Query psy1020
Match_columns 132
No_of_seqs 139 out of 1325
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 20:23:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0202|consensus 99.9 5.2E-27 1.1E-31 209.9 3.0 105 1-132 746-850 (972)
2 KOG0203|consensus 99.9 6.9E-25 1.5E-29 196.4 6.0 125 1-132 774-906 (1019)
3 PF00689 Cation_ATPase_C: Cati 99.8 1.2E-20 2.5E-25 141.2 6.9 69 22-90 1-69 (182)
4 TIGR01523 ATPase-IID_K-Na pota 99.7 9E-18 1.9E-22 155.6 9.2 90 1-90 814-908 (1053)
5 TIGR01522 ATPase-IIA2_Ca golgi 99.7 6.7E-17 1.5E-21 147.3 9.7 88 1-88 686-773 (884)
6 KOG0204|consensus 99.7 1.1E-16 2.3E-21 144.4 5.9 87 1-87 807-893 (1034)
7 TIGR01116 ATPase-IIA1_Ca sarco 99.6 6.9E-16 1.5E-20 141.3 9.6 88 1-88 698-785 (917)
8 TIGR01106 ATPase-IIC_X-K sodiu 99.6 1.4E-15 3.1E-20 140.3 9.7 88 1-88 752-841 (997)
9 TIGR01517 ATPase-IIB_Ca plasma 99.6 2.6E-15 5.5E-20 137.8 8.6 89 1-89 737-825 (941)
10 PRK15122 magnesium-transportin 99.6 2.2E-15 4.7E-20 138.0 7.5 84 1-87 705-788 (903)
11 COG0474 MgtA Cation transport 99.5 7.9E-14 1.7E-18 128.0 10.7 91 1-91 707-799 (917)
12 PRK10517 magnesium-transportin 99.5 3.9E-14 8.4E-19 129.9 7.4 80 1-87 705-785 (902)
13 TIGR01524 ATPase-IIIB_Mg magne 99.5 1.1E-13 2.4E-18 126.3 8.8 81 1-87 670-750 (867)
14 TIGR01657 P-ATPase-V P-type AT 98.9 2.6E-09 5.7E-14 99.5 8.0 81 3-88 869-949 (1054)
15 TIGR01647 ATPase-IIIA_H plasma 98.8 1.3E-08 2.9E-13 92.1 9.1 80 1-89 602-681 (755)
16 TIGR01652 ATPase-Plipid phosph 98.3 1.2E-06 2.6E-11 81.9 6.3 89 1-89 836-933 (1057)
17 COG0109 CyoE Polyprenyltransfe 42.8 2E+02 0.0044 24.1 9.9 49 10-58 34-86 (304)
18 PF11804 DUF3325: Protein of u 42.0 41 0.00089 23.6 3.5 29 36-64 8-36 (106)
19 TIGR01475 ubiA_other putative 36.8 57 0.0012 26.1 4.0 30 46-75 58-88 (282)
20 PRK09459 pspG phage shock prot 33.3 1.5E+02 0.0032 19.9 4.9 55 77-131 11-72 (76)
21 PLN02776 prenyltransferase 29.0 1.5E+02 0.0032 25.1 5.4 38 35-72 40-78 (341)
22 PHA00726 hypothetical protein 25.9 96 0.0021 21.4 3.1 23 57-79 27-50 (89)
23 KOG0208|consensus 25.9 90 0.0019 30.5 3.8 64 22-88 937-1000(1140)
24 PF05570 DUF765: Circovirus pr 25.1 31 0.00067 18.7 0.4 16 48-63 8-23 (29)
No 1
>KOG0202|consensus
Probab=99.93 E-value=5.2e-27 Score=209.89 Aligned_cols=105 Identities=67% Similarity=1.181 Sum_probs=100.7
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|+||+|++|+..++++.++|.|.||.|+|+||+|++||++||.+||+||+++|+|+||||+++++++++.++.
