RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10196
(354 letters)
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 104 bits (262), Expect = 2e-28
Identities = 31/50 (62%), Positives = 40/50 (80%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K RR+RTTF+ QL ELERAFE++ YPD+Y+REELA + NL E R+Q
Sbjct: 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 103 bits (258), Expect = 5e-28
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
RR+RT FT QL LE F+++ YPDV +RE+LA KV+L E +V+
Sbjct: 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 103 bits (259), Expect = 6e-28
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+RNRT+FT Q+ LE+ FE++HYPDV++RE LA K++LPE R+Q
Sbjct: 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 100 bits (252), Expect = 4e-27
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
RR RT FT+ QL +LE F+++ YPD+ +REE+A+ NL E RV+
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 48
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 101 bits (253), Expect = 4e-27
Identities = 28/49 (57%), Positives = 34/49 (69%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
RR RTTFT QL LE F K+ YPD++ REE+A+K+NLPE RVQ
Sbjct: 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 98.5 bits (246), Expect = 3e-26
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
RR RT FT Q+ LE F + YP + E+LA K+NL R+Q
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQ 46
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 96.4 bits (240), Expect = 2e-25
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+R RT+F +QL ++ F +H PD ++LA K L + +Q
Sbjct: 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 95.0 bits (237), Expect = 5e-25
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 74 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ TFT++QL ELE+AF ++HYPDV++REELAMK+ L E R+Q
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 93.2 bits (232), Expect = 3e-24
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R +RT FT YQL L+ F+ + YP E+L+ +NLP +
Sbjct: 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 88.9 bits (221), Expect = 1e-22
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K R RT QLH L + + PD +E+L L ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 85.2 bits (211), Expect = 4e-21
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 60 SPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
S + ++ +R RTT T QL L + + P + +A +V L + VQ
Sbjct: 6 SGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 79.3 bits (196), Expect = 4e-19
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 72 RRNRTTFTTYQLHELERAFEKSH-YPDVYSREELAMKVNLPEVRVQ 116
T T Q+ LE F K + +PD + +A + L E + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 78.2 bits (193), Expect = 1e-18
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+R RT T QL L + F+ ++ P +E+A K LP+ ++
Sbjct: 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 74.4 bits (183), Expect = 3e-17
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 72 RRNRTTFTTYQLHELERAFEKSH-YPDVYSREELAMKVNLPEVRVQ 116
+ + T Q+ LE F K + +PD + +A + L E + Q
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 73.5 bits (180), Expect = 1e-16
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 15/65 (23%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN---------------LP 111
R +R T+ L +E F ++ YPD REE+A N +
Sbjct: 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVT 62
Query: 112 EVRVQ 116
++V
Sbjct: 63 SLKVY 67
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 70.7 bits (172), Expect = 1e-14
Identities = 22/111 (19%), Positives = 37/111 (33%)
Query: 22 GNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTY 81
+ Q + L + G P+ + KK RRNR +
Sbjct: 66 KGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPA 125
Query: 82 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132
L +A+E+ P RE L + N E + + + A +G + T
Sbjct: 126 SQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVT 176
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 67.2 bits (163), Expect = 2e-14
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 67 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRV 126
KK RRNR + L +A+E+ P RE L + N E + + + A +
Sbjct: 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL 64
Query: 127 GVAIAT 132
G + T
Sbjct: 65 GSNLVT 70
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 68.5 bits (167), Expect = 3e-14
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 46 LEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA 105
L + + G + K R+ RT+FT + L FEK+ P E+A
Sbjct: 68 LNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMA 127
Query: 106 MKVNLPEVRVQF 117
++N V+
Sbjct: 128 KELNYDREVVRV 139
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 68.5 bits (166), Expect = 1e-13
Identities = 21/119 (17%), Positives = 41/119 (34%)
Query: 14 RASIAENSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRR 73
R + + + + + + D + + G + S KK RR
Sbjct: 85 RKQREILRQFNQTVQSSGNMTDKSSQDQLLFLFPEFSQQSHGPGQSDDACSEPTNKKMRR 144
Query: 74 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQFTALAAALRVGVAIAT 132
NR + L +A+++ P RE L + N E + + + A +G + T
Sbjct: 145 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVT 203
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 64.0 bits (156), Expect = 2e-13
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 65 PVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ + QL L+ +F ++ +P E L L V+
Sbjct: 2 SSGSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 66.3 bits (161), Expect = 2e-13
