Query psy10199
Match_columns 218
No_of_seqs 121 out of 939
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:21:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rd1_A Putative outer membrane 70.9 6.4 0.00022 28.1 4.5 39 117-163 5-43 (62)
2 2k57_A Putative lipoprotein; s 69.8 6.3 0.00021 28.0 4.3 39 117-163 5-43 (61)
3 2rb6_A Uncharacterized protein 66.3 7.9 0.00027 27.5 4.2 39 117-163 5-43 (61)
4 3bdu_A Putative lipoprotein; X 64.6 5.9 0.0002 28.2 3.3 38 117-162 5-42 (62)
5 2jn0_A Hypothetical lipoprotei 63.9 5.6 0.00019 28.3 3.1 38 118-163 6-43 (61)
6 2ra2_A Putative lipoprotein; X 57.3 7.9 0.00027 27.8 2.9 38 117-162 6-43 (64)
7 3p34_A Serine/threonine-protei 39.8 43 0.0015 28.8 5.3 25 110-138 54-78 (232)
8 1xvs_A Protein APAG; MCSG APC2 31.4 93 0.0032 24.3 5.6 22 142-163 92-113 (126)
9 2f1e_A Protein APAG; APAG prot 31.1 88 0.003 24.4 5.4 22 142-163 93-114 (127)
10 3ca8_A Protein YDCF; two domai 30.0 37 0.0013 29.2 3.4 33 166-198 221-253 (266)
11 3tue_A Tryparedoxin peroxidase 29.3 59 0.002 27.3 4.4 36 124-165 130-165 (219)
12 1q4k_B Serine/threonine-protei 28.9 62 0.0021 28.1 4.6 25 110-138 72-96 (259)
13 1tza_A APAG protein, SOR45; st 28.8 89 0.003 24.8 5.1 22 142-163 92-113 (134)
14 4g2e_A Peroxiredoxin; redox pr 28.4 78 0.0027 23.6 4.6 38 146-195 119-156 (157)
15 1xq4_A Protein APAG; all beta 27.6 93 0.0032 24.8 5.1 22 142-163 97-118 (139)
16 3keb_A Probable thiol peroxida 26.7 48 0.0017 27.8 3.4 45 146-202 137-181 (224)
17 3sbc_A Peroxiredoxin TSA1; alp 25.0 77 0.0026 26.5 4.4 47 142-201 139-188 (216)
18 3bid_A UPF0339 protein NMB1088 23.2 65 0.0022 22.5 3.0 24 104-127 2-25 (64)
19 4gqc_A Thiol peroxidase, perox 22.5 74 0.0025 24.1 3.5 35 152-197 126-160 (164)
20 1twu_A Hypothetical protein YY 22.5 52 0.0018 23.3 2.5 17 147-164 116-132 (139)
21 3ega_A Pellino-2, protein pell 21.0 1.3E+02 0.0045 26.7 5.2 54 121-174 38-93 (263)
No 1
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=70.89 E-value=6.4 Score=28.09 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=29.1
Q ss_pred EEEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEEE
Q psy10199 117 NDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 117 F~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tVt 163 (218)
|--.|.||..-...|.++-. .-.|-|+|.+.+|+.+.|.
T Consensus 5 yvitt~DG~~IvT~gKP~~D--------~dTGm~sY~D~~G~~~qIn 43 (62)
T 2rd1_A 5 YVMTTKNGQTIVTQGKPQLD--------KETGMTSYTDQEGNQREIN 43 (62)
T ss_dssp EEEEETTSCEEEEESCCEEE--------TTTTEEEEECTTSCEEEEE
T ss_pred eEEEeCCCcEEEcCCCccee--------CCCCCEEEEcCCCCEEEEc
Confidence 44568889887777776521 2359999999999988764
No 2
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=69.78 E-value=6.3 Score=28.00 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=28.5
Q ss_pred EEEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEEE
Q psy10199 117 NDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 117 F~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tVt 163 (218)
|--.|.||..-...|.++-. .-.|-|+|.|.+|+.+.|.