T Consensus 746 ~~lSsnVgev~~I~l~aa~~~p~pL~pvQiLWiNlvtDG~PA~aLG~ep~D~DiM~kpPR~~~~~iit~~l~~------- 818 (972)
T KOG0202|consen 746 YLLSSNVGEVVLIFLTAAFGIPEPLIPVQILWINLVTDGPPATALGFEPVDPDIMKKPPRDSKDGIITGWLIF------- 818 (972)
T ss_pred HHHhhhHHHHHHHHHHHHhCCCCcccchhhheeeeeccCCchhhcCCCCCChhHHhCCCCCCCCCeeeHHHHH-------
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhheeeeecCCCCcccccC
Q psy1020 81 YVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYGPQMTYWQ 132 (132)
Q Consensus 81 i~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (132)
||+.+|.|++..|+++|.+|+.+. |+..||+|
T Consensus 819 ------------------r~l~~g~~vg~~Tv~~f~~~~~~~--~~~vt~~~ 850 (972)
T KOG0202|consen 819 ------------------RYLAIGIIVGVATVGVFVWWMYGA--DGKVTYRQ 850 (972)
T ss_pred ------------------HHHHhheeeeeeEhHhhhHHHhcC--CCCcChhh
Confidence 999999999999999999999987 88888876
No 2
>KOG0203|consensus
Probab=99.91 E-value=6.9e-25 Score=196.37 Aligned_cols=125 Identities=34% Similarity=0.539 Sum_probs=117.7
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCC-CCCCCCcHHHH-HHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRK-ADEGLISGWLF-FRYLAI 78 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~-~~~~l~~~~l~-~~i~~~ 78 (132)
|.|++|++|+.++++..++|+|+|+++++||+|++.||..||++|++|+||+|+|+|+||+ ++++++|++++ ..++..
T Consensus 774 YTLTsNipEI~PfL~fi~~giPLplgtitIL~IDLgTDmvPAiSLAYE~aEsDIM~r~PR~p~~D~LVN~rLi~~aY~qI 853 (1019)
T KOG0203|consen 774 YTLTSNIPEITPFLLFILFGIPLPLGTVTILCIDLGTDIVPAISLAYEKAESDIMLRPPRNPKDDKLVNKRLISYSYLQI 853 (1019)
T ss_pred HHHHhcchhHhHHHHHHHhCCCcccchhhhhhhHhhcccchhhhHhccCchhhHHhcCCCCCcccccccchhHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999 58999999998 589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhheeeee------cCCCCcccccC
Q psy1020 79 GGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLY------SPYGPQMTYWQ 132 (132)
Q Consensus 79 G~i~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 132 (132)
|.++++++|+ ++|..++..++..-..++...-|.+. ++|||||||||
T Consensus 854 G~iqa~agF~-------tYFvima~nGf~P~~L~~ir~~W~d~~~~Dl~DsyGQeWtyeq 906 (1019)
T KOG0203|consen 854 GMIQALAGFF-------TYFVIMAENGFLPRTLVGLREDWDDDGVNDLTDSYGQEWTYEQ 906 (1019)
T ss_pred HHHHHHHHHH-------HHHHHHHHcCCChHHHHhhHHhhhhhhhhhhhhhccccccHHH
Confidence 9999998775 77888899999999999999999876 89999999998
No 3
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=99.83 E-value=1.2e-20 Score=141.24 Aligned_cols=69 Identities=51% Similarity=0.783 Sum_probs=58.7
Q ss_pred CCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy1020 22 PEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEG 90 (132)
Q Consensus 22 p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~i~a~~~~~~~ 90 (132)
|.|++|+|+||+|+++|.+|++++++||+|+|+|+||||+++++++|++++.+++.+|.++++.++...
