BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10208
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 78.6 bits (192), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y++ TR I++ ++ +R++ L I G P VIA+ SD +IY++ + RGW N
Sbjct: 375 YLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDELNIYQVMEEMAGRGWRLN 433
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIP 120
L P H+ +T HT+PGV D+F++D+++ +A + +P + G+ +YG + + P
Sbjct: 434 GLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPE-KATGMAPVYGMAAAAP 490
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 78.6 bits (192), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y++ TR I++ ++ +R++ L I G P VIA+ SD +IY++ + RGW N
Sbjct: 375 YLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDELNIYQVMEEMAGRGWRLN 433
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIP 120
L P H+ +T HT+PGV D+F++D+++ +A + +P + G+ +YG + + P
Sbjct: 434 GLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPE-KATGMAPVYGMAAAAP 490
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y++ TR I++ ++ +R++ L I G P VIA+ SD +IY++ + RGW N
Sbjct: 379 YLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDELNIYQVMEEMAGRGWRLN 437
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIP 120
L P H+ +T HT+PGV D+F++D+++ +A + +P + G+ +YG + + P
Sbjct: 438 GLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPE-KATGMAPVYGMAAAAP 494
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y++ TR I++ ++ +R++ L I G P VIA+ SD +IY++ + RGW N
Sbjct: 375 YLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDELNIYQVMEEMAGRGWRLN 433
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIP 120
L P H+ +T HT+PGV D+F++D+++ +A + +P + G+ +YG + + P
Sbjct: 434 GLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPE-KATGMAPVYGMAAAAP 490
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y++ TR I++ ++ +R++ L I G P VIA+ SD +IY++ + RGW N
Sbjct: 379 YLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDELNIYQVMEEMAGRGWRLN 437
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIP 120
L P H+ +T HT+PGV D+F++D+++ +A + +P + G+ +YG + + P
Sbjct: 438 GLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPE-KATGMAPVYGMAAAAP 494
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 3 YVNTTRSIIETV----KYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRG 58
Y+ + + I+ KYI++ + +D I G P SVI+ S +I+ LS L+K+G
Sbjct: 343 YIESCQEIVGAAMKFKKYIQENIPDLD---IMGNPRYSVISFSSKTLNIHELSDRLSKKG 399
Query: 59 WNTNSLQFPVGIHICITHM--HTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKS 116
W+ N+LQ PV +H+ T + H + D + V+E + P +G A+YG +
Sbjct: 400 WHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELKSESNSKP--SPDGTSALYGVA 457
Query: 117 HSIPDRSIIGDFTRYYIDATY 137
S+ + ++DA Y
Sbjct: 458 GSVKTAGVADKLIVGFLDALY 478
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 3 YVNTTRSIIETV----KYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRG 58
Y+ + + I+ KYI++ + +D I G P SVI+ S +I+ LS L+K+G
Sbjct: 343 YIESCQEIVGAAMKFKKYIQENIPDLD---IMGNPRYSVISFSSKTLNIHELSDRLSKKG 399
Query: 59 WNTNSLQFPVGIHICITHM--HTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKS 116
W+ N+LQ PV +H+ T + H + D + V+E + P +G A+YG +
Sbjct: 400 WHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELKSESNSKP--SPDGTSALYGVA 457
Query: 117 HSIPDRSIIGDFTRYYIDATY 137
S+ + ++DA Y
Sbjct: 458 GSVKTAGVADKLIVGFLDALY 478
>pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|B Chain B, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|C Chain C, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|D Chain D, Structure Of Human Rev1-Dna-Dntp Ternary Complex
Length = 504
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 47 IYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQ 105
+YR GL+ R T + V I TQP A+ F+ + EE+ ++ G++
Sbjct: 362 LYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGMK 420
>pdb|3SG1|A Chain A, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|B Chain B, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|C Chain C, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|D Chain D, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
Length = 458
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 104 LQLEGVMAMYGKSHS-IPDRSIIGDF 128
+++EGV +YG +HS IPDR G F
Sbjct: 239 IRIEGVDKLYGANHSIIPDRIEAGTF 264
>pdb|1B6T|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
pdb|1B6T|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1GN8|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1H1T|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
Coenzyme A From Escherichia Coli
pdb|1H1T|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
Coenzyme A From Escherichia Coli
Length = 159
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 86 KFISDVREELAIIMQNPGL--QLEGVMAMYGKSHSIPDRSIIGDFTRYYIDATYYTPDS 142
+ ++D E+ + N L +LE V M K S S++ + R+ D T++ P++
Sbjct: 91 RAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPEN 149
>pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
pdb|1QJC|B Chain B, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
Length = 158
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 86 KFISDVREELAIIMQNPGL--QLEGVMAMYGKSHSIPDRSIIGDFTRYYIDATYYTPDS 142
+ ++D E+ + N L +LE V M K S S++ + R+ D T++ P++
Sbjct: 90 RAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPEN 148
>pdb|1MOJ|A Chain A, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|B Chain B, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|C Chain C, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|D Chain D, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1TJO|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|A Chain A, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|B Chain B, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|C Chain C, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|D Chain D, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
Length = 182
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 20 ELRSMDGLFIFGTPATSVI-ALGSDVFHIYRLSSGLNKRGWNTNSLQF 66
E+ D L + A + AL +D+ ++Y L L K WN +F
Sbjct: 13 EVEGSDALRMDADRAEQCVDALNADLANVYVLYHQLKKHHWNVEGAEF 60
>pdb|2X03|A Chain A, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase Y253 Mutant
pdb|2X03|B Chain B, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase Y253 Mutant
Length = 765
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 33 PA-TSVIALGSDVFHIYRLSSGLNKRGWNTNS 63
PA T+ +A+ SD Y +G N RGW+T +
Sbjct: 412 PAFTAGLAMASDRIAHYECGNGENPRGWHTGA 443
>pdb|2WDA|A Chain A, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase In Complex With Chondroitin
Sulphate
pdb|2WCO|A Chain A, Structures Of The Streptomyces Coelicolor A3(2) Hyaluronan
Lyase In Complex With Oligosaccharide Substrates And An
Inhibitor
Length = 765
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 33 PA-TSVIALGSDVFHIYRLSSGLNKRGWNTNS 63
PA T+ +A+ SD Y +G N RGW+T +
Sbjct: 412 PAFTAGLAMASDRIAHYECGNGENPRGWHTGA 443
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 26.6 bits (57), Expect = 4.7, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 8 RSIIETVKYIEKELRSMDGLFIFGT 32
R I E K E+ +R++ GLFI GT
Sbjct: 642 REIREECKQDEERVRALGGLFIIGT 666
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,401,650
Number of Sequences: 62578
Number of extensions: 167136
Number of successful extensions: 364
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 16
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)