T Consensus 5 yvitt~DG~~IvT~gKP~~D--------~dTGmysY~D~~G~~~qIn 43 (61)
T 2k57_A 5 TVITLNDGREIQAVDTPKYD--------EESGFYEFKQLDGKQTRIN 43 (61)
T ss_dssp EEEEESSSCEEEESSCCEEC--------TTTCEEEEEBTTSCEEEEE
T ss_pred eEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence 34468888887777766521 2359999999999988764
No 3
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=66.26 E-value=7.9 Score=27.52 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=28.2
Q ss_pred EEEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEEE
Q psy10199 117 NDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 117 F~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tVt 163 (218)
|--.|.||..-...|.++-. .-.|-|+|.|.+|+.+.|.
T Consensus 5 yvitT~DG~~IvT~GKP~~D--------~dTGm~sY~D~~G~~~qIn 43 (61)
T 2rb6_A 5 YIMSTKDGKMITSDSKPKLD--------KTTGMYLYYDEDGREVMIK 43 (61)
T ss_dssp EEEEETTSCEEEESSCCEEE--------TTTTEEEEECTTSCEEEEE
T ss_pred EEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence 44568888877767765521 2349999999999988764
No 4
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=64.59 E-value=5.9 Score=28.24 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=28.5
Q ss_pred EEEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEE
Q psy10199 117 NDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQT 162 (218)
Q Consensus 117 F~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tV 162 (218)
|--.|.||..-...|.++-. .-.|-|+|.|.+|+.+.|
T Consensus 5 yvitt~DG~~IvT~gKP~~D--------~dTGmysY~D~~G~~~qI 42 (62)
T 3bdu_A 5 YVLHTNDGRTIVAEGKPKVD--------DETGMISYTDAYGQQQQI 42 (62)
T ss_dssp EEEEETTSCEEEEESCCEEC--------TTTSSEEEEBTTSCEEEE
T ss_pred eEEEECCCcEEEcCCCccee--------CCCCCEEEEcCCCCEEEE
Confidence 44568889888777776521 234999999999998876
No 5
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=63.88 E-value=5.6 Score=28.28 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=27.3
Q ss_pred EEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEEE
Q psy10199 118 DFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 118 ~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tVt 163 (218)
--.|.||..-...|.++-. .-.|-|+|.|.+|+.+.|.
T Consensus 6 vitT~DG~~IvT~GKP~~D--------~dTGm~sY~D~~G~~~qIn 43 (61)
T 2jn0_A 6 VMATKDGRMILTDGKPEID--------DDTGLVSYHDQQGNAMQIN 43 (61)
T ss_dssp EEEETTSCEEEBCCCCEEE--------TTTTEEEEEBTTSCEEEEE
T ss_pred EEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence 3467888877666665421 2349999999999988764
No 6
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=57.28 E-value=7.9 Score=27.75 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=27.5
Q ss_pred EEEecCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEE
Q psy10199 117 NDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQT 162 (218)
Q Consensus 117 F~YETsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tV 162 (218)
|--.|.||..-...|.++-. .-.|-|+|.|.+|+.+.|
T Consensus 6 yVitt~DG~~IvT~GKP~~D--------~dTGm~sY~D~~G~~~qI 43 (64)
T 2ra2_A 6 YVMHTNDGRSIVTDGKPQTD--------NDTGMISYKDANGNKQQI 43 (64)
T ss_dssp EEEEETTSCEEECSSCCEEC--------TTTCSEEEECTTSCEEEE
T ss_pred EEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEE
Confidence 44568888877666665421 235999999999998876
No 7
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A* 3q1i_A* 4e67_A* 4e9c_A* 4e9d_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A 3mq8_B* 4h5x_B 4h70_B* 4h71_B* 4hco_B* ...
Probab=39.83 E-value=43 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.8
Q ss_pred CCCCCeeEEEecCCCcEEEeeeeeecCCC
Q psy10199 110 EYNIDWNNDFETGNGIAVQEQGALKNAGQ 138 (218)
Q Consensus 110 d~dGsY~F~YETsNGi~reE~G~lkn~G~ 138 (218)
|-.-.|.|+|..+||. .|.+-+.|+
T Consensus 54 DYS~KYG~GYqLsdgs----vGVlFND~T 78 (232)
T 3p34_A 54 DYSDKYGLGYQLCDNS----VGVLFNDST 78 (232)
T ss_dssp EETTTTEEEEEETTSC----EEEEETTSC
T ss_pred cccCccceEEEecCCc----EEEEEcCCc
Confidence 4444799999999999 699988776
No 8
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=31.41 E-value=93 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=18.0
Q ss_pred cCceeEeEEEEECCCCCEEEEE
Q psy10199 142 EAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 142 e~lvVrGSYSYidPDG~~~tVt 163 (218)
....++|+|.++++||....|.