T Consensus 1 P~Pl~~~qiL~inli~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f 69 (182)
T PF00689_consen 1 PLPLTPIQILWINLITDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAF 69 (182)
T ss_dssp S-SS-HHHHHHHHHTTTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999877533
No 4
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.73 E-value=9e-18 Score=155.58 Aligned_cols=90 Identities=27% Similarity=0.513 Sum_probs=83.3
Q ss_pred CcccccHHHHHHHHHHHHh----cC-CCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAAL----GL-PEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRY 75 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~----g~-p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i 75 (132)
|+++.|++++++++++.++ |. |.||+|+|+||+|+++|.+|+++|++||+|+|+|+||||++++++++++++.++
T Consensus 814 y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~palaL~~e~~~~~~m~~~Pr~~~~~l~~~~~~~~~ 893 (1053)
T TIGR01523 814 HLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKAAPDLMDRLPHDNEVGIFQKELIIDM 893 (1053)
T ss_pred HHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHHHHhhccCCCChhHHhcCCCCCCccccCHHHHHHH
Confidence 6789999999999999998 44 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1020 76 LAIGGYVGAATADEG 90 (132)
Q Consensus 76 ~~~G~i~a~~~~~~~ 90 (132)
+..|+++++.++...
T Consensus 894 ~~~g~~~~~~~l~~~ 908 (1053)
T TIGR01523 894 FAYGFFLGGSCLASF 908 (1053)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888876543
No 5
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.69 E-value=6.7e-17 Score=147.32 Aligned_cols=88 Identities=31% Similarity=0.583 Sum_probs=82.9
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|.++.|++++..++++.+++.|.|++|+|+||+|+++|.+|+++|++||+++++|+||||++++++++++++.+++.+|+
T Consensus 686 ~~l~~ni~~~~~~~~~~~~~~~~pl~~~qiL~inl~~d~~~a~~l~~e~~~~~~m~~~P~~~~~~~~~~~~~~~~~~~g~ 765 (884)
T TIGR01522 686 FQLSTSVAALSLIALATLMGFPNPLNAMQILWINILMDGPPAQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKILVSAI 765 (884)
T ss_pred HHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhhHHHHhccCCCChhHhhCCCCCCCCCccCHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1020 81 YVGAATAD 88 (132)
Q Consensus 81 i~a~~~~~ 88 (132)
++++.++.
T Consensus 766 ~~~~~~~~ 773 (884)
T TIGR01522 766 IIVVGTLF 773 (884)
T ss_pred HHHHHHHH
Confidence 88776554
No 6
>KOG0204|consensus
Probab=99.65 E-value=1.1e-16 Score=144.39 Aligned_cols=87 Identities=29% Similarity=0.416 Sum_probs=80.8
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|+|+.|+..+++-+++.+..-..||+++|+||+||++|.+.|+||+.|||.+++|+|||..|++|++++.||.+++.|+.
T Consensus 807 FQLTVNVvAliv~fv~A~~~~dsPLtAVQlLWVNLIMDTLgALALATepPt~~Lm~RkP~GR~~~LIt~tMwknil~qa~ 886 (1034)
T KOG0204|consen 807 FQLTVNVVALIVNFVSACATGDSPLTAVQLLWVNLIMDTLGALALATEPPTDELMKRKPVGRTKPLITRTMWKNILGQAV 886 (1034)
T ss_pred eEEEEEEEeehhhhhhhhhcCCccHHHHHHHHHHHHHHHHHHHHhccCCCChHHhcCCCCCCCCcchHHHHHHHHHHHHH
Confidence 78999999999999999987789999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHH
Q psy1020 81 YVGAATA 87 (132)
Q Consensus 81 i~a~~~~ 87 (132)
..-+..+
T Consensus 887 YQl~vl~ 893 (1034)
T KOG0204|consen 887 YQLIVLF 893 (1034)
T ss_pred HHHHHHH
Confidence 6655433
No 7
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.64 E-value=6.9e-16 Score=141.27 Aligned_cols=88 Identities=82% Similarity=1.344 Sum_probs=83.6
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|+++.|++++++++++.+++.|.|++|.|+||+|+++|.+|+++++.||+++++|+||||++++++++++++.+++.+|.
