BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10199
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R4N|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant N33a
pdb|2R4N|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant N33a
Length = 427
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|2R88|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta S3 Kink
pdb|2R88|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta S3 Kink
Length = 426
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 202 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 247
>pdb|3PGR|A Chain A, Asp348arg Mutant Of Ecfadl
Length = 427
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|2R4O|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta Npa
pdb|2R4O|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta Npa
Length = 427
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|3PF1|A Chain A, E. Coli Fadl Asp348ala Mutant
pdb|3PF1|B Chain B, E. Coli Fadl Asp348ala Mutant
Length = 424
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|2R8A|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N8
pdb|2R8A|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N8
Length = 419
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 195 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 240
>pdb|3DWN|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant A77eS100R
pdb|3DWN|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant A77eS100R
Length = 427
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|2R4L|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
pdb|2R4L|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
pdb|2R4L|C Chain C, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
Length = 427
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|1T16|A Chain A, Crystal Structure Of The Bacterial Fatty Acid Transporter
Fadl From Escherichia Coli
pdb|1T16|B Chain B, Crystal Structure Of The Bacterial Fatty Acid Transporter
Fadl From Escherichia Coli
pdb|1T1L|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl
pdb|1T1L|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl
Length = 427
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|3PGS|A Chain A, Phe3gly Mutant Of Ecfadl
pdb|3PGS|B Chain B, Phe3gly Mutant Of Ecfadl
Length = 427
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|3PGU|A Chain A, Phe3glu Mutant Of Ecfadl
Length = 427
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
>pdb|2R89|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N3
pdb|2R89|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N3
Length = 424
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 200 NQWGFGWNA------GILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 245
>pdb|2R4P|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant G212e
pdb|2R4P|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant G212e
Length = 427
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 NEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYN 104
N++ GWN +Y +D NN Y + + +E ID+ Y+ D N +N
Sbjct: 203 NQWGFGWNA------EILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFN 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.132 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,576,837
Number of Sequences: 62578
Number of extensions: 416375
Number of successful extensions: 824
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 59
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)