Query psy10199
Match_columns 218
No_of_seqs 121 out of 939
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 20:20:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00379 Chitin_bind_4: Insect 99.6 1.1E-15 2.4E-20 105.1 7.5 52 115-171 1-52 (52)
2 PF06004 DUF903: Bacterial pro 76.8 7.9 0.00017 27.4 5.0 39 117-163 2-40 (50)
3 PHA02698 hypothetical protein; 59.2 5.6 0.00012 31.1 1.4 21 169-189 19-39 (89)
4 PF03562 MltA: MltA specific i 43.6 12 0.00025 32.0 1.1 56 142-201 80-143 (158)
5 PRK15401 alpha-ketoglutarate-d 35.9 57 0.0012 28.9 4.2 48 148-195 46-104 (213)
6 COG0450 AhpC Peroxiredoxin [Po 35.4 64 0.0014 28.6 4.4 49 142-200 120-168 (194)
7 PF05899 Cupin_3: Protein of u 28.2 82 0.0018 22.7 3.3 34 140-175 26-59 (74)
8 PF13511 DUF4124: Domain of un 27.6 74 0.0016 21.6 2.8 18 147-167 13-30 (60)
9 PF10902 DUF2693: Protein of u 26.4 2.1E+02 0.0045 22.2 5.4 57 113-173 1-63 (83)
10 PRK05461 apaG CO2+/MG2+ efflux 26.2 1E+02 0.0022 25.3 3.8 21 141-161 92-112 (127)
11 PF00659 POLO_box: POLO box du 25.3 1.4E+02 0.003 21.0 3.9 61 114-195 4-67 (68)
12 PRK14818 NADH dehydrogenase su 21.6 49 0.0011 28.9 1.2 22 176-197 132-153 (173)
13 cd07240 ED_TypeI_classII_N N-t 21.4 1.4E+02 0.003 21.2 3.4 20 148-167 97-116 (117)
14 KOG4327|consensus 21.0 42 0.00092 30.3 0.7 15 175-189 166-180 (218)
15 cd07252 BphC1-RGP6_N_like N-te 20.4 1.4E+02 0.0029 22.1 3.3 20 148-167 100-119 (120)
16 PF09242 FCSD-flav_bind: Flavo 20.1 1.1E+02 0.0025 22.4 2.8 27 148-174 9-36 (71)
No 1
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=99.63 E-value=1.1e-15 Score=105.07 Aligned_cols=52 Identities=33% Similarity=0.614 Sum_probs=46.3
Q ss_pred eeEEEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEEEEEeCCCCc
Q psy10199 115 WNNDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 171 (218)
Q Consensus 115 Y~F~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tVtYtADENGF 171 (218)
|+|+|+++|| +++|+|. .++ +...++|+|+|+|++|||++++|+|+||++||
T Consensus 1 Y~f~Y~~~dg-~~~e~~~---~~~-~~~~~~v~GsY~y~~pdG~~~~V~Y~Ad~~Gf 52 (52)
T PF00379_consen 1 YSFGYETSDG-SRQEEGR---PET-EDEGGVVRGSYSYIDPDGQTRTVTYVADENGF 52 (52)
T ss_pred CeeEeEcCCC-CEEEEEE---ccc-CCCCCEEEEEEEEECCCCCEEEEEEECCCCCC
Confidence 7899999999 8888887 222 45778999999999999999999999999998
No 2
>PF06004 DUF903: Bacterial protein of unknown function (DUF903); InterPro: IPR010305 This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.; PDB: 2RB6_B 3BDU_F 2RA2_F 2RD1_C 3FIF_H 2JN0_A 2K57_A.
Probab=76.82 E-value=7.9 Score=27.36 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=28.2
Q ss_pred EEEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEEE
Q psy10199 117 NDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 117 F~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tVt 163 (218)
|--.|.||......|.++-. .-.|-|+|.+.+|+.+.|.
T Consensus 2 yvi~t~dG~~i~t~gkP~~D--------~~tG~~~y~D~~G~~~qIn 40 (50)
T PF06004_consen 2 YVITTNDGRTIVTDGKPKYD--------KDTGMYSYTDADGKEQQIN 40 (50)
T ss_dssp EEEEETTSEEEEESSEEEEE--------TTTTEEEEEBTTS-EEEEE
T ss_pred cEEEeCCCcEEEeCCCcccc--------CCCCcEEEECCCCCEEEEc
Confidence 34568888887777776521 2359999999999988764
No 3
>PHA02698 hypothetical protein; Provisional
Probab=59.19 E-value=5.6 Score=31.12 Aligned_cols=21 Identities=33% Similarity=0.792 Sum_probs=17.5
Q ss_pred CCccccCCCCCCCCCCcHHHH
Q psy10199 169 TGYHASGAHLPTPPPIPDEIA 189 (218)
Q Consensus 169 NGFrp~G~HLPtpPPiP~aI~ 189 (218)
.|-|+.|+..|+|-|+|++|.