T Consensus 92 p~G~M~G~y~m~~~~G~~F~v~ 113 (126)
T 1xvs_A 92 PVGVMQGQYLMIDEQGESFTVE 113 (126)
T ss_dssp SEEEEEEEEEEECTTSCEEEEE
T ss_pred CcEEEEEEEEEEECCCCEEEEE
Confidence 3468999999999999876654
No 9
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=31.09 E-value=88 Score=24.45 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.1
Q ss_pred cCceeEeEEEEECCCCCEEEEE
Q psy10199 142 EAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 142 e~lvVrGSYSYidPDG~~~tVt 163 (218)
..+.++|+|.++++||....|.
T Consensus 93 p~G~M~G~y~m~~~~G~~F~v~ 114 (127)
T 2f1e_A 93 EQGQMQGHYDMVADDGTEFIAP 114 (127)
T ss_dssp SCEEEEEEEEEEETTCCEEEEE
T ss_pred CcEEEEEEEEEEECCCCEEEEE
Confidence 4568999999999999876654
No 10
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=30.02 E-value=37 Score=29.21 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=26.3
Q ss_pred eCCCCccccCCCCCCCCCCcHHHHHHHHhcccc
Q psy10199 166 ADETGYHASGAHLPTPPPIPDEIAKAIATLPKL 198 (218)
Q Consensus 166 ADENGFrp~G~HLPtpPPiP~aI~kALa~i~~~ 198 (218)
.+++||-|.|...-...+||++|..|-+.+.++
T Consensus 221 ~~~~gYgp~~~gf~~~~~iP~~V~~A~~~l~~~ 253 (266)
T 3ca8_A 221 DDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHD 253 (266)
T ss_dssp CSTTSSSTTTTCSSCCCCCCHHHHHHHHHHHTC
T ss_pred hcccccCccCCCccccCcCCHHHHHHHHHHHHh
Confidence 568999998876655667999999998887754
No 11
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=29.28 E-value=59 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=22.8
Q ss_pred CcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEEEEE
Q psy10199 124 GIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWY 165 (218)
Q Consensus 124 Gi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tVtYt 165 (218)
+...+.-|.+. +...+.+||.| .|||||+++.+.+.
T Consensus 130 ~~va~~yGv~~-----~~~g~~~R~tF-iIDp~g~Ir~~~~~ 165 (219)
T 3tue_A 130 KNIARSYGVLE-----ESQGVAYRGLF-IIDPHGMLRQITVN 165 (219)
T ss_dssp SHHHHHTTCEE-----TTTTEECEEEE-EECTTSBEEEEEEE
T ss_pred cHHHHHcCCcc-----cCCCeeEEEEE-EECCCCeEEEEEEe
Confidence 33344445543 23446788886 89999998776543
No 12
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel beta sheet with one alpha helix, transferase; HET: TPO; 2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Probab=28.85 E-value=62 Score=28.10 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.4
Q ss_pred CCCCCeeEEEecCCCcEEEeeeeeecCCC
Q psy10199 110 EYNIDWNNDFETGNGIAVQEQGALKNAGQ 138 (218)
Q Consensus 110 d~dGsY~F~YETsNGi~reE~G~lkn~G~ 138 (218)
|-.-.|.|+|..+||. .|.+-+.|+
T Consensus 72 DYSnKYG~GYqLsdgs----vGvlFND~T 96 (259)
T 1q4k_B 72 DYSDKYGLGYQLCDNS----VGVLFNDST 96 (259)
T ss_dssp EETTTTEEEEEETTSC----EEEEETTSC
T ss_pred ccccccceeEEecCCc----EEEEEeCCc
Confidence 3444799999999999 799888775
No 13
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=28.85 E-value=89 Score=24.76 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=18.0
Q ss_pred cCceeEeEEEEECCCCCEEEEE
Q psy10199 142 EAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 142 e~lvVrGSYSYidPDG~~~tVt 163 (218)
..+.++|+|.++++||..+.|.
