RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10196
(354 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 71.0 bits (174), Expect = 2e-16
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 60 SPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+P+ + + + R+ R +T +Q ELE+ F + Y R E+A +NL E +V+
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 68.3 bits (167), Expect = 1e-15
Identities = 26/45 (57%), Positives = 37/45 (82%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+RNRT+FT Q+ LE+ FE++HYPDV++RE LA K++LPE R+Q
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 63.8 bits (155), Expect = 6e-14
Identities = 30/47 (63%), Positives = 38/47 (80%)
Query: 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K RR+RTTF+ QL ELERAFE++ YPD+Y+REELA + NL E R+Q
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 62.6 bits (152), Expect = 1e-13
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R+ R ++ QL ELER + + + R +++ +L E ++
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 62.5 bits (152), Expect = 1e-13
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 75 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R T+T YQ ELE+ F + Y R E+A ++L E +++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 62.5 bits (152), Expect = 1e-13
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ + F+ Q ELE+ FE Y R+ LA + L E +V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 63.1 bits (153), Expect = 1e-13
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQF 117
R +R T+ L +E F ++ YPD REE+A N +
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGK 46
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 61.8 bits (150), Expect = 3e-13
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 70 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K R RT QLH L + + PD +E+L L ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 60.3 bits (146), Expect = 7e-13
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 73 RNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R RT F++ QL L+R F ++ Y R++L+ ++ L E +++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 59.6 bits (144), Expect = 1e-12
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
RR RT FT+ QL +LE F+++ YPD+ +REE+A+ NL E RV+
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 60.4 bits (146), Expect = 2e-12
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 52 KCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLP 111
K R + +S RT FTT QL ELE+ F + Y R E+A + L
Sbjct: 8 KVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELN 67
Query: 112 EVRVQ 116
E +V+
Sbjct: 68 ETQVK 72
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 59.5 bits (144), Expect = 2e-12
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R+ RT FTT QL LER F + Y + R E + ++L E +V+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 58.8 bits (142), Expect = 3e-12
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 73 RNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ RTT + LER F + P +A ++NL + V+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 58.8 bits (142), Expect = 3e-12
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 73 RNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R RT FT QL LE+ F K +Y R ELA ++NLPE ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 57.6 bits (139), Expect = 7e-12
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 75 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R FT Q L F+++ P + ++ ++ L V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 57.3 bits (138), Expect = 1e-11
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 68 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ +R RT+ LE F K P + +A ++ L + V+
Sbjct: 5 VQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 56.1 bits (135), Expect = 3e-11
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
RR RTTFT+ Q+ ELE+ F + Y +L+ K+ L +V+
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 55.3 bits (133), Expect = 7e-11
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R+ R F+ Q++ELER F++ Y RE LA ++L +V+
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 54.5 bits (131), Expect = 9e-11
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 75 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+++ + LE+ F + + +EE+A K + ++V+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 53.5 bits (128), Expect = 3e-10
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
K R+ R FT Q +ELER F + Y RE LA + L +V+
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 53.5 bits (128), Expect = 4e-10
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 72 RRNRTTFTTYQLHELERAFEKS-HYPDVYSREELAMKVNLPEVRVQ 116
T T Q+ LE F K +PD + +A + L E + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 50.3 bits (120), Expect = 3e-09
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 75 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
RT+ T LE++F ++ P +A ++N+ + ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 50.2 bits (119), Expect = 5e-09
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 75 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
R + L +A+E+ P RE L + N E +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQR 42
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 49.6 bits (118), Expect = 9e-09
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 72 RRNRTTFTTYQLHELERAFE---KSHYPDVYSREELAMKVNLPEVRVQ 116
RR R F L F + YP ++EELA K + +V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 47.4 bits (113), Expect = 3e-08
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 72 RRNRTTFTTYQLHELERAFEKSH---YPDVYSREELAMKVNLPEVRVQ 116
+ R + + + + YP ++++A + NL ++V
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 46.7 bits (111), Expect = 7e-08
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQ 116
+ HR FT + LE F K + Y D E L +L ++++
Sbjct: 1 RGHR-----FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 46.6 bits (110), Expect = 9e-08
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 69 KKHRRNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQ 116
R+RT + L L+ YPD + L+ +++LP+ +
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 45.8 bits (108), Expect = 2e-07
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 56 GGSLSPSLSPVDK-KKHRRNRTTFTTYQLHELERAFEK----SHYPDVYSREELAMKVNL 110
G S S +P +R RT FT Q ++ E+ D + E+ + +
Sbjct: 1 GSSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGV 60
Query: 111 PEVRVQ 116
++
Sbjct: 61 RRQVLK 66
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 44.8 bits (106), Expect = 3e-07
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 73 RNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQ 116
++ LE+ F + YPD + L+ +++ ++Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 43.6 bits (103), Expect = 7e-07
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 79 TTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQ 116
T LE+ F + +PD E L+ +++ +Q
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 37.0 bits (85), Expect = 2e-04
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 61 PSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
P +P +K + T QL L+ +F S L + L +
Sbjct: 1 PDFTP--QKFKEK-----TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 49
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 35.5 bits (81), Expect = 8e-04
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 72 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 116
+ T QL L+ F + + ++L LP +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48
>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma
constant domain 1, CH1-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 25.5 bits (56), Expect = 2.8
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 218 QPSPPVLTPFSPLDETESSRPPTLV 242
+ +PP + P +P +++ TL
Sbjct: 2 KTTPPSVYPLAPGSAAQTNSMVTLG 26
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT
{Helicobacter pylori [TaxId: 210]}
Length = 349
Score = 27.3 bits (60), Expect = 2.9
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 300 KKHPPEPPIQEPPVKKPTKPNFVSIVLANKNKQLKSLFDEDSSDYKP 346
K+ P P K F S V +N N +++ F + + +P
Sbjct: 161 KEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEP 207
>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 25.7 bits (56), Expect = 3.7
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 218 QPSPPVLTPFSPLDETESSRPPTLVAH 244
QP P + P + + +L
Sbjct: 1 QPREPQVYTLPPSRDELTKNQVSLTCL 27
>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma
constant domain 1, CH1-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 25.4 bits (55), Expect = 4.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 218 QPSPPVLTPFSPLDETESSRPPTLVAH 244
+ + P + P +P+ S TL
Sbjct: 2 KTTAPSVYPLAPVCGDTSGSSVTLGCL 28
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Length = 201
Score = 26.3 bits (57), Expect = 5.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 56 GGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREEL 104
G S S +LS ++ + N T FT +L ++F K +R+E
Sbjct: 1 GNSKSGALSKEILEELQLN-TKFTEEELSSWYQSFLKECPSGRITRQEF 48
>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma
constant domain 1, CH1-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 101
Score = 24.9 bits (54), Expect = 6.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 219 PSPPVLTPFSPLDETESSRPPTLV 242
+ P + P P T ++ TL
Sbjct: 3 TTAPSVFPLVPGSATAAASAVTLG 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,273,868
Number of extensions: 59863
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 40
Length of query: 354
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,226,816
Effective search space: 328786688
Effective search space used: 328786688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)