T Consensus 19 ddvqvnGDlmPtp~p~peeV~ 39 (89)
T PHA02698 19 DDVQVNGDLMPTPEPTPEEVP 39 (89)
T ss_pred hccccCCcccCCCCCChhhhc
Confidence 467888999999999888763
No 4
>PF03562 MltA: MltA specific insert domain; InterPro: IPR005300 This group of proteins includes MltA; a membrane-bound, murein degrading transglycosylase enzyme which plays an important role in the controlled growth of the stress-bearing sacculus of Escherichia coli [, ].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 2PI8_D 2AE0_X 2PIC_A 2GAE_A 2PJJ_A 3CZB_A 2G6G_A 2PNW_A 2G5D_A.
Probab=43.64 E-value=12 Score=31.97 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=34.6
Q ss_pred cCceeEeEEEEECCCCCEEEEEEEeC-CCCccccCC------CCCCCCCCcHHHHHH-HHhccccCCC
Q psy10199 142 EAQTAQGQSSYTSPDGTPIQTQWYAD-ETGYHASGA------HLPTPPPIPDEIAKA-IATLPKLVEE 201 (218)
Q Consensus 142 e~lvVrGSYSYidPDG~~~tVtYtAD-ENGFrp~G~------HLPtpPPiP~aI~kA-La~i~~~P~~ 201 (218)
-.|.|+||=.-.-|||..+.|.|-+. ..-|+..|. .||.. ....++ .+++.+||+.
T Consensus 80 fflqIQGSGrl~l~DG~~~rvgYAg~NG~pY~sIGr~Li~~G~i~~~----~~Smq~Ir~wl~~~P~~ 143 (158)
T PF03562_consen 80 FFLQIQGSGRLRLPDGSTVRVGYAGQNGHPYTSIGRLLIDRGEIPRE----QMSMQAIRAWLRAHPEE 143 (158)
T ss_dssp HHHHHHSEEEEE-TTSSEEEEEEEEE-SS----HHHHHHHTTSS-TT----S-SHHHHHHHHHHTGGG
T ss_pred HHeeecCcEEEEcCCCCEEEEEEcccCCCccccHHHHHHHcCCcChh----hCCHHHHHHHHHHCHHH
Confidence 34689999999999999999999654 334666543 34433 222334 4889999874
No 5
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=35.90 E-value=57 Score=28.95 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=32.4
Q ss_pred eEEEEECCCCCEEEE--------EEEeCCCCccccCCC--CCCC-CCCcHHHHHHHHhc
Q psy10199 148 GQSSYTSPDGTPIQT--------QWYADETGYHASGAH--LPTP-PPIPDEIAKAIATL 195 (218)
Q Consensus 148 GSYSYidPDG~~~tV--------tYtADENGFrp~G~H--LPtp-PPiP~aI~kALa~i 195 (218)
.-+....|.|...+| .+.+|+.||+=.+.+ -+.| ||+|+.+++-.+.+
T Consensus 46 p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P~~l~~L~~~~ 104 (213)
T PRK15401 46 PFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPAMPASFLALAQRA 104 (213)
T ss_pred CccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCCchHHHHHHHHHH
Confidence 345677788877666 778898999998754 3444 56777766555444
No 6
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.41 E-value=64 Score=28.65 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=34.1
Q ss_pred cCceeEeEEEEECCCCCEEEEEEEeCCCCccccCCCCCCCCCCcHHHHHHHHhccccCC
Q psy10199 142 EAQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVE 200 (218)
Q Consensus 142 e~lvVrGSYSYidPDG~~~tVtYtADENGFrp~G~HLPtpPPiP~aI~kALa~i~~~P~ 200 (218)
+++.+||.| -+||+|+.+.+.+.+..-|=-+. -.-.+++||++.++|-+
T Consensus 120 ~g~a~R~~F-IIDp~g~ir~~~v~~~~iGRn~d---------EilR~idAlq~~~~hg~ 168 (194)
T COG0450 120 EGLALRGTF-IIDPDGVIRHILVNPLTIGRNVD---------EILRVIDALQFVAKHGE 168 (194)
T ss_pred CCcceeEEE-EECCCCeEEEEEEecCCCCcCHH---------HHHHHHHHHHHHHHhCC
Confidence 445899987 68999999999888776553332 11345678888887743
No 7
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=28.23 E-value=82 Score=22.73 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=24.9
Q ss_pred cccCceeEeEEEEECCCCCEEEEEEEeCCCCccccC
Q psy10199 140 DLEAQTAQGQSSYTSPDGTPIQTQWYADETGYHASG 175 (218)
Q Consensus 140 d~e~lvVrGSYSYidPDG~~~tVtYtADENGFrp~G 175 (218)
++-..++.|+-..++++|.. +++.|++-=|-|.|
T Consensus 26 ~E~~~vleG~v~it~~~G~~--~~~~aGD~~~~p~G 59 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDGET--VTFKAGDAFFLPKG 59 (74)
T ss_dssp EEEEEEEEEEEEEEETTTEE--EEEETTEEEEE-TT
T ss_pred CEEEEEEEeEEEEEECCCCE--EEEcCCcEEEECCC
Confidence 44567999999999999986 56788765444443
No 8
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=27.64 E-value=74 Score=21.62 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=14.0
Q ss_pred EeEEEEECCCCCEEEEEEEeC
Q psy10199 147 QGQSSYTSPDGTPIQTQWYAD 167 (218)
Q Consensus 147 rGSYSYidPDG~~~tVtYtAD 167 (218)
..-|+++|++|++ +|+-.