T Consensus 92 p~G~M~G~y~m~~~~G~~F~v~ 113 (134)
T 1tza_A 92 PFGIMYGTYGMVSESGEHFNAI 113 (134)
T ss_dssp SEEEEEEEEEEEETTCCEEEEE
T ss_pred CceEEEEEEEEEECCCCEEEEE
Confidence 4468999999999999876654
No 14
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=28.41 E-value=78 Score=23.58 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=22.3
Q ss_pred eEeEEEEECCCCCEEEEEEEeCCCCccccCCCCCCCCCCcHHHHHHHHhc
Q psy10199 146 AQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATL 195 (218)
Q Consensus 146 VrGSYSYidPDG~~~tVtYtADENGFrp~G~HLPtpPPiP~aI~kALa~i 195 (218)
.+.+| .+|++|+++.+....+ |+..|..++++++|+-|
T Consensus 119 ~p~tf-lID~~G~I~~~~~~~~-----------~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 119 KRAVF-VIDKEGKVRYKWVSDD-----------PTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp CEEEE-EECTTSBEEEEEEESS-----------TTCCCCHHHHHHHHHHT
T ss_pred eeeEE-EECCCCEEEEEEECCC-----------CCCCCCHHHHHHHHHHh
Confidence 34443 5788998765443322 22334457888888765
No 15
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=27.65 E-value=93 Score=24.83 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=17.9
Q ss_pred cCceeEeEEEEECCCCCEEEEE
Q psy10199 142 EAQTAQGQSSYTSPDGTPIQTQ 163 (218)
Q Consensus 142 e~lvVrGSYSYidPDG~~~tVt 163 (218)
..+.++|+|.++++||....|.
T Consensus 97 p~G~M~G~y~m~~~~G~~F~v~ 118 (139)
T 1xq4_A 97 PIGTMRGTYHCVGENGIPFEVP 118 (139)
T ss_dssp SEEEEEEEEEEEETTSCEEEEE
T ss_pred CceEEEEEEEEEeCCCCEEEEE
Confidence 4468999999999999876654
No 16
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=26.71 E-value=48 Score=27.81 Aligned_cols=45 Identities=9% Similarity=-0.073 Sum_probs=26.0
Q ss_pred eEeEEEEECCCCCEEEEEEEeCCCCccccCCCCCCCCCCcHHHHHHHHhccccCCCC
Q psy10199 146 AQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVEEN 202 (218)
Q Consensus 146 VrGSYSYidPDG~~~tVtYtADENGFrp~G~HLPtpPPiP~aI~kALa~i~~~P~~~ 202 (218)
.+.+| .+|+||+++-+....+ ++..|-.++++++|+.+.....+.
T Consensus 137 ~p~tf-vID~dG~I~~~~~~~~-----------~~~~pd~~evl~~L~~l~~~~~~~ 181 (224)
T 3keb_A 137 SPAII-LADAANVVHYSERLAN-----------TRDFFDFDAIEKLLQEGEQQAMAA 181 (224)
T ss_dssp CCEEE-EECTTCBEEEEEECSB-----------TTCCCCHHHHHHHHHHHHHHC---
T ss_pred cCEEE-EEcCCCEEEEEEecCC-----------CCCCCCHHHHHHHHHHhhhccccc
Confidence 44444 6788898766544332 333455688888887766555433
No 17
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=25.01 E-value=77 Score=26.51 Aligned_cols=47 Identities=21% Similarity=0.166 Sum_probs=28.0
Q ss_pred cCceeEeEEEEECCCCCEEEEEEEeCCCCccccCCCCCCCCCCcHHHH---HHHHhccccCCC
Q psy10199 142 EAQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIA---KAIATLPKLVEE 201 (218)
Q Consensus 142 e~lvVrGSYSYidPDG~~~tVtYtADENGFrp~G~HLPtpPPiP~aI~---kALa~i~~~P~~ 201 (218)
+.+.+||.| .|||||+++-+.+.. +|+++-+ .+++ +||++..+|.+.
