Query psy1020
Match_columns 132
No_of_seqs 139 out of 1325
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 20:23:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 99.8 5.6E-20 1.9E-24 167.9 9.0 125 1-132 788-920 (1034)
2 3ar4_A Sarcoplasmic/endoplasmi 99.7 2.6E-17 8.9E-22 149.7 7.5 87 1-87 764-850 (995)
3 2zxe_A Na, K-ATPase alpha subu 99.6 2.1E-15 7.1E-20 137.9 8.3 88 1-88 783-872 (1028)
4 1mhs_A Proton pump, plasma mem 98.5 4.9E-08 1.7E-12 88.9 3.1 78 1-88 694-772 (920)
5 3b8c_A ATPase 2, plasma membra 98.1 2.4E-07 8.4E-12 83.9 -1.4 79 1-88 648-726 (885)
6 2voy_D Sarcoplasmic/endoplasmi 97.4 4.6E-05 1.6E-09 40.6 1.4 26 95-120 1-26 (26)
7 3ukw_C Bimax1 peptide; arm rep 18.4 68 0.0023 16.3 1.7 15 49-63 11-25 (28)
8 3omd_A Uncharacterized protein 10.0 1.3E+02 0.0045 21.3 1.8 16 51-66 5-20 (145)
9 2i68_A Protein EMRE; transmemb 6.9 3E+02 0.01 18.8 2.6 39 7-46 66-104 (137)
10 4g6x_A Glyoxalase/bleomycin re 5.8 1.5E+02 0.0051 19.5 0.4 14 119-132 137-150 (155)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.80 E-value=5.6e-20 Score=167.92 Aligned_cols=125 Identities=26% Similarity=0.417 Sum_probs=95.4
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCC-CCCCCcHHHHHHH-HHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKA-DEGLISGWLFFRY-LAI 78 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~-~~~l~~~~l~~~i-~~~ 78 (132)
|+++.|++++++++++.+++.|.|++|+|+||+|+++|.+|+++|++||+|+++|+||||++ ++++++++++.++ +..
T Consensus 788 ~~l~~ni~~~~~~~~~~~~~~~~pl~~~qiL~inl~~d~~palal~~e~~~~~~m~~~Pr~~~~~~l~~~~~~~~~~~~~ 867 (1034)
T 3ixz_A 788 YTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQI 867 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhCCCCCCccccccCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998 7899999998764 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhheeee------ecCCCCcccccC
Q psy1020 79 GGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL------YSPYGPQMTYWQ 132 (132)
Q Consensus 79 G~i~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 132 (132)
|+++++.++. +++.++..+++.+....+....|.. ...+|++|||.|
T Consensus 868 g~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1034)
T 3ixz_A 868 GAIQSFAGFT-------DYFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQ 920 (1034)
T ss_pred HHHHHHHHHH-------HHHHHHhhcCCccccccccccccccccccccccccccccchhh
Confidence 8877766543 3344444433333222222222322 235677787764
No 2
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.69 E-value=2.6e-17 Score=149.68 Aligned_cols=87 Identities=90% Similarity=1.467 Sum_probs=80.7
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|.++.|++++++++++.++|.|.|++|+|+||+|+++|.+|++++++||+++++|+||||++++++++++++.+++.+|+
T Consensus 764 ~~l~~Ni~~~~~~~~~~~~g~~~pl~~~qil~~nl~~d~~p~l~l~~~~~~~~~m~~~P~~~~~~l~~~~~~~~~~~~g~ 843 (995)
T 3ar4_A 764 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGG 843 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTTTHHHHHHHTTCCCCTTGGGSCCCCTTCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhCCCCCCcccccCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHH
Q psy1020 81 YVGAATA 87 (132)
Q Consensus 81 i~a~~~~ 87 (132)
++++.++
T Consensus 844 ~~~~~~~ 850 (995)
T 3ar4_A 844 YVGAATV 850 (995)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776643
No 3
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.58 E-value=2.1e-15 Score=137.88 Aligned_cols=88 Identities=28% Similarity=0.406 Sum_probs=79.6
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCC-CCCcHHHHHH-HHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADE-GLISGWLFFR-YLAI 78 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~-~l~~~~l~~~-i~~~ 78 (132)
|.++.|+++++.++++.+++.|.|++|+|+||+|+++|.+|++++++||+++++|+||||++++ ++++++++.+ ++..
T Consensus 783 ~~l~~n~~~~~~~~~~~~~~~~~~l~~~qil~inl~~d~~pa~al~~e~~~~~~m~~~Pr~~~~~~l~~~~~~~~~~~~~ 862 (1028)
T 2zxe_A 783 YTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQI 862 (1028)
T ss_dssp HHHHTTHHHHHHHHHHHHHCCCCSSCHHHHHHHHTTTTHHHHHHGGGCCCSSCGGGSCCCCTTTCCSSCHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhccCccchhhhccCCCCcccccccCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999866 9999998876 5677
Q ss_pred HHHHHHHHHH
Q psy1020 79 GGYVGAATAD 88 (132)
Q Consensus 79 G~i~a~~~~~ 88 (132)
|+++++.++.