T Consensus 698 ~~l~~ni~~~~~~~~~~~~~~~~pl~~~qll~inli~d~lp~~~l~~~~~~~~~m~~pP~~~~~~l~~~~~~~~~~~~g~ 777 (917)
T TIGR01116 698 YMISSNIGEVVCIFLTAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRYLVVGV 777 (917)
T ss_pred HHHhccHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhcCCcchhHhcCCCCCCCCCcccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1020 81 YVGAATAD 88 (132)
Q Consensus 81 i~a~~~~~ 88 (132)
+++++++.
T Consensus 778 ~~~~~~~~ 785 (917)
T TIGR01116 778 YVGLATVG 785 (917)
T ss_pred HHHHHHHH
Confidence 99887654
No 8
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.62 E-value=1.4e-15 Score=140.28 Aligned_cols=88 Identities=27% Similarity=0.432 Sum_probs=79.8
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCC-CCCCCcHHHHHH-HHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKA-DEGLISGWLFFR-YLAI 78 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~-~~~l~~~~l~~~-i~~~ 78 (132)
|+++.|++++++++++.+++.|.|++|+|+||+|+++|.+|++++++||+|+++|+||||++ +++++++.++.. ++..
T Consensus 752 ~~l~~ni~~~~~~~~~~~~~~~~pl~~~qlL~inli~d~lp~~al~~e~~~~~~m~~~P~~~~~~~l~~~~~~~~~~~~~ 831 (997)
T TIGR01106 752 YTLTSNIPEITPFLIFIIANIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAYGQI 831 (997)
T ss_pred HHHHhhHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCcCCccccccCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999986 789999988754 6677
Q ss_pred HHHHHHHHHH
Q psy1020 79 GGYVGAATAD 88 (132)
Q Consensus 79 G~i~a~~~~~ 88 (132)
|+++++..+.
T Consensus 832 g~~~~~~~~~ 841 (997)
T TIGR01106 832 GMIQALGGFF 841 (997)
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 9
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.59 E-value=2.6e-15 Score=137.79 Aligned_cols=89 Identities=31% Similarity=0.481 Sum_probs=82.9
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|.++.|+.+++..+++.+++.+.|++|.|+||+|+++|.+|+++++.|||++++|+||||+++++++++.++.+++.+|+
T Consensus 737 ~~l~~n~~~i~~~~~~~~~~~~~pl~~~qil~inl~~d~~~al~l~~e~~~~~lm~~~P~~~~~~li~~~~~~~i~~~~~ 816 (941)
T TIGR01517 737 FQLTVNVVAVILTFVGSCISSTSPLTAVQLLWVNLIMDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILGQAG 816 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhHHHHccCCccHHHHhCCCCCCCCCcCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1020 81 YVGAATADE 89 (132)
Q Consensus 81 i~a~~~~~~ 89 (132)
++++.++..
T Consensus 817 ~~~~~~~~~ 825 (941)
T TIGR01517 817 YQLVVTFIL 825 (941)
T ss_pred HHHHHHHHH
Confidence 888776643
No 10
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.59 E-value=2.2e-15 Score=138.01 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=71.6
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|++++|++++++++++.+++.+.|++|+|+||+|+++|. |+++|++||+|+++| ||||+++++++++.++. +...+.