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 9 SQLSQRASIAENSGNSSS----DEQAVSDLRRKPSDTVDSDLEI-DDDKCSRGGSLSPSL 63
+Q ++ G S L K + LE ++ + S
Sbjct: 29 TQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENLQEISK 88
Query: 64 SPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
S + +R RT+ LE F KS P + +A ++ L + V+
Sbjct: 89 SETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 62.1 bits (151), Expect = 8e-13
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQF 117
H + T Q+ L+ +F +S +PD L L ++
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 50
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 63.5 bits (154), Expect = 2e-12
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 9 SQLSQRASIAENSGNSSSD----EQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLS 64
+Q + ++A G+ S L K + + + L ++ + G+L
Sbjct: 22 TQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALYNEKV 81
Query: 65 PVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+++K R+ RTT + LER F + P +A ++NL + V+
Sbjct: 82 GANERK-RKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 61.6 bits (149), Expect = 1e-11
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 60 SPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ + + R+ RT+ LE F K P + LA + L + V+
Sbjct: 88 TNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 60.0 bits (145), Expect = 4e-11
Identities = 14/74 (18%), Positives = 31/74 (41%)
Query: 43 DSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 102
D++ + D S S + R+ RT+ T LE++F ++ P
Sbjct: 73 DAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDIT 132
Query: 103 ELAMKVNLPEVRVQ 116
+A ++N+ + ++
Sbjct: 133 LIAEQLNMEKEVIR 146
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 54.5 bits (132), Expect = 3e-10
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K+K + +++ + LE F + + +EE+A K + ++V+
Sbjct: 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 54.0 bits (130), Expect = 7e-10
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 57 GSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
S KK RR+RT FT QL LE+ FEK Y R +LA + L +++V
Sbjct: 3 SGSSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 61
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 52.0 bits (125), Expect = 3e-09
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
H + + + Q+ ELER F Y R LA + L E +V
Sbjct: 3 HHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQV 48
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 51.6 bits (124), Expect = 3e-09
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
R+ RT ++++QL L+R F+K+ Y + R ELA + L + +V
Sbjct: 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQV 51
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 51.1 bits (123), Expect = 4e-09
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
R+ RT FTT QL LER F + Y + R E + ++L E +V
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQV 44
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 50.7 bits (122), Expect = 6e-09
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
R+ R F+ Q++ELER F++ Y R++LA + L +V
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQV 46
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 50.7 bits (122), Expect = 7e-09
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
++ RT F+ QL L+ F+K Y + +EL+ +NL +V
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQV 47
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 50.6 bits (121), Expect = 1e-08
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 70 KHRRNRTTFTTYQLHELERAF-EKSHYPDVYSREELAMKVNLPEVRVQF 117
R+RT + L L+ + YPD + L+ +++LP+ +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 50.5 bits (121), Expect = 1e-08
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 64 SPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
S K R+ R FT Q +ELER F + Y RE LA + L +V
Sbjct: 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 50.2 bits (120), Expect = 2e-08
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
K ++ RT+FT Q+ ELE+ F K Y R LA + + + +V
Sbjct: 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQV 61
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 49.3 bits (118), Expect = 2e-08
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
+ + F+ Q ELE+ FE Y R+ LA + L E +V
Sbjct: 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQV 51
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 48.9 bits (117), Expect = 3e-08
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
R+ R F+ Q++ELER F++ Y RE LA ++L +V
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQV 46
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 48.7 bits (116), Expect = 6e-08
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 51 DKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNL 110
+ + + K ++ RT F++ QL L F++ Y + +EL+ +NL
Sbjct: 2 KQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNL 61
Query: 111 PEVRV 115
+V
Sbjct: 62 SYKQV 66
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 46.6 bits (111), Expect = 2e-07
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
RR RT FT QL LE+ F K +Y R ELA ++NLPE +
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTI 45
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 49.1 bits (116), Expect = 2e-07
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 65 PVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
++ R FT Q L F+++ P + ++ ++ L V
Sbjct: 91 KDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 142