T Consensus 863 g~~~~~~~~~ 872 (1028)
T 2zxe_A 863 GMIQALGGFF 872 (1028)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776554
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=98.48 E-value=4.9e-08 Score=88.92 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=55.2
Q ss_pred CcccccHHHHHHH-HHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSI-FLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIG 79 (132)
Q Consensus 1 ylLs~nv~eil~~-l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G 79 (132)
|+++.|+++...+ +...++|. |++|.|++|+|+++|. |++++++|+++++ ||||+++. ++++.+++..|
T Consensus 694 ~~l~~n~~~~~~~~~~~~~~~~--~l~~~~il~~~l~~d~-~~lal~~e~~~~~---~~P~~~~~----~~~~~~~~~~g 763 (920)
T 1mhs_A 694 YRIALSIHLEIFLGLWIAILNR--SLNIELVVFIAIFADV-ATLAIAYDNAPYS---QTPVKWNL----PKLWGMSVLLG 763 (920)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSC--CCCHHHHHHHHHHHTT-HHHHCCCCCSGGG---GSCCCCCS----SSCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHH-HhhhhcccCcccc---cCCCCchH----HHHHHHHHHHH
Confidence 4567787764332 33344444 5899999999999996 9999999999876 77888765 33444556677
Q ss_pred HHHHHHHHH
Q psy1020 80 GYVGAATAD 88 (132)
Q Consensus 80 ~i~a~~~~~ 88 (132)
.++++.++.
T Consensus 764 ~~~~~~~~~ 772 (920)
T 1mhs_A 764 VVLAVGTWI 772 (920)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=98.10 E-value=2.4e-07 Score=83.93 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=54.9
Q ss_pred CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG 80 (132)
Q Consensus 1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~ 80 (132)
|.++.|+++++.++.+.+ +++.|++|+|++|+|+++|..+ +++++|+.++ ||+++...+ ++++.+.+..|.
T Consensus 648 ~~l~~n~~~~~~~~~~~~-~~~~~l~p~~il~i~l~~d~~~-l~l~~~~~~~------~~~p~~~~~-~~~~~~~~~~g~ 718 (885)
T 3b8c_A 648 YAVSITIRIVFGFMLIAL-IWEFDFSAFMVLIIAILNDGTI-MTISKDRVKP------SPTPDSWKL-KEIFATGVVLGG 718 (885)
T ss_dssp HHHHHTTTTTSTTHHHHS-SCSSCSCHHHHHHHHHHHHTTT-CCCCCCCCCC------SSCCCSTTT-TTTTTTHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH-ccCcCcCHHHHHHHHHHHHHHH-HhhcccccCc------ccCCcchhH-HHHHHHHHHHHH
Confidence 456777776655555444 6788999999999999999876 9999988765 233333333 445555667777
Q ss_pred HHHHHHHH
Q psy1020 81 YVGAATAD 88 (132)
Q Consensus 81 i~a~~~~~ 88 (132)
++++.++.
T Consensus 719 ~~~~~~~~ 726 (885)
T 3b8c_A 719 YQAIMTVI 726 (885)
T ss_dssp STHHHHTT
T ss_pred HHHHHHHH
Confidence 77776554
No 6
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=97.42 E-value=4.6e-05 Score=40.59 Aligned_cols=26 Identities=85% Similarity=1.552 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhheeee
Q psy1020 95 WLFFRYLAIGGYVGAATVGAAAWWFL 120 (132)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~~~~~~ 120 (132)
|.++||+..|.|+|.+|+++|.+|+.
T Consensus 1 wl~~Ry~viG~yvg~aTvg~f~~wy~ 26 (26)
T 2voy_D 1 WLFFRYMAIGGYVGAATVGAAAWXXX 26 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchHHHHHHHHHHHHHhhheeEEecC
Confidence 45789999999999999999999863
No 7
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=18.36 E-value=68 Score=16.35 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=9.2
Q ss_pred CCCccCccCCCCCCC
Q psy1020 49 PPDLDIMDKPPRKAD 63 (132)
Q Consensus 49 p~e~~iM~rpPr~~~ 63 (132)
|-|-|.-+.|||+++
T Consensus 11 plewdedeepprkrk 25 (28)
T 3ukw_C 11 PLEWDEDEEPPRKRK 25 (28)
T ss_dssp CCCCCGGGSCCSSCC
T ss_pred CcccccccCcchhhh
Confidence 334455567888765
No 8
>3omd_A Uncharacterized protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: MSE; 1.50A {Leptospirillum rubarum}
Probab=10.01 E-value=1.3e+02 Score=21.34 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=12.6
Q ss_pred CccCccCCCCCCCCCC
Q psy1020 51 DLDIMDKPPRKADEGL 66 (132)
Q Consensus 51 e~~iM~rpPr~~~~~l 66 (132)
..|+-+++||++.+.+
T Consensus 5 ~~dlt~~~pRSp~~~l 20 (145)
T 3omd_A 5 GMDLTKQFPRSPVDRL 20 (145)
T ss_dssp CCCTTTSCCCCTTSCB
T ss_pred ccchhcCCCCCHHHHh
Confidence 5678889999987764
No 9
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=6.92 E-value=3e+02 Score=18.79 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcc
Q psy1020 7 IGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALG 46 (132)
Q Consensus 7 v~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~ 46 (132)
++-+.+.+++.++ ...++++.|++-+-++.-+.-.+...
T Consensus 66 l~pv~~~l~g~l~-lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 66 VGIVLISLLSWGF-FGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHH-HC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444444555443 34688999999998888877766653
No 10
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=5.83 E-value=1.5e+02 Score=19.46 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=10.9
Q ss_pred eeecCCCCcccccC
Q psy1020 119 FLYSPYGPQMTYWQ 132 (132)
Q Consensus 119 ~~~~~~~~~~~~~~ 132 (132)
+..+|+|+.+...|
T Consensus 137 ~f~DPdGn~iel~q 150 (155)
T 4g6x_A 137 ILDDTCGNLIQLMQ 150 (155)
T ss_dssp EEECSSSCEEEEEE
T ss_pred EEECCCCCEEEEEE
Confidence 45799999887665
Done!