T Consensus 705 ~~ls~n~~~~~~~~~~~~~~~~~pl~~~qil~~nli~D~-~~lal~~d~~~~~~m-~~P~~~~~~~~~~~~~~-~g~~~~ 781 (903)
T PRK15122 705 MTASSNFGNVFSVLVASAFIPFLPMLAIHLLLQNLMYDI-SQLSLPWDKMDKEFL-RKPRKWDAKNIGRFMLW-IGPTSS 781 (903)
T ss_pred HHHhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HHHhhcCCCCCHhhc-CCCCCCChhhhHHHHHH-HHHHHH
Confidence 578999999999999988876689999999999999995 999999999999999 99999999999996664 444444
Q ss_pred HHHHHHH
Q psy1020 81 YVGAATA 87 (132)
Q Consensus 81 i~a~~~~ 87 (132)
+++++++
T Consensus 782 ~~~~~~~ 788 (903)
T PRK15122 782 IFDITTF 788 (903)
T ss_pred HHHHHHH
Confidence 4444444
No 11
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.51 E-value=7.9e-14 Score=127.99 Aligned_cols=91 Identities=43% Similarity=0.745 Sum_probs=82.4
Q ss_pred CcccccHHHHHHHHHHHHhcCC-CchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHH-HHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLP-EALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFR-YLAI 78 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p-~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~-i~~~ 78 (132)
|+++.|++++++++++.+++.+ .|+++.|+||+|+++|.+|+++++.|+++.+.|++|||++++++++++.+.+ ++..
T Consensus 707 ~~l~~n~~~~~~~~~~~~~~~~~~p~~~~qll~inll~d~~pa~~L~~~~~~~~~m~~~~~~p~~~i~~~~~~~~~i~~~ 786 (917)
T COG0474 707 YLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILII 786 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhhhheeecCCCcccccccCCCCccccccchhHHHHHHHHH
Confidence 5689999999999999999988 8999999999999999999999999999999999999999999999999988 6677
Q ss_pred HHHHHHHHHHHHH
Q psy1020 79 GGYVGAATADEGL 91 (132)
Q Consensus 79 G~i~a~~~~~~~~ 91 (132)
|...++..+.+..
T Consensus 787 ~~~~~i~~~~~~~ 799 (917)
T COG0474 787 GLLSAILFILTFL 799 (917)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777655433
No 12
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.50 E-value=3.9e-14 Score=129.85 Aligned_cols=80 Identities=26% Similarity=0.342 Sum_probs=65.9
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCC-CCCCCCCcHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR-KADEGLISGWLFFRYLAIG 79 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr-~~~~~l~~~~l~~~i~~~G 79 (132)
|++++|++++++++++.++..+.|++|+|+||+|+++| +|++++++||+|+++|+|||| ++++ +...++..|
T Consensus 705 ~~ls~n~~~v~~~~~~~~~~~~~pl~~~qiL~inl~~D-~~~~al~~d~~~~~~m~~p~r~~~~~------~~~~~~~~g 777 (902)
T PRK10517 705 MTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYD-VSQVAIPFDNVDDEQIQKPQRWNPAD------LGRFMVFFG 777 (902)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HhHHhhcCCCCChhhhcCCCCCCHHH------HHHHHHHHH
Confidence 57899999999999998885448999999999999999 789999999999999999999 3322 445566777
Q ss_pred HHHHHHHH
Q psy1020 80 GYVGAATA 87 (132)
Q Consensus 80 ~i~a~~~~ 87 (132)
.+.++.++
T Consensus 778 ~~~~~~~~ 785 (902)
T PRK10517 778 PISSIFDI 785 (902)
T ss_pred HHHHHHHH
Confidence 76655444
No 13
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.48 E-value=1.1e-13 Score=126.29 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=66.5
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|++++|+++++.++++.++..+.||+|+|+||+|+++| +|+++|++||+++++|++||| ++++ .+...++..|.
T Consensus 670 ~~ls~n~~~~~~~~~~~~~~~~~pl~~~qil~inl~~d-~~~~al~~~~~~~~~m~~p~~-~~~~----~~~~~~~~~g~ 743 (867)
T TIGR01524 670 MTASSNFGNVFSVLVASAFIPFLPMLSLHLLIQNLLYD-FSQLTLPWDKMDREFLKKPHQ-WEQK----GMGRFMLCIGP 743 (867)
T ss_pred HHHhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHhhcCCCCChHhhCCCCC-CChh----hHHHHHHHHHH
Confidence 57899999999999999887669999999999999999 799999999999999987666 6664 34445666666
Q ss_pred HHHHHHH
Q psy1020 81 YVGAATA 87 (132)
Q Consensus 81 i~a~~~~ 87 (132)
..++.++
T Consensus 744 ~~~~~~~ 750 (867)
T TIGR01524 744 VSSIFDI 750 (867)
T ss_pred HHHHHHH
Confidence 5554443
No 14
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=98.93 E-value=2.6e-09 Score=99.49 Aligned_cols=81 Identities=15% Similarity=0.009 Sum_probs=66.9
Q ss_pred ccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHHHH
Q psy1020 3 ISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYV 82 (132)
Q Consensus 3 Ls~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~i~ 82 (132)
+..|+.+...+++... .+.|+++.|+||+|+++|.+++++++.|||++++|++||+ ++++++.++.+++.++++.
T Consensus 869 ~~~~~~~~~~~~~l~~--~~~~l~~~Q~l~i~li~~~~~~l~l~~~~p~~~l~~~~P~---~~l~~~~~~~si~~q~~i~ 943 (1054)
T TIGR01657 869 ALYSLIQFYSVSILYL--IGSNLGDGQFLTIDLLLIFPVALLMSRNKPLKKLSKERPP---SNLFSVYILTSVLIQFVLH 943 (1054)
T ss_pred HHHHHHHHHHHHHHHH--ccCcCccHHHHHHHHHHHHHHHHHHHcCCchhhcCCCCCC---ccccCHHHHHHHHHHHHHH
Confidence 3445555555444333 4578999999999999999999999999999999999985 5899999999999999988
Q ss_pred HHHHHH
Q psy1020 83 GAATAD 88 (132)
Q Consensus 83 a~~~~~ 88 (132)
.+..+.
T Consensus 944 ~~~~~~ 949 (1054)
T TIGR01657 944 ILSQVY 949 (1054)
T ss_pred HHHHHH
Confidence 877554
No 15
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.84 E-value=1.3e-08 Score=92.06 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=61.7
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|.+++|+++++.++++.++ .+.||+|+|+||+|+++|. +++++++|++++. |+|++ ..+ ++++.+.+..|.
T Consensus 602 ~~~~~n~~~~~~~~~~~l~-~~~~l~~~~il~~~l~~d~-~~~~l~~~~~~~~---~~p~~---~~~-~~~~~~~~~~g~ 672 (755)
T TIGR01647 602 YRIAETIRIVFFFGLLILI-LNFYFPPIMVVIIAILNDG-TIMTIAYDNVKPS---KLPQR---WNL-REVFTMSTVLGI 672 (755)
T ss_pred HHhcccHHHHHHHHHHHHH-hCcchhHHHHHHHHHHHhH-hHhhccCCCCCCC---CCCCc---cch-HHHHHHHHHHHH
Confidence 5689999999988887763 3456999999999999995 6999999998853 33443 334 467777888998
Q ss_pred HHHHHHHHH
Q psy1020 81 YVGAATADE 89 (132)
Q Consensus 81 i~a~~~~~~ 89 (132)
++++.++..
T Consensus 673 ~~~~~~~~~ 681 (755)
T TIGR01647 673 YLVISTFLL 681 (755)
T ss_pred HHHHHHHHH
Confidence 888865543
No 16
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=98.30 E-value=1.2e-06 Score=81.88 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=72.0
Q ss_pred CcccccHHHHHHHHHHHHhc-C-C-CchHHHHHHHHHHhhhhhhhhhccc--CCCCccCccCCCC----CCCCCCCcHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALG-L-P-EALIPVQLLWVNLVTDGLPATALGF--NPPDLDIMDKPPR----KADEGLISGWL 71 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g-~-p-~pL~piQILwiNLv~d~~palaL~~--ep~e~~iM~rpPr----~~~~~l~~~~l 71 (132)
|.+..|+..+++.++..++. . + .++.+.|++|.|+++|.+|++++|. +++++++|+|+|+ .++++.++++.
T Consensus 836 ~~~~kn~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~n~~~t~lp~~~l~~~d~~~~~~~l~~~P~ly~~~~~~~~~~~~~ 915 (1057)
T TIGR01652 836 YFFYKNLIFAIIQFWYSFYNGFSGQTLYEGWYMVLYNVFFTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKT 915 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHhChHHHHHhhhcCCCCHHH
Confidence 45677888888777766653 2 1 3689999999999999999999986 5778899999999 56788999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1020 72 FFRYLAIGGYVGAATADE 89 (132)
Q Consensus 72 ~~~i~~~G~i~a~~~~~~ 89 (132)
+.+++..|++.++..++-
T Consensus 916 f~~~~~~~~~~~~ii~~~ 933 (1057)
T TIGR01652 916 FWGWMLDGIYQSLVIFFF 933 (1057)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888776543
No 17
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=2e+02 Score=24.08 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHH----HHHhhhhhhhhhcccCCCCccCccCC
Q psy1020 10 VVSIFLTAALGLPEALIPVQLLW----VNLVTDGLPATALGFNPPDLDIMDKP 58 (132)
Q Consensus 10 il~~l~~~l~g~p~pL~piQILw----iNLv~d~~palaL~~ep~e~~iM~rp 58 (132)
+++.+.+.+++..-..++..+++ .-+...+.+++-.-.|+.-|.+|+|-
T Consensus 34 ~it~~~g~~lA~~~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT 86 (304)
T COG0109 34 LITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERT 86 (304)
T ss_pred HHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhc
Confidence 34555555555433444544444 47777888888899999999999883
No 18
>PF11804 DUF3325: Protein of unknown function (DUF3325); InterPro: IPR021762 This family of short proteins are functionally uncharacterised. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.
Probab=42.03 E-value=41 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=23.7
Q ss_pred hhhhhhhhhcccCCCCccCccCCCCCCCC
Q psy1020 36 VTDGLPATALGFNPPDLDIMDKPPRKADE 64 (132)
Q Consensus 36 v~d~~palaL~~ep~e~~iM~rpPr~~~~ 64 (132)
-.-.+.++++++|+..+|+.+|+|.+++.
T Consensus 8 ~~~gf~~LALam~rH~~~v~~~~~~~~~~ 36 (106)
T PF11804_consen 8 CYAGFAALALAMDRHHRQVFGRPLSPARR 36 (106)
T ss_pred HHHHHHHHHhcCcHHHHHHcCCCCCHHHH
Confidence 34467899999999999999998877543
No 19
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=36.75 E-value=57 Score=26.06 Aligned_cols=30 Identities=13% Similarity=-0.097 Sum_probs=16.8
Q ss_pred ccCCCCccCccCCCCCC-CCCCCcHHHHHHH
Q psy1020 46 GFNPPDLDIMDKPPRKA-DEGLISGWLFFRY 75 (132)
Q Consensus 46 ~~ep~e~~iM~rpPr~~-~~~l~~~~l~~~i 75 (132)
-.|...|..|+|+|.++ .++.++++.....
T Consensus 58 ~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~ 88 (282)
T TIGR01475 58 IIDRAIDARNPRTKNRPLVSGLISKKEARTM 88 (282)
T ss_pred HHHHcccCCCCccCCCCCCCCCcCHHHHHHH
Confidence 34566666677666544 4445666655433
No 20
>PRK09459 pspG phage shock protein G; Reviewed
Probab=33.28 E-value=1.5e+02 Score=19.91 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hhhhheeeeecCCCCccccc
Q psy1020 77 AIGGYVGAATADEGLISGWLFFRYLAIGGYVGAAT-------VGAAAWWFLYSPYGPQMTYW 131 (132)
Q Consensus 77 ~~G~i~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 131 (132)
...+..+-.+++..+-+....+..|..|+..+..- +.+...|+++.-..|+..-+
T Consensus 11 ~~~LlvTGiSllgv~aAl~va~~vM~l~Gm~~lviKLLPWLil~~v~vW~~r~~~~~~~~~y 72 (76)
T PRK09459 11 FVMLLVTGISLLGIIAALGVATLVMFLGGMFALMIKLLPWLLLAVVVVWVIRAIKAPKVPRY 72 (76)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 44555666677777777778888888888888543 67778888887666654433
No 21
>PLN02776 prenyltransferase
Probab=28.98 E-value=1.5e+02 Score=25.12 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=19.7
Q ss_pred HhhhhhhhhhcccCCCCccCccCCCCCC-CCCCCcHHHH
Q psy1020 35 LVTDGLPATALGFNPPDLDIMDKPPRKA-DEGLISGWLF 72 (132)
Q Consensus 35 Lv~d~~palaL~~ep~e~~iM~rpPr~~-~~~l~~~~l~ 72 (132)
+.....+++-=-.|..-|..|+|.++++ ..+-++++..
T Consensus 40 l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A 78 (341)
T PLN02776 40 LCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHA 78 (341)
T ss_pred HHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHH
Confidence 3344444555556777777777743332 3333454443
No 22
>PHA00726 hypothetical protein
Probab=25.90 E-value=96 Score=21.37 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=9.8
Q ss_pred CCCCCCCC-CCCcHHHHHHHHHHH
Q psy1020 57 KPPRKADE-GLISGWLFFRYLAIG 79 (132)
Q Consensus 57 rpPr~~~~-~l~~~~l~~~i~~~G 79 (132)
|||+++++ .-.|.+.+.-+++.+
T Consensus 27 RKpK~k~~~~~~~~r~iGyYlVis 50 (89)
T PHA00726 27 RKPKPKKVKSTLNHRSIGYYLVIS 50 (89)
T ss_pred cCCCCchhhcCCCCcceeeeeHHH
Confidence 44443322 445555553333333
No 23
>KOG0208|consensus
Probab=25.88 E-value=90 Score=30.50 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=48.9
Q ss_pred CCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q psy1020 22 PEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATAD 88 (132)
Q Consensus 22 p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~i~a~~~~~ 88 (132)
..-++=.|.|.++++.-.+-|+.++.-+|...+-+.|| +.++++++.....+.+-.++.+..++
T Consensus 937 ~~nl~D~Qfl~iDLlii~pia~~m~~~~a~~~L~~~rP---~~~L~s~~~~~~l~~q~vli~l~q~i 1000 (1140)
T KOG0208|consen 937 NSNLGDLQFLFIDLLIITPIAVMMSRFDASDKLFPKRP---PTNLLSKKILVPLLLQIVLICLVQWI 1000 (1140)
T ss_pred cccccchhhhhhHHHHHHHHHHHHccCcHHHHhcCCCC---CccccccchhhhhHHHHHHHHHHHHh
Confidence 34678889999999999999999999888888776655 34688888877777666655554443
No 24
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=25.12 E-value=31 Score=18.65 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=10.7
Q ss_pred CCCCccCccCCCCCCC
Q psy1020 48 NPPDLDIMDKPPRKAD 63 (132)
Q Consensus 48 ep~e~~iM~rpPr~~~ 63 (132)
.|+..|++.++|.+.+
T Consensus 8 spapsdils~~pqs~r 23 (29)
T PF05570_consen 8 SPAPSDILSSKPQSKR 23 (29)
T ss_pred CCCcHHHHhcCccccC
Confidence 4566777777777654
Done!