RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10199
(218 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.002
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Query: 187 EIAKAIATLPKLVEENYAPNPQPA 210
+ K A+L KL YA + PA
Sbjct: 21 ALKKLQASL-KL----YADDSAPA 39
Score = 30.3 bits (67), Expect = 0.30
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 19/41 (46%)
Query: 129 EQGALKNAGQKDLEAQTAQGQSS---YTSPDGTP---IQTQ 163
E+ ALK K L+ +S Y + D P I+
Sbjct: 18 EKQALK----K-LQ-------ASLKLY-ADDSAPALAIKAT 45
>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus
interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB:
1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A*
Length = 657
Score = 31.4 bits (71), Expect = 0.24
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 55 YNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNID 114
Y+ + N E + + E +I N +++ W+ + W + Y
Sbjct: 155 YSAKMTQKPGTFNVSFTGTKKNREQRVAYFGE-DIGMNI-HHVTWHMDFPFWWEDSYGYH 212
Query: 115 WNNDFE 120
+ E
Sbjct: 213 LDRKGE 218
Score = 30.3 bits (68), Expect = 0.56
Identities = 9/67 (13%), Positives = 24/67 (35%)
Query: 2 STTWNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNN 61
S + Y+ T + N E + + + N++++ W+ ++ W +
Sbjct: 148 SEVIDKAYSAKMTQKPGTFNVSFTGTKKNREQRVAYFGEDIGMNIHHVTWHMDFPFWWED 207
Query: 62 VYNIDWN 68
Y +
Sbjct: 208 SYGYHLD 214
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 29.8 bits (66), Expect = 0.61
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 2/115 (1%)
Query: 2 STTWNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNN 61
S + N N ++ + + N N + NV N G
Sbjct: 225 SWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTV 284
Query: 62 VYNIDWNNVYNIDWNNEYNIGWNNEY--NIDWNNVYNIDWNNVYNIDWNNEYNID 114
+ N + N N + + G + + N+ + + + + W+
Sbjct: 285 INNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAAS 339
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE;
2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A
Length = 609
Score = 29.8 bits (66), Expect = 0.68
Identities = 13/84 (15%), Positives = 26/84 (30%)
Query: 35 IDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNV 94
+D NN + I + E N+ +N+ ++ +D + +
Sbjct: 115 LDGNNKRLGQGISGIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGD 174
Query: 95 YNIDWNNVYNIDWNNEYNIDWNND 118
N NI N + +D
Sbjct: 175 GTTAPNPSENIWIENCEATGFGDD 198
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 29.6 bits (67), Expect = 0.76
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 54 EYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNI 113
E + + + +W + +W +E N Y N + DW +
Sbjct: 13 ESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFK-DWPGAFEE 71
Query: 114 DWNNDFETGNGIAVQEQGALKNA 136
G+ ++G L
Sbjct: 72 ----------GLKRLKEGDLPVT 84
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 29.7 bits (66), Expect = 0.76
Identities = 10/136 (7%), Positives = 32/136 (23%), Gaps = 8/136 (5%)
Query: 1 MSTTWNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWN 60
+ N + + N ++ ++ + T + Y W
Sbjct: 215 GEYLFTNTLD---MSTNAFSTKNVAFNHDSSSFDHTVDGFLTADTWYRPKSILANGTTWR 271
Query: 61 NVYNIDWNNV-----YNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDW 115
+ + D + N + Y + Y + + + +
Sbjct: 272 DSTDKDMRPLITVWWPNKNVQVNYLNFMKANGLLTTAAQYTLHSDQYDLNQAAQDVQVAI 331
Query: 116 NNDFETGNGIAVQEQG 131
+ +G ++
Sbjct: 332 ERRIASEHGTDWLQKL 347
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND
protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron}
SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Length = 527
Score = 29.8 bits (67), Expect = 0.79
Identities = 9/127 (7%), Positives = 29/127 (22%)
Query: 1 MSTTWNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWN 60
+ + V ++ W+ + ++N ++
Sbjct: 260 LPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPML 319
Query: 61 NVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFE 120
+ D + + D D +Y+ I +
Sbjct: 320 PADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISG 379
Query: 121 TGNGIAV 127
+G+++
Sbjct: 380 FTDGLSI 386
Score = 27.1 bits (60), Expect = 5.4
Identities = 10/126 (7%), Positives = 27/126 (21%), Gaps = 7/126 (5%)
Query: 1 MSTTWNNVYNIDWNNVYNTDW-------NNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNN 53
++ W+ ++ N E + I T + D +
Sbjct: 284 VAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEH 343
Query: 54 EYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNI 113
D + + + + + + W N + +
Sbjct: 344 GIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHAT 403
Query: 114 DWNNDF 119
+ D
Sbjct: 404 YPDTDI 409
Score = 26.7 bits (59), Expect = 6.5
Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 6/137 (4%)
Query: 36 DWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWN------NEYNI 89
D N + + I + + + GW+
Sbjct: 249 DENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQK 308
Query: 90 DWNNVYNIDWNNVYNIDWNNEYNIDWNNDFETGNGIAVQEQGALKNAGQKDLEAQTAQGQ 149
++N+ ++ + D D E + L G
Sbjct: 309 FFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGG 368
Query: 150 SSYTSPDGTPIQTQWYA 166
D T +
Sbjct: 369 RRKIQTDAISGFTDGLS 385
>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase,
cobalamin, colicin, TRAN protein; HET: MPG; 1.95A
{Escherichia coli} SCOP: f.4.3.3 PDB: 1nqg_A* 1nqh_A*
1ujw_A* 1nqe_A* 2ysu_A 3m8b_A* 3m8d_A* 3rgm_A* 3rgn_A*
2gsk_A* 1nqf_A*
Length = 594
Score = 29.3 bits (66), Expect = 0.88
Identities = 10/122 (8%), Positives = 40/122 (32%), Gaps = 8/122 (6%)
Query: 6 NNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWN--NDTTWNNVYNIDWNNEYNIGWNNVY 63
+ + ++ + ++ + + +D Y+ W+
Sbjct: 195 DGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGL 254
Query: 64 NIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFETGN 123
+ ++ +++ + +++ Y +++ +D +Y + W N+ G+
Sbjct: 255 RYNGEL-----IKSQLITSYSHSKDYNYDPHYG-RYDSSATLDEMKQYTVQWANNVIVGH 308
Query: 124 GI 125
G
Sbjct: 309 GS 310
>3gqn_A Preneck appendage protein; beta helix, beta barrel, ATP binding,
viral protein; HET: ATP; 2.15A {Bacillus phage PHI29}
PDB: 3suc_A*
Length = 772
Score = 29.1 bits (64), Expect = 1.3
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 35 IDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNNVYNIDWN----NEYNIGWNNEYNID 90
+D NN + I + E N+ +N+ ++ +D + G + Y D
Sbjct: 115 LDGNNKRLGQGISGIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGD 174
Query: 91 WNNVYNIDWN 100
N N
Sbjct: 175 GTTAPNPSEN 184
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase
RV2981C, structural genomics, TB structural GENO
consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Length = 373
Score = 28.8 bits (65), Expect = 1.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 164 WYADETGYHASGAHLPTPPPIPDEIAKAI 192
+Y T Y A L P + D++A+AI
Sbjct: 270 FYDFATKYLDDAAELDVPAKVDDQVAEAI 298
>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus
polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A
1ll1_A 1oxy_A
Length = 628
Score = 28.7 bits (64), Expect = 1.5
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 59 WNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNN 117
++ + + EY + + E ++ N ++ W+ VY WN +Y +
Sbjct: 138 FDESPILVDVQDTGNILDPEYRLAYYRE-DVGINA-HHWHWHLVYPSTWNPKYFGKKKD 194
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 28.7 bits (65), Expect = 1.5
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 168 ETGYHASGAHLPTPPPIPDEIAKAI 192
E + A + P + E I
Sbjct: 248 EPEKGSENAVITVPADLSAEERGRI 272
>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand,
melanin biosynthesis, metal-bindin monooxygenase,
oxidoreductase, secreted; 1.97A {Manduca sexta}
Length = 684
Score = 28.4 bits (63), Expect = 2.4
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 52 NNEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEY 111
+N G N+ N N E + + E +I N ++ W+ VY D +
Sbjct: 167 SNVVISGSRMPVNVPINYTANTT-EPEQRVAYFRE-DIGINL-HHWHWHLVYPFDSADRS 223
Query: 112 NIDWNNDFE 120
++ + E
Sbjct: 224 IVNKDRRGE 232
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus
thuringiensis} PDB: 3eb7_A
Length = 589
Score = 27.9 bits (61), Expect = 2.7
Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 3/137 (2%)
Query: 9 YNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWN 68
+N + +T ++ D+ +I + + Y W + I +
Sbjct: 259 SAPSFNTLESTFIRGKHLFDFITRLSIYTGRSSFSASNYLKKWIG-HQISSQPIGGSIQT 317
Query: 69 NVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFETGNGIAVQ 128
Y + + +VY + ++Y F+
Sbjct: 318 QTYGTTSGSSVI--ATQQIGFTGFDVYKTLSTAGVLFAYTSKYYGVSKVVFDAIYPDNKY 375
Query: 129 EQGALKNAGQKDLEAQT 145
+ N G + + AQ
Sbjct: 376 KTTFTYNPGSEGIGAQE 392
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 27.6 bits (61), Expect = 4.2
Identities = 14/87 (16%), Positives = 29/87 (33%)
Query: 12 DWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNNVY 71
W N EY+ N D + ++ +E + W ++ D+
Sbjct: 259 AWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGA 318
Query: 72 NIDWNNEYNIGWNNEYNIDWNNVYNID 98
++D+ NE ++ N + D
Sbjct: 319 DVDYENEAVQNDVIDWGQWIINNIDFD 345
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 27.3 bits (60), Expect = 4.3
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 4/98 (4%)
Query: 23 NEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNNVYNIDWNNEYNIG 82
+ + ++D +N NI+ N ++ ++I +N N
Sbjct: 119 HSFTTQRPQFVDLDRVRVEYFNAKENINSFLRKQSACNIIFRTAIVRAHHIRFNENLNTY 178
Query: 83 ----WNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWN 116
+ EY N I Y +
Sbjct: 179 VDWSFVLEYMKYVNKFVRIFNFPFYFRGEVYDPFETLT 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 4.4
Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 39/109 (35%)
Query: 128 QEQGALKNAGQKDLEAQT-AQ--GQSSYTSPDGTPIQTQWYADE--TGYHASGAHLPTPP 182
+ AL A + AQ A GQ G T Y +E Y T
Sbjct: 140 KSNSALFRAVGEG-NAQLVAIFGGQ-------GN---TDDYFEELRDLYQ-------TYH 181
Query: 183 PIPDE-IAKAIATLPKLVEENYAP---------------NPQPAPGRGF 215
+ + I + TL +L+ NP P + +
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB:
2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Length = 322
Score = 26.8 bits (60), Expect = 5.7
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 164 WYADETGYHASGAHLPTPPPIPDEIAKAIATL 195
+Y ET Y A L P P+ + + L
Sbjct: 225 FYDYETKYTPGRAELLIPAPLDPGTQETVQEL 256
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus
subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Length = 364
Score = 26.4 bits (59), Expect = 7.0
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 164 WYADETGYHASGAHLPTPPPIPDEIAKAI 192
+Y ++ Y L P + +++ +
Sbjct: 245 FYDYKSKYKDGKVQLQIPADLDEDVQLTL 273
>2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme,
pneumococcal cell WALL degradation, hydrolase,
glycosidase, multimodular; HET: NAG AMV; 1.69A
{Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB:
2ixv_A* 2j8f_A* 2ixu_A* 1h09_A 1oba_A
Length = 339
Score = 26.5 bits (58), Expect = 7.1
Identities = 10/105 (9%), Positives = 23/105 (21%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYN 64
Y+ N D+ N+ + + + N + +
Sbjct: 121 KPIYYSYKPFTHDNVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNP 180
Query: 65 IDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNN 109
D N V D ++ + + + W
Sbjct: 181 FDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEK 225
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein;
alpha-alpha superhelix, structural genomics; HET: MSE;
1.88A {Bacteroides thetaiotaomicron}
Length = 460
Score = 26.8 bits (59), Expect = 7.4
Identities = 7/69 (10%), Positives = 17/69 (24%), Gaps = 2/69 (2%)
Query: 14 NNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIG-WNNVYNIDWNNVYN 72
N + + + +D ++V + + +N+V
Sbjct: 18 NGAWYNLFEYGTTYANIGYRALQCQDDMMASDVVSRPKYGFNSSYQFNDVAIPSDGRTSF 77
Query: 73 IDWNNEYNI 81
W Y
Sbjct: 78 A-WYLIYKT 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.132 0.450
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,870,923
Number of extensions: 234870
Number of successful extensions: 1467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1091
Number of HSP's successfully gapped: 394
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.6 bits)