RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1020
         (132 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 96.3 bits (239), Expect = 5e-25
 Identities = 92/132 (69%), Positives = 98/132 (74%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct: 241 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 300

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
                                       E LISGWLFFRY+AIGGYVGAATVGAAAWWF+
Sbjct: 301 S-------------------------PKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFM 335

Query: 121 YSPYGPQMTYWQ 132
           Y+  GP +TY Q
Sbjct: 336 YAEDGPGVTYHQ 347


>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
           beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 401

 Score = 28.5 bits (63), Expect = 0.27
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 52  LDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAAT 111
           L+++D+P  +     +  +L       GG+ G       L   +     L I G   A  
Sbjct: 91  LELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYD 150

Query: 112 V--GAAAWWFLYSPYGPQMTYW 131
           +        +LYS   P  ++ 
Sbjct: 151 IINREKLLQYLYSLKQPDGSFL 172


>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas
           denitrificans [TaxId: 43306]}
          Length = 209

 Score = 24.0 bits (52), Expect = 6.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 80  GYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAA 116
           G+VGAA + + L        +  + G +G + + AAA
Sbjct: 164 GFVGAAESKDALAENSYGVPFAIVRGRLGGSAMTAAA 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.144    0.474 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 535,234
Number of extensions: 24146
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 11
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)