Query psy10208
Match_columns 143
No_of_seqs 119 out of 713
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 20:36:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1383|consensus 100.0 3.3E-36 7.2E-41 253.0 14.9 140 1-141 350-489 (491)
2 TIGR01788 Glu-decarb-GAD gluta 99.6 4E-15 8.6E-20 126.6 12.0 97 1-98 322-430 (431)
3 PLN03032 serine decarboxylase; 99.5 2.2E-13 4.9E-18 114.1 8.9 83 1-94 291-373 (374)
4 PRK02769 histidine decarboxyla 99.4 8.6E-13 1.9E-17 110.7 10.0 84 1-96 288-371 (380)
5 PLN02263 serine decarboxylase 99.4 9.1E-13 2E-17 113.2 9.7 87 1-98 358-444 (470)
6 COG0076 GadB Glutamate decarbo 99.3 7.8E-12 1.7E-16 107.4 7.6 88 1-89 338-427 (460)
7 PLN02590 probable tyrosine dec 98.9 8.9E-09 1.9E-13 90.1 10.1 101 1-101 424-536 (539)
8 cd06450 DOPA_deC_like DOPA dec 98.9 1.1E-08 2.3E-13 82.9 8.7 94 1-94 244-345 (345)
9 PLN02880 tyrosine decarboxylas 98.7 9E-08 1.9E-12 82.9 10.3 100 1-100 376-487 (490)
10 PRK13520 L-tyrosine decarboxyl 98.7 3.6E-07 7.7E-12 74.7 12.3 91 1-95 279-369 (371)
11 TIGR03799 NOD_PanD_pyr putativ 98.6 2E-07 4.4E-12 81.4 9.4 91 1-91 396-519 (522)
12 PRK04366 glycine dehydrogenase 98.6 7.1E-07 1.5E-11 76.9 11.0 101 1-104 345-455 (481)
13 TIGR03812 tyr_de_CO2_Arch tyro 98.6 9E-07 2E-11 72.5 11.0 89 1-93 284-372 (373)
14 PRK10874 cysteine sulfinate de 98.5 2.3E-06 5.1E-11 71.1 12.6 96 2-98 293-399 (401)
15 TIGR03392 FeS_syn_CsdA cystein 98.4 5.8E-06 1.3E-10 68.7 12.7 96 2-98 290-396 (398)
16 TIGR01979 sufS cysteine desulf 98.3 2.1E-05 4.5E-10 65.3 12.3 96 2-98 292-402 (403)
17 PLN02855 Bifunctional selenocy 98.2 2.6E-05 5.6E-10 65.6 12.5 99 2-101 306-422 (424)
18 cd06453 SufS_like Cysteine des 98.1 4.1E-05 9E-10 62.7 10.6 88 2-90 272-372 (373)
19 COG0520 csdA Selenocysteine ly 98.1 6.9E-05 1.5E-09 63.7 12.1 94 2-96 297-404 (405)
20 PRK09295 bifunctional cysteine 98.0 0.00012 2.5E-09 61.2 12.5 94 2-96 298-403 (406)
21 TIGR01976 am_tr_V_VC1184 cyste 97.9 0.00016 3.4E-09 59.9 10.6 87 3-90 292-396 (397)
22 PRK00451 glycine dehydrogenase 97.9 0.0002 4.3E-09 60.6 11.0 93 1-95 348-446 (447)
23 TIGR01977 am_tr_V_EF2568 cyste 97.8 0.00034 7.3E-09 57.3 10.9 91 2-93 267-375 (376)
24 PLN02721 threonine aldolase 97.7 0.00059 1.3E-08 55.2 11.2 89 7-97 260-352 (353)
25 cd06451 AGAT_like Alanine-glyo 97.7 0.00037 8E-09 56.8 10.1 92 2-95 256-355 (356)
26 cd00613 GDC-P Glycine cleavage 97.7 0.00019 4E-09 59.4 8.2 89 1-90 304-397 (398)
27 PRK13034 serine hydroxymethylt 97.6 0.00072 1.6E-08 57.3 10.7 91 4-96 285-391 (416)
28 TIGR03403 nifS_epsilon cystein 97.6 0.00095 2.1E-08 55.2 11.2 96 4-100 258-378 (382)
29 PTZ00094 serine hydroxymethylt 97.6 0.0018 3.9E-08 55.3 13.1 96 2-98 300-409 (452)
30 TIGR02326 transamin_PhnW 2-ami 97.6 0.0011 2.4E-08 54.3 11.4 92 2-95 261-360 (363)
31 TIGR01814 kynureninase kynuren 97.6 0.0011 2.3E-08 55.6 11.0 92 2-95 306-405 (406)
32 TIGR03402 FeS_nifS cysteine de 97.5 0.0019 4.2E-08 53.2 11.3 96 4-100 254-375 (379)
33 TIGR03301 PhnW-AepZ 2-aminoeth 97.4 0.0024 5.2E-08 51.5 10.4 90 3-94 257-354 (355)
34 PRK13479 2-aminoethylphosphona 97.4 0.003 6.5E-08 51.8 11.0 95 2-98 262-364 (368)
35 TIGR01366 serC_3 phosphoserine 97.3 0.0029 6.3E-08 52.6 10.7 94 2-97 258-360 (361)
36 PLN03226 serine hydroxymethylt 97.2 0.0036 7.7E-08 54.3 10.4 95 2-98 311-420 (475)
37 PLN03227 serine palmitoyltrans 97.2 0.0051 1.1E-07 51.7 11.0 94 5-99 262-384 (392)
38 PRK03080 phosphoserine aminotr 97.2 0.006 1.3E-07 50.9 11.2 97 2-100 269-376 (378)
39 PLN02822 serine palmitoyltrans 97.2 0.005 1.1E-07 53.3 10.9 95 4-99 367-479 (481)
40 PRK02948 cysteine desulfurase; 97.2 0.0045 9.8E-08 51.0 10.1 94 4-99 256-376 (381)
41 TIGR01364 serC_1 phosphoserine 97.1 0.0087 1.9E-07 49.7 11.3 93 2-95 248-346 (349)
42 COG2008 GLY1 Threonine aldolas 97.1 0.0054 1.2E-07 51.2 9.8 88 3-95 250-341 (342)
43 TIGR02539 SepCysS Sep-tRNA:Cys 97.0 0.011 2.5E-07 48.9 11.2 88 7-97 270-368 (370)
44 TIGR00461 gcvP glycine dehydro 97.0 0.01 2.2E-07 55.5 11.3 97 1-100 762-870 (939)
45 PLN02483 serine palmitoyltrans 96.9 0.0079 1.7E-07 52.2 9.8 95 4-100 368-469 (489)
46 PRK13580 serine hydroxymethylt 96.9 0.007 1.5E-07 52.9 9.5 96 2-98 336-446 (493)
47 PLN02414 glycine dehydrogenase 96.9 0.014 3.1E-07 54.8 11.7 99 1-100 802-910 (993)
48 cd06452 SepCysS Sep-tRNA:Cys-t 96.8 0.022 4.8E-07 46.7 11.3 87 6-94 262-359 (361)
49 PRK07179 hypothetical protein; 96.8 0.012 2.5E-07 49.3 9.7 90 5-98 303-399 (407)
50 PF00266 Aminotran_5: Aminotra 96.8 0.0095 2.1E-07 49.0 8.8 85 2-87 272-371 (371)
51 PRK05355 3-phosphoserine/phosp 96.8 0.015 3.2E-07 48.5 10.0 93 2-95 259-356 (360)
52 PRK05387 histidinol-phosphate 96.8 0.027 5.9E-07 45.8 11.4 87 3-95 262-351 (353)
53 PRK05367 glycine dehydrogenase 96.8 0.012 2.6E-07 55.2 10.1 88 1-92 350-437 (954)
54 TIGR00461 gcvP glycine dehydro 96.8 0.014 2.9E-07 54.7 10.4 89 1-92 338-426 (939)
55 PRK09064 5-aminolevulinate syn 96.7 0.013 2.8E-07 48.9 9.1 89 7-98 302-398 (407)
56 PLN02414 glycine dehydrogenase 96.7 0.014 3.1E-07 54.9 10.2 87 1-92 378-464 (993)
57 cd00611 PSAT_like Phosphoserin 96.7 0.024 5.1E-07 46.9 10.4 92 2-94 256-353 (355)
58 PRK05367 glycine dehydrogenase 96.6 0.03 6.4E-07 52.6 11.2 97 1-100 770-878 (954)
59 TIGR01141 hisC histidinol-phos 96.5 0.03 6.6E-07 45.4 9.9 83 3-91 259-345 (346)
60 KOG0628|consensus 96.5 0.036 7.8E-07 48.1 10.5 101 1-101 370-475 (511)
61 TIGR01821 5aminolev_synth 5-am 96.5 0.025 5.4E-07 47.2 9.5 90 6-98 300-397 (402)
62 cd00616 AHBA_syn 3-amino-5-hyd 96.5 0.024 5.1E-07 45.8 9.1 61 3-63 230-298 (352)
63 COG1003 GcvP Glycine cleavage 96.5 0.035 7.6E-07 48.0 10.1 102 1-104 341-454 (496)
64 cd00609 AAT_like Aspartate ami 96.4 0.042 9.2E-07 43.6 10.1 88 2-92 256-349 (350)
65 PRK09331 Sep-tRNA:Cys-tRNA syn 96.4 0.071 1.5E-06 44.4 11.4 88 8-97 283-381 (387)
66 PRK13393 5-aminolevulinate syn 96.4 0.026 5.6E-07 47.2 8.8 88 8-98 302-397 (406)
67 PRK05968 hypothetical protein; 96.3 0.03 6.6E-07 47.0 9.1 91 4-99 259-388 (389)
68 PRK06225 aspartate aminotransf 96.3 0.085 1.8E-06 43.6 11.7 87 11-100 284-379 (380)
69 TIGR01825 gly_Cac_T_rel pyrido 96.3 0.06 1.3E-06 44.2 10.5 92 5-98 285-382 (385)
70 PRK00011 glyA serine hydroxyme 96.2 0.063 1.4E-06 44.9 10.4 94 2-96 280-388 (416)
71 PLN02955 8-amino-7-oxononanoat 96.2 0.026 5.7E-07 49.2 8.3 86 6-100 372-464 (476)
72 TIGR01822 2am3keto_CoA 2-amino 96.2 0.049 1.1E-06 44.9 9.4 92 4-98 292-390 (393)
73 PLN02409 serine--glyoxylate am 96.1 0.14 3E-06 43.0 11.9 96 2-99 270-374 (401)
74 PRK10534 L-threonine aldolase; 96.1 0.13 2.8E-06 41.6 11.2 84 5-94 247-330 (333)
75 cd06502 TA_like Low-specificit 96.0 0.1 2.2E-06 41.9 10.2 88 2-93 245-337 (338)
76 PRK07908 hypothetical protein; 96.0 0.15 3.2E-06 41.7 11.3 85 4-95 256-345 (349)
77 PRK13392 5-aminolevulinate syn 95.9 0.073 1.6E-06 44.5 9.3 90 6-98 301-398 (410)
78 PRK05958 8-amino-7-oxononanoat 95.9 0.078 1.7E-06 43.3 9.3 88 4-94 290-384 (385)
79 cd06454 KBL_like KBL_like; thi 95.8 0.13 2.8E-06 41.4 10.1 89 4-94 253-348 (349)
80 TIGR03811 tyr_de_CO2_Ent tyros 95.8 0.014 3.1E-07 52.2 4.9 42 1-42 452-501 (608)
81 PRK06959 putative threonine-ph 95.7 0.18 3.8E-06 41.4 10.8 87 6-100 250-336 (339)
82 PRK12566 glycine dehydrogenase 95.7 0.13 2.9E-06 48.3 10.8 94 4-100 774-879 (954)
83 KOG0629|consensus 95.7 0.043 9.2E-07 47.4 7.0 94 1-94 390-506 (510)
84 PRK03317 histidinol-phosphate 95.5 0.3 6.4E-06 40.2 11.3 86 4-96 278-363 (368)
85 PRK01688 histidinol-phosphate 95.5 0.16 3.4E-06 41.7 9.7 81 5-91 266-350 (351)
86 TIGR02006 IscS cysteine desulf 95.4 0.2 4.3E-06 41.8 10.2 95 3-100 261-380 (402)
87 COG0112 GlyA Glycine/serine hy 95.4 0.35 7.5E-06 41.4 11.4 98 2-101 281-390 (413)
88 PRK03244 argD acetylornithine 95.3 0.17 3.7E-06 42.0 9.5 92 6-100 304-397 (398)
89 PRK06108 aspartate aminotransf 95.3 0.44 9.5E-06 39.1 11.8 88 4-95 285-380 (382)
90 TIGR01437 selA_rel uncharacter 95.3 0.23 5E-06 41.3 10.0 84 9-94 267-362 (363)
91 PLN02724 Molybdenum cofactor s 95.3 0.21 4.5E-06 46.1 10.5 93 2-95 337-486 (805)
92 PLN02452 phosphoserine transam 95.2 0.27 5.9E-06 41.3 10.4 91 2-93 263-359 (365)
93 PRK05937 8-amino-7-oxononanoat 95.2 0.25 5.5E-06 40.8 10.0 87 6-101 266-354 (370)
94 PRK06939 2-amino-3-ketobutyrat 95.1 0.28 6E-06 40.3 10.0 90 5-97 297-393 (397)
95 PRK02731 histidinol-phosphate 95.1 0.39 8.5E-06 39.2 10.9 87 4-96 275-365 (367)
96 KOG1359|consensus 95.1 0.22 4.9E-06 41.5 9.2 90 5-98 316-413 (417)
97 PRK04870 histidinol-phosphate 95.1 0.36 7.9E-06 39.4 10.6 85 3-94 266-355 (356)
98 cd00378 SHMT Serine-glycine hy 95.0 0.35 7.6E-06 40.0 10.2 92 2-94 276-382 (402)
99 TIGR00858 bioF 8-amino-7-oxono 94.9 0.23 5E-06 39.9 8.7 84 5-91 269-359 (360)
100 COG1104 NifS Cysteine sulfinat 94.8 0.45 9.7E-06 40.6 10.5 96 5-101 260-381 (386)
101 PRK02610 histidinol-phosphate 94.7 0.52 1.1E-05 38.9 10.7 89 3-98 283-372 (374)
102 PF02347 GDC-P: Glycine cleava 94.7 0.073 1.6E-06 45.9 5.6 87 1-89 341-427 (429)
103 PRK14012 cysteine desulfurase; 94.3 0.9 2E-05 37.9 11.3 95 3-100 263-382 (404)
104 PRK05964 adenosylmethionine--8 94.3 0.38 8.3E-06 40.7 9.1 90 6-98 328-423 (423)
105 PF00464 SHMT: Serine hydroxym 94.3 0.21 4.6E-06 42.7 7.4 82 2-85 297-389 (399)
106 PRK04635 histidinol-phosphate 94.2 0.87 1.9E-05 37.3 10.9 80 7-93 269-351 (354)
107 PRK05957 aspartate aminotransf 94.1 1.4 3E-05 36.6 12.0 93 4-98 286-386 (389)
108 PRK01533 histidinol-phosphate 93.9 0.88 1.9E-05 37.7 10.4 86 5-100 273-358 (366)
109 PRK04781 histidinol-phosphate 93.9 1.1 2.4E-05 37.0 10.9 84 5-94 273-360 (364)
110 PRK14808 histidinol-phosphate 93.9 0.77 1.7E-05 37.5 9.9 81 4-92 252-332 (335)
111 PRK06767 methionine gamma-lyas 93.9 0.51 1.1E-05 39.5 9.0 88 5-97 259-385 (386)
112 cd00610 OAT_like Acetyl ornith 93.8 0.47 1E-05 39.2 8.5 87 6-94 314-412 (413)
113 PRK14807 histidinol-phosphate 93.7 1.3 2.8E-05 36.2 10.9 84 4-94 262-349 (351)
114 COG0403 GcvP Glycine cleavage 93.6 0.97 2.1E-05 39.1 10.1 92 1-94 355-447 (450)
115 PLN03026 histidinol-phosphate 93.5 1.6 3.5E-05 36.2 11.4 85 4-93 290-378 (380)
116 PRK06425 histidinol-phosphate 93.4 1.7 3.8E-05 35.2 11.1 84 5-95 243-331 (332)
117 TIGR01365 serC_2 phosphoserine 93.4 1.4 2.9E-05 37.3 10.7 93 2-95 260-371 (374)
118 COG0075 Serine-pyruvate aminot 93.2 1.3 2.8E-05 37.7 10.3 98 1-100 261-366 (383)
119 PRK07582 cystathionine gamma-l 93.1 1.4 2.9E-05 36.7 10.3 86 5-97 245-365 (366)
120 PRK09105 putative aminotransfe 93.0 1.8 3.9E-05 35.9 10.9 82 7-95 285-368 (370)
121 PRK00950 histidinol-phosphate 92.9 1.6 3.5E-05 35.4 10.3 64 27-95 292-360 (361)
122 PRK08153 histidinol-phosphate 92.9 2.5 5.5E-05 34.9 11.5 90 5-100 274-368 (369)
123 PLN02651 cysteine desulfurase 92.8 0.68 1.5E-05 38.0 8.0 53 4-56 258-316 (364)
124 KOG1357|consensus 92.6 0.41 8.8E-06 41.7 6.4 87 4-94 404-499 (519)
125 PRK08361 aspartate aminotransf 92.5 2.6 5.6E-05 34.9 11.1 88 5-96 293-389 (391)
126 PRK05664 threonine-phosphate d 92.2 2.7 5.8E-05 34.2 10.7 83 5-94 243-325 (330)
127 PRK06173 adenosylmethionine--8 92.0 1.7 3.8E-05 37.1 9.7 89 6-98 334-426 (429)
128 TIGR00707 argD acetylornithine 91.9 1.3 2.7E-05 36.3 8.5 85 6-94 291-378 (379)
129 PF00155 Aminotran_1_2: Aminot 91.8 0.93 2E-05 36.7 7.5 84 4-91 275-363 (363)
130 PRK06207 aspartate aminotransf 91.7 4.7 0.0001 33.8 11.9 91 4-98 304-403 (405)
131 PRK06836 aspartate aminotransf 91.6 4.6 9.9E-05 33.6 11.7 83 10-97 305-391 (394)
132 PRK09265 aminotransferase AlaT 91.6 3.6 7.8E-05 34.3 11.0 87 8-98 304-402 (404)
133 TIGR01885 Orn_aminotrans ornit 91.5 1.9 4.2E-05 35.9 9.3 86 7-95 309-400 (401)
134 PRK06290 aspartate aminotransf 91.5 4 8.8E-05 34.4 11.3 92 6-99 305-407 (410)
135 PRK07682 hypothetical protein; 91.4 4.2 9.1E-05 33.4 11.1 88 6-98 281-377 (378)
136 PRK08247 cystathionine gamma-s 91.4 0.92 2E-05 37.7 7.2 89 5-98 249-365 (366)
137 PRK08064 cystathionine beta-ly 91.3 3.5 7.5E-05 34.7 10.7 91 5-102 251-387 (390)
138 TIGR01328 met_gam_lyase methio 91.3 1.8 3.9E-05 36.4 9.0 88 5-97 258-390 (391)
139 PRK07505 hypothetical protein; 91.2 2.6 5.7E-05 35.1 9.8 50 46-96 343-398 (402)