T Consensus 13 a~vYk~~D~~G~v---~ysd~ 30 (60)
T PF13511_consen 13 AEVYKWVDENGVV---HYSDT 30 (60)
T ss_pred ccEEEEECCCCCE---EECcc
Confidence 4689999999974 66655
No 9
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=26.39 E-value=2.1e+02 Score=22.22 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCeeEEEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCC------CEEEEEEEeCCCCccc
Q psy10199 113 IDWNNDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDG------TPIQTQWYADETGYHA 173 (218)
Q Consensus 113 GsY~F~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG------~~~tVtYtADENGFrp 173 (218)
|.-.|-|+-.||+.|...|+++...- .....|.+.+.-+.. ....+-|--+..|||-
T Consensus 1 G~h~~~feK~DGtiR~a~gT~d~~li----~~~~~~~~~~~~~~~~~rkes~~s~~yfDve~~~WRS 63 (83)
T PF10902_consen 1 GEHEFVFEKVDGTIRVAKGTRDPDLI----PYEEKGKEMFPPPTKPERKESTTSVRYFDVEKKGWRS 63 (83)
T ss_pred CcEEEEEEecCCCEEEEEEecCcccc----cceecCcccccCCCCccccCCcceEEEEEeccCceee
Confidence 44578999999999999999863221 124455554433332 1334445555777775
No 10
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=26.18 E-value=1e+02 Score=25.32 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.0
Q ss_pred ccCceeEeEEEEECCCCCEEE
Q psy10199 141 LEAQTAQGQSSYTSPDGTPIQ 161 (218)
Q Consensus 141 ~e~lvVrGSYSYidPDG~~~t 161 (218)
.....++|+|.+++++|....
T Consensus 92 tp~G~M~G~y~~~~~~G~~F~ 112 (127)
T PRK05461 92 TPSGTMQGHYQMVDEDGERFE 112 (127)
T ss_pred CCCEEEEEEEEEEeCCCCEEE
Confidence 345689999999999998654
No 11
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=25.29 E-value=1.4e+02 Score=20.98 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=31.3
Q ss_pred CeeEEEecCCCcEEEeeeeeecCCCccccCcee---EeEEEEECCCCCEEEEEEEeCCCCccccCCCCCCCCCCcHHHHH
Q psy10199 114 DWNNDFETGNGIAVQEQGALKNAGQKDLEAQTA---QGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAK 190 (218)
Q Consensus 114 sY~F~YETsNGi~reE~G~lkn~G~~d~e~lvV---rGSYSYidPDG~~~tVtYtADENGFrp~G~HLPtpPPiP~aI~k 190 (218)
.|.+.|..+||+. |..-+.++ -+++ .....|++++|+..+ |...+ +... .|+++++
T Consensus 4 k~gi~~~LSng~v----qv~FnD~t----kivl~~~~~~v~yi~~~~~~~~--~~~~~---------~~~~--~p~~l~~ 62 (68)
T PF00659_consen 4 KYGIGYQLSNGTV----QVNFNDHT----KIVLSPDGRLVTYIDRDGERQT--YSLSS---------LLED--FPEDLKK 62 (68)
T ss_dssp CSEEEEEETTSEE----EEEETTS-----EEEEETTCCEEEEE-TTS-EEE--EECTC---------HHHH----HHHHH
T ss_pred ceEEEEEEeCCCE----EEEEeCCC----EEEECCCCCEEEEECCCCcEEE--EEccc---------cccC--CCHHHHH
Confidence 4778999999994 45454443 1222 125566666665433 22222 1111 4678888
Q ss_pred HHHhc
Q psy10199 191 AIATL 195 (218)
Q Consensus 191 ALa~i 195 (218)
-|.++
T Consensus 63 kl~~~ 67 (68)
T PF00659_consen 63 KLTYL 67 (68)
T ss_dssp HHHHH
T ss_pred Hhhcc
Confidence 88765
No 12
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=21.60 E-value=49 Score=28.93 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=16.7
Q ss_pred CCCCCCCCCcHHHHHHHHhccc
Q psy10199 176 AHLPTPPPIPDEIAKAIATLPK 197 (218)
Q Consensus 176 ~HLPtpPPiP~aI~kALa~i~~ 197 (218)
-.+|-=||.|++|+.+|..+.+
T Consensus 132 vyIPGCPP~PeaIl~gil~L~~ 153 (173)
