RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1020
(132 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 176 bits (448), Expect = 2e-52
Identities = 92/132 (69%), Positives = 98/132 (74%), Gaps = 25/132 (18%)
Query: 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct: 764 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 823
Query: 61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
E LISGWLFFRY+AIGGYVGAATVGAAAWWF+
Sbjct: 824 S-------------------------PKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFM 858
Query: 121 YSPYGPQMTYWQ 132
Y+ GP +TY Q
Sbjct: 859 YAEDGPGVTYHQ 870
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 123 bits (312), Expect = 3e-34
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
Y ++ NI E+ + + +P L + +L++ L TD P+ +L + + DIM PR
Sbjct: 788 YTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPR 847
Query: 61 KADEGLI--SGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWW 118
+ + Y IG A +F +A G+ VG W
Sbjct: 848 NPKRDRLVNEPLAAYSYFQIGAIQSFAGF-------TDYFTAMAQEGWFPLLCVGLRPQW 900
Query: 119 F------LYSPYGPQMTYWQ 132
L YG + T+ Q
Sbjct: 901 ENHHLQDLQDSYGQEWTFGQ 920
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 116 bits (293), Expect = 2e-31
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 15/140 (10%)
Query: 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
Y ++SNI E+ + +P L V +L ++L TD +PA +L + + DIM + PR
Sbjct: 783 YTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPR 842
Query: 61 KADEGLISGWLFFR--YLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWW 118
+ Y IG + +F LA G++ +G W
Sbjct: 843 NPKTDKLVNERLISMAYGQIGMIQALGGF-------FSYFVILAENGFLPMDLIGKRVRW 895
Query: 119 F------LYSPYGPQMTYWQ 132
+ +G Q TY Q
Sbjct: 896 DDRWISDVEDSFGQQWTYEQ 915
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 68.9 bits (169), Expect = 6e-15
Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 13/119 (10%)
Query: 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
Y +S I V L AL +L + ++ DG + + P
Sbjct: 648 YAVSITIRIVFGFML-IALIWEFDFSAFMVLIIAILNDG-TIMTISKDRVK---PSPTPD 702
Query: 61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWF 119
I F + +GGY T +I W + G ++
Sbjct: 703 SWKLKEI----FATGVVLGGYQAIMT----VIFFWAAHKTDFFSDTFGVRSIRDNNHEL 753
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 65.0 bits (159), Expect = 2e-13
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
Y I+ +I + + L L +L ++++ + D + A+ ++
Sbjct: 694 YRIALSIHLEIFLGL-WIAILNRSLNIELVVFIAIFAD-VATLAIAYDNAPYSQTPVKWN 751
Query: 61 KADEGLISGWLFFRYLAIGGYVGAATA 87
+S L LA+G ++ T
Sbjct: 752 LPKLWGMSVLLGV-VLAVGTWITVTTM 777
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;
hydrolasep-type ATPase, cryo-EM, helical reconstruction,
membrane protein; 17.50A {Oryctolagus cuniculus}
Length = 26
Score = 41.9 bits (98), Expect = 7e-07
Identities = 22/23 (95%), Positives = 23/23 (100%)
Query: 95 WLFFRYLAIGGYVGAATVGAAAW 117
WLFFRY+AIGGYVGAATVGAAAW
Sbjct: 1 WLFFRYMAIGGYVGAATVGAAAW 23
Score = 32.6 bits (74), Expect = 0.002
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 70 WLFFRYLAIGGYVGAAT 86
WLFFRY+AIGGYVGAAT
Sbjct: 1 WLFFRYMAIGGYVGAAT 17
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.002
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 1 YLISSNIGEVVSIFLTAALGLPEALIPVQLL--WVNLVTDGLPATALGFNPPDLDIM--- 55
+L ++ + + L E LL +++ LP L NP L I+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 56 --DKPPRKADEGLISGWLFFRYL 76
D W ++++
Sbjct: 337 IRDGLAT---------WDNWKHV 350
>4dn2_A Nitroreductase; structural genomics, protein structure initiative,
NEW YORK structural genomix research consortium, nysgrc;
HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Length = 208
Score = 26.9 bits (60), Expect = 2.1
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 14/55 (25%)
Query: 14 FLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLIS 68
L LG+P L V L LG+ P P RK + ++
Sbjct: 162 QLGELLGIPAELRIVGLF------------PLGY--PLEGPKAGPSRKPLDEIVH 202
>2h6f_B Protein farnesyltransferase beta subunit; ftase,
farnesyltransferase, farnesyl transferase,
prenyltransferase, CAAX, RAS, lipid modification,
prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP:
a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B*
1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B*
2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B*
1d8e_B* ...
Length = 437
Score = 26.7 bits (58), Expect = 2.5
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 52 LDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAAT 111
L+++D+P + + +L GG+ G L + L I G A
Sbjct: 111 LELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYD 170
Query: 112 VG--AAAWWFLYSPYGPQMTYW 131
+ +LYS P ++
Sbjct: 171 IINREKLLQYLYSLKQPDGSFL 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.144 0.474
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,231,601
Number of extensions: 133903
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 18
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)