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 46.6 bits (111), Expect = 2e-07
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 71 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
RR RTTFT+ Q+ ELE+ F + Y +L+ K+ L +V
Sbjct: 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQV 46
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 44.6 bits (106), Expect = 7e-07
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 76 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
T+F+ Q+ ELER F + Y R LA + + + +V
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQV 41
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 44.6 bits (106), Expect = 8e-07
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 112
+R RT F++ QL L+R F ++ Y R++L+ ++ L E
Sbjct: 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 44
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 44.6 bits (105), Expect = 2e-06
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 56 GGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 115
G S S P + + +T Q+ LE +F KS +P + L ++ L +
Sbjct: 1 GSSGSSGAYPDFAPQKFKEKTQ---GQVKILEDSFLKSSFPTQAELDRLRVETKLSRREI 57
Query: 116 QF 117
Sbjct: 58 DS 59
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 43.1 bits (102), Expect = 3e-06
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 112
++R RT +T QL ELE+ F + Y R ELA+ +NL E
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTE 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 44.1 bits (104), Expect = 3e-06
Identities = 21/64 (32%), Positives = 28/64 (43%)
Query: 52 KCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLP 111
K R + +S RT FTT QL ELE+ F + Y R E+A + L
Sbjct: 15 KVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELN 74
Query: 112 EVRV 115
E +V
Sbjct: 75 ETQV 78
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 43.1 bits (101), Expect = 6e-06
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 55 RGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVR 114
GS P +P +K + T QL L+ +F S L + L
Sbjct: 2 SSGSSGPDFTP--QKFKEK-----TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRRE 54
Query: 115 VQF 117
+
Sbjct: 55 IDA 57
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 41.8 bits (98), Expect = 2e-05
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 60 SPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 112
+ + + +R RT++T YQ ELE+ F + Y R E+A ++L E
Sbjct: 17 LGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTE 69
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 41.4 bits (97), Expect = 2e-05
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQF 117
K R QL LE +F ++ P + L + + +
Sbjct: 9 TKYKER-----APEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDS 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 41.7 bits (97), Expect = 2e-05
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 57 GSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
G P K T QLH L+ AF ++ +P ++LA + L +
Sbjct: 11 GLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 40.9 bits (96), Expect = 3e-05
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 112
+R R T+T YQ ELE+ F + Y R E+A ++L E
Sbjct: 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTE 43
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 41.0 bits (96), Expect = 3e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 112
RR R T+T YQ ELE+ F +HY R E+A ++L E
Sbjct: 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTE 61
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 40.6 bits (95), Expect = 4e-05
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 60 SPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 112
+P+ + + + R+ R +T +Q ELE+ F + Y R E+A +NL E
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTE 54
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 40.6 bits (95), Expect = 4e-05
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 112
+ R+ R +T QL ELER + + + R ++ NL E
Sbjct: 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 48
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 40.2 bits (94), Expect = 5e-05
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 112
R+ R ++ QL ELER + + + R +++ +L E
Sbjct: 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSE 48
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 36.8 bits (84), Expect = 0.001
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEV 113
RNR + L +A+++ P RE L + N E
Sbjct: 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAEC 48
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 34.2 bits (78), Expect = 0.008
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 73 RNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ T QL L+ F + + ++L LP +
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.014
Identities = 33/272 (12%), Positives = 67/272 (24%), Gaps = 89/272 (32%)
Query: 34 LRRKPSDTVDSDLE--IDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTY--QLHELERA 89
L K + V +E + + L + ++ + +L+ +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINY----KFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQV 125
Query: 90 FEKSHYPDVYSREELAMKVN--LPEVRVQF------------TALAA-ALR--------- 125
F K + R + +K+ L E+R T +A
Sbjct: 126 FAKYNVS----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 126 VGVAIATFG----PEA------------------------------ESTSQHFLFLLSSR 151
+ PE S LL S+
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 152 -------ILDRFLPPPGVEPGSLDCQASVFTAPAELVDILRVTGGQEDRDVEVSLDVRMW 204
+L +L C+ + T ++ D L +SLD
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-----SAATTTHISLDHHSM 296
Query: 205 SPEMKKNEN------EVKVQPSPPVLTPFSPL 230
+ + ++ + + Q P + +P
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.040
Identities = 60/343 (17%), Positives = 101/343 (29%), Gaps = 113/343 (32%)
Query: 3 IGLILMSQLSQRASIAENSGNSSSDEQ-----------------AVSDLRRKPSDTVDSD 45
IG+I QL+ A+ G + + + A++ +D+ +S
Sbjct: 241 IGVI---QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-----ETDSWESF 292
Query: 46 LEIDDDKCS-------RGGSLSP--SLSPVDKKKHRRNRTTFTTYQLH-------ELERA 89
+ R P SL P + N + L +++
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 90 FEK--SHYPDVYSREELAMKVNLPEVRV------QFTALAAALRVGVAIATFGPEAESTS 141
K SH P + E+++ VN + V L LR A + +
Sbjct: 353 VNKTNSHLPA-GKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKAKA----PSGLDQSR 406
Query: 142 QHFLFLLSSRILD---RFLP---P-------PGVEPGSLDCQASVFTAPAELVDILRV-- 186
F S R L RFLP P P + + D + + A+ D +++
Sbjct: 407 IPF----SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK--D-IQIPV 459
Query: 187 --TGGQED-RDVEVSLD---VRM-------WSPEMKKNENEVKVQPSPPVLTPFSPLDET 233
T D R + S+ V W E + + + +L F P
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKW-------ETTTQFKAT-HILD-FGPG--- 507
Query: 234 ESSRPPTLVAHKRHCVGPTNTGGGFYKRRTVH-DDLDSEDSDQ 275
+S L + G G R + LD D
Sbjct: 508 GASGLGVLTHRNK-------DGTGV---RVIVAGTLDINPDDD 540
Score = 29.6 bits (66), Expect = 1.9
Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 83/218 (38%)
Query: 10 QLSQRASIAEN----SGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSP 65
+ +R I EN + D + ++ K + + +K G L
Sbjct: 1679 EKGKR--IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK----GLL------ 1726
Query: 66 VDKKKHRRNRTTFTTYQ---LHELERAFEKSHYPDVYSREELAMKVNLPEVRV------- 115
+ T FT Q EK+ + E+L K +P
Sbjct: 1727 --------SATQFT--QPALT-----LMEKAAF------EDLKSKGLIPADATFAGHSLG 1765
Query: 116 QFTALAA---------ALRV----GVAIATFGPEAESTSQHFLFLLSSRILDRFLPPPGV 162
++ ALA+ + V G+ + P E ++ ++ +
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY------GMI-------AI 1812
Query: 163 EPGSLDCQASVFTAPA--ELVD-ILRVTGGQEDRDVEV 197
PG + A+ F+ A +V+ + + TG VE+
Sbjct: 1813 NPGRV---AASFSQEALQYVVERVGKRTGWL----VEI 1843
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 34.1 bits (78), Expect = 0.057
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 5/106 (4%)
Query: 216 KVQPSPPVLTPFSPLDETESSRPPTLVAHKRHC-VGPTNTGGGFYKRRTVHDDLDSEDSD 274
+ P F + + T + P+ + + + + +
Sbjct: 328 QTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAA 387
Query: 275 QQEPPQLSPESQAAATTCRKRGRPPKKHPPE----PPIQEPPVKKP 316
P +G PP+ +PP+ PP PP P
Sbjct: 388 YPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAP 433
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 29.8 bits (67), Expect = 0.25
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 65 PVDKKKHRRNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQF 117
++ LE+ F + YPD + L+ +++ ++Q
Sbjct: 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 207 EMKKNENEVKV-QP-SPPVL 224
+KK + +K+ S P L
Sbjct: 21 ALKKLQASLKLYADDSAPAL 40
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 28.0 bits (61), Expect = 1.2
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKS----HYPDVYSREELAMKVNL 110
++RT F+ L L++ ++ E +A ++N+
Sbjct: 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNV 51
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 27.6 bits (61), Expect = 1.8
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 60 SPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHY 95
S S +R RT FT Q ++ E+ +
Sbjct: 6 SGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGW 41
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 29.0 bits (66), Expect = 2.7
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 145 LFLLSSRILDRF--LPPPGVEPGSLDCQASVFTAP 177
LFL+ + +L RF P + SL+ V
Sbjct: 434 LFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLI 468
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 27.5 bits (60), Expect = 7.1
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 275 QQEPPQLSPESQAAATTCRKRGRPPKKHPPEPPIQEPPVKKPTK 318
+ + P+ P + ++ +P K P E ++P KP K
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 27.3 bits (60), Expect = 7.3
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 276 QEPPQLSPESQAAATTCRKRGRPPKKHPPEPPIQEPPVKKPTKP 319
+ QL A A +++ + +K P + P +P + K
Sbjct: 39 SQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKK 82
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold,
zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus
cereus}
Length = 242
Score = 27.0 bits (60), Expect = 8.2
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 17/70 (24%)
Query: 285 SQAAATTCRKRGRPPKKHPPEPP-IQEPPVKKPTKPNFVSIVLANKNKQLKSLFDEDSSD 343
+ A + R P+ P + KPNF D S+
Sbjct: 120 VEEAIFSAGIRKYMPELSPHRVESFYNYMINGFHKPNFC----------------IDISE 163
Query: 344 YKPNKIRALK 353
Y K+ AL+
Sbjct: 164 YLSIKVEALE 173
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 27.2 bits (61), Expect = 9.4
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 125 RVGVAIATFGP 135
+GVA T+G
Sbjct: 84 TLGVAAVTYGA 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,306,901
Number of extensions: 316271
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 98
Length of query: 354
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 259
Effective length of database: 4,049,298
Effective search space: 1048768182
Effective search space used: 1048768182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.6 bits)