140 PRK08056 threonine-phosphate d 90.9 5.3 0.00012 32.6 11.3 82 7-94 266-352 (356)
141 PRK03321 putative aminotransfe 90.8 4.1 9E-05 33.0 10.4 85 3-95 265-349 (352)
142 PRK07568 aspartate aminotransf 90.7 8.4 0.00018 31.7 12.8 90 6-99 290-394 (397)
143 TIGR01265 tyr_nico_aTase tyros 90.6 7 0.00015 32.6 11.8 88 6-96 303-400 (403)
144 PRK05764 aspartate aminotransf 90.4 5.5 0.00012 32.8 10.9 88 6-97 293-391 (393)
145 PLN02271 serine hydroxymethylt 90.1 1.8 3.9E-05 38.8 8.1 80 2-83 432-522 (586)
146 PTZ00125 ornithine aminotransf 90.1 7.8 0.00017 32.0 11.6 89 10-101 304-399 (400)
147 PRK07865 N-succinyldiaminopime 90.1 4.8 0.0001 32.9 10.3 81 7-92 278-363 (364)
148 PRK07392 threonine-phosphate d 90.0 6.8 0.00015 32.0 11.1 81 8-94 270-356 (360)
149 PRK12566 glycine dehydrogenase 89.8 3.3 7.1E-05 39.3 9.9 76 1-79 352-427 (954)
150 PRK08045 cystathionine gamma-s 89.8 5.3 0.00012 33.6 10.5 92 4-100 249-385 (386)
151 TIGR03235 DNA_S_dndA cysteine 89.6 1.7 3.7E-05 35.3 7.3 57 3-61 259-318 (353)
152 PRK08912 hypothetical protein; 89.6 7.5 0.00016 32.1 11.1 86 5-95 286-384 (387)
153 PRK12381 bifunctional succinyl 89.2 4 8.6E-05 34.3 9.3 94 6-101 304-403 (406)
154 TIGR03539 DapC_actino succinyl 89.2 6.3 0.00014 32.2 10.3 79 6-89 271-354 (357)
155 PRK07309 aromatic amino acid a 89.0 9.6 0.00021 31.6 11.4 88 7-99 293-390 (391)
156 PRK02627 acetylornithine amino 88.9 4.6 0.0001 33.2 9.4 89 7-98 304-395 (396)
157 PRK08363 alanine aminotransfer 88.9 10 0.00022 31.5 11.5 89 5-97 296-394 (398)
158 PRK03158 histidinol-phosphate 88.9 7.6 0.00017 31.6 10.6 80 8-94 276-358 (359)
159 KOG2467|consensus 88.9 4.5 9.7E-05 34.8 9.2 80 2-83 318-408 (477)
160 PRK09221 beta alanine--pyruvat 88.5 5.9 0.00013 34.0 10.0 89 6-98 347-444 (445)
161 PRK00854 rocD ornithine--oxo-a 88.5 6.1 0.00013 32.8 9.9 87 6-95 309-399 (401)
162 PRK04260 acetylornithine amino 88.5 8.3 0.00018 31.7 10.6 85 6-94 286-374 (375)
163 TIGR01329 cysta_beta_ly_E cyst 88.4 3.9 8.5E-05 34.2 8.7 89 5-98 244-376 (378)
164 PRK03715 argD acetylornithine 88.1 3.8 8.3E-05 34.5 8.5 89 6-98 299-394 (395)
165 PRK06358 threonine-phosphate d 88.1 12 0.00026 30.7 11.3 85 4-95 264-353 (354)
166 COG0156 BioF 7-keto-8-aminopel 87.6 4.5 9.8E-05 34.5 8.6 86 5-93 294-386 (388)
167 PRK07050 cystathionine beta-ly 87.6 5.4 0.00012 33.6 9.1 90 4-98 262-392 (394)
168 PRK06460 hypothetical protein; 87.5 6.1 0.00013 33.0 9.3 91 3-98 240-375 (376)
169 PRK04073 rocD ornithine--oxo-a 87.3 7.4 0.00016 32.4 9.7 84 8-95 310-395 (396)
170 PRK07550 hypothetical protein; 86.9 16 0.00034 30.1 11.5 83 8-93 293-383 (386)
171 PRK13355 bifunctional HTH-doma 86.9 14 0.00031 32.1 11.5 87 7-97 416-514 (517)
172 PRK06107 aspartate aminotransf 86.8 14 0.00029 30.8 11.0 88 7-98 297-401 (402)
173 KOG2040|consensus 86.5 6.1 0.00013 36.4 9.0 97 2-101 814-925 (1001)
174 PRK08114 cystathionine beta-ly 86.5 5.6 0.00012 33.9 8.6 89 5-98 261-394 (395)
175 PRK15481 transcriptional regul 85.9 16 0.00034 30.8 11.1 87 5-96 337-430 (431)
176 PRK07986 adenosylmethionine--8 85.7 8 0.00017 33.1 9.3 86 6-96 332-422 (428)
177 cd00614 CGS_like CGS_like: Cys 85.7 3.2 7E-05 34.3 6.7 87 4-95 237-368 (369)
178 TIGR03246 arg_catab_astC succi 85.6 9.8 0.00021 31.8 9.6 91 6-98 300-396 (397)
179 PTZ00433 tyrosine aminotransfe 85.3 18 0.00039 30.2 11.1 88 7-98 311-409 (412)
180 PRK08117 4-aminobutyrate amino 85.1 12 0.00026 31.7 10.0 93 7-100 329-432 (433)
181 PF13991 BssS: BssS protein fa 85.1 2.5 5.3E-05 27.8 4.5 22 81-102 44-65 (73)
182 PRK07812 O-acetylhomoserine am 85.1 13 0.00028 32.0 10.2 93 3-100 296-434 (436)
183 TIGR03588 PseC UDP-4-keto-6-de 85.0 8.4 0.00018 31.8 8.9 60 3-62 257-324 (380)
184 TIGR00508 bioA adenosylmethion 84.8 11 0.00025 32.0 9.8 85 7-96 336-425 (427)
185 PLN00145 tyrosine/nicotianamin 84.8 19 0.00041 30.6 11.1 94 3-99 322-426 (430)
186 PRK05166 histidinol-phosphate 84.7 19 0.00041 29.6 10.8 82 6-94 284-368 (371)
187 PRK12301 bssS biofilm formatio 84.6 2.3 5E-05 28.5 4.3 67 33-102 9-75 (84)
188 PRK06176 cystathionine gamma-s 84.6 7.9 0.00017 32.5 8.6 89 4-97 246-378 (380)
189 TIGR01140 L_thr_O3P_dcar L-thr 84.3 13 0.00027 30.2 9.5 80 4-90 244-328 (330)
190 PRK07036 hypothetical protein; 84.3 13 0.00029 32.1 10.1 90 6-99 350-454 (466)
191 PRK00615 glutamate-1-semialdeh 84.2 21 0.00045 30.6 11.2 89 7-99 325-430 (433)
192 COG0161 BioA Adenosylmethionin 84.2 17 0.00037 31.7 10.5 92 6-101 342-447 (449)
193 PRK08249 cystathionine gamma-s 84.1 17 0.00036 30.7 10.4 92 4-100 260-396 (398)
194 PF01053 Cys_Met_Meta_PP: Cys/ 83.9 12 0.00027 31.7 9.5 89 3-96 253-386 (386)
195 TIGR01264 tyr_amTase_E tyrosin 83.8 22 0.00048 29.5 10.9 87 6-96 301-398 (401)
196 COG0160 GabT 4-aminobutyrate a 83.8 11 0.00024 32.9 9.2 93 5-98 341-446 (447)
197 PRK11522 putrescine--2-oxoglut 83.7 17 0.00036 31.5 10.4 93 6-100 355-454 (459)
198 PRK07269 cystathionine gamma-s 83.6 9.8 0.00021 31.7 8.7 88 4-96 248-363 (364)
199 PRK05630 adenosylmethionine--8 83.6 12 0.00026 31.9 9.3 86 7-97 330-420 (422)
200 COG0626 MetC Cystathionine bet 83.5 12 0.00025 32.2 9.2 89 5-98 263-395 (396)
201 PRK08861 cystathionine gamma-s 83.1 15 0.00033 31.0 9.8 91 5-100 251-386 (388)
202 PF05889 SLA_LP_auto_ag: Solub 83.0 17 0.00038 31.1 10.0 95 2-96 272-389 (389)
203 PRK07678 aminotransferase; Val 82.8 25 0.00055 30.2 11.1 94 6-99 341-451 (451)
204 PRK07504 O-succinylhomoserine 82.5 10 0.00022 31.9 8.5 90 5-99 263-397 (398)
205 PRK13360 omega amino acid--pyr 82.3 21 0.00045 30.6 10.4 90 6-98 344-441 (442)
206 PRK07811 cystathionine gamma-s 82.3 9.2 0.0002 32.1 8.1 87 5-96 259-387 (388)
207 COG0079 HisC Histidinol-phosph 81.8 29 0.00064 29.0 10.9 88 4-96 262-353 (356)
208 PRK07324 transaminase; Validat 81.7 28 0.00061 28.7 11.8 82 11-96 282-369 (373)
209 PRK08175 aminotransferase; Val 81.4 29 0.00063 28.7 11.3 87 7-97 293-389 (395)
210 PRK12462 phosphoserine aminotr 81.4 17 0.00038 30.7 9.4 90 2-92 262-357 (364)
211 PRK09028 cystathionine beta-ly 81.3 28 0.0006 29.6 10.7 91 5-100 258-390 (394)
212 PRK02936 argD acetylornithine 81.2 13 0.00027 30.5 8.4 86 6-94 288-376 (377)
213 PRK01278 argD acetylornithine 80.9 28 0.00061 28.7 10.5 87 8-97 298-388 (389)
214 COG1103 Archaea-specific pyrid 80.8 1.9 4E-05 35.8 3.2 53 9-63 283-337 (382)
215 COG3870 Uncharacterized protei 80.4 11 0.00024 26.4 6.5 70 43-113 9-84 (109)
216 PRK08637 hypothetical protein; 80.2 20 0.00043 29.7 9.3 79 16-98 304-387 (388)
217 TIGR03540 DapC_direct LL-diami 79.9 32 0.00069 28.2 11.0 69 6-75 292-367 (383)
218 PRK06105 aminotransferase; Pro 79.7 22 0.00047 30.7 9.6 91 6-100 347-452 (460)
219 PLN02760 4-aminobutyrate:pyruv 79.5 33 0.00071 30.1 10.8 90 6-99 389-493 (504)
220 PRK07480 putative aminotransfe 79.3 34 0.00074 29.5 10.7 90 7-100 346-451 (456)
221 PRK08088 4-aminobutyrate amino 79.1 34 0.00073 28.9 10.5 51 47-98 373-424 (425)
222 PLN00143 tyrosine/nicotianamin 79.1 37 0.0008 28.4 11.7 96 3-101 302-408 (409)
223 PRK08367 porA pyruvate ferredo 78.9 8 0.00017 33.0 6.7 99 32-134 261-374 (394)
224 PRK05965 hypothetical protein; 78.8 35 0.00076 29.4 10.7 96 6-104 344-454 (459)
225 PRK06234 methionine gamma-lyas 78.5 23 0.0005 29.8 9.3 89 5-98 265-398 (400)
226 TIGR01325 O_suc_HS_sulf O-succ 78.4 30 0.00064 28.9 9.9 87 4-95 250-380 (380)
227 PRK07030 adenosylmethionine--8 78.3 22 0.00047 30.8 9.3 89 6-98 344-447 (466)
228 PRK07671 cystathionine beta-ly 78.2 15 0.00033 30.7 8.1 86 5-95 247-376 (377)
229 PRK08297 L-lysine aminotransfe 78.2 21 0.00046 30.6 9.2 89 6-98 347-442 (443)
230 TIGR01324 cysta_beta_ly_B cyst 78.2 20 0.00043 30.1 8.8 87 6-97 248-376 (377)
231 PRK04612 argD acetylornithine 78.1 23 0.0005 30.0 9.2 92 6-99 308-405 (408)
232 PRK07681 aspartate aminotransf 78.0 38 0.00083 28.0 11.5 82 7-93 295-384 (399)
233 PRK08776 cystathionine gamma-s 77.8 42 0.00091 28.4 11.5 92 4-100 257-393 (405)
234 TIGR03537 DapC succinyldiamino 77.6 36 0.00079 27.6 10.7 69 5-75 259-334 (350)
235 PLN02624 ornithine-delta-amino 77.6 24 0.00053 30.5 9.4 88 8-97 348-444 (474)
236 PRK05639 4-aminobutyrate amino 77.2 25 0.00054 30.3 9.3 94 6-100 342-446 (457)
237 PRK06082 4-aminobutyrate amino 77.2 39 0.00085 29.1 10.5 92 6-100 350-454 (459)
238 PRK06434 cystathionine gamma-l 77.1 17 0.00037 30.7 8.1 88 4-96 258-383 (384)
239 PRK07495 4-aminobutyrate amino 76.8 46 0.001 28.3 11.3 94 6-100 319-424 (425)
240 PLN02187 rooty/superroot1 76.5 49 0.0011 28.5 11.5 94 5-101 338-442 (462)
241 PLN02242 methionine gamma-lyas 76.4 39 0.00084 28.8 10.2 89 5-99 278-417 (418)
242 TIGR03542 DAPAT_plant LL-diami 76.4 43 0.00094 27.8 10.8 84 7-94 311-401 (402)
243 PF01329 Pterin_4a: Pterin 4 a 75.2 15 0.00032 24.8 6.0 89 44-137 4-94 (95)
244 PRK07481 hypothetical protein; 74.5 32 0.0007 29.5 9.3 90 6-99 342-447 (449)
245 PRK08134 O-acetylhomoserine am 74.4 30 0.00066 29.6 9.1 92 4-100 293-430 (433)
246 PRK08068 transaminase; Reviewe 74.3 48 0.001 27.3 11.3 69 5-75 294-370 (389)
247 PLN02509 cystathionine beta-ly 73.9 27 0.00058 30.4 8.7 88 5-97 330-461 (464)
248 PRK09440 avtA valine--pyruvate 73.5 52 0.0011 27.3 11.3 82 15-100 315-414 (416)
249 PRK06348 aspartate aminotransf 73.4 51 0.0011 27.2 11.0 77 11-91 294-379 (384)
250 PRK06058 4-aminobutyrate amino 73.3 34 0.00074 29.2 9.1 90 6-97 340-442 (443)
251 PRK06916 adenosylmethionine--8 73.3 38 0.00082 29.2 9.4 90 6-99 353-457 (460)
252 PRK06541 hypothetical protein; 73.0 41 0.00089 29.0 9.6 94 6-100 347-458 (460)
253 KOG1360|consensus 72.9 25 0.00055 30.8 8.0 86 11-100 433-527 (570)
254 PTZ00377 alanine aminotransfer 72.9 60 0.0013 27.9 12.0 86 11-100 372-478 (481)
255 PRK05613 O-acetylhomoserine am 72.8 57 0.0012 28.1 10.4 89 4-97 302-436 (437)
256 PF04628 Sedlin_N: Sedlin, N-t 72.7 8.1 0.00017 27.6 4.4 49 58-106 61-113 (132)
257 PRK08574 cystathionine gamma-s 72.7 23 0.0005 29.7 7.8 88 5-97 250-384 (385)
258 KOG1368|consensus 72.4 58 0.0013 27.5 10.5 85 8-94 278-365 (384)
259 PRK06084 O-acetylhomoserine am 71.7 63 0.0014 27.6 11.3 91 4-99 288-424 (425)
260 PRK08248 O-acetylhomoserine am 71.4 65 0.0014 27.6 10.9 90 5-99 294-429 (431)
261 PRK09276 LL-diaminopimelate am 71.2 56 0.0012 26.8 10.3 68 6-75 294-369 (385)
262 PRK07503 methionine gamma-lyas 71.0 58 0.0013 27.4 9.9 91 5-100 264-399 (403)
263 PRK07366 succinyldiaminopimela 70.4 59 0.0013 26.7 10.7 83 6-93 294-386 (388)
264 PRK08360 4-aminobutyrate amino 69.8 47 0.001 28.5 9.2 93 6-100 325-429 (443)
265 KOG2862|consensus 69.3 59 0.0013 27.6 9.2 97 1-98 278-383 (385)
266 PRK08593 4-aminobutyrate amino 69.2 73 0.0016 27.3 11.0 95 6-102 328-434 (445)
267 PF07373 CAMP_factor: CAMP fac 68.4 6 0.00013 31.4 3.1 106 3-114 43-160 (228)
268 PRK06918 4-aminobutyrate amino 68.0 37 0.0008 29.0 8.2 53 47-100 393-446 (451)
269 PRK07337 aminotransferase; Val 67.9 67 0.0015 26.4 11.0 86 3-92 285-384 (388)
270 PLN00144 acetylornithine trans 67.3 60 0.0013 27.1 9.2 52 46-98 330-381 (382)
271 PRK06209 glutamate-1-semialdeh 66.5 53 0.0012 27.9 8.8 85 7-100 312-408 (431)
272 PRK08133 O-succinylhomoserine 66.4 77 0.0017 26.5 11.1 89 3-96 256-389 (390)
273 KOG1358|consensus 66.3 34 0.00073 29.7 7.4 86 9-95 360-463 (467)
274 PF07875 Coat_F: Coat F domain 66.2 4.9 0.00011 25.1 1.9 16 48-63 48-63 (64)
275 TIGR03372 putres_am_tran putre 66.0 63 0.0014 27.8 9.2 87 7-94 349-441 (442)
276 PRK07777 aminotransferase; Val 65.5 75 0.0016 26.1 11.0 82 7-93 288-382 (387)
277 PRK05769 4-aminobutyrate amino 65.4 69 0.0015 27.4 9.3 90 6-98 340-440 (441)
278 PRK07049 methionine gamma-lyas 65.4 86 0.0019 26.7 10.5 88 4-96 291-425 (427)
279 PRK06931 diaminobutyrate--2-ox 65.3 90 0.002 26.9 10.4 93 6-99 345-456 (459)
280 PRK07483 hypothetical protein; 64.6 91 0.002 26.7 10.0 95 6-100 326-440 (443)
281 PRK05939 hypothetical protein; 64.5 61 0.0013 27.3 8.8 88 4-96 264-395 (397)
282 PF00403 HMA: Heavy-metal-asso 64.4 28 0.00061 20.8 6.8 49 11-59 10-61 (62)
283 PRK12403 putative aminotransfe 64.2 95 0.002 26.8 10.5 89 7-99 349-454 (460)
284 TIGR00699 GABAtrns_euk 4-amino 64.2 47 0.001 28.9 8.1 85 8-94 372-463 (464)
285 PLN02913 dihydrofolate synthet 64.1 14 0.0003 32.5 4.9 72 28-99 66-148 (510)
286 PLN02397 aspartate transaminas 64.1 88 0.0019 26.4 10.3 81 4-96 335-420 (423)
287 PRK00062 glutamate-1-semialdeh 63.9 77 0.0017 26.8 9.3 89 6-98 320-425 (426)
288 PF09840 DUF2067: Uncharacteri 63.9 65 0.0014 24.8 8.0 118 2-130 42-165 (190)
289 COG1932 SerC Phosphoserine ami 63.3 95 0.0021 26.5 10.5 92 2-95 264-361 (365)
290 PRK05093 argD bifunctional N-s 63.2 87 0.0019 26.0 10.1 90 7-98 306-401 (403)
291 TIGR03531 selenium_SpcS O-phos 62.7 22 0.00048 30.8 5.9 58 1-58 321-385 (444)
292 COG1647 Esterase/lipase [Gener 62.7 8.5 0.00018 30.8 3.0 62 34-100 18-81 (243)
293 COG4992 ArgD Ornithine/acetylo 61.9 1.1E+02 0.0023 26.6 10.4 92 6-100 305-401 (404)
294 PRK06702 O-acetylhomoserine am 61.8 1.1E+02 0.0023 26.5 10.6 93 4-101 290-428 (432)
295 TIGR02407 ectoine_ectB diamino 61.5 99 0.0021 26.1 10.4 88 6-96 316-411 (412)
296 PF10894 DUF2689: Protein of u 61.3 5.3 0.00011 24.9 1.3 22 116-137 11-32 (61)
297 cd02185 AroH Chorismate mutase 61.0 29 0.00062 24.9 5.2 66 7-75 15-92 (117)
298 PRK06148 hypothetical protein; 60.8 1.1E+02 0.0024 29.3 10.5 92 6-98 907-1011(1013)
299 PRK07810 O-succinylhomoserine 60.4 1E+02 0.0023 26.0 10.2 87 4-95 267-402 (403)
300 PRK07683 aminotransferase A; V 60.3 97 0.0021 25.6 11.3 86 5-95 287-381 (387)
301 PRK09264 diaminobutyrate--2-ox 60.2 1.1E+02 0.0023 26.0 11.5 95 6-101 320-420 (425)
302 PF05166 YcgL: YcgL domain; I 60.1 11 0.00024 24.8 2.7 34 30-64 33-72 (74)
303 PRK08636 aspartate aminotransf 59.5 1E+02 0.0022 25.6 11.7 86 7-97 304-400 (403)
304 PLN02482 glutamate-1-semialdeh 59.2 97 0.0021 27.0 9.2 88 6-97 369-473 (474)
305 PRK13724 conjugal transfer pro 58.9 6.6 0.00014 24.8 1.4 21 116-136 11-31 (65)
306 PF05213 Corona_NS2A: Coronavi 58.9 13 0.00029 29.5 3.5 63 34-99 11-73 (248)
307 PRK06943 adenosylmethionine--8 58.1 1.2E+02 0.0027 26.0 10.5 89 6-98 350-447 (453)
308 COG1509 KamA Lysine 2,3-aminom 57.9 52 0.0011 28.0 7.0 100 15-135 178-279 (369)
309 cd04883 ACT_AcuB C-terminal AC 57.8 22 0.00049 21.7 3.9 31 33-63 40-70 (72)
310 cd03412 CbiK_N Anaerobic cobal 57.7 65 0.0014 22.7 7.2 57 37-102 36-99 (127)
311 PF07592 DDE_Tnp_ISAZ013: Rhod 57.6 32 0.0007 28.6 5.7 31 29-62 12-42 (311)
312 PRK06938 diaminobutyrate--2-ox 57.1 1.3E+02 0.0028 26.0 11.1 93 6-99 351-462 (464)
313 PRK06149 hypothetical protein; 56.5 1.4E+02 0.0031 28.4 10.5 90 7-97 868-970 (972)
314 PRK07046 aminotransferase; Val 55.7 1.4E+02 0.0029 25.8 11.9 89 6-99 346-452 (453)
315 PHA01735 hypothetical protein 54.9 19 0.00041 23.5 3.1 32 90-121 34-66 (76)
316 COG1724 Predicted RNA binding 54.7 28 0.00061 22.4 3.9 37 44-81 6-49 (66)
317 PF09407 DUF2005: Protein of u 54.1 11 0.00024 30.2 2.4 23 44-66 65-87 (315)
318 PRK00823 phhB pterin-4-alpha-c 54.1 66 0.0014 21.7 7.2 90 44-137 5-96 (97)
319 PRK08960 hypothetical protein; 53.8 1.2E+02 0.0027 24.8 11.2 67 9-76 293-369 (387)
320 PRK09792 4-aminobutyrate trans 53.5 1.4E+02 0.003 25.3 9.2 89 6-96 319-420 (421)
321 COG3844 Kynureninase [Amino ac 53.0 1.5E+02 0.0032 25.4 10.3 92 4-98 305-403 (407)
322 PRK14809 histidinol-phosphate 52.8 1.2E+02 0.0027 24.5 10.1 57 33-95 296-355 (357)
323 PLN02607 1-aminocyclopropane-1 52.4 1.5E+02 0.0033 25.4 10.9 91 7-101 337-441 (447)
324 PRK07590 L,L-diaminopimelate a 52.2 1.4E+02 0.003 24.9 10.4 83 7-94 318-408 (409)
325 PRK14432 acylphosphatase; Prov 52.1 34 0.00074 23.1 4.3 49 37-93 14-63 (93)
326 PRK06917 hypothetical protein; 51.8 1.5E+02 0.0033 25.3 11.2 96 6-101 326-441 (447)
327 TIGR00709 dat 2,4-diaminobutyr 51.5 1.5E+02 0.0033 25.2 10.5 90 7-98 327-436 (442)
328 PRK07482 hypothetical protein; 51.4 1.6E+02 0.0035 25.4 11.0 91 6-98 349-455 (461)
329 PRK06777 4-aminobutyrate amino 50.3 1.6E+02 0.0034 25.0 11.0 87 6-95 319-419 (421)
330 PF11193 DUF2812: Protein of u 49.9 49 0.0011 22.6 4.9 46 49-94 8-63 (115)
331 PLN00108 unknown protein; Prov 49.8 34 0.00074 27.7 4.6 81 56-136 78-178 (257)
332 KOG1404|consensus 49.6 1.6E+02 0.0035 25.6 8.7 93 4-98 332-438 (442)
333 PF12146 Hydrolase_4: Putative 49.4 17 0.00038 23.6 2.4 46 47-95 32-78 (79)
334 cd00488 PCD_DCoH PCD_DCoH: The 48.9 43 0.00092 21.4 4.2 73 58-135 1-74 (75)
335 COG0763 LpxB Lipid A disacchar 48.7 50 0.0011 28.3 5.5 54 2-61 59-112 (381)
336 PRK09082 methionine aminotrans 48.7 1.5E+02 0.0033 24.3 10.1 79 8-91 293-383 (386)
337 PRK14428 acylphosphatase; Prov 47.9 40 0.00087 23.1 4.1 43 45-93 25-68 (97)
338 PRK09147 succinyldiaminopimela 47.8 1.6E+02 0.0034 24.3 10.5 81 7-94 300-393 (396)
339 PLN00175 aminotransferase fami 46.7 1.7E+02 0.0038 24.5 12.0 87 4-95 312-411 (413)
340 KOG2040|consensus 46.5 1.4E+02 0.0029 28.1 8.1 85 1-89 391-475 (1001)
341 PRK14433 acylphosphatase; Prov 46.2 49 0.0011 22.0 4.3 41 46-92 19-60 (87)
342 TIGR01499 folC folylpolyglutam 45.5 39 0.00085 28.2 4.5 70 28-97 9-87 (397)
343 COG2107 Predicted periplasmic 45.4 37 0.0008 27.7 4.1 54 78-136 183-237 (272)
344 PF01276 OKR_DC_1: Orn/Lys/Arg 45.2 76 0.0016 27.4 6.3 31 4-34 297-330 (417)
345 PRK12389 glutamate-1-semialdeh 44.7 1.9E+02 0.0042 24.4 11.3 88 6-97 323-427 (428)
346 smart00267 GGDEF diguanylate c 44.6 95 0.002 20.8 9.0 101 2-102 53-156 (163)
347 PRK09627 oorA 2-oxoglutarate-a 44.5 1.7E+02 0.0037 24.8 8.2 50 14-63 254-305 (375)
348 PRK14089 ipid-A-disaccharide s 44.0 95 0.0021 26.0 6.6 54 2-63 52-105 (347)
349 PRK14449 acylphosphatase; Prov 43.8 54 0.0012 21.8 4.2 42 46-93 21-63 (90)
350 PF07350 DUF1479: Protein of u 43.6 65 0.0014 27.9 5.5 91 6-115 24-118 (416)
351 PTZ00376 aspartate aminotransf 43.5 1.9E+02 0.0041 24.0 10.1 80 7-97 320-403 (404)
352 PRK14421 acylphosphatase; Prov 43.3 59 0.0013 22.3 4.4 42 46-93 22-64 (99)
353 PRK05967 cystathionine beta-ly 43.0 2.1E+02 0.0045 24.3 11.4 90 5-99 261-393 (395)
354 PRK14420 acylphosphatase; Prov 42.9 57 0.0012 21.7 4.2 44 45-94 19-63 (91)
355 PRK14431 acylphosphatase; Prov 42.9 46 0.00099 22.3 3.7 48 37-93 14-61 (89)
356 PF05225 HTH_psq: helix-turn-h 42.7 19 0.00042 21.0 1.6 27 89-116 3-29 (45)
357 PRK14429 acylphosphatase; Prov 42.5 63 0.0014 21.5 4.4 48 37-93 14-62 (90)
358 PRK14427 acylphosphatase; Prov 41.7 59 0.0013 21.9 4.2 42 46-93 24-66 (94)
359 COG5418 Predicted secreted pro 41.6 35 0.00075 25.6 3.1 80 49-129 33-129 (164)
360 PRK14430 acylphosphatase; Prov 41.2 64 0.0014 21.7 4.3 48 37-93 16-64 (92)
361 PLN02672 methionine S-methyltr 41.1 3.6E+02 0.0077 26.5 12.2 86 6-96 971-1079(1082)
362 TIGR01326 OAH_OAS_sulfhy OAH/O 41.0 2.2E+02 0.0048 24.0 10.2 85 6-95 287-417 (418)
363 PRK13578 ornithine decarboxyla 41.0 3E+02 0.0066 25.6 11.3 89 4-96 418-564 (720)
364 PRK14448 acylphosphatase; Prov 40.4 73 0.0016 21.3 4.4 41 46-92 20-61 (90)
365 cd04882 ACT_Bt0572_2 C-termina 40.1 64 0.0014 18.9 3.8 26 34-61 39-64 (65)
366 PF00708 Acylphosphatase: Acyl 40.0 65 0.0014 21.2 4.1 42 46-93 22-64 (91)
367 COG1378 Predicted transcriptio 39.7 90 0.002 24.8 5.6 49 46-99 46-94 (247)
368 PF09749 HVSL: Uncharacterised 39.6 48 0.001 26.0 4.0 32 66-97 86-118 (239)
369 COG3620 Predicted transcriptio 39.3 62 0.0014 24.8 4.3 75 11-91 47-124 (187)
370 PLN02656 tyrosine transaminase 39.3 2.3E+02 0.0049 23.6 11.4 88 6-96 304-402 (409)
371 PRK14424 acylphosphatase; Prov 39.0 79 0.0017 21.4 4.5 41 46-92 25-66 (94)
372 smart00073 HPT Histidine Phosp 38.9 39 0.00084 21.3 2.8 21 82-102 2-22 (87)
373 PRK14426 acylphosphatase; Prov 38.8 65 0.0014 21.6 4.0 42 46-93 22-64 (92)
374 PRK08354 putative aminotransfe 38.2 2E+02 0.0044 22.8 9.8 56 32-93 250-308 (311)
375 PRK00694 4-hydroxy-3-methylbut 38.1 52 0.0011 29.8 4.3 51 6-63 181-236 (606)
376 COG1936 Predicted nucleotide k 38.0 44 0.00096 25.7 3.3 18 46-63 92-109 (180)
377 COG2357 PpGpp synthetase catal 38.0 1.2E+02 0.0027 24.1 6.0 55 37-102 52-112 (231)
378 PRK14422 acylphosphatase; Prov 38.0 72 0.0016 21.5 4.1 42 46-93 24-66 (93)
379 PRK05994 O-acetylhomoserine am 37.7 2.6E+02 0.0056 23.8 10.5 89 4-97 292-426 (427)
380 PRK14438 acylphosphatase; Prov 37.2 79 0.0017 21.1 4.2 42 46-93 21-63 (91)
381 PF07927 YcfA: YcfA-like prote 37.2 56 0.0012 19.3 3.2 41 49-89 3-54 (56)
382 TIGR01796 CM_mono_aroH monofun 37.2 1.5E+02 0.0034 21.1 5.9 66 7-75 15-92 (117)
383 TIGR03710 OAFO_sf 2-oxoacid:ac 37.0 2E+02 0.0044 25.6 7.8 77 15-95 444-537 (562)
384 KOG1838|consensus 36.6 13 0.00029 32.0 0.3 68 34-104 124-198 (409)
385 PRK14434 acylphosphatase; Prov 36.5 70 0.0015 21.5 3.9 49 37-93 14-64 (92)
386 PF03992 ABM: Antibiotic biosy 36.3 75 0.0016 19.2 3.8 26 77-102 8-34 (78)
387 PRK09894 diguanylate cyclase; 36.2 2E+02 0.0044 22.2 8.7 100 2-102 177-280 (296)
388 PF01041 DegT_DnrJ_EryC1: DegT 35.9 2.4E+02 0.0052 23.1 7.8 61 5-65 241-310 (363)
389 TIGR03538 DapC_gpp succinyldia 35.7 2.5E+02 0.0054 23.1 10.2 80 7-92 299-390 (393)
390 PRK14446 acylphosphatase; Prov 35.7 49 0.0011 22.2 3.0 48 37-93 14-62 (88)
391 PF10757 YbaJ: Biofilm formati 35.6 22 0.00049 25.5 1.3 22 118-139 65-86 (122)
392 PRK14423 acylphosphatase; Prov 35.0 92 0.002 20.8 4.3 48 37-93 17-65 (92)
393 cd07087 ALDH_F3-13-14_CALDH-li 34.9 2.6E+02 0.0056 23.7 7.9 59 36-102 212-271 (426)
394 PRK09622 porA pyruvate flavodo 34.8 2.4E+02 0.0051 24.1 7.7 106 26-135 259-383 (407)
395 PRK14435 acylphosphatase; Prov 34.7 1E+02 0.0022 20.5 4.4 42 46-93 20-62 (90)
396 PF07082 DUF1350: Protein of u 34.0 1E+02 0.0022 24.9 5.0 88 23-119 4-99 (250)
397 PRK14441 acylphosphatase; Prov 34.0 83 0.0018 21.1 3.9 41 46-92 23-64 (93)
398 PRK08659 2-oxoglutarate ferred 33.7 1.3E+02 0.0028 25.4 5.9 50 15-64 254-305 (376)
399 PRK09148 aminotransferase; Val 33.7 2.8E+02 0.006 23.0 11.7 89 6-99 293-392 (405)
400 PRK09444 pntB pyridine nucleot 33.6 61 0.0013 28.5 3.9 68 45-116 324-410 (462)
401 PRK08742 adenosylmethionine--8 33.2 3.2E+02 0.007 23.7 12.1 48 48-99 421-469 (472)
402 PRK14437 acylphosphatase; Prov 33.0 1.1E+02 0.0023 21.4 4.5 43 45-93 40-83 (109)
403 PF08902 DUF1848: Domain of un 32.9 1E+02 0.0022 25.1 4.9 54 14-76 15-83 (266)
404 PRK14445 acylphosphatase; Prov 32.8 88 0.0019 20.8 3.9 42 46-93 22-64 (91)
405 COG4294 Uve UV damage repair e 32.8 2.8E+02 0.0061 23.3 7.4 79 47-127 111-207 (347)
406 PRK05942 aspartate aminotransf 32.6 2.8E+02 0.0061 22.8 10.9 68 6-75 298-373 (394)
407 PRK14442 acylphosphatase; Prov 32.5 99 0.0022 20.6 4.1 42 45-92 21-63 (91)
408 PRK15400 lysine decarboxylase 32.3 4.2E+02 0.0091 24.7 11.7 89 4-94 422-556 (714)
409 COG4297 Uncharacterized protei 32.2 47 0.001 24.7 2.6 33 30-62 15-49 (163)
410 COG2608 CopZ Copper chaperone 31.7 1.4E+02 0.0029 18.8 6.1 53 10-62 13-68 (71)
411 PRK14447 acylphosphatase; Prov 31.7 95 0.0021 20.9 3.9 42 46-93 22-65 (95)
412 PRK14425 acylphosphatase; Prov 31.4 1.2E+02 0.0026 20.4 4.4 48 37-93 18-66 (94)
413 PRK02048 4-hydroxy-3-methylbut 30.6 1.1E+02 0.0025 27.8 5.1 50 6-62 177-231 (611)
414 COG1828 PurS Phosphoribosylfor 30.6 1.6E+02 0.0035 19.7 4.7 50 48-102 20-70 (83)
415 TIGR00713 hemL glutamate-1-sem 30.5 3.2E+02 0.0069 22.8 11.4 45 49-97 378-422 (423)
416 TIGR03433 padR_acidobact trans 30.2 1.7E+02 0.0037 19.5 5.8 51 46-98 41-95 (100)
417 PRK08366 vorA 2-ketoisovalerat 30.2 3E+02 0.0065 23.4 7.5 37 27-63 252-290 (390)
418 cd00913 PCD_DCoH_subfamily_a P 29.7 1.5E+02 0.0033 18.8 5.1 43 58-104 1-43 (76)
419 PF01797 Y1_Tnp: Transposase I 29.7 1.3E+02 0.0027 20.2 4.4 40 55-96 36-76 (121)
420 PRK14450 acylphosphatase; Prov 29.4 1.3E+02 0.0027 20.0 4.2 42 46-93 20-63 (91)
421 PF14085 DUF4265: Domain of un 29.2 2E+02 0.0043 20.0 6.5 57 35-93 55-111 (117)
422 PRK14436 acylphosphatase; Prov 29.0 1.3E+02 0.0027 20.2 4.1 42 46-93 22-64 (91)
423 cd04909 ACT_PDH-BS C-terminal 29.0 41 0.00089 20.4 1.6 16 46-61 54-69 (69)
424 PRK10667 Hha toxicity attenuat 28.9 34 0.00073 24.5 1.3 22 118-139 65-86 (122)
425 COG3100 Uncharacterized protei 28.7 64 0.0014 22.3 2.6 38 30-68 45-88 (103)
426 COG0074 SucD Succinyl-CoA synt 28.6 1.6E+02 0.0035 24.4 5.3 45 35-79 91-142 (293)
427 COG0436 Aspartate/tyrosine/aro 28.4 3.6E+02 0.0078 22.7 11.9 86 8-96 296-390 (393)
428 PF01765 RRF: Ribosome recycli 27.6 2.2E+02 0.0047 21.0 5.6 54 44-99 54-107 (165)
429 COG0001 HemL Glutamate-1-semia 27.5 4.2E+02 0.0091 23.2 10.3 90 7-100 325-431 (432)
430 PRK10245 adrA diguanylate cycl 27.4 3.6E+02 0.0078 22.3 9.2 99 4-102 257-358 (366)
431 KOG3487|consensus 27.2 1.3E+02 0.0028 22.0 4.1 46 57-102 67-112 (139)
432 cd01569 PBEF_like pre-B-cell c 27.1 1.9E+02 0.0042 25.0 5.8 23 40-62 330-355 (407)
433 PRK11658 UDP-4-amino-4-deoxy-L 27.0 2.4E+02 0.0051 23.4 6.3 58 3-60 253-319 (379)
434 COG0783 Dps DNA-binding ferrit 27.0 2.4E+02 0.0051 21.0 5.7 65 46-121 26-93 (156)
435 COG5625 Predicted transcriptio 26.9 1.8E+02 0.0039 20.5 4.6 39 49-100 65-105 (113)
436 TIGR00700 GABAtrnsam 4-aminobu 26.7 3.9E+02 0.0083 22.5 8.7 46 48-95 371-418 (420)
437 TIGR03006 pepcterm_polyde poly 26.7 3.3E+02 0.0072 21.7 7.3 77 10-101 26-102 (265)
438 TIGR02080 O_succ_thio_ly O-suc 26.6 3.8E+02 0.0082 22.3 11.0 87 6-97 250-381 (382)
439 KOG0434|consensus 26.4 70 0.0015 30.1 3.1 19 26-44 208-226 (1070)
440 PRK14451 acylphosphatase; Prov 26.4 1.6E+02 0.0035 19.5 4.3 43 45-93 20-63 (89)
441 cd07148 ALDH_RL0313 Uncharacte 26.0 4.2E+02 0.009 22.6 8.3 58 36-100 237-294 (455)
442 PLN02376 1-aminocyclopropane-1 25.9 4.4E+02 0.0096 22.9 11.3 88 8-99 338-440 (496)
443 PRK14440 acylphosphatase; Prov 25.8 1.5E+02 0.0033 19.7 4.1 41 46-92 21-62 (90)
444 PRK14443 acylphosphatase; Prov 25.5 1.4E+02 0.003 20.2 3.9 43 45-93 21-64 (93)
445 PF05687 DUF822: Plant protein 25.1 2E+02 0.0044 21.4 4.9 39 13-63 25-64 (150)
446 COG0285 FolC Folylpolyglutamat 25.0 1.6E+02 0.0034 25.6 5.0 69 28-96 35-112 (427)
447 cd00520 RRF Ribosome recycling 25.0 3E+02 0.0066 20.7 7.0 48 47-96 71-118 (179)
448 COG4302 EutC Ethanolamine ammo 24.6 47 0.001 27.1 1.5 52 14-65 148-200 (294)
449 PRK12414 putative aminotransfe 24.5 4E+02 0.0086 21.8 10.8 83 4-91 287-381 (384)
450 cd07095 ALDH_SGSD_AstD N-succi 24.4 4.4E+02 0.0096 22.4 8.1 58 36-100 212-270 (431)
451 PF07736 CM_1: Chorismate muta 24.2 1.1E+02 0.0023 22.0 3.2 66 7-75 15-92 (118)
452 cd07101 ALDH_SSADH2_GabD2 Myco 24.2 4.5E+02 0.0097 22.4 8.0 58 36-100 231-288 (454)
453 PF11524 SeleniumBinding: Sele 24.1 1.3E+02 0.0028 20.0 3.3 11 46-56 32-42 (81)
454 PRK14439 acylphosphatase; Prov 24.0 1.5E+02 0.0033 22.4 4.1 48 37-93 87-135 (163)
455 COG0092 RpsC Ribosomal protein 23.7 1.2E+02 0.0026 24.3 3.7 46 15-63 74-122 (233)
456 PF00171 Aldedh: Aldehyde dehy 23.7 4.6E+02 0.01 22.3 8.0 54 43-101 246-299 (462)
457 PF09186 DUF1949: Domain of un 23.6 1.6E+02 0.0034 16.9 4.0 45 47-94 8-52 (56)
458 TIGR01780 SSADH succinate-semi 23.0 3.9E+02 0.0085 22.7 7.0 54 44-102 239-293 (448)
459 cd07099 ALDH_DDALDH Methylomon 23.0 4.7E+02 0.01 22.1 8.3 59 35-100 231-289 (453)
460 cd05141 Barstar_evA4336-like B 23.0 2.2E+02 0.0048 18.3 5.5 47 44-95 29-79 (81)
461 CHL00100 ilvH acetohydroxyacid 22.7 2.1E+02 0.0046 21.6 4.8 53 47-100 16-73 (174)
462 cd07244 FosA FosA, a Fosfomyci 22.6 65 0.0014 21.5 1.8 16 46-61 69-84 (121)
463 COG3543 Uncharacterized conser 22.5 76 0.0017 23.2 2.2 34 70-103 8-41 (135)
464 PRK01021 lpxB lipid-A-disaccha 22.4 2.4E+02 0.0051 25.8 5.7 51 2-58 284-334 (608)
465 COG5616 Predicted integral mem 22.4 1.8E+02 0.0038 21.8 4.1 40 15-56 50-89 (152)
466 smart00580 PUG domain in prote 22.4 1.6E+02 0.0035 18.0 3.4 33 88-121 3-35 (58)
467 PF01738 DLH: Dienelactone hyd 22.3 1E+02 0.0022 23.0 3.0 56 46-102 29-93 (218)
468 PF08735 DUF1786: Putative pyr 22.2 1.4E+02 0.003 24.2 3.8 51 12-63 25-78 (254)
469 PRK00084 ispF 2-C-methyl-D-ery 21.8 3E+02 0.0064 20.7 5.3 45 49-102 81-125 (159)
470 PF02834 LigT_PEase: LigT like 21.7 2.2E+02 0.0048 17.9 4.5 48 47-100 11-62 (87)
471 PF02684 LpxB: Lipid-A-disacch 21.7 2.3E+02 0.005 24.0 5.2 54 2-61 56-109 (373)
472 cd07123 ALDH_F4-17_P5CDH Delta 21.2 5.7E+02 0.012 22.4 8.2 59 36-101 290-348 (522)
473 cd07097 ALDH_KGSADH-YcbD Bacil 20.7 5.4E+02 0.012 22.0 8.1 58 36-100 250-307 (473)
474 cd03568 VHS_STAM VHS domain fa 20.6 2.7E+02 0.0058 20.2 4.8 22 47-68 121-142 (144)
475 COG0177 Nth Predicted EndoIII- 20.5 1.3E+02 0.0029 23.6 3.3 18 3-20 82-99 (211)
476 PF13710 ACT_5: ACT domain; PD 20.4 1E+02 0.0022 19.0 2.2 45 47-92 6-55 (63)
477 COG3207 DIT1 Pyoverdine/dityro 20.3 37 0.0008 28.0 0.2 44 35-79 211-260 (330)
478 cd07250 HPPD_C_like C-terminal 20.3 1.5E+02 0.0032 22.2 3.5 25 37-63 86-110 (191)
479 PRK11241 gabD succinate-semial 20.2 5.8E+02 0.012 22.1 8.1 60 36-102 261-321 (482)
480 PF00990 GGDEF: GGDEF domain; 20.2 2.8E+02 0.0061 18.5 6.9 100 2-102 51-158 (161)
481 PF14322 SusD-like_3: Starch-b 20.1 1.2E+02 0.0025 21.7 2.9 23 81-103 146-168 (190)
482 PLN02925 4-hydroxy-3-methylbut 20.1 2.3E+02 0.0051 26.4 5.2 50 6-62 246-300 (733)
483 PRK14444 acylphosphatase; Prov 20.1 2.5E+02 0.0054 18.7 4.3 42 46-93 22-64 (92)
484 TIGR00151 ispF 2C-methyl-D-ery 20.0 3.4E+02 0.0075 20.2 5.3 46 48-102 77-122 (155)
No 1
>KOG1383|consensus
Probab=100.00 E-value=3.3e-36 Score=252.97 Aligned_cols=140 Identities=34% Similarity=0.692 Sum_probs=136.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
|||++.+++|+++++.|+++|+++++|.++|+|.+++++|.+..+|+|+++|.|+++||++|++|+|+++||||++.|++
T Consensus 350 eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~ 429 (491)
T KOG1383|consen 350 EGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAR 429 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccchhhhhHHHHhcCcCccccCCCCceEEEEEeeecc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCChhhHHhhhccCCCcchHHHHHHHHHHhhcCCCC
Q psy10208 81 PGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDRSIIGDFTRYYIDATYYTPD 141 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~~~p~~~~~~~a~~Yg~~~~ipd~~~v~~~~~~~~d~~y~~~~ 141 (143)
++++++|+.|+++++++++.+|.....+++++||+++++|||++++|++.-|+|++|+ ++
T Consensus 430 ~~~A~~~v~Di~~~~~el~~~p~~~~~~~~a~yg~a~~~~~~~~~~e~~~~~~d~~y~-~~ 489 (491)
T KOG1383|consen 430 EDVADRFVADIRKVVEELKSLPESKTHGMAAIYGLAQKTPDRSVVDELIVGFLDSVYT-TT 489 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCcccchhhhhhcCCchhhHHHHHHHHHHhhhc-CC
Confidence 9999999999999999999999998888899999999999999999999999999999 54
No 2
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.62 E-value=4e-15 Score=126.63 Aligned_cols=97 Identities=20% Similarity=0.447 Sum_probs=88.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecC-----CCCHHHHHHHHhhcCceecCCCCCCe-----
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSD-----VFHIYRLSSGLNKRGWNTNSLQFPVG----- 69 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~-----~~~i~~l~d~L~~rGW~v~~~~~P~~----- 69 (143)
+||+++.+++++.++++.++|+++|+|+++++ |.+++|||+.+ +.|..+++++|+++||.++.++.|..
T Consensus 322 ~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~ 401 (431)
T TIGR01788 322 EGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIV 401 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeE
Confidence 59999999999999999999999999999997 89999999976 37889999999999999999999864
Q ss_pred -eeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 70 -IHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 70 -ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+|+++++ |++++++++|++||++++.++
T Consensus 402 ~lR~~~~~-~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 402 VMRIVVRE-GFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred EEEEEecC-CCCHHHHHHHHHHHHHHHHhh
Confidence 5888864 777899999999999999876
No 3
>PLN03032 serine decarboxylase; Provisional
Probab=99.46 E-value=2.2e-13 Score=114.12 Aligned_cols=83 Identities=12% Similarity=0.219 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+||++.+++++++|+++.++|++. |++++.+|..++|+|+++. .+.+. +||+|+..+ ..+|++||+ |++
T Consensus 291 ~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~------~~~~~-~~w~l~~~~--~~~hi~vm~-~~~ 359 (374)
T PLN03032 291 RGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPM------DEAFI-KKWQLACEG--DIAHVVVMP-NVT 359 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCC------cHhHh-heeeecccC--CEEEEEECC-CCC
Confidence 599999999999999999999997 9999999999999999874 22233 799999866 489999996 677
Q ss_pred hhHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREE 94 (143)
Q Consensus 81 ~~~~~~fl~Dl~~a 94 (143)
++++|+|++||++.
T Consensus 360 ~~~id~fi~dl~~~ 373 (374)
T PLN03032 360 VEKLDEFVEELVEV 373 (374)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999863
No 4
>PRK02769 histidine decarboxylase; Provisional
Probab=99.43 E-value=8.6e-13 Score=110.68 Aligned_cols=84 Identities=13% Similarity=0.258 Sum_probs=73.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+||.++++++++.++++.++|++. |++++++|.+++|+|+++. +.+. +||+++..+ ..+|++||+ |++
T Consensus 288 ~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f~~~~-------~~~~-~~w~l~~~~--~~~hi~~~~-~~~ 355 (380)
T PRK02769 288 KGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVFPCPS-------ERIW-KKWHLATSG--NQAHIITMP-HHN 355 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEEcCCC-------HHHH-hCeeEcccC--CEEEEEECC-CCC
Confidence 599999999999999999999996 9999999999999998764 2232 899999887 489999997 666
Q ss_pred hhHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELA 96 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~ 96 (143)
++.+|+|++||++...
T Consensus 356 ~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 356 KQQIDSLIDELIFDLK 371 (380)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7888999999999865
No 5
>PLN02263 serine decarboxylase
Probab=99.42 E-value=9.1e-13 Score=113.24 Aligned_cols=87 Identities=13% Similarity=0.211 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+||++.+++++++|+++.++|+++ |++++++|..++|+|+++. +.+..|||+++..+. .+|++||+ |++
T Consensus 358 ~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~-------~~~~~~gW~L~~~~~--~~Hivvmp-hv~ 426 (470)
T PLN02263 358 RGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPK-------DEEFVRRWQLACQGN--IAHVVVMP-SVT 426 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCc-------hHHhhcceEEccCCC--cEEEEEcC-CCC
Confidence 599999999999999999999998 8999999999999998753 333569999998664 59999996 667
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELAII 98 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~ 98 (143)
++++|+|++||++.-...
T Consensus 427 ~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 427 IEKLDYFLKELVEKRSTW 444 (470)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 899999999999997643
No 6
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.29 E-value=7.8e-12 Score=107.39 Aligned_cols=88 Identities=23% Similarity=0.422 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CC-HHHHHHHHhhcCceecCCCCCCeeeEEEEecc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FH-IYRLSSGLNKRGWNTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~-i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h 78 (143)
|||+++++++++++++|+++|++.+.|+++++|.+|+|||+.++ .+ .++..+.++++||+++.++.|.++++.++. |
T Consensus 338 eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~-~ 416 (460)
T COG0076 338 EGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGT-H 416 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcccchhchHHHHHhcCceeecccCCccceeeeee-E
Confidence 69999999999999999999999988999999999999999854 33 889999999999999999999988866553 5
Q ss_pred cChhHHHHHHH
Q psy10208 79 TQPGVADKFIS 89 (143)
Q Consensus 79 ~~~~~~~~fl~ 89 (143)
+.......|..
T Consensus 417 ~~~~~~~~~~~ 427 (460)
T COG0076 417 VTGRQGLKFIV 427 (460)
T ss_pred Eeeeeeehhhc
Confidence 54344444433
No 7
>PLN02590 probable tyrosine decarboxylase
Probab=98.91 E-value=8.9e-09 Score=90.13 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=83.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC--CC---H----HHHHHHHhhcCceecCCCC---CC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV--FH---I----YRLSSGLNKRGWNTNSLQF---PV 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~--~~---i----~~l~d~L~~rGW~v~~~~~---P~ 68 (143)
+||++.++++++.|+++.+.|++.|+|+++.+|.+++|||+..+ .+ . ..|.++|.+.|=.+-+++. -.
T Consensus 424 ~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~ 503 (539)
T PLN02590 424 ENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKF 503 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEE
Confidence 59999999999999999999999999999999999999999642 11 1 3667777778865555443 24
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.+|+||+.+.+++++++.+++.|.+...++-.+
T Consensus 504 ~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~ 536 (539)
T PLN02590 504 VLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRN 536 (539)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999987776654
No 8
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.87 E-value=1.1e-08 Score=82.90 Aligned_cols=94 Identities=24% Similarity=0.439 Sum_probs=80.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-----CCHHHHHHHHhhc-CceecCCCC--CCeeeE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-----FHIYRLSSGLNKR-GWNTNSLQF--PVGIHI 72 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-----~~i~~l~d~L~~r-GW~v~~~~~--P~~ihi 72 (143)
+||.++.+++.+.++++.++|+++++++++++|+.++|+|...+ .+-.++.++|.++ ||.++.... +..+|+
T Consensus 244 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRi 323 (345)
T cd06450 244 DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRF 323 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEE
Confidence 47899999999999999999999999999998999999998754 4567899999998 798876543 457899
Q ss_pred EEEecccChhHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
+++..+++.+.+++|++.|+++
T Consensus 324 s~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 324 VVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred EecCCCCCHHHHHHHHHHHHhC
Confidence 9997776789999999998763
No 9
>PLN02880 tyrosine decarboxylase
Probab=98.73 E-value=9e-08 Score=82.90 Aligned_cols=100 Identities=11% Similarity=-0.010 Sum_probs=81.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC--CC---HH----HHHHHHhhcCceecCCC---CCC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV--FH---IY----RLSSGLNKRGWNTNSLQ---FPV 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~--~~---i~----~l~d~L~~rGW~v~~~~---~P~ 68 (143)
+||++.++++++.|+++++.|++.++|+++.+|++++|||+..+ .+ .. .+.++|.+.|-..-+.+ ...
T Consensus 376 ~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~ 455 (490)
T PLN02880 376 ENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKY 455 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEE
Confidence 58999999999999999999999999999999999999999642 12 12 35566666686555443 234
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+|++++.++++.++++.+++.|++..+++..
T Consensus 456 ~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~ 487 (490)
T PLN02880 456 VLRFAVGAPLTEERHVTAAWKVLQDEASKLLG 487 (490)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999998877644
No 10
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.69 E-value=3.6e-07 Score=74.67 Aligned_cols=91 Identities=19% Similarity=0.396 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+||.+..+++.+.++++.++|+++ |++++..|..++|+|..+ +-.++.++|.++||.+.....|..+|+++++ +++
T Consensus 279 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~--~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~-~~t 354 (371)
T PRK13520 279 EGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDP--NPDEVREKLRERGWRVSVTRCPEALRIVCMP-HVT 354 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecC--CHHHHHHHHHHCCceeccCCCCCEEEEEEEC-CCC
Confidence 478889999999999999999998 999666788899999765 5678999999999999887767789999886 667
Q ss_pred hhHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREEL 95 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai 95 (143)
++.++.|++.|++++
T Consensus 355 ~edi~~~~~~l~~~~ 369 (371)
T PRK13520 355 REHIENFLEDLKEVK 369 (371)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999998764
No 11
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.62 E-value=2e-07 Score=81.39 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=71.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC-----------------C--HH----HHHHHHhhc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF-----------------H--IY----RLSSGLNKR 57 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~-----------------~--i~----~l~d~L~~r 57 (143)
+||.++.+++++.++++.+.|++.|+|+++++|.+++|||+..+- + +. .+.++|++.
T Consensus 396 ~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~ 475 (522)
T TIGR03799 396 KGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREA 475 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 599999999999999999999999999999999999999995321 1 12 556777777
Q ss_pred CceecCC-CC--------C-CeeeEEEEecccChhHHHHHHHHH
Q psy10208 58 GWNTNSL-QF--------P-VGIHICITHMHTQPGVADKFISDV 91 (143)
Q Consensus 58 GW~v~~~-~~--------P-~~ihi~v~~~h~~~~~~~~fl~Dl 91 (143)
|=.+-+. +. + ..+|+|++++.++.+.++..+++=
T Consensus 476 G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~ 519 (522)
T TIGR03799 476 GKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQ 519 (522)
T ss_pred CCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHh
Confidence 8544332 22 1 358999999999988888777653
No 12
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.56 E-value=7.1e-07 Score=76.94 Aligned_cols=101 Identities=16% Similarity=0.275 Sum_probs=79.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cCceeEEEEec-----CCCCHHHHHHHHhhcCceecCCCCCC----ee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFG-TPATSVIALGS-----DVFHIYRLSSGLNKRGWNTNSLQFPV----GI 70 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p~l~vVaf~~-----~~~~i~~l~d~L~~rGW~v~~~~~P~----~i 70 (143)
+|++++++++++.+++++++|+++ +++.. .|.++.+.|+. ++.+..++.++|.++||++.....|. .+
T Consensus 345 ~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l 422 (481)
T PRK04366 345 EGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEAL 422 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeE
Confidence 589999999999999999999997 44433 35555566654 34688999999999999988555443 47
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHcCCCC
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQNPGL 104 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~ 104 (143)
+++++..+ +++.+|.|++.|+++.+++.++|..
T Consensus 423 ~is~~e~~-t~edid~l~~~l~~i~~~~~~~~~~ 455 (481)
T PRK04366 423 MIEPTETE-SKETLDAFIAAMKQIAEEAKENPEL 455 (481)
T ss_pred EEcccCCC-CHHHHHHHHHHHHHHHHHHHhCcHh
Confidence 77777634 4789999999999999999998743
No 13
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.55 E-value=9e-07 Score=72.45 Aligned_cols=89 Identities=21% Similarity=0.442 Sum_probs=75.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|+.++.+++.+.+++|+++|+++ |++.+.+|..++|+|..++ ..++.++|.++||.+.....|..+|++++. +.+
T Consensus 284 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~--~~~v~~~L~~~gi~v~~~~~~~~iRis~~~-~~t 359 (373)
T TIGR03812 284 EGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVDD--PEEVRKKLRDRGWYVSVTRCPKALRIVVMP-HVT 359 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeCC--HHHHHHHHHHCCceeccCCCCCEEEEEEEC-CCC
Confidence 377889999999999999999998 6766667888999998764 458999999999999877667789999986 566
Q ss_pred hhHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVRE 93 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ 93 (143)
++.++.|++.|++
T Consensus 360 ~edid~l~~~L~~ 372 (373)
T TIGR03812 360 REHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHHhh
Confidence 7899999998875
No 14
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=98.51 E-value=2.3e-06 Score=71.14 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----------CCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----------PVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----------P~~i 70 (143)
|+.++.+++.+.++++.++|++++|+++++.|..++++|..++.+-.++.+.|.++|..+..... +..+
T Consensus 293 g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~i 372 (401)
T PRK10874 293 DINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTL 372 (401)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEE
Confidence 67778888899999999999999999999888888999987777778999999999999876442 3579
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+++...+ +++.++.|++-|+++++.+
T Consensus 373 RiS~~~~n-t~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 373 RASFAPYN-TQSDVDALVNAVDRALELL 399 (401)
T ss_pred EEEecccC-CHHHHHHHHHHHHHHHHHh
Confidence 99998644 6789999999999987754
No 15
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=98.42 E-value=5.8e-06 Score=68.71 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----------CCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----------PVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----------P~~i 70 (143)
|+.++.+++.+.++++.++|++++|+++.+.|..++++|..++.+-.++.+.|.++|+.+..... +..+
T Consensus 290 g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~i 369 (398)
T TIGR03392 290 DIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTL 369 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEE
Confidence 67788889999999999999999999999888888999987777778999999999999976432 4579
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+++.. ..+.+.++.|++-|+++++.+
T Consensus 370 RvS~~~-~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 370 RASFAP-YNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred EEEeec-cCCHHHHHHHHHHHHHHHHHh
Confidence 999986 456789999999999887654
No 16
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=98.26 E-value=2.1e-05 Score=65.35 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----------C
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----------F 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----------~ 66 (143)
|..++.+++.+.++++.++|++++|+++++.+ ..++++|..++.+-.++.+.|+++|+.+.... .
T Consensus 292 g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~ 371 (403)
T TIGR01979 292 GLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGV 371 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCC
Confidence 56778899999999999999999999998753 36789998776777889999999999886421 2
Q ss_pred CCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 67 PVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 67 P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+..+|+++.. ..+++.++.|++-|+++++.+
T Consensus 372 ~~~iRiS~~~-~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 372 PATCRASFYI-YNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred CCEEEEEecc-CCCHHHHHHHHHHHHHHHHHh
Confidence 5578998874 446789999999999887764
No 17
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=98.23 E-value=2.6e-05 Score=65.60 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC------ceeEEEEecCCCCHHHHHHHHhhc-CceecCCC---------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP------ATSVIALGSDVFHIYRLSSGLNKR-GWNTNSLQ--------- 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------~l~vVaf~~~~~~i~~l~d~L~~r-GW~v~~~~--------- 65 (143)
|..++.+++.+.++++.++|++++|+++++++ ..++|+|..++.+..++.+.|.++ |..+....
T Consensus 306 g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~ 385 (424)
T PLN02855 306 GMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRY 385 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHH
Confidence 77788899999999999999999999999753 257999998777888999999887 99877532
Q ss_pred --CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 66 --FPVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 66 --~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.+..+|+++.. ..+.+.++.|++-|++++..++..
T Consensus 386 ~g~~~~iRiS~~~-ynt~~di~~l~~~l~~~~~~~~~~ 422 (424)
T PLN02855 386 LGVNASARASLYF-YNTKEEVDAFIHALKDTIAFFSSF 422 (424)
T ss_pred hCCCCeEEEEecc-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 24578998864 456799999999999999887653
No 18
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=98.09 E-value=4.1e-05 Score=62.73 Aligned_cols=88 Identities=13% Similarity=0.209 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----------CCC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----------FPV 68 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----------~P~ 68 (143)
|+.++.+++.+.++++.++|++++|++++.++ ..++++|..+..+-.++.+.|.++||.+.... .+.
T Consensus 272 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~ 351 (373)
T cd06453 272 GMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPG 351 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCC
Confidence 67788888999999999999999999998653 56789998777777899999999999886421 245
Q ss_pred eeeEEEEecccChhHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISD 90 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~D 90 (143)
.+|+++...+ +.+.+++|++-
T Consensus 352 ~iRis~~~~~-t~~di~~~~~~ 372 (373)
T cd06453 352 TVRASFGLYN-TEEEIDALVEA 372 (373)
T ss_pred eEEEEecCCC-CHHHHHHHHhh
Confidence 7999998544 46788888764
No 19
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.9e-05 Score=63.69 Aligned_cols=94 Identities=15% Similarity=0.286 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----------C
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----------P 67 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----------P 67 (143)
|..++.+...+.+.++.++|+++|+++++|.+ ..++|+|..++.+-.+++..|.++|=.+.+... +
T Consensus 297 g~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~ 376 (405)
T COG0520 297 GMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVD 376 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCC
Confidence 67889999999999999999999999999986 699999999999999999999999933333222 2
Q ss_pred CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 68 VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 68 ~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
..+|+++..-+ +.+.+|.|++=|+++.+
T Consensus 377 ~~iR~S~~~YN-t~edid~l~~aL~~~~~ 404 (405)
T COG0520 377 ATIRASLHLYN-TEEDVDRLLEALKKALA 404 (405)
T ss_pred CceEEEEeecC-CHHHHHHHHHHHHHHhh
Confidence 23888887655 47899999998888754
No 20
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.04 E-value=0.00012 Score=61.19 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----------~P~~ 69 (143)
|+.++.+++.+.++++.++|++++|++++++ +..++|+|..++.+-.++...|.++|+.+..-. .|..
T Consensus 298 g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~ 377 (406)
T PRK09295 298 GLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAM 377 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCE
Confidence 7778888999999999999999999999985 347899998877777889999999999886432 2456
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+|+++.. ..+.+.+|.|++-|+++..
T Consensus 378 iRiS~~~-ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 378 CRASLAM-YNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred EEEEccC-CCCHHHHHHHHHHHHHHHH
Confidence 8998874 4567899999998887643
No 21
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.89 E-value=0.00016 Score=59.86 Aligned_cols=87 Identities=10% Similarity=0.176 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCC-----------C--
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSL-----------Q-- 65 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~-----------~-- 65 (143)
..++.+++.+.++++.++|+++++++++++ +..+++.|..++.+..++.++|.++|-.+... .
T Consensus 292 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~ 371 (397)
T TIGR01976 292 FQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLN 371 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCC
Confidence 456677788899999999999988999875 36889999877777889999999999888653 1
Q ss_pred -CCCeeeEEEEecccChhHHHHHHHH
Q psy10208 66 -FPVGIHICITHMHTQPGVADKFISD 90 (143)
Q Consensus 66 -~P~~ihi~v~~~h~~~~~~~~fl~D 90 (143)
....+|++++. +.+++.++.|++-
T Consensus 372 ~~~~~iRis~~~-~~t~~di~~l~~~ 396 (397)
T TIGR01976 372 DEGGVVRVGLAH-YNTAEEVDRLLEA 396 (397)
T ss_pred CCCCeEEEEeec-cCCHHHHHHHHHh
Confidence 12469999986 4456778888763
No 22
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=97.86 E-value=0.0002 Score=60.61 Aligned_cols=93 Identities=13% Similarity=0.241 Sum_probs=70.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcC----ceecCCC--CCCeeeEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRG----WNTNSLQ--FPVGIHICI 74 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rG----W~v~~~~--~P~~ihi~v 74 (143)
+|+.++.+++.+.++++.++|++++|++++..+....+++..+ .+..++.++|.++| |.+...- .+..+|+++
T Consensus 348 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~-~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~ 426 (447)
T PRK00451 348 EGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLP-KPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCV 426 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecC-CCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEec
Confidence 3788999999999999999999999999985555555555532 36789999999984 4444321 235788888
Q ss_pred EecccChhHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+.. .+++.+++|++.|++.+
T Consensus 427 ~~~-~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 427 TEK-RTKEDIDALVAALGEVL 446 (447)
T ss_pred CCC-CCHHHHHHHHHHHHHHh
Confidence 753 45789999999998753
No 23
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=97.79 E-value=0.00034 Score=57.32 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc--C--ceeEEEEecCCCCHHHHHHHHhhc-CceecCC------------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT--P--ATSVIALGSDVFHIYRLSSGLNKR-GWNTNSL------------ 64 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p--~l~vVaf~~~~~~i~~l~d~L~~r-GW~v~~~------------ 64 (143)
|+.++.+++.+.++++.++|++++|++++++ | ..++++|..++++..++.+.|.++ |-.+..-
T Consensus 267 g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g 346 (376)
T TIGR01977 267 GIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIG 346 (376)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhC
Confidence 6778889999999999999999999999874 2 478999998878888999999987 6444321
Q ss_pred -CCCCeeeEEEEecccChhHHHHHHHHHHH
Q psy10208 65 -QFPVGIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 65 -~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
..+..+|++++. +.+.+.++.|++-|++
T Consensus 347 ~~~~~~iRis~~~-~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 347 TFATGTIRLSLGY-FNTEEEIEKLLEALSE 375 (376)
T ss_pred CCCCCeEEEecCC-CCCHHHHHHHHHHHhh
Confidence 134579999875 5667888888887764
No 24
>PLN02721 threonine aldolase
Probab=97.72 E-value=0.00059 Score=55.24 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeE-eccCceeEEEEecCC---CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFI-FGTPATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~v-lg~p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
.++..+.++++.+.|++++|+++ +..|..+.+.|+... .+...+.++|.++|+.+... .+..+|+++.. ..+++
T Consensus 260 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~-~~~~lR~~~~~-~~~~~ 337 (353)
T PLN02721 260 LEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPG-NSSRIRVVTHH-QISDS 337 (353)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcEEecC-CCceEEEEecC-cCCHH
Confidence 34445678899999999999976 677777888887643 57789999999999998765 35678998864 44578
Q ss_pred HHHHHHHHHHHHHHH
Q psy10208 83 VADKFISDVREELAI 97 (143)
Q Consensus 83 ~~~~fl~Dl~~ai~~ 97 (143)
.+++|++-|++++..
T Consensus 338 ~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 338 DVQYTLSCFQQAALT 352 (353)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999887653
No 25
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=97.72 E-value=0.00037 Score=56.76 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--eeEEE-EecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--TSVIA-LGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~vVa-f~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~ 73 (143)
|+.++.+++.+.++++.++|+++ |++++++|. .+.++ +..+ ..+..++++.|.++ |+.+.... .|..+|++
T Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis 334 (356)
T cd06451 256 GLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIG 334 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEe
Confidence 67788899999999999999998 899987542 44443 4443 56888999999998 99886532 34578999
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
++. +.+++.+++|++=|++++
T Consensus 335 ~~~-~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 335 HMG-EATREDVLGVLSALEEAL 355 (356)
T ss_pred cCC-CCCHHHHHHHHHHHHHHh
Confidence 886 455789999999888865
No 26
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=97.71 E-value=0.00019 Score=59.37 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC---CCCHHHHHHHHhhcCceecCCC--CCCeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD---VFHIYRLSSGLNKRGWNTNSLQ--FPVGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~--~P~~ihi~v~ 75 (143)
+|+.++.+++.+.++++.++|+++++......+..++|+|..+ +.+..+++++|.++|+.+.... .+..+|++..
T Consensus 304 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~ 383 (398)
T cd00613 304 EGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPT 383 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcC
Confidence 3778889999999999999999997665444566677777765 3456789999999999887642 4567899886
Q ss_pred ecccChhHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISD 90 (143)
Q Consensus 76 ~~h~~~~~~~~fl~D 90 (143)
. ..+++.+|+|++-
T Consensus 384 ~-~~t~edid~~~~~ 397 (398)
T cd00613 384 E-TETKEELDALLEA 397 (398)
T ss_pred C-CCCHHHHHHHHHh
Confidence 5 4456788888764
No 27
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=97.62 E-value=0.00072 Score=57.30 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---------CCCeee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---------FPVGIH 71 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---------~P~~ih 71 (143)
.+..+++.+++++|+++|+++ ||.++. ++.+-.|.|.+...+...+.++|++.|..++..+ .|..+|
T Consensus 285 ~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR 363 (416)
T PRK13034 285 KTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIR 363 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeE
Confidence 345688999999999999998 999875 2334445566667788899999999999887632 244688
Q ss_pred EEEEe----cccChhHHHHHHHHHHHHHH
Q psy10208 72 ICITH----MHTQPGVADKFISDVREELA 96 (143)
Q Consensus 72 i~v~~----~h~~~~~~~~fl~Dl~~ai~ 96 (143)
++++. .| +++.++++++-|++++.
T Consensus 364 ~~~~~~t~~~~-~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 364 IGTPAGTTRGF-GEAEFREIANWILDVLD 391 (416)
T ss_pred eCcHHHHhCCC-CHHHHHHHHHHHHHHHh
Confidence 87664 23 35788888888888866
No 28
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=97.62 E-value=0.00095 Score=55.17 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ce-eEEEEecCCCCHHHHHHHHhhcCceecCCC-C-------------
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP--AT-SVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F------------- 66 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l-~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~------------- 66 (143)
.++.+++...++++.++|++++|+++++++ .. ++++|..++.+-.++...|.++|-.+..-. |
T Consensus 258 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~ 337 (382)
T TIGR03403 258 DFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVA 337 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHH
Confidence 344456677888999999999999999864 33 477888777788888989999998887411 0
Q ss_pred --------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 67 --------PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 67 --------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
...+|++++. .++.+.+|.|++-|+++++.++.
T Consensus 338 ~g~~~~~~~~~iR~s~~~-~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 338 IGADKELAHTAIRLSLSR-FTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred cCCChHHhCeeEEEECCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 1468999986 55678999999999999888775
No 29
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=97.61 E-value=0.0018 Score=55.34 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCC--------CCCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSL--------QFPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~--------~~P~~i 70 (143)
|+.++.+++.+++++|.++|++. |+++++. +...+|.|...+.+-..+...|+++|..++.. ..|+++
T Consensus 300 ~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~v 378 (452)
T PTZ00094 300 EWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGV 378 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeE
Confidence 67788899999999999999986 9999852 34567778877888889999999999998743 235678
Q ss_pred eEEEEeccc---ChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHT---QPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h~---~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+......+ +++.++.+++-|++++...
T Consensus 379 Ris~~~~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 379 RLGTPALTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred EECCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 888743221 2688999999888888764
No 30
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=97.61 E-value=0.0011 Score=54.34 Aligned_cols=92 Identities=8% Similarity=0.119 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ceeE-EEEecCC---CCHHHHHHHHhhcCceecCCCC--CCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATSV-IALGSDV---FHIYRLSSGLNKRGWNTNSLQF--PVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~v-Vaf~~~~---~~i~~l~d~L~~rGW~v~~~~~--P~~ihi~ 73 (143)
|+.++.+++.+.+.++.++|+++ |++++.++ ..|+ ++|..++ ++..++.+.|+++|..+..... +..+|++
T Consensus 261 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~ 339 (363)
T TIGR02326 261 GVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIG 339 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEe
Confidence 57888899999999999999998 88887654 4454 4566543 6778899999999999866543 4578998
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
.+. +.+.+.++.|++-|++++
T Consensus 340 ~~~-~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 340 NIG-EVDAADITRLLTAIGKAM 360 (363)
T ss_pred cCC-CCCHHHHHHHHHHHHHHh
Confidence 764 456789999999888765
No 31
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=97.57 E-value=0.0011 Score=55.59 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhC----CCeeEeccC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSM----DGLFIFGTP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i----~g~~vlg~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~ 73 (143)
|..++.+++.+.++++.++++++ +|+++++.. ..++|+|..+ .+..++...|.++|=.+. ...+..+|++
T Consensus 306 g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~~~~~~~~L~~~gi~v~-~~~~~~iRiS 383 (406)
T TIGR01814 306 GMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VPGKAVFQALIKRGVIGD-KREPSVIRVA 383 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CCHHHHHHHHHHCCEEEe-ccCCCeEEEe
Confidence 56778888999999999999886 469998752 2468899877 677899999999987654 3335679998
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+++.+.+.+.++.|++-|++++
T Consensus 384 ~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 384 PVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred chhccCCHHHHHHHHHHHHHHh
Confidence 8755667899999999888764
No 32
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=97.49 E-value=0.0019 Score=53.17 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCeeEeccCc--ee-EEEEecCCCCHHHHHHHHhhcCceecCCC--------------
Q psy10208 4 VNTTRSIIETVKYIEKELRS-MDGLFIFGTPA--TS-VIALGSDVFHIYRLSSGLNKRGWNTNSLQ-------------- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~--l~-vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-------------- 65 (143)
.++.+++.+.++++.++|++ ++++++.+++. .| +++|..+..+-.++...|.++|=.+..-.
T Consensus 254 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~ 333 (379)
T TIGR03402 254 EEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLR 333 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHH
Confidence 44556777788899999986 99999998642 33 77777666778899999999997765421
Q ss_pred --------CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 66 --------FPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 66 --------~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+.++|+++.. .++++.++.|++-|+++++.++.
T Consensus 334 ~lg~~~~~~~~~vR~S~~~-~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 334 AMGVPHTAAHGSIRFSLSR-YNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HcCCChhhcCceEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 13579999975 45679999999999999887765
No 33
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=97.37 E-value=0.0024 Score=51.52 Aligned_cols=90 Identities=9% Similarity=0.155 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--ee-EEEEecCC---CCHHHHHHHHhhcCceecCCCC--CCeeeEEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--TS-VIALGSDV---FHIYRLSSGLNKRGWNTNSLQF--PVGIHICI 74 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~-vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~--P~~ihi~v 74 (143)
+.+..++..+.++++.+.|+++ |++++.++. .+ +++|..++ .+..++.++|.++|..+..... ...+|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~ 335 (355)
T TIGR03301 257 VPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGT 335 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEec
Confidence 6777888889999999999998 888776542 33 45666543 5667899999999999866432 35788887
Q ss_pred EecccChhHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREE 94 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~a 94 (143)
+. +.+.+.++.|++-|+++
T Consensus 336 ~~-~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 336 IG-EIDAADIERLLEAIKDA 354 (355)
T ss_pred CC-CCCHHHHHHHHHHHHhh
Confidence 64 45678999999988765
No 34
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=97.37 E-value=0.003 Score=51.77 Aligned_cols=95 Identities=7% Similarity=0.150 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--ee-EEEEecC---CCCHHHHHHHHhhcCceecCCCC--CCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--TS-VIALGSD---VFHIYRLSSGLNKRGWNTNSLQF--PVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~-vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~~--P~~ihi~ 73 (143)
|+.++.+++.+.++++.++|+++ |++++.++. .| +++|... .+|..++.++|.++|..+..... +..+|++
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis 340 (368)
T PRK13479 262 GVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIG 340 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEe
Confidence 46777889999999999999998 898876542 23 4667653 25778899999999999965432 3478887
Q ss_pred EEecccChhHHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+. +.+++.++.|++-|+++++.+
T Consensus 341 ~~~-~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 341 CIG-DVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred cCC-CCCHHHHHHHHHHHHHHHHHc
Confidence 654 445789999999999887654
No 35
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=97.34 E-value=0.0029 Score=52.59 Aligned_cols=94 Identities=9% Similarity=-0.043 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc------CceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT------PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~------p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi 72 (143)
|...+.++....++++.++++++++++++.. +..++|+|. +++|..++.+.|+++|-.+.... .+..+|+
T Consensus 258 g~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~-~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRi 336 (361)
T TIGR01366 258 GLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV-DDIDAATVAKILRANGIVDTEPYRKLGRNQLRV 336 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC-CccCHHHHHHHHHHCCCeeccCccccCCCcEEE
Confidence 5777788899999999999999987887642 234678884 77899999999999997764431 1346899
Q ss_pred EEEecccChhHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.++. +++.+.++.|++-|+++++.
T Consensus 337 s~~~-~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 337 AMFP-AIDPDDVEALTECVDWVVER 360 (361)
T ss_pred EcCC-CCCHHHHHHHHHHHHHHHhh
Confidence 9986 66789999999999987664
No 36
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=97.23 E-value=0.0036 Score=54.28 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
|+.++.+++.+++++|+++|++. ||++++. ..+.+|.|+..+++-.++...|.+.|..++.-. .|+++
T Consensus 311 ~~~~~~~~~~~na~~L~~~L~~~-G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~gi 389 (475)
T PLN03226 311 EFKAYQKQVKANAAALANRLMSK-GYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGV 389 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCc
Confidence 67888999999999999999995 9999963 467777777777787789999999998887643 47788
Q ss_pred eE----EEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 71 HI----CITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi----~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+ ..++.+. ++.++++.+=|.++++..
T Consensus 390 RiGt~~lt~~g~~-~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 390 RIGTPAMTSRGLV-EKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred ccCcHHHHHCCCC-HHHHHHHHHHHHHHHHHh
Confidence 88 4444443 466777777777777654
No 37
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=97.22 E-value=0.0051 Score=51.68 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhhC--C-------CeeEeccCceeEEEEecCCC----------CHHHHHHHHhhcCceecC--
Q psy10208 5 NTTRSIIETVKYIEKELRSM--D-------GLFIFGTPATSVIALGSDVF----------HIYRLSSGLNKRGWNTNS-- 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i--~-------g~~vlg~p~l~vVaf~~~~~----------~i~~l~d~L~~rGW~v~~-- 63 (143)
+..+++.+.+++++++|++. + ++.+.+++..|++++...+. -...+.+.|.++|+.+..
T Consensus 262 ~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~ 341 (392)
T PLN03227 262 QLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTG 341 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecc
Confidence 45667788899999999863 1 22233445667777764321 125888999999998843
Q ss_pred -------CCCC-CeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 64 -------LQFP-VGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 64 -------~~~P-~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+..| ..+|++++..|+ ++.++++++-|+++++.+.
T Consensus 342 ~~~~~~~~~~P~~~iR~~~~~~~t-~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 342 GHVKKFLQLVPPPCLRVVANASHT-REDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred cccCCcCCCCCCceEEEEecCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 1234 467999998776 6899999999999987763
No 38
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=97.20 E-value=0.006 Score=50.88 Aligned_cols=97 Identities=7% Similarity=-0.016 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-C---ceeEEEEecCC----CCHHHHHHHHhhcCceecCCC---CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-P---ATSVIALGSDV----FHIYRLSSGLNKRGWNTNSLQ---FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p---~l~vVaf~~~~----~~i~~l~d~L~~rGW~v~~~~---~P~~i 70 (143)
|..++.++....++++.+++++++++++++. | ..++++|..++ .+ .++...|.++|..+..-. .+..+
T Consensus 269 G~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~-~~~~~~l~~~~i~v~~g~~~~~~~~v 347 (378)
T PRK03080 269 GLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVD-AAAVAKLLRENGAVDIEPYRDAPNGL 347 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHH-HHHHHHHHHcCCeeccccccCCCCcE
Confidence 6778888899999999999999988888752 3 23589998654 33 345666766777665422 24679
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
|++++. ..+.+.++.|++-|+++++.++.
T Consensus 348 Ris~~~-~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 348 RIWCGP-TVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred EEecCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 999774 66789999999999998887764
No 39
>PLN02822 serine palmitoyltransferase
Probab=97.19 E-value=0.005 Score=53.28 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC------C---HHHHHHHHh-hcCceecCCC--------
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF------H---IYRLSSGLN-KRGWNTNSLQ-------- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~------~---i~~l~d~L~-~rGW~v~~~~-------- 65 (143)
.+..+++.+.++++.++|++++|+.+...+..|++-+..++. + ..+++++|- ++|..+....
T Consensus 367 ~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~ 446 (481)
T PLN02822 367 PSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCR 446 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCC
Confidence 456778889999999999999899887666677766544321 2 357899985 8898887432
Q ss_pred CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 66 FPVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 66 ~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.|+.+|++++..|+ .+.++++++-|++++..+-
T Consensus 447 ~~~~lRi~is~~~t-~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 447 LPVGIRLFVSAGHT-ESDILKASESLKRVAASVL 479 (481)
T ss_pred CCCcEEEEECCCCC-HHHHHHHHHHHHHHHHHHh
Confidence 14579999998775 6899999999998887654
No 40
>PRK02948 cysteine desulfurase; Provisional
Probab=97.17 E-value=0.0045 Score=51.03 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEe--cc--Ccee-EEEEecCCCCHHHHHHHHhhcCceecCCC-------C-----
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIF--GT--PATS-VIALGSDVFHIYRLSSGLNKRGWNTNSLQ-------F----- 66 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vl--g~--p~l~-vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-------~----- 66 (143)
.++.+++.+.++++.++|+++ |+++. ++ +.+| +++|..+.++-.++...|.++|-.+.... .
T Consensus 256 ~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~ 334 (381)
T PRK02948 256 QEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTM 334 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHH
Confidence 456678888999999999998 55544 22 2344 77888777777888889999999887422 0
Q ss_pred ----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 67 ----------PVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 67 ----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
...+|++++.- .+++.++.|++-|+++++.+-
T Consensus 335 ~~~~~~~~~~~~~lRis~~~~-~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 335 LAIGKTYEEAKQFVRFSFGQQ-TTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred HHcCCChHHhCceEEEEcCCC-CCHHHHHHHHHHHHHHHHHHh
Confidence 24699998864 457899999999998876543
No 41
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=97.12 E-value=0.0087 Score=49.68 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cC--ce-eEEEEecCCCCH-HHHHHHHhhcCceecCCC-CCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG-TP--AT-SVIALGSDVFHI-YRLSSGLNKRGWNTNSLQ-FPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p--~l-~vVaf~~~~~~i-~~l~d~L~~rGW~v~~~~-~P~~ihi~v~ 75 (143)
|..++.++..+.++++.++|++++||+... +| .. +|++|..++..+ .++-..+.++|-...... .+..+|+++.
T Consensus 248 G~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~ 327 (349)
T TIGR01364 248 GVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRSVGGMRASIY 327 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCccccCeeEEECc
Confidence 688999999999999999999999887764 23 23 679998764322 455567778997555544 3567999997
Q ss_pred ecccChhHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai 95 (143)
. ..+.+.++.|++-|++..
T Consensus 328 ~-~nt~edid~l~~al~~~~ 346 (349)
T TIGR01364 328 N-AMPLEGVQALVDFMKEFQ 346 (349)
T ss_pred C-CCCHHHHHHHHHHHHHHH
Confidence 5 556789999999888753
No 42
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0054 Score=51.21 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecC--CCCCC--eeeEEEEecc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNS--LQFPV--GIHICITHMH 78 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~--~~~P~--~ihi~v~~~h 78 (143)
|+.....--+.|++|++++++.+|+++..+|+.|.|=+..+. ...+.++..||.... .-.+. -+|++.. .-
T Consensus 250 ~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~----~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts-~a 324 (342)
T COG2008 250 WRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPE----SAIEALRLAGALFYRGVLIGAHGEIVRFVTS-WA 324 (342)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECCh----HHHHHHHhhchhheeeeeccCCCceEEEEee-cc
Confidence 444444444459999999999999999999999998776654 223889999998887 33443 4888655 56
Q ss_pred cChhHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREEL 95 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai 95 (143)
++++.+++|+..+++.+
T Consensus 325 ~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 325 TSEEDVDELVAAIKALL 341 (342)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 77899999999998764
No 43
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=97.03 E-value=0.011 Score=48.86 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEec--cCceeEEEEecCCC---------CHHHHHHHHhhcCceecCCCCCCeeeEEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFG--TPATSVIALGSDVF---------HIYRLSSGLNKRGWNTNSLQFPVGIHICIT 75 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg--~p~l~vVaf~~~~~---------~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~ 75 (143)
.++..+.+++++++|+++ ||++++ ++..++|.|..+.. +...+.+.|.++|-.......+..+|++++
T Consensus 270 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~~~~iRis~~ 348 (370)
T TIGR02539 270 WDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQTKYFKLSVY 348 (370)
T ss_pred HHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCcceEEEEEec
Confidence 345567788999999998 899864 45778887765432 224689999999975222223446888885
Q ss_pred ecccChhHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.| +++.++++++-|++..++
T Consensus 349 -~~-t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 349 -GL-TKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred -CC-CHHHHHHHHHHHHHHHHh
Confidence 45 578999999999887654
No 44
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=96.97 E-value=0.01 Score=55.51 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=73.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecC------CCCHHHHHHHHhhcCceecCCCCCC--
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSD------VFHIYRLSSGLNKRGWNTNSLQFPV-- 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~------~~~i~~l~d~L~~rGW~v~~~~~P~-- 68 (143)
+|++++++..+.+|+||+++|++ +++++.+ +...=++|+.+ +.+.-+++.+|.++|.+-+....|.
T Consensus 762 ~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g 839 (939)
T TIGR00461 762 EGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPG 839 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCC
Confidence 58999999999999999999987 6788765 33444666554 3678899999999999988866553
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+=+++|-. .+.+.+|+|++-|.++-+++++
T Consensus 840 ~lmiepTE~-eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 840 TLMVEPTES-ESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred eEEEEeecc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 333445542 2468899999988877777765
No 45
>PLN02483 serine palmitoyltransferase
Probab=96.94 E-value=0.0079 Score=52.20 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhcCceecCCCC---C---CeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQF---P---VGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~---P---~~ihi~v~~ 76 (143)
.+..+++.+.++++.++|+++ |+.+.++...|++.+.. ...+..+++++|.++|-.+..... | ..+|+++..
T Consensus 368 ~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa 446 (489)
T PLN02483 368 AQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISA 446 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCC
Confidence 345667888999999999998 88888765445555432 223566899999999977754322 2 357999987
Q ss_pred cccChhHHHHHHHHHHHHHHHHHc
Q psy10208 77 MHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.|+ .+.+++.++-|+++.+.+.-
T Consensus 447 ~~t-~edId~~l~~L~~~~~~~~~ 469 (489)
T PLN02483 447 SHS-REDLIKALEVISEVGDLVGI 469 (489)
T ss_pred CCC-HHHHHHHHHHHHHHHHHhCc
Confidence 665 68899999999988876653
No 46
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=96.94 E-value=0.007 Score=52.92 Aligned_cols=96 Identities=11% Similarity=0.152 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cCceeEEEEecC--CCCHHHHHHHHhhcCceecCCCC---------CCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG-TPATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQF---------PVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~~---------P~~ 69 (143)
+|++.++++++++++|+++|.+. ||.+++ ..+.++|.+... ..+...+++.|.+.|..++.-.. +..
T Consensus 336 ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~sr 414 (493)
T PRK13580 336 EFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSG 414 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCce
Confidence 46778999999999999999998 999873 223344444333 33445788899999999986432 345
Q ss_pred eeEEEEeccc---ChhHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHT---QPGVADKFISDVREELAII 98 (143)
Q Consensus 70 ihi~v~~~h~---~~~~~~~fl~Dl~~ai~~~ 98 (143)
+||.++..|+ +.+.++.+++-|.++++..
T Consensus 415 LRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 415 IRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred EEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 8998876444 3567777777777776644
No 47
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=96.90 E-value=0.014 Score=54.82 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=74.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc--Cc--eeEEEEec----CCCCHHHHHHHHhhcCceecCCCCC--Cee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT--PA--TSVIALGS----DVFHIYRLSSGLNKRGWNTNSLQFP--VGI 70 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~--l~vVaf~~----~~~~i~~l~d~L~~rGW~v~~~~~P--~~i 70 (143)
+|.+++++.++.+|.|++++|++..++...+. |. -.++.++. .+.+..+++++|.++|.+.+....| ..+
T Consensus 802 ~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~l 881 (993)
T PLN02414 802 EGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTL 881 (993)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEE
Confidence 58899999999999999999988444444333 31 23455541 1377889999999999988876544 467
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+++.+-... .+.+|+|++-|+.+.+++++
T Consensus 882 miepTE~~s-keelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 882 MIEPTESES-KAELDRFCDALISIREEIAD 910 (993)
T ss_pred EEEeeeeCC-HHHHHHHHHHHHHHHHHHHH
Confidence 777776544 68899999999998888876
No 48
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=96.83 E-value=0.022 Score=46.73 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCC---------CHHHHHHHHhhcCceecCCCCCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVF---------HIYRLSSGLNKRGWNTNSLQFPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~---------~i~~l~d~L~~rGW~v~~~~~P~~ihi~v 74 (143)
..++..+.+++++++|++++|++++++ ...|++.|....+ +-+++.+.|.++|-..........+|+++
T Consensus 262 ~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~ 341 (361)
T cd06452 262 RWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLST 341 (361)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEe
Confidence 344445677899999999999999853 4567787776432 12358899999997753222223456655
Q ss_pred EecccChhHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREE 94 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~a 94 (143)
+ .+ +++..+.|++-|+++
T Consensus 342 ~-g~-~~e~~~~l~~al~~~ 359 (361)
T cd06452 342 Y-GL-TWEQVEYVVDAFKEI 359 (361)
T ss_pred c-CC-CHHHHHHHHHHHHHH
Confidence 3 34 467888888887765
No 49
>PRK07179 hypothetical protein; Provisional
Probab=96.83 E-value=0.012 Score=49.31 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCC------CCCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQ------FPVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~------~P~~ihi~v~~~ 77 (143)
+..+++.+.++++.++|+++ |+++.+. .+++.+.... .+...+.+.|.++|..++... .+..+||++...
T Consensus 303 ~~~~~l~~~~~~l~~~L~~~-g~~v~~~--~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~ 379 (407)
T PRK07179 303 DRRARLHANARFLREGLSEL-GYNIRSE--SQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNAD 379 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCCC--CCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCC
Confidence 45677888899999999998 8887743 3567665432 245678899999998744321 134689999865
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+ .+.++++++-|++++++.
T Consensus 380 ~t-~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 380 LT-ASDLDRVLEVCREARDEV 399 (407)
T ss_pred CC-HHHHHHHHHHHHHHHHhh
Confidence 54 688999999888876653
No 50
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=96.80 E-value=0.0095 Score=49.02 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F---------- 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~---------- 66 (143)
|..++.+++.+.++++.++|++++++++++. ...++++|..++.+..++...|+++|=.+.... +
T Consensus 272 g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~ 351 (371)
T PF00266_consen 272 GIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGM 351 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHT
T ss_pred ccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCC
Confidence 5677888999999999999999999999882 246889998888999999999999998877622 2
Q ss_pred CCeeeEEEEecccChhHHHHH
Q psy10208 67 PVGIHICITHMHTQPGVADKF 87 (143)
Q Consensus 67 P~~ihi~v~~~h~~~~~~~~f 87 (143)
..++|+++.. ..+.+.+++|
T Consensus 352 ~~~iRvS~~~-~nt~~dv~~l 371 (371)
T PF00266_consen 352 GGVIRVSLHY-YNTEEDVDRL 371 (371)
T ss_dssp TTEEEEE-GT-TSSHHHHHHH
T ss_pred CCEEEEeccC-CCCHHHHhhC
Confidence 2689999754 4456666665
No 51
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=96.79 E-value=0.015 Score=48.46 Aligned_cols=93 Identities=9% Similarity=-0.070 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ce-eEEEEecCCC-CHHHHHHHHhhcCceecCCCC-CCeeeEEEEe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP--AT-SVIALGSDVF-HIYRLSSGLNKRGWNTNSLQF-PVGIHICITH 76 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l-~vVaf~~~~~-~i~~l~d~L~~rGW~v~~~~~-P~~ihi~v~~ 76 (143)
|..++.++..+.++++.++|++++.+..+.+| .. ++++|..++. +..++-+.+.++|-+...... +..+|+++..
T Consensus 259 G~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~ 338 (360)
T PRK05355 259 GVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYN 338 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCC
Confidence 68899999999999999999999744444432 23 5799987653 334555677889988755543 5679999975
Q ss_pred cccChhHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREEL 95 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai 95 (143)
..+.+.++.|++-|++..
T Consensus 339 -~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 339 -AMPLEGVQALVDFMKEFE 356 (360)
T ss_pred -CCCHHHHHHHHHHHHHHH
Confidence 555789999999888854
No 52
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=96.79 E-value=0.027 Score=45.78 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCC---CeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFP---VGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P---~~ihi~v~~~h~ 79 (143)
+.+..+++.+.++.+.+.|+++ |+.+. .+..+.+.+..++.+..++++.|.++|+.+.....| ..+|+++.
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---- 335 (353)
T PRK05387 262 FEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---- 335 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC----
Confidence 4566777888899999999998 78754 445566666666678889999999999998654333 45788775
Q ss_pred ChhHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREEL 95 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai 95 (143)
+.+.++.+++-|++++
T Consensus 336 ~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 336 TDEEMEALVDALKEIL 351 (353)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 2467888888888764
No 53
>PRK05367 glycine dehydrogenase; Provisional
Probab=96.77 E-value=0.012 Score=55.22 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|-+++++++...+.+++++|++ .|+++..++....|.|+.. .+..++.++|.++|.++... .+..++++++--+ +
T Consensus 350 ~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~-~~~~~i~~~l~~~gi~~~~~-~~~~l~is~~e~~-t 425 (954)
T PRK05367 350 EGLKAIARRVHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVG-GDAAAVLARALAAGINLRRV-DDDHVGISLDETT-T 425 (954)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCC-CCHHHHHHHHHHCCceeccc-cCCEEEEEecccC-C
Confidence 47889999999999999999988 5999988877788888764 37889999999999998543 2557899998644 4
Q ss_pred hhHHHHHHHHHH
Q psy10208 81 PGVADKFISDVR 92 (143)
Q Consensus 81 ~~~~~~fl~Dl~ 92 (143)
++.++.|++-+.
T Consensus 426 ~~did~l~~~l~ 437 (954)
T PRK05367 426 REDLAALLAVFG 437 (954)
T ss_pred HHHHHHHHHHHc
Confidence 678888888776
No 54
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=96.77 E-value=0.014 Score=54.66 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|-++++++++..|.+|+++|++ .|++++.+|-+..|.++....+..++.+++.++|.++... ....+.++++-.++
T Consensus 338 ~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~~-~~~~i~~s~~E~~t- 414 (939)
T TIGR00461 338 KGLKNIARRIHSLTSILANGLEN-DPHELINKTWFDTLTVKVGNGISSELLKAAEEFNINLRAV-DTTTVGIALDETTT- 414 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCccceEEEEeCCCCHHHHHHHHHHCCCeeeec-CCCEEEEEeecCCC-
Confidence 47899999999999999999999 5999998876667766654346788999999999997752 23468899998665
Q ss_pred hhHHHHHHHHHH
Q psy10208 81 PGVADKFISDVR 92 (143)
Q Consensus 81 ~~~~~~fl~Dl~ 92 (143)
++.++.|++-+.
T Consensus 415 ~~di~~l~~~~~ 426 (939)
T TIGR00461 415 KADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHHhc
Confidence 566777776663
No 55
>PRK09064 5-aminolevulinate synthase; Validated
Probab=96.72 E-value=0.013 Score=48.91 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHh-hcCceecCCCCC------CeeeEEEEecc
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLN-KRGWNTNSLQFP------VGIHICITHMH 78 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~-~rGW~v~~~~~P------~~ihi~v~~~h 78 (143)
.+++.+.++++.++|+++ |+++++ +..+++.|.... .+..+++++|. ++|+.+.....| ..+|+++...|
T Consensus 302 ~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~ 379 (407)
T PRK09064 302 RERHQERAAKLKAALDAA-GIPVMP-NESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFH 379 (407)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCC
Confidence 466788999999999997 788765 445666665432 34567888886 569998764433 34788887555
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAII 98 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+ .+.++.|++-|++++..+
T Consensus 380 t-~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 380 T-DEMIDHLVEALVEVWARL 398 (407)
T ss_pred C-HHHHHHHHHHHHHHHHHc
Confidence 4 689999999999887654
No 56
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=96.71 E-value=0.014 Score=54.89 Aligned_cols=87 Identities=10% Similarity=0.138 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
.|-+++++++...+.+++++|++. |+++.++|....|+|+.+ +-.++.++|.++|-.+.... ...++++++..++
T Consensus 378 ~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~~~~~f~~vt~~~~--~~~~v~~~L~~~gI~l~~~~-~~~lrvs~~e~~T- 452 (993)
T PLN02414 378 EGLKTIAQRVHGLAGVFAAGLKKL-GFQVQSLPFFDTVKVKCS--DADAIADAAAKVGINLRVVD-ANTVTVSFDETTT- 452 (993)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc-CCccCCCCCcCeEEEecC--CHHHHHHHHHHCCCeeEEec-CCeEEEEeeccCC-
Confidence 377899999999999999999885 899998887889999875 35789999999999877654 3468999987554
Q ss_pred hhHHHHHHHHHH
Q psy10208 81 PGVADKFISDVR 92 (143)
Q Consensus 81 ~~~~~~fl~Dl~ 92 (143)
++.++.|++-|.
T Consensus 453 ~edId~L~~~l~ 464 (993)
T PLN02414 453 LEDVDKLFKVFA 464 (993)
T ss_pred HHHHHHHHHHHc
Confidence 677888887665
No 57
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=96.69 E-value=0.024 Score=46.88 Aligned_cols=92 Identities=7% Similarity=-0.029 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCee-EeccC--ce-eEEEEecCCCCH-HHHHHHHhhcCceecCCCC-CCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLF-IFGTP--AT-SVIALGSDVFHI-YRLSSGLNKRGWNTNSLQF-PVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~-vlg~p--~l-~vVaf~~~~~~i-~~l~d~L~~rGW~v~~~~~-P~~ihi~v~ 75 (143)
|..++.++..+.++++.++|+++||+. ...+| .. ++++|..++..+ .++.+.+.++|-+.+.... +..+|+++.
T Consensus 256 g~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~ 335 (355)
T cd00611 256 GVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSVGGIRASIY 335 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCcccCeEEEEcc
Confidence 688999999999999999999999874 22222 34 569999776411 4444567779987555433 567999997
Q ss_pred ecccChhHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREE 94 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~a 94 (143)
. ..+.+.++.|++-|++.
T Consensus 336 ~-~nt~edi~~l~~al~~~ 353 (355)
T cd00611 336 N-ALSLEGVQALADFMKEF 353 (355)
T ss_pred C-CCCHHHHHHHHHHHHHH
Confidence 5 44578899998877764
No 58
>PRK05367 glycine dehydrogenase; Provisional
Probab=96.56 E-value=0.03 Score=52.60 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEec--c--Cc--eeEEEEec-C---CCCHHHHHHHHhhcCceecCCCCC--C
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFG--T--PA--TSVIALGS-D---VFHIYRLSSGLNKRGWNTNSLQFP--V 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg--~--p~--l~vVaf~~-~---~~~i~~l~d~L~~rGW~v~~~~~P--~ 68 (143)
+|++++++.++.+|+|++++|++. +++.. . +. -.++.|.. + +.+.-+++++|.+.|.+.+....| .
T Consensus 770 ~Glr~~a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~ 847 (954)
T PRK05367 770 EGLRQATEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAG 847 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCC
Confidence 589999999999999999999874 44432 1 22 24444431 1 356789999999999999885554 4
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+.|+++-. .+.+.+|+|++-|+.+.+++.+
T Consensus 848 ~l~i~ptE~-~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 848 TLMVEPTES-ESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred EEEEEeeec-CCHHHHHHHHHHHHHHHHHHHH
Confidence 567777653 3478999999999888888776
No 59
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=96.53 E-value=0.03 Score=45.38 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC----CCeeeEEEEecc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF----PVGIHICITHMH 78 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~----P~~ihi~v~~~h 78 (143)
+.+..+...+.++.+.+.|++++|+++. .+..+.+.|..+. +-.++.+.|.++|+.+..... +..+|+++.
T Consensus 259 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~-~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~--- 333 (346)
T TIGR01141 259 IEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR-DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG--- 333 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC-CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---
Confidence 4566777888899999999999899864 3445677776655 778899999999998865432 567888754
Q ss_pred cChhHHHHHHHHH
Q psy10208 79 TQPGVADKFISDV 91 (143)
Q Consensus 79 ~~~~~~~~fl~Dl 91 (143)
+++.+++|++.|
T Consensus 334 -~~~~i~~~~~~l 345 (346)
T TIGR01141 334 -TREENDRFLAAL 345 (346)
T ss_pred -CHHHHHHHHHHh
Confidence 346777777655
No 60
>KOG0628|consensus
Probab=96.52 E-value=0.036 Score=48.12 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCH--HHHHHHHhhcCc-eecCCCCC--CeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHI--YRLSSGLNKRGW-NTNSLQFP--VGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i--~~l~d~L~~rGW-~v~~~~~P--~~ihi~v~ 75 (143)
+|.++.+++-.+.++.+..-+.+-+-||+..+..+.+|||+.++-|- -.|..+++.+|= ++.....- --+|++|.
T Consensus 370 e~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~ 449 (511)
T KOG0628|consen 370 ENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVC 449 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEec
Confidence 46778888889999999999999999999999999999999875443 467788888774 33332222 24799999
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.+.++.++++.=.+-+.++.+.+...
T Consensus 450 s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 450 SPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888888886654
No 61
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=96.51 E-value=0.025 Score=47.16 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHh-hcCceecCCCC---C---CeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLN-KRGWNTNSLQF---P---VGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~-~rGW~v~~~~~---P---~~ihi~v~~~ 77 (143)
+.++..+.++++.++|+++ |+.++.+ ..+++.+.... .+..++.++|. ++|..+..... | ..+|++++..
T Consensus 300 ~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~ 377 (402)
T TIGR01821 300 LRRAHQENVKRLKNLLEAL-GIPVIPN-PSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPA 377 (402)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCCC-CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCC
Confidence 3445567889999999998 7887653 45566654332 23467888886 56988866432 2 3588888765
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+ ++.+++|++-|+++++++
T Consensus 378 ~t-~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 378 HT-DKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CC-HHHHHHHHHHHHHHHHHc
Confidence 55 689999999999987664
No 62
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=96.50 E-value=0.024 Score=45.81 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----ceeEEEEecC---CCCHHHHHHHHhhcCceecC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-----ATSVIALGSD---VFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----~l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~ 63 (143)
+.++.++..++++++.++|++++|+++++.+ ..++++|..+ ..+-.++.+.|+++|..+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~ 298 (352)
T cd00616 230 LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRV 298 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeee
Confidence 4456677788999999999999999998753 3467888765 57889999999999986553
No 63
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=96.47 E-value=0.035 Score=47.96 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=79.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----eeEEEEe----cCCCCHHHHHHHHhhcCceecCCCCCCeee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----TSVIALG----SDVFHIYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----l~vVaf~----~~~~~i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
+|-+++.+.-+=+|.||+++|+. .|+++-.+. -+|+.-+ ..++...|++.+|-..|+|-|+..+|.-++
T Consensus 341 ~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~ 418 (496)
T COG1003 341 DGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVA 418 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCccccc
Confidence 57889999999999999999997 577765543 2455444 237899999999999999999999995554
Q ss_pred --EEEEeccc-ChhHHHHHHHHHHHHHHHHHcCCCC
Q psy10208 72 --ICITHMHT-QPGVADKFISDVREELAIIMQNPGL 104 (143)
Q Consensus 72 --i~v~~~h~-~~~~~~~fl~Dl~~ai~~~~~~p~~ 104 (143)
++|-|--+ +.+-+|+|++-|.++.++.++.|..
T Consensus 419 ~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~~~ 454 (496)
T COG1003 419 GTLMIEPTESESKEELDRFIDAMIAIREEADAVPAG 454 (496)
T ss_pred cceeecCCCCCCHHHHHHHHHHHHHHHHHHHhccCC
Confidence 55544222 3577999999999999999998743
No 64
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=96.44 E-value=0.042 Score=43.65 Aligned_cols=88 Identities=7% Similarity=-0.070 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC-CHHHHHHHHhhcCceecCCC-----CCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF-HIYRLSSGLNKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~-~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
++.+..+.+.+.++++.+.|++++...+...+....+.|..... +...+.+.|.+.|..+.... .+..+|+++.
T Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~ 335 (350)
T cd00609 256 HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFA 335 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEee
Confidence 57788889999999999999998665543334445555665443 55577888888898887764 4567899887
Q ss_pred ecccChhHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVR 92 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~ 92 (143)
.. .+.++.|++-|+
T Consensus 336 ~~---~~~i~~~~~al~ 349 (350)
T cd00609 336 TP---EEELEEALERLA 349 (350)
T ss_pred CC---HHHHHHHHHHhh
Confidence 64 467777766543
No 65
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=96.37 E-value=0.071 Score=44.42 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCC---------HHHHHHHHhhcCceecCCCCCCeeeEEEEe
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFH---------IYRLSSGLNKRGWNTNSLQFPVGIHICITH 76 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~---------i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~ 76 (143)
++..+.+++++++|++++||+++++ ...|+++|....++ -+.+.+.|+++|=..... ....++.+.+.
T Consensus 283 ~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~-~~~~i~ri~~~ 361 (387)
T PRK09331 283 DEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP-GATKEFKLSTY 361 (387)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEcc-CCceEEEEEec
Confidence 3456789999999999999999964 34667777644321 245889999998763221 12223333333
Q ss_pred cccChhHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.| +++.++.+++=|+++.++
T Consensus 362 g~-t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 362 GL-TWEQVEYVADAFKEIAEK 381 (387)
T ss_pred cC-CHHHHHHHHHHHHHHHHh
Confidence 44 468888888888877554
No 66
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=96.35 E-value=0.026 Score=47.23 Aligned_cols=88 Identities=14% Similarity=0.218 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhh-cCceecCCCC---C---CeeeEEEEeccc
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNK-RGWNTNSLQF---P---VGIHICITHMHT 79 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~-rGW~v~~~~~---P---~~ihi~v~~~h~ 79 (143)
++..+.++++.++|+++ |++++ .+..+++.+...+ .+..++.++|.+ +|+.+..... | ..+|+++...|+
T Consensus 302 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t 379 (406)
T PRK13393 302 ERHQDRVARLRARLDKA-GIPHL-PNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHT 379 (406)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcC-CCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCC
Confidence 34567788999999987 77765 3445555554322 345678888887 5999876432 3 347888865454
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
++.+++|++-|+++++.+
T Consensus 380 -~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 380 -DADIEHLVQALSEIWARL 397 (406)
T ss_pred -HHHHHHHHHHHHHHHHhc
Confidence 688999999998886553
No 67
>PRK05968 hypothetical protein; Provisional
Probab=96.35 E-value=0.03 Score=47.04 Aligned_cols=91 Identities=10% Similarity=0.088 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc------------eeEEEEecC-CCCHHHHHHHHhhcC--ceecCCC---
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA------------TSVIALGSD-VFHIYRLSSGLNKRG--WNTNSLQ--- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~------------l~vVaf~~~-~~~i~~l~d~L~~rG--W~v~~~~--- 65 (143)
....++-.++++++++.|++.|+++.+..|. .++|+|..+ ..+..++.+.|+..+ +.+....
T Consensus 259 ~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv 338 (389)
T PRK05968 259 PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLV 338 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCcee
Confidence 4566777888999999999999998887663 249999875 556788889987644 2211110
Q ss_pred --------------------C-CCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 66 --------------------F-PVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 66 --------------------~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
. +.-+|++|-- +..+.+++||+.+++.++
T Consensus 339 ~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl-----E~~~dl~~dl~~al~~~~ 388 (389)
T PRK05968 339 VPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL-----EGTEALWADLEQALAAAS 388 (389)
T ss_pred eeCcccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHHhh
Confidence 1 1235666642 789999999999998654
No 68
>PRK06225 aspartate aminotransferase; Provisional
Probab=96.34 E-value=0.085 Score=43.56 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhCCCeeEecc-CceeEEEEec--CCCCHHHHHHHHhhcCceecCCC------CCCeeeEEEEecccCh
Q psy10208 11 IETVKYIEKELRSMDGLFIFGT-PATSVIALGS--DVFHIYRLSSGLNKRGWNTNSLQ------FPVGIHICITHMHTQP 81 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~~------~P~~ihi~v~~~h~~~ 81 (143)
-+..+.+.+.|++++|+.+... +..+.+.+.. ..+|..++.++|.++|+.+.... .+..+|+++.. +.
T Consensus 284 ~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~---~~ 360 (380)
T PRK06225 284 FKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI---PR 360 (380)
T ss_pred HHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC---CH
Confidence 3446667888888878654322 3444544443 24688899999999999876531 23468888753 35
Q ss_pred hHHHHHHHHHHHHHHHHHc
Q psy10208 82 GVADKFISDVREELAIIMQ 100 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.++++++.|+++++.++.
T Consensus 361 e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 361 EQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 8999999999999998874
No 69
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=96.29 E-value=0.06 Score=44.23 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCC---Ce-eeEEEEe-cc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFP---VG-IHICITH-MH 78 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P---~~-ihi~v~~-~h 78 (143)
+..+++.+.++++.++|+++ |+++.. |..+++.+.... .+..++.+.|.++|+.++....| .+ .++.+++ .+
T Consensus 285 ~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~ 362 (385)
T TIGR01825 285 ELMERLWDNTRFFKAGLGKL-GYDTGG-SETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAE 362 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCC
Confidence 45677788899999999987 888653 444566655332 23467889998899988654332 12 2343333 24
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAII 98 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+.+.++++++-|+++++++
T Consensus 363 ~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 363 HTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 56789999999999887653
No 70
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=96.24 E-value=0.063 Score=44.90 Aligned_cols=94 Identities=10% Similarity=0.155 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecC--CCCHHHHHHHHhhcCceecCCC---------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQ---------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~---------~P~~ 69 (143)
|+.+..++..++++++.++|+++ |+++..+ +..+++.+..+ .++-.++.+.|+++|..+.... .|.+
T Consensus 280 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~ 358 (416)
T PRK00011 280 EFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSG 358 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCc
Confidence 45677888999999999999997 8887642 34466665543 4567789999999999886321 2445
Q ss_pred eeEEEEec---ccChhHHHHHHHHHHHHHH
Q psy10208 70 IHICITHM---HTQPGVADKFISDVREELA 96 (143)
Q Consensus 70 ihi~v~~~---h~~~~~~~~fl~Dl~~ai~ 96 (143)
+|+..+.. ..+.+.++.+++-|++++.
T Consensus 359 ~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~ 388 (416)
T PRK00011 359 IRIGTPAITTRGFKEAEMKEIAELIADVLD 388 (416)
T ss_pred eEecCHHHhhcCcCHHHHHHHHHHHHHHHh
Confidence 77744321 1235778888777776644
No 71
>PLN02955 8-amino-7-oxononanoate synthase
Probab=96.23 E-value=0.026 Score=49.17 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cCCCCHHHHHHHHhhcCceecCCCCC---Ce---eeEEEEecc
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SDVFHIYRLSSGLNKRGWNTNSLQFP---VG---IHICITHMH 78 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~~~~i~~l~d~L~~rGW~v~~~~~P---~~---ihi~v~~~h 78 (143)
..+++.++.+++.+. . |+.+ + .||+.+. .+......++++|.++|+++++...| .+ +||+++..|
T Consensus 372 ~r~~L~~n~~~fr~~---~-G~~~-~---sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~H 443 (476)
T PLN02955 372 RRKAIWERVKEFKAL---S-GVDI-S---SPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAH 443 (476)
T ss_pred HHHHHHHHHHHHHHh---c-CCCC-C---CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCC
Confidence 345667777777763 2 5553 3 4455443 23445678899999999999875543 33 899999988
Q ss_pred cChhHHHHHHHHHHHHHHHHHc
Q psy10208 79 TQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+ .+.++.+++-|.++.+.+..
T Consensus 444 t-~edId~lv~~L~~~~~~~~~ 464 (476)
T PLN02955 444 T-TEDVKKLITALSSCLDFDNT 464 (476)
T ss_pred C-HHHHHHHHHHHHHHHhhhcc
Confidence 7 57899999999888665543
No 72
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=96.19 E-value=0.049 Score=44.94 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCC------CeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFP------VGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~~ 76 (143)
.+..+++.+.++++.++|+++ |+++.+ |..+++.|...+ .+..++.+.|.++|-.+.....| ..+|+++..
T Consensus 292 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~ 369 (393)
T TIGR01822 292 NELRDRLWANTRYFRERMEAA-GFDIKP-ADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISA 369 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECC
Confidence 345667788889999999887 887653 344566665432 45578999999999777643332 236777776
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.| +.+.++++++-|+++.+++
T Consensus 370 ~~-t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 370 AH-TEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred CC-CHHHHHHHHHHHHHHHHHh
Confidence 44 4688999999888876543
No 73
>PLN02409 serine--glyoxylate aminotransaminase
Probab=96.11 E-value=0.14 Score=43.00 Aligned_cols=96 Identities=10% Similarity=-0.062 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-Cc--e-eEEEEec-CCCCHHHHHHHHh-hcCceecCCCC---CCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PA--T-SVIALGS-DVFHIYRLSSGLN-KRGWNTNSLQF---PVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~--l-~vVaf~~-~~~~i~~l~d~L~-~rGW~v~~~~~---P~~ihi 72 (143)
|..++.++..+.++++.++|+++ |++++++ +. . .+++|.. +.++..++...|. ++|-.+..-+. ...+||
T Consensus 270 G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Ri 348 (401)
T PLN02409 270 GLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRI 348 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEE
Confidence 67778888999999999999998 8999984 22 3 4566765 4678788887775 56766665543 457999
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..|. ..+++.+..+++-|.+++..+.
T Consensus 349 g~~g-~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 349 GHLG-NVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred cCCC-CCCHHHHHHHHHHHHHHHHHcC
Confidence 9987 4567888999999999877655
No 74
>PRK10534 L-threonine aldolase; Provisional
Probab=96.06 E-value=0.13 Score=41.56 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
+..++..+.++++.++|+++ |+++. +|+.+.+-++.++.+-.++.+.|+++|+.+... | .+|++.+. .++++..
T Consensus 247 ~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~~--~-~~rl~~~~-r~t~e~~ 320 (333)
T PRK10534 247 ARLQEDHDNAAWLAEQLREA-GADVM-RQDTNMLFVRVGEEQAAALGEYMRERNVLINAS--P-IVRLVTHL-DVSREQL 320 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccC-CCCceEEEEECCchhHHHHHHHHHHcCeeecCC--c-eEEEEEEe-CCCHHHH
Confidence 34455566778999999998 88754 567887777654335568889999999999643 2 36776653 3467889
Q ss_pred HHHHHHHHHH
Q psy10208 85 DKFISDVREE 94 (143)
Q Consensus 85 ~~fl~Dl~~a 94 (143)
++|++-|++.
T Consensus 321 ~~~~~~l~~~ 330 (333)
T PRK10534 321 AEVVAHWRAF 330 (333)
T ss_pred HHHHHHHHHH
Confidence 9998888754
No 75
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=95.99 E-value=0.1 Score=41.90 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC--CCHHHHHHHHh---hcCceecCCCCCCeeeEEEEe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV--FHIYRLSSGLN---KRGWNTNSLQFPVGIHICITH 76 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~--~~i~~l~d~L~---~rGW~v~~~~~P~~ihi~v~~ 76 (143)
+|.+..+++.+.++++.++|+++ |+. ..++..+++.+..+. .-.-.+.++|. ++|+.+.... +..+|+++..
T Consensus 245 ~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~-~~~lRi~~~~ 321 (338)
T cd06502 245 LWLRRLRHDHEMARRLAEALEEL-GGL-ESEVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWG-EGGVRFVTHW 321 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCC-cccccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecC-CCeEEEEeec
Confidence 57788899999999999999998 554 445777888776532 11124444443 6798876542 2568888864
Q ss_pred cccChhHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVRE 93 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ 93 (143)
+.+++.++++++-+++
T Consensus 322 -~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 322 -DTTEEDVDELLSALKA 337 (338)
T ss_pred -CCCHHHHHHHHHHHhc
Confidence 4456777888776653
No 76
>PRK07908 hypothetical protein; Provisional
Probab=95.99 E-value=0.15 Score=41.65 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----CCCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~h 78 (143)
+++.+...+..+++.+.|+++ |+++...+..+.+.++.++ ...+.+.|+++|..+.... .+..+||++..
T Consensus 256 ~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~~--~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~~-- 330 (349)
T PRK07908 256 AADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVPD--AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVRP-- 330 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECCc--HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeCC--
Confidence 345666777788899999998 8887766667777776654 4688899999999886532 25678998852
Q ss_pred cChhHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREEL 95 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai 95 (143)
++..++|++-|++.+
T Consensus 331 --~~~~~~l~~al~~~~ 345 (349)
T PRK07908 331 --RAEVPVLVQALAEIL 345 (349)
T ss_pred --CccHHHHHHHHHHHH
Confidence 468888888887764
No 77
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=95.91 E-value=0.073 Score=44.54 Aligned_cols=90 Identities=13% Similarity=0.225 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHh-hcCceecCCCCC------CeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLN-KRGWNTNSLQFP------VGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~-~rGW~v~~~~~P------~~ihi~v~~~ 77 (143)
..+++.+.++++.++|+++ |+++. ++..+++.+.. +..+..++.++|. ++|..+.....| ..+|++++..
T Consensus 301 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~ 378 (410)
T PRK13392 301 ERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPL 378 (410)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCC
Confidence 3456778889999999998 88865 45555554432 2234568999985 689988764332 3588988765
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+ .+.++.|++-|+++.+++
T Consensus 379 ~t-~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 379 HD-DEDIDALVAALVAIWDRL 398 (410)
T ss_pred CC-HHHHHHHHHHHHHHHHHc
Confidence 65 578999999998886543
No 78
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=95.90 E-value=0.078 Score=43.26 Aligned_cols=88 Identities=14% Similarity=0.277 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCC---C---CeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQF---P---VGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~---P---~~ihi~v~~ 76 (143)
.++.+++.+.++++.+.|+++ |+++. .|..+.+.|..+. .+-.++.+.|.++|-.+..... | ..+|+++..
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~ 367 (385)
T PRK05958 290 PERRERLAALIARLRAGLRAL-GFQLM-DSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTA 367 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecC
Confidence 356678888899999999987 67754 4677788887643 4556899999999998865322 2 357777743
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
..+.+.++.+++-|+++
T Consensus 368 -~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 368 -AHTEADIDRLLEALAEA 384 (385)
T ss_pred -CCCHHHHHHHHHHHHhc
Confidence 34567888888877654
No 79
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=95.82 E-value=0.13 Score=41.41 Aligned_cols=89 Identities=18% Similarity=0.370 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCC------CCeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQF------PVGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~------P~~ihi~v~~ 76 (143)
.++.+++.+.++++.++|+++ |+++++++...++++... ..+..++.+.|.++|=.+..... ...+|+++..
T Consensus 253 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~ 331 (349)
T cd06454 253 PERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSA 331 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeC
Confidence 456778888999999999998 888887765545555432 34567899999998866643211 3468888864
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
+.+.+.++++++-|+++
T Consensus 332 -~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 332 -AHTKEDIDRLLEALKEV 348 (349)
T ss_pred -CCCHHHHHHHHHHHHHh
Confidence 45567888888877653
No 80
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=95.81 E-value=0.014 Score=52.19 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhC------CCeeE--eccCceeEEEEec
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSM------DGLFI--FGTPATSVIALGS 42 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i------~g~~v--lg~p~l~vVaf~~ 42 (143)
+||.++.++++++|+++.+.|+++ +.|++ +.+|++++|||+-
T Consensus 452 ~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~ 501 (608)
T TIGR03811 452 TGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVF 501 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEE
Confidence 599999999999999999999984 55776 7889999999984
No 81
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=95.73 E-value=0.18 Score=41.41 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVAD 85 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~ 85 (143)
..+.+.+..+++.+.|+++ |+++... +.+.|-..+ +..++.+.|.++|..+-....+..+||++.. +++..+
T Consensus 250 ~~~~~~~~r~~l~~~L~~~-g~~~~~~---~~f~~~~~~-~~~~l~~~l~~~GI~vr~~~~~~~lRisi~~---~~~e~~ 321 (339)
T PRK06959 250 MRERLAADGARLAALLRAH-GFAVHAT---PLFSWTDDP-RAAALHAALARRGIWTRYFAPPPSVRFGLPA---DEAEWQ 321 (339)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCccCc---ceEEEEeCC-CHHHHHHHHHhCCeEEEECCCCCeEEEECCC---CHHHHH
Confidence 3455666788899999998 7776532 233332212 5678999999999999766666788888742 235788
Q ss_pred HHHHHHHHHHHHHHc
Q psy10208 86 KFISDVREELAIIMQ 100 (143)
Q Consensus 86 ~fl~Dl~~ai~~~~~ 100 (143)
.|++-|++.++.+..
T Consensus 322 ~l~~al~~~~~~~~~ 336 (339)
T PRK06959 322 RLEDALAECVPTLAA 336 (339)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999888877764
No 82
>PRK12566 glycine dehydrogenase; Provisional
Probab=95.70 E-value=0.13 Score=48.25 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC------ceeEEEEe-c---CCCCHHHHHHHHhhcCceecCCCC--CCeee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP------ATSVIALG-S---DVFHIYRLSSGLNKRGWNTNSLQF--PVGIH 71 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------~l~vVaf~-~---~~~~i~~l~d~L~~rGW~v~~~~~--P~~ih 71 (143)
++.++.++.+++|++++|++ ++.+..+| .-.++.+. . .+.+..+++++|.++|.+.+.... +..++
T Consensus 774 k~aa~~ailnAnYla~rL~~--~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~Lm 851 (954)
T PRK12566 774 ADASEVAILSANYLