RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10199
(218 letters)
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 28.8 bits (63), Expect = 0.52
Identities = 10/113 (8%), Positives = 34/113 (30%)
Query: 10 NIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNN 69
++ V + N E + ++ + D+ N + W+ + G + + +
Sbjct: 112 DVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISR 171
Query: 70 VYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFETG 122
++ + + N +++ + D + + E
Sbjct: 172 IFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELS 224
Score = 25.3 bits (54), Expect = 6.2
Identities = 9/108 (8%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYN 64
+ D+ + +++ W + DW+ + ++ + + N
Sbjct: 131 YQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSEN 190
Query: 65 IDWNNVYNIDWN--NEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNE 110
+++ + D + + + ++ I + N ++D +
Sbjct: 191 GNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKF 238
Score = 25.3 bits (54), Expect = 6.3
Identities = 11/115 (9%), Positives = 35/115 (30%), Gaps = 2/115 (1%)
Query: 3 TTWNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNV 62
T V + N + ++ + D+ + +D W+ + + + + + +
Sbjct: 113 VTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRI 172
Query: 63 YNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNI--DWNNEYNIDW 115
+ + N ++ D + + + NE ++D
Sbjct: 173 FKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDG 227
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
{Escherichia coli [TaxId: 562]}
Length = 200
Score = 28.1 bits (62), Expect = 0.63
Identities = 10/46 (21%), Positives = 12/46 (26%)
Query: 164 WYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQP 209
W GY S T P P + P+ QP
Sbjct: 55 WTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQP 100
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
{Thermus thermophilus [TaxId: 274]}
Length = 107
Score = 27.1 bits (60), Expect = 0.77
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 184 IPDEIAKAIATLPKLVEENYAPNPQ----------PAPGRGFG 216
+P++ + + + E P + P P FG
Sbjct: 16 VPEDFKRGLQGVHVFPEAKPEPGLEGVWRLGEYLDPGPPSAFG 58
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 27.6 bits (61), Expect = 1.3
Identities = 7/108 (6%), Positives = 27/108 (25%), Gaps = 6/108 (5%)
Query: 18 NTDWNNEYNIDWNNEYNIDWNNDTTWNNVY-NIDWNNEYNIGWNNVYNIDWNNVYNIDWN 76
+ + ++ ++ + V + + W N
Sbjct: 109 KSKYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGN 168
Query: 77 NEYNIGWNNEYNIDW-----NNVYNIDWNNVYNIDWNNEYNIDWNNDF 119
+ Y+ Y + + D N + ++ ++ ++
Sbjct: 169 DIYDTLQKQNYTLMSWKNPPSYRRFFDVNTLIGVNVEKDHVFQESHSK 216
Score = 26.8 bits (59), Expect = 2.2
Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 11/115 (9%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYN 64
+ + + D + + I + D + + W N++Y+
Sbjct: 115 YFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYF--KWKLPLTEVGNDIYD 172
Query: 65 IDWNNVYN-IDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNID----WNNEYNID 114
Y + W N + D N + ++ + + ++D
Sbjct: 173 TLQKQNYTLMSWKNP----PSYRRFFDVNTLIGVNVEKDHVFQESHSKILDLDVD 223
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 27.6 bits (60), Expect = 1.4
Identities = 19/174 (10%), Positives = 42/174 (24%), Gaps = 20/174 (11%)
Query: 25 YNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWN 84
Y+I + I+ + + NI + ++ I +
Sbjct: 139 YDIPGRSAVPIEPDTIRALASHPNIVGVKDAKADLHSGAQIMA-------DTGLAYYSGD 191
Query: 85 NEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFETGNGIAVQEQGALKNAGQKDLEAQ 144
+ N+ W + + +V + + A + A+
Sbjct: 192 DALNLPWLAMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCN------ 245
Query: 145 TAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKL 198
S G ++ G LP P++I A +
Sbjct: 246 -------AMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAA 292
>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica
napus) [TaxId: 3708]}
Length = 297
Score = 27.0 bits (58), Expect = 1.8
Identities = 15/184 (8%), Positives = 39/184 (21%), Gaps = 14/184 (7%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYN 64
++ N I ++ + + + + ++
Sbjct: 119 SIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTY 178
Query: 65 IDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFETGNG 124
I + + E + N+ +
Sbjct: 179 IASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFID 238
Query: 125 IAVQEQGA---LKNAGQKDLEAQT----AQGQSSYTSPDGTPIQTQWYADETGYHASGAH 177
++ ++ D +S + G I Y D G ++ G
Sbjct: 239 TMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAIT--GATI----YVD-NGLNSMGVA 291
Query: 178 LPTP 181
L +P
Sbjct: 292 LDSP 295
>d1xp4a1 b.105.1.1 (A:294-386) D,D-carboxypeptidase DacA, C-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 93
Score = 25.2 bits (55), Expect = 2.7
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 179 PTPPPIP--DEIAKAIATLPKLVEENYAPNPQPA 210
P P+ + L+ + Y +P+
Sbjct: 57 AIPAPLEAGTVVGHLTYEDKDLIGQGYITTERPS 90
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 26.2 bits (56), Expect = 3.0
Identities = 7/96 (7%), Positives = 28/96 (29%)
Query: 25 YNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNNVYNIDWNNEYNIGWN 84
D ++N + ++ +G + N + +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 85 NEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFE 120
+ ++ NN+ + + ++ + + N+ +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 26.3 bits (57), Expect = 3.3
Identities = 9/98 (9%), Positives = 18/98 (18%)
Query: 4 TWNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVY 63
W + W + +D+ N I + +
Sbjct: 67 EWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRMWRKTRS 126
Query: 64 NIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNN 101
D N ++ GW +
Sbjct: 127 TNAGTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSA 164
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria
meningitidis [TaxId: 487]}
Length = 225
Score = 25.9 bits (55), Expect = 4.2
Identities = 8/115 (6%), Positives = 25/115 (21%), Gaps = 1/115 (0%)
Query: 6 NNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYNI 65
+ ++ + + + I+ + +
Sbjct: 104 QPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLEQ 163
Query: 66 DWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFE 120
+ N + I N + +Y + + +ID D +
Sbjct: 164 PRQQLPQAFRPNGAIYINDTASLIANNCFFIAP-TKLYIMSHQDSIDIDTELDLQ 217
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella
typhimurium [TaxId: 90371]}
Length = 411
Score = 25.9 bits (56), Expect = 4.8
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 152 YTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIA 193
D W + YH + P+ +A A+A
Sbjct: 362 ELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVA 403
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 25.5 bits (54), Expect = 4.9
Identities = 14/159 (8%), Positives = 36/159 (22%), Gaps = 3/159 (1%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDW---NNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNN 61
+ + + + YN + ID + +V + + + +
Sbjct: 89 FKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLS 148
Query: 62 VYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFET 121
+ + + +Y +N +
Sbjct: 149 PGEKSTTIDTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLAR 208
Query: 122 GNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPI 160
+ Q L + + + A G S P G +
Sbjct: 209 SRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPRGKIV 247
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 25.3 bits (54), Expect = 5.7
Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 7/135 (5%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYN 64
+ ++ N + + + + + + N+
Sbjct: 113 VQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVV 172
Query: 65 IDWNNVYNIDWNNEYNIGWNNEYNIDWNNV------YNIDWNNVYNIDWNNEYNIDWNND 118
N + + Y I +V Y ++ + + NN
Sbjct: 173 KLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNI 232
Query: 119 FETGNGIA-VQEQGA 132
TG+G+ +E GA
Sbjct: 233 TATGDGVLMAKEIGA 247
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 25.5 bits (54), Expect = 5.8
Identities = 8/100 (8%), Positives = 27/100 (27%)
Query: 18 NTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYNIDWNNVYNIDWNN 77
+ E N + + + ++G + N + ++
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 78 EYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNN 117
+ + + N V ++ + ++ + NN
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Score = 25.2 bits (53), Expect = 7.5
Identities = 6/116 (5%), Positives = 36/116 (31%)
Query: 2 STTWNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNN 61
+ ++ N+ +++ + ++ + + + ++D + +G +
Sbjct: 49 AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 62 VYNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNN 117
++D + + + + N + + + ++ + N
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164
Score = 25.2 bits (53), Expect = 8.1
Identities = 6/113 (5%), Positives = 28/113 (24%), Gaps = 2/113 (1%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNID--WNNEYNIGWNNV 62
+ + + N + + N+ ++ N ++
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
Query: 63 YNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDW 115
+ + + N ++ + ++ + NN+ + +
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Score = 25.2 bits (53), Expect = 8.2
Identities = 7/122 (5%), Positives = 30/122 (24%), Gaps = 9/122 (7%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNN--VYNIDWNNEYNIGWNNV 62
N + + + + + N ++ ++ + N ++ +
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 63 YNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNN-------VYNIDWNNEYNIDW 115
++ + NN + + ++ N W ++
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSS 257
Query: 116 NN 117
+
Sbjct: 258 SE 259
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 450
Score = 25.0 bits (53), Expect = 7.9
Identities = 11/127 (8%), Positives = 31/127 (24%)
Query: 5 WNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNVYN 64
N +N +++Y N + + + + ++ N GW NV
Sbjct: 211 DNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGGNYGWPNVAG 270
Query: 65 IDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFETGNG 124
++ Y + + + V + + + +
Sbjct: 271 YKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDT 330
Query: 125 IAVQEQG 131
+
Sbjct: 331 YNYNDPT 337
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 25.1 bits (53), Expect = 8.0
Identities = 10/120 (8%), Positives = 28/120 (23%)
Query: 3 TTWNNVYNIDWNNVYNTDWNNEYNIDWNNEYNIDWNNDTTWNNVYNIDWNNEYNIGWNNV 62
+ VY+ N+ + ++ + + + G +
Sbjct: 63 SKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFL 122
Query: 63 YNIDWNNVYNIDWNNEYNIGWNNEYNIDWNNVYNIDWNNVYNIDWNNEYNIDWNNDFETG 122
+ +N I V + N + + + ++ E G
Sbjct: 123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 182
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.132 0.450
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,022,799
Number of extensions: 52922
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 235
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.9 bits)