN recombinase, DNA-in 33.3 18 0.00063 23.4 1.6 42 78-124 6-47 (52)
87 2ecb_A Zinc fingers and homeob 31.7 6.5 0.00022 31.0 -1.1 31 11-41 38-68 (89)
88 2dms_A Homeobox protein OTX2; 29.7 5.5 0.00019 30.1 -1.8 32 11-42 34-65 (80)
89 1wh5_A ZF-HD homeobox family p 29.3 11 0.00038 28.7 -0.1 31 11-41 48-78 (80)
90 1tc3_C Protein (TC3 transposas 26.0 46 0.0016 20.8 2.6 40 77-121 5-44 (51)
91 3i5g_B Myosin regulatory light 24.8 1.2E+02 0.0041 24.6 5.6 39 75-113 7-50 (153)
92 2dmp_A Zinc fingers and homeob 24.1 9.7 0.00033 29.6 -1.3 31 11-41 40-70 (89)
93 2o8x_A Probable RNA polymerase 22.9 32 0.0011 23.9 1.4 49 77-130 15-63 (70)
94 2lv7_A Calcium-binding protein 22.9 80 0.0027 24.2 3.9 46 75-120 27-79 (100)
95 2qko_A Possible transcriptiona 22.8 40 0.0014 28.1 2.2 38 85-123 36-73 (215)
96 1p4w_A RCSB; solution structur 21.8 53 0.0018 25.8 2.6 45 75-125 32-76 (99)
97 1iuf_A Centromere ABP1 protein 21.0 88 0.003 25.8 4.0 48 72-122 6-60 (144)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-20 Score=143.31 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=61.7
Q ss_pred ccCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 67 ~~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
..++.||.||.||..|+.+||..|+.++||+..+|++||..|||++.||+|||||||+|+|+....
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~s 78 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCC
Confidence 356778899999999999999999999999999999999999999999999999999999987653
No 2
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=141.66 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=60.8
Q ss_pred ccCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 67 ~~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
...+.||.||.||..|+.+||..|..++||+..+|.+||..|||++.+|+|||||||+|+|+...
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999999999999999999999999999999988653
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-19 Score=141.72 Aligned_cols=66 Identities=23% Similarity=0.183 Sum_probs=61.4
Q ss_pred ccCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 67 ~~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
...+.||.||.||.+|+.+||..|..++||+..+|++||..|||++.||+|||||||+|+|+....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 346678899999999999999999999999999999999999999999999999999999887653
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.8e-19 Score=138.15 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=60.6
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
..+.||.||.||..|+.+||..|+.++||+..+|++||..|||++.||+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 35578899999999999999999999999999999999999999999999999999999987653
No 5
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=3.6e-19 Score=140.75 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=58.1
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHcCCCCcccccccchhhhcccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEK----SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGV 128 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~----~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk 128 (354)
.+++||.||.||.+|+.+||..|+. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4568889999999999999999999 999999999999999999999999999999999875
No 6
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-19 Score=136.18 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=60.8
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
..+.||.||.||..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 45678899999999999999999999999999999999999999999999999999999987654
No 7
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-19 Score=136.47 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=60.1
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
..+.||.||.||..|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4457889999999999999999999999999999999999999999999999999999998764
No 8
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.9e-19 Score=138.98 Aligned_cols=67 Identities=42% Similarity=0.562 Sum_probs=62.0
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccCC
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATFG 134 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~~ 134 (354)
.++.||.||.||..|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+......
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 4567889999999999999999999999999999999999999999999999999999988776443
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-19 Score=136.29 Aligned_cols=64 Identities=38% Similarity=0.468 Sum_probs=60.0
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
.+.||.||.||..|+.+||..|+.++||+..+|++||..|||++.||+|||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 4578889999999999999999999999999999999999999999999999999999887653
No 10
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=6.3e-19 Score=139.64 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=56.9
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcCCCCcccccccchhhhcccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEK-----SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGV 128 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~-----~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk 128 (354)
..++||.||.||.+|+.+|| .|.. ++||+..+|++||..|||+++||||||||||+|+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678899999999999999 8999 999999999999999999999999999999999886
No 11
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-19 Score=136.07 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=60.6
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
.++.+|.||.||..|+..||..|+.++||+..++.+||..|||++.+|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 45678899999999999999999999999999999999999999999999999999999887653
No 12
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.75 E-value=6.5e-19 Score=137.50 Aligned_cols=67 Identities=30% Similarity=0.349 Sum_probs=61.5
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccCC
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATFG 134 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~~ 134 (354)
.+++||.||.||..|+..||..|..++||+..+|.+||..|||++.||+|||||||+|+|+.....+
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 4567888999999999999999999999999999999999999999999999999999988765443
No 13
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.5e-19 Score=137.03 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=60.6
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
.+.||.||.||..|+..||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999998876544
No 14
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=5.7e-19 Score=132.20 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=52.9
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 70 K~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
+.+|.||.||..|+..||..|..++||+..+|.+||..+||++.+|+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999875
No 15
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=1.6e-18 Score=134.17 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=61.5
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
..+.||.||.||..|+..||..|..++||+..+|.+||..+||++.||+|||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 356788999999999999999999999999999999999999999999999999999999877654
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.2e-18 Score=133.62 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=59.3
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
.+.++.|+.||..|+.+||..|+.++||+..++.+||..|||++.||+|||||||+|+|+....
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 3467789999999999999999999999999999999999999999999999999999887653
No 17
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=5.6e-19 Score=143.63 Aligned_cols=93 Identities=23% Similarity=0.254 Sum_probs=63.7
Q ss_pred hcCCCCCchhhhcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccCCCCCCCCccCHHHHHHHHHHHHhcCCCCHH
Q psy10196 20 NSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVY 99 (354)
Q Consensus 20 ~~g~~ss~eq~~s~~k~~~s~~~~s~se~~~~~~s~g~s~s~~~~~~~~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~ 99 (354)
++++++..+..|+...+......... .....+.+|.||.||..|+..||..|..++||+..
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~~-------------------~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~ 62 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKVS-------------------EPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRA 62 (97)
T ss_dssp ------CCCCGGGGC---------------------------------------CCCCCCHHHHHHHHHHHTTCSSCCHH
T ss_pred CCCCCCcccccccccccCCCCCCCCC-------------------CCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHH
Confidence 35677778888998877664322100 01123567889999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 100 SREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 100 ~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
+|.+||..|||+++||+|||||||+|+|+...
T Consensus 63 ~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 63 RRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 99999999999999999999999999988764
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.74 E-value=6.7e-19 Score=131.41 Aligned_cols=59 Identities=24% Similarity=0.415 Sum_probs=53.5
Q ss_pred CCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
.||.||.||..|+..||..|+.++||+..++.+||..+||++.+|+|||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 57889999999999999999999999999999999999999999999999999998863
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.74 E-value=1.3e-18 Score=135.77 Aligned_cols=65 Identities=25% Similarity=0.263 Sum_probs=60.5
Q ss_pred ccCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 67 ~~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
..++.+|.||.||..|+.+||..|..++||+..+|++||..|||++.||+|||||||+|+|+...
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 45667889999999999999999999999999999999999999999999999999999987654
No 20
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.73 E-value=8e-19 Score=131.94 Aligned_cols=60 Identities=30% Similarity=0.365 Sum_probs=55.6
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 70 K~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
+.||.||.||..|+..||..|..++||+..+|.+||..|||++.+|+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 367889999999999999999999999999999999999999999999999999999875
No 21
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.2e-18 Score=136.98 Aligned_cols=63 Identities=41% Similarity=0.652 Sum_probs=59.2
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
.+.||.||.||..|+.+||..|..++||+..+|.+||..|||++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999999999999999999999999887653
No 22
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=1.6e-18 Score=131.23 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=58.7
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 70 K~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
+.+|.||.||..|+..||..|+.++||+..++.+||..+||++.+|+|||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46889999999999999999999999999999999999999999999999999999988653
No 23
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.1e-19 Score=137.75 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=60.0
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKS----HYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~----~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
.++.||.||.||.+|+.+||..|..+ +||+..+|++||..|||++.||+|||||||+|+|+...
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 45678899999999999999999999 99999999999999999999999999999999988654
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.73 E-value=1.3e-18 Score=132.98 Aligned_cols=63 Identities=27% Similarity=0.335 Sum_probs=59.0
Q ss_pred CCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
+||.||.||..|+..||..|..++||+..+|.+||..|||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 478899999999999999999999999999999999999999999999999999998876543
No 25
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.6e-18 Score=127.88 Aligned_cols=57 Identities=32% Similarity=0.440 Sum_probs=55.1
Q ss_pred CCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccc
Q psy10196 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGV 128 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk 128 (354)
||.||.||..|+..||..|+.++||+..++.+||..+||++.+|+|||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999876
No 26
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-18 Score=131.98 Aligned_cols=64 Identities=53% Similarity=0.772 Sum_probs=60.0
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
.++++|.||.||..|+..||..|..++||+..++.+||..|||++.+|+|||||||+|+|+...
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999999999999999999999988654
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=1.8e-18 Score=132.03 Aligned_cols=63 Identities=29% Similarity=0.336 Sum_probs=59.3
Q ss_pred CCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
.||.||.||..|+..||..|..++||+..+|.+||..|||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 578899999999999999999999999999999999999999999999999999998876543
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.72 E-value=1.8e-18 Score=136.02 Aligned_cols=64 Identities=50% Similarity=0.758 Sum_probs=59.3
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
.++.||.||.||..|+..||..|..++||+..+|.+||..|||++.||+|||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 5678889999999999999999999999999999999999999999999999999999988654
No 29
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.71 E-value=4e-18 Score=138.00 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=61.3
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
..+.||.||.||..|+..||..|..++||+..+|.+||..|||++.+|+|||||||+|+|+.....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 456788999999999999999999999999999999999999999999999999999998876543
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=2.5e-18 Score=127.88 Aligned_cols=58 Identities=36% Similarity=0.436 Sum_probs=55.3
Q ss_pred CCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
||.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999998875
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=3.6e-18 Score=130.29 Aligned_cols=62 Identities=26% Similarity=0.365 Sum_probs=58.6
Q ss_pred CCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
+||.||.||..|+..||..|..++||+..++.+||..|||++.+|+|||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 57889999999999999999999999999999999999999999999999999999887653
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.71 E-value=1.8e-18 Score=131.84 Aligned_cols=63 Identities=37% Similarity=0.513 Sum_probs=59.3
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 70 K~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
+.||.||.||..|+..||..|..++||+..++.+||..|||++.+|+|||||||+|+|+....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 468889999999999999999999999999999999999999999999999999999887653
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=2.7e-18 Score=135.47 Aligned_cols=62 Identities=31% Similarity=0.448 Sum_probs=54.6
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccc
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAI 130 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~ 130 (354)
.+.||.||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45678899999999999999999999999999999999999999999999999999998864
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.71 E-value=4e-18 Score=124.99 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=54.7
Q ss_pred CCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccc
Q psy10196 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVG 127 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~K 127 (354)
+||.||.||..|+..||..|..++||+..++.+||..|||++.||+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999875
No 35
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=3.1e-18 Score=127.49 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=48.5
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccc
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVG 127 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~K 127 (354)
++.+|.|+.||..|+..||..|..++||+..++.+||..+||++.||+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 56788999999999999999999999999999999999999999999999999999975
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.70 E-value=3.5e-18 Score=136.53 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=55.2
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAI 130 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~ 130 (354)
..+.||.||.||..|+.+||..|+.++||+..+|++||..|||++++|+|||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 345788899999999999999999999999999999999999999999999999999998753
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=130.17 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=57.8
Q ss_pred CCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
..+.|+.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+|+.....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 344589999999999999999999999999999999999999999999999999998876543
No 38
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.70 E-value=5.7e-18 Score=137.57 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=56.6
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
....+|.|+.||..|+.+||..|+.++||+..+|++||..|||+++||+|||||||+|+|+...
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 3456778999999999999999999999999999999999999999999999999999988653
No 39
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=128.40 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=59.3
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 70 K~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
..++.||.||..|+.+||..|+.++||+..+|++||..+||+++||+|||||||+|+|+.....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 3567899999999999999999999999999999999999999999999999999999876543
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-18 Score=127.84 Aligned_cols=60 Identities=33% Similarity=0.406 Sum_probs=57.5
Q ss_pred CCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
||.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678999999999999999999999999999999999999999999999999999988765
No 41
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=9.7e-18 Score=129.11 Aligned_cols=60 Identities=22% Similarity=0.113 Sum_probs=56.5
Q ss_pred CCCCCccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 72 RRNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F~~-~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
.+.||.||..|+.+||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 467899999999999999996 999999999999999999999999999999999988764
No 42
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.1e-17 Score=129.18 Aligned_cols=60 Identities=20% Similarity=0.065 Sum_probs=56.6
Q ss_pred CCCCCccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 72 RRNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F~~-~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
++.||.||..|+.+||..|+. ++||+..+|.+||..+||++++|+|||||||+|+|+...
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999995 999999999999999999999999999999999988764
No 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=128.65 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=55.3
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 73 RNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 73 R~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
++|+.||..|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 345679999999999999999999999999999999999999999999999999887653
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.7e-17 Score=127.91 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=59.9
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~---~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
.++.++.|+.|+..|+.+||..|.. ++||+..+|++||..+||++.||+|||||||+|+|+....
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3467888999999999999999987 9999999999999999999999999999999999887653
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.68 E-value=9e-18 Score=124.89 Aligned_cols=57 Identities=46% Similarity=0.716 Sum_probs=50.6
Q ss_pred CCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccc
Q psy10196 74 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAI 130 (354)
Q Consensus 74 ~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~ 130 (354)
.||.||..|+..||..|..++||+..+|.+||..+||++.+|+|||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 479999999999999999999999999999999999999999999999999998764
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.2e-17 Score=131.52 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=55.5
Q ss_pred CCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 74 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 74 ~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
.|+.||.+|+.+||..|..++||+..+|++||..|||+++||+|||||||+|+|+.....
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 355699999999999999999999999999999999999999999999999998876544
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.6e-17 Score=134.63 Aligned_cols=65 Identities=23% Similarity=0.255 Sum_probs=61.3
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC---------------CCCcccccccchhhhcccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN---------------LPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~Lg---------------Lse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
.+++||.|+.||..|+.+||..|+.++||+..+|++||..|| |++.+|+|||||||+|+|+....
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999999999999999999999999999 99999999999999999887764
No 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.68 E-value=9.2e-18 Score=123.48 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=50.9
Q ss_pred CccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 76 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 76 T~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
|.||..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999875
No 49
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=4.6e-17 Score=125.84 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=56.1
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCCCcccccccchhhhccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVG 127 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~-~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~K 127 (354)
.++.||.||.|+.+||..|+..|+. ++||+...|+.||.+|||++++|||||||||.-.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467899999999999999999999 99999999999999999999999999999997544
No 50
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.65 E-value=3.3e-17 Score=142.73 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=55.7
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
.+++||.||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 35678889999999999999999999999999999999999999999999999999999875
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=3.7e-17 Score=122.85 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCCCCccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 71 HRRNRTTFTTYQLHELERAF---EKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F---~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
.++.|+.|+..|+..||..| ..++||+..++.+||..+||++.||++||||||+|+|+.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 57789999999999999999 899999999999999999999999999999999999873
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.8e-17 Score=128.52 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=55.0
Q ss_pred CCCCCccCHHHHHHHHHHH-HhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 72 RRNRTTFTTYQLHELERAF-EKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F-~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
.+.|+.++..|+.+||..| ..++||+..+|++||..|||+++||+|||||||+|+|+...
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~ 69 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCC
Confidence 4455667899999999999 99999999999999999999999999999999999998764
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=5.2e-17 Score=125.17 Aligned_cols=63 Identities=27% Similarity=0.318 Sum_probs=58.9
Q ss_pred CCCCCccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccCC
Q psy10196 72 RRNRTTFTTYQLHELERAF---EKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATFG 134 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F---~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~~ 134 (354)
||.|+.||..|+..||..| ..++||+..++..||..+||++.||+|||||||+|+|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 6789999999999999999 89999999999999999999999999999999999988776543
No 54
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.64 E-value=5.4e-17 Score=143.10 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=54.9
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
..++||.||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678899999999999999999999999999999999999999999999999999999875
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.64 E-value=5.7e-17 Score=143.91 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=52.7
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
.+++||.||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45678899999999999999999999999999999999999999999999999999999987754
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-16 Score=125.92 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=59.1
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~---~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
.++|+.|+.|+..|+.+|+..|.. ++||+..+|++||..+||++.||+|||||||+|+++.....
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 457788999999999999999988 59999999999999999999999999999999998776543
No 57
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.6e-16 Score=128.48 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=52.1
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 77 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 77 ~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
.||.+||.+||..|..++||+..+|++||..|||+++||+|||||||+||++...
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999877544
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=126.11 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 78 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 78 fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
||..||.+||..|..++||+..+|++||..|||++++|+|||||||+|+++....
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 8999999999999999999999999999999999999999999999998776543
No 59
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.63 E-value=9.8e-17 Score=127.39 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=57.6
Q ss_pred CCCCCccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccC
Q psy10196 72 RRNRTTFTTYQLHELERAF---EKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F---~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
||.|+.|+..|+.+||..| ..++||+..+|.+||..+||++.||+|||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 8999999999999999999999999999999999998876543
No 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.63 E-value=1.2e-16 Score=118.54 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 75 RTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 75 RT~fT~~Ql~~LE~~F~~---~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
|+.||..|+.+||..|.. ++||+..++.+||..+||++.||++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 9999999999999999999999999999999999875
No 61
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.62 E-value=2.1e-16 Score=137.83 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=58.0
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGV 128 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk 128 (354)
..++||.||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3467889999999999999999999999999999999999999999999999999999986
No 62
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.62 E-value=1.4e-16 Score=131.02 Aligned_cols=65 Identities=26% Similarity=0.246 Sum_probs=53.7
Q ss_pred ccCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------------cC---CCCcccccccchhhhc
Q psy10196 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMK------------------VN---LPEVRVQFTALAAALR 125 (354)
Q Consensus 67 ~~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~------------------Lg---Lse~qVqVWFQNRRaK 125 (354)
..++.||.||.||..|+.+||..|+.++||+..+|++||.. || |++.+|+|||||||+|
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 35678899999999999999999999999999999999999 88 9999999999999998
Q ss_pred cccccc
Q psy10196 126 VGVAIA 131 (354)
Q Consensus 126 ~Kk~~~ 131 (354)
.|++..
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 876543
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=2.7e-16 Score=125.31 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=56.0
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCCCcccccccchhhhcccc
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGV 128 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~---~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk 128 (354)
.++++.|+.|+..|+.+||..|.. ++||+..+|.+||..+||++.||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 445667999999999999999999 999999999999999999999999999999999873
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=120.74 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=53.0
Q ss_pred CccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 76 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 76 T~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
..+|..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 46799999999999999999999999999999999999999999999999988654
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.60 E-value=3.1e-16 Score=124.15 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCCCCccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccc
Q psy10196 72 RRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAI 130 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F~~---~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~ 130 (354)
++.|++||..|+..||..|.. ++||+..+|.+||..+||++.||+|||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 344666999999999999999 99999999999999999999999999999999998864
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=121.76 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccc
Q psy10196 79 TTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAI 130 (354)
Q Consensus 79 T~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~ 130 (354)
|..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+|+.+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 7999999999999999999999999999999999999999999999998754
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-16 Score=129.80 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=59.4
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHc---------------------CCCCcccccccchhhhcc
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKV---------------------NLPEVRVQFTALAAALRV 126 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~L---------------------gLse~qVqVWFQNRRaK~ 126 (354)
.+++||.||.|+..|+.+||..|+.++||+..+|++||..| +|++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35688999999999999999999999999999999999999 799999999999999998
Q ss_pred ccccc
Q psy10196 127 GVAIA 131 (354)
Q Consensus 127 Kk~~~ 131 (354)
|++..
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 77654
No 68
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.60 E-value=3.2e-16 Score=138.06 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=55.2
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccccCC
Q psy10196 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIATFG 134 (354)
Q Consensus 68 ~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~~~ 134 (354)
..+.||.||.||..|+..||..|+.++||+..+|++||..|||+++||+|||||||+|+|+.....+
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~~ 160 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEHH 160 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-----
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCCC
Confidence 4567889999999999999999999999999999999999999999999999999999998766443
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.3e-16 Score=118.30 Aligned_cols=54 Identities=17% Similarity=-0.011 Sum_probs=50.4
Q ss_pred CccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 76 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 76 T~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
..++..|+..||..|..++||+..+|.+||..|||++++|+|||||||+|.++.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 345799999999999999999999999999999999999999999999998763
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=3.5e-16 Score=119.49 Aligned_cols=52 Identities=15% Similarity=0.026 Sum_probs=47.9
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 80 TYQLHELERAF-EKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 80 ~~Ql~~LE~~F-~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
..|+.+||..| ..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~ 61 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGP 61 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCC
Confidence 45799999999 56999999999999999999999999999999999997654
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.57 E-value=4.9e-16 Score=136.43 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=57.4
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccc
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVA 129 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~ 129 (354)
.++||.||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4567889999999999999999999999999999999999999999999999999999874
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=1.9e-14 Score=109.88 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=50.6
Q ss_pred ccCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccccc
Q psy10196 77 TFTTYQLHELERAFE---KSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132 (354)
Q Consensus 77 ~fT~~Ql~~LE~~F~---~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~~ 132 (354)
.|+.+|+..|+..|. .++||+..+|++||..+||++.||++||||||+|.|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 589999999999999 99999999999999999999999999999999999887653
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.44 E-value=1.8e-14 Score=131.45 Aligned_cols=62 Identities=29% Similarity=0.283 Sum_probs=53.9
Q ss_pred ccCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC---------------------CCCcccccccchhhhc
Q psy10196 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN---------------------LPEVRVQFTALAAALR 125 (354)
Q Consensus 67 ~~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~Lg---------------------Lse~qVqVWFQNRRaK 125 (354)
..++.||.||.|+..|+.+||+.|+.++||+..+|++||..+| |++.+|+|||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4577889999999999999999999999999999999999999 9999999999999998
Q ss_pred ccc
Q psy10196 126 VGV 128 (354)
Q Consensus 126 ~Kk 128 (354)
.|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.32 E-value=4.6e-13 Score=124.24 Aligned_cols=61 Identities=28% Similarity=0.285 Sum_probs=53.8
Q ss_pred CccCCCCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC---------------------CCCcccccccchhhh
Q psy10196 66 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN---------------------LPEVRVQFTALAAAL 124 (354)
Q Consensus 66 ~~~kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~Lg---------------------Lse~qVqVWFQNRRa 124 (354)
...++.||.|+.|+..|+.+||..|..++||+..+|++||..+| |++.+|++||||||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34677899999999999999999999999999999999999987 899999999999998
Q ss_pred cc
Q psy10196 125 RV 126 (354)
Q Consensus 125 K~ 126 (354)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=1.2e-12 Score=126.28 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=53.9
Q ss_pred CCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccc
Q psy10196 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVG 127 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~K 127 (354)
.++.|+.|+..|+.+||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 456678899999999999999999999999999999999999999999999999986
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=101.28 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhc
Q psy10196 80 TYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALR 125 (354)
Q Consensus 80 ~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK 125 (354)
.+|+..||.+|..+++|+..++..||..+||++++|||||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.16 E-value=9.1e-12 Score=100.77 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=52.0
Q ss_pred CccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 76 TTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 76 T~fT~~Ql~~LE~~F~~---~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
..|+..++..|+.-|.. ++||+..+|.+||..+||++.||++||||+|.|.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 56899999999999988 999999999999999999999999999999999877653
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.49 E-value=1.8e-08 Score=69.09 Aligned_cols=21 Identities=0% Similarity=-0.116 Sum_probs=18.4
Q ss_pred cccccccchhhhccccccccC
Q psy10196 113 VRVQFTALAAALRVGVAIATF 133 (354)
Q Consensus 113 ~qVqVWFQNRRaK~Kk~~~~~ 133 (354)
+||+|||||||+|||+.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987653
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.66 E-value=0.16 Score=39.20 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccch
Q psy10196 83 LHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALA 121 (354)
Q Consensus 83 l~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQN 121 (354)
.+.|+.+|...+.+.......|+.+..|+..||+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 367999999999999999999999999999999999954
No 80
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=52.17 E-value=0.24 Score=42.74 Aligned_cols=31 Identities=3% Similarity=-0.077 Sum_probs=22.1
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhcCCCCHH
Q psy10196 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVY 99 (354)
Q Consensus 69 kK~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~ 99 (354)
.+.||.||.|+..|++.|+..|+.++||+..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 4578899999999999999999999998753
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=49.12 E-value=27 Score=26.34 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=32.6
Q ss_pred CCCCCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccch
Q psy10196 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALA 121 (354)
Q Consensus 71 ~RR~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQN 121 (354)
+++.+..|+.++.......+... . ...++|..+|++...|.-|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34456678988866555555432 2 3568899999999999999743
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=45.35 E-value=17 Score=28.95 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=37.0
Q ss_pred CCCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhh
Q psy10196 74 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAAL 124 (354)
Q Consensus 74 ~RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRa 124 (354)
.|..||.++...+-..+..+.... ..++|..+|++...|.-|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 467899999888877775554432 347899999999999999877654
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=42.44 E-value=17 Score=25.40 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=30.9
Q ss_pred CCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccch
Q psy10196 75 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALA 121 (354)
Q Consensus 75 RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQN 121 (354)
|..||.+....+...+... ........++|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 3458888776664444433 221122568999999999999999643
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=36.14 E-value=10 Score=28.75 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=34.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhccccccc
Q psy10196 78 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIA 131 (354)
Q Consensus 78 fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~~ 131 (354)
++..|...|...|... ..-.++|..+|+++..|+.+...-|.|-++...
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665544322 356789999999999999998777766655543
No 85
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=36.02 E-value=13 Score=28.44 Aligned_cols=31 Identities=3% Similarity=-0.052 Sum_probs=27.3
Q ss_pred CchhhhhhhhcCCCCCchhhhcccCCCCCCC
Q psy10196 11 LSQRASIAENSGNSSSDEQAVSDLRRKPSDT 41 (354)
Q Consensus 11 ~Ssr~~lae~~g~~ss~eq~~s~~k~~~s~~ 41 (354)
...+..|+..++..+..+++||++++.....
T Consensus 48 ~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 48 DVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred HHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 5788999999999999999999999887543
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.29 E-value=18 Score=23.36 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhh
Q psy10196 78 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAAL 124 (354)
Q Consensus 78 fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRa 124 (354)
++.++...+...+... ....++|..+|++...|.-|+.....
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 4555555554444432 24568999999999999999865444
No 87
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.72 E-value=6.5 Score=31.05 Aligned_cols=31 Identities=6% Similarity=-0.006 Sum_probs=26.0
Q ss_pred CchhhhhhhhcCCCCCchhhhcccCCCCCCC
Q psy10196 11 LSQRASIAENSGNSSSDEQAVSDLRRKPSDT 41 (354)
Q Consensus 11 ~Ssr~~lae~~g~~ss~eq~~s~~k~~~s~~ 41 (354)
..++..|+...+..+.++++||++++.....
T Consensus 38 ~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 38 DEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 4578889999999999999999998865433
No 88
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.69 E-value=5.5 Score=30.07 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=26.7
Q ss_pred CchhhhhhhhcCCCCCchhhhcccCCCCCCCC
Q psy10196 11 LSQRASIAENSGNSSSDEQAVSDLRRKPSDTV 42 (354)
Q Consensus 11 ~Ssr~~lae~~g~~ss~eq~~s~~k~~~s~~~ 42 (354)
..++..|+..++.....+++||++++......
T Consensus 34 ~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 34 IFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 35688999999999999999999888765443
No 89
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=29.29 E-value=11 Score=28.74 Aligned_cols=31 Identities=3% Similarity=-0.039 Sum_probs=26.9
Q ss_pred CchhhhhhhhcCCCCCchhhhcccCCCCCCC
Q psy10196 11 LSQRASIAENSGNSSSDEQAVSDLRRKPSDT 41 (354)
Q Consensus 11 ~Ssr~~lae~~g~~ss~eq~~s~~k~~~s~~ 41 (354)
..++..|+..++.....+++||++++.....
T Consensus 48 ~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 48 DEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4678899999999999999999999877543
No 90
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.96 E-value=46 Score=20.84 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=27.9
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccch
Q psy10196 77 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALA 121 (354)
Q Consensus 77 ~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQN 121 (354)
.++..+...+...+... + ...++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 36677665555555432 2 3568999999999999998743
No 91
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=24.75 E-value=1.2e+02 Score=24.57 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCccCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcCCCCc
Q psy10196 75 RTTFTTYQLHELERAFEK-----SHYPDVYSREELAMKVNLPEV 113 (354)
Q Consensus 75 RT~fT~~Ql~~LE~~F~~-----~~yPs~~~R~~LA~~LgLse~ 113 (354)
|..+|.+|+.+|..+|.. +-+.+..+-..+.+.+|+...
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 456999999999999976 457888887777778876554
No 92
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.09 E-value=9.7 Score=29.56 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=25.9
Q ss_pred CchhhhhhhhcCCCCCchhhhcccCCCCCCC
Q psy10196 11 LSQRASIAENSGNSSSDEQAVSDLRRKPSDT 41 (354)
Q Consensus 11 ~Ssr~~lae~~g~~ss~eq~~s~~k~~~s~~ 41 (354)
..++..|+..++.....+++||++++.....
T Consensus 40 ~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 40 QAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 3578899999999999999999988865543
No 93
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.91 E-value=32 Score=23.90 Aligned_cols=49 Identities=16% Similarity=-0.037 Sum_probs=34.5
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhcccccc
Q psy10196 77 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAI 130 (354)
Q Consensus 77 ~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK~Kk~~ 130 (354)
.++..+...|...|... ..-.++|..+|++...|+.|...-+.+-++..
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 36778888887765332 34678999999999999988876665554433
No 94
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.91 E-value=80 Score=24.24 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCccCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcC--CCCcccccccc
Q psy10196 75 RTTFTTYQLHELERAFEK-----SHYPDVYSREELAMKVN--LPEVRVQFTAL 120 (354)
Q Consensus 75 RT~fT~~Ql~~LE~~F~~-----~~yPs~~~R~~LA~~Lg--Lse~qVqVWFQ 120 (354)
...++.+|+.+|..+|.. +-+.+..+-..+...+| +++..|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 456899999999999977 45788888888777776 56677777774
No 95
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=22.81 E-value=40 Score=28.06 Aligned_cols=38 Identities=5% Similarity=0.036 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhh
Q psy10196 85 ELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAA 123 (354)
Q Consensus 85 ~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRR 123 (354)
.....|...-|-.. .-.+||+..|++...+-.+|.|+-
T Consensus 36 aa~~lf~~~G~~~~-tv~~IA~~agvs~~t~Y~~F~sK~ 73 (215)
T 2qko_A 36 AAIEVLAREGARGL-TFRAVDVEANVPKGTASNYFPSRD 73 (215)
T ss_dssp HHHHHHHHTCTTTC-CHHHHHHHSSSTTTCHHHHCSCHH
T ss_pred HHHHHHHHhChhhc-cHHHHHHHcCCCcchHHHhCCCHH
Confidence 44556887776543 456789999999999999999975
No 96
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.82 E-value=53 Score=25.76 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=34.5
Q ss_pred CCccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCcccccccchhhhc
Q psy10196 75 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALR 125 (354)
Q Consensus 75 RT~fT~~Ql~~LE~~F~~~~yPs~~~R~~LA~~LgLse~qVqVWFQNRRaK 125 (354)
...+|..+..+|...++.. .-.++|..||+++..|+.+.++-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3458999999998765432 34789999999999999888765444
No 97
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=21.02 E-value=88 Score=25.77 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCCCCccCHHHHHHHHHHH-HhcCCCCHHHHHHHHH----Hc--CCCCcccccccchh
Q psy10196 72 RRNRTTFTTYQLHELERAF-EKSHYPDVYSREELAM----KV--NLPEVRVQFTALAA 122 (354)
Q Consensus 72 RR~RT~fT~~Ql~~LE~~F-~~~~yPs~~~R~~LA~----~L--gLse~qVqVWFQNR 122 (354)
++.|..+|.+|-..|-..+ ..+.-.. ..+||. .+ +++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678889999999998888 5555543 345666 77 77888888888664
Done!