T PRK14818 132 VYVPGCPPRPEALTEGLLRLQE 153 (173)
T ss_pred EEccCCCCCHHHHHHHHHHHHH
Confidence 3577779999999998855443
No 13
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=21.37 E-value=1.4e+02 Score=21.19 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.8
Q ss_pred eEEEEECCCCCEEEEEEEeC
Q psy10199 148 GQSSYTSPDGTPIQTQWYAD 167 (218)
Q Consensus 148 GSYSYidPDG~~~tVtYtAD 167 (218)
-++.+.||||..++|.+..|
T Consensus 97 ~~~~~~DP~G~~ie~~~~~~ 116 (117)
T cd07240 97 RGLRFQDPDGHLLELFVEAD 116 (117)
T ss_pred eEEEEECCCCCEEEEEEccC
Confidence 35678999999999887655
No 14
>KOG4327|consensus
Probab=20.99 E-value=42 Score=30.30 Aligned_cols=15 Identities=40% Similarity=1.068 Sum_probs=10.8
Q ss_pred CCCCCCCCCCcHHHH
Q psy10199 175 GAHLPTPPPIPDEIA 189 (218)
Q Consensus 175 G~HLPtpPPiP~aI~ 189 (218)
+.-+|.|||+|+.|.
T Consensus 166 ~sfmpppPP~pp~i~ 180 (218)
T KOG4327|consen 166 NSFMPPPPPMPPPIC 180 (218)
T ss_pred cccCCCCCCCCcccC
Confidence 345788999887663
No 15
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=20.36 E-value=1.4e+02 Score=22.10 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=16.2
Q ss_pred eEEEEECCCCCEEEEEEEeC
Q psy10199 148 GQSSYTSPDGTPIQTQWYAD 167 (218)
Q Consensus 148 GSYSYidPDG~~~tVtYtAD 167 (218)
.++.+.||||..+++.+..+
T Consensus 100 ~~~~~~DPdG~~iE~~~~~~ 119 (120)
T cd07252 100 GLIRFADPDGNRHELFWGPK 119 (120)
T ss_pred EEEEEECCCCCEEEEEeccc
Confidence 47899999999988877544
No 16
>PF09242 FCSD-flav_bind: Flavocytochrome c sulphide dehydrogenase, flavin-binding; InterPro: IPR015323 This entry represents the flavin-binding domain of flavocytochrome c sulphide dehydrogenase (FCSD), enzymes found in sulphur-oxidising bacteria such as the purple phototrophic bacteria Chromatium vinosum [, ]. These enzymes are complexes of flavoprotein and a dihaem cytochrome that carry out hydrogen sulphide-dependent cytochrome C reduction. The dihaem cytochrome folds into two domains, each of which resembles mitochondrial cytochrome c, with the two haem groups bound to the interior of the subunit. The flavoprotein subunit has a glutathione reductase-like fold consisting of a beta(3,4)-alpha(3) core, and an alpha+beta sandwich. The active site of the flavoprotein subunit contains a catalytically important disulphide bridge located above the pyrimidine portion of the flavin ring []. Electrons are transferred from the flavin to one of the haem groups in the cytochrome. This entry represents a flavoprotein domain required for binding to flavin, and subsequent electron transfer. ; PDB: 1FCD_A.
Probab=20.11 E-value=1.1e+02 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=17.4
Q ss_pred eEEEEECCC-CCEEEEEEEeCCCCcccc
Q psy10199 148 GQSSYTSPD-GTPIQTQWYADETGYHAS 174 (218)
Q Consensus 148 GSYSYidPD-G~~~tVtYtADENGFrp~ 174 (218)
==||+++|| |..+...|..++.++...
T Consensus 9 tCYSlv~p~~aIsVa~vy~~~~~~i~~v 36 (71)
T PF09242_consen 9 TCYSLVAPDYAISVAGVYRYDDGKIVEV 36 (71)
T ss_dssp EEEEEEETTEEEEEEEEEEE-TTTEEE-
T ss_pred eEEEEeCCCceEEEEEEEEECCCeEEEe
Confidence 357777776 677777777777775444
Done!