T Consensus 139 ~g~~~R~tF-iID~~G~Ir~~~v~~-----------~~~grn~-dEiLr~l~AlQ~~~~~~~~ 188 (216)
T 3sbc_A 139 EGVALRGLF-IIDPKGVIRHITIND-----------LPVGRNV-DEALRLVEAFQWTDKNGTV 188 (216)
T ss_dssp TTEECEEEE-EECTTSBEEEEEEEC-----------TTBCCCH-HHHHHHHHHHHHHHHHCCB
T ss_pred CCceeeEEE-EECCCCeEEEEEEcC-----------CCCCCCH-HHHHHHHHHhhhHhhcCCC
Confidence 345678876 789999887765443 2333222 4454 566666666543
No 18
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=23.23 E-value=65 Score=22.52 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=17.6
Q ss_pred eeecccCCCCCeeEEEecCCCcEE
Q psy10199 104 NIDWNNEYNIDWNNDFETGNGIAV 127 (218)
Q Consensus 104 ~~e~~nd~dGsY~F~YETsNGi~r 127 (218)
+++.-.+.+|+|.|.+..+||...
T Consensus 2 ~Fei~~~~~G~frfrLka~NGevI 25 (64)
T 3bid_A 2 YFEIYKDAKGEYRWRLKAANHEII 25 (64)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEE
T ss_pred EEEEEECCCCCEEEEEEeCCCCEE
Confidence 455566778888888888888753
No 19
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=22.55 E-value=74 Score=24.09 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=21.9
Q ss_pred EECCCCCEEEEEEEeCCCCccccCCCCCCCCCCcHHHHHHHHhccc
Q psy10199 152 YTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPK 197 (218)
Q Consensus 152 YidPDG~~~tVtYtADENGFrp~G~HLPtpPPiP~aI~kALa~i~~ 197 (218)
.+|+||+++.+.+.. .|...|-.++++++|+.++.
T Consensus 126 lID~~G~I~~~~~~~-----------~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 126 IVKPDGTVAYKWVTD-----------NPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp EECTTSBEEEEEECS-----------CTTCCCCHHHHHHHHHHHHH
T ss_pred EECCCCEEEEEEEeC-----------CCCCCCCHHHHHHHHHHHhc
Confidence 578999876543322 23333446888998877654
No 20
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=22.52 E-value=52 Score=23.31 Aligned_cols=17 Identities=29% Similarity=0.306 Sum_probs=13.6
Q ss_pred EeEEEEECCCCCEEEEEE
Q psy10199 147 QGQSSYTSPDGTPIQTQW 164 (218)
Q Consensus 147 rGSYSYidPDG~~~tVtY 164 (218)
.|.| +.||||..+++..
T Consensus 116 ~g~~-~~DPdG~~iel~~ 132 (139)
T 1twu_A 116 GGVT-IEDPDGWRIVFMN 132 (139)
T ss_dssp SEEE-EECTTCCEEEEES
T ss_pred CCeE-EECCCCCEEEEEE
Confidence 3567 9999999988763
No 21
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A
Probab=20.95 E-value=1.3e+02 Score=26.72 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=37.2
Q ss_pred cCCCcEEEeeeeeecCCCccccCceeEeEEEEECCCCCEEEEEEEeCCC--Ccccc
Q psy10199 121 TGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADET--GYHAS 174 (218)
Q Consensus 121 TsNGi~reE~G~lkn~G~~d~e~lvVrGSYSYidPDG~~~tVtYtADEN--GFrp~ 174 (218)
.+||++.+..=.+........-.-.-+.|-||+..-.+.+.|.|+.|.. =||.-
T Consensus 38 ~aNGVkpS~~~~v~~p~~~kav~~~~~Hsisytlsr~~~VvVeY~~D~~tDMFQIG 93 (263)
T 3ega_A 38 KANGVKPSTVHMISTPQASKAISCKGQHSISYTLSRNQTVVVEYTHDKDTDMFQVG 93 (263)
T ss_dssp SCCEEEEEEEEEEECCTTCCCCCBTTBEEEEEECSSSEEEEEEEEEETTEEEEEEE
T ss_pred ccCCccccceEEecCcccchhhhccccceEEEEecCCceeeeeeecCCCcchhhhc
Confidence 4788887665555433321111124578999999999999999999964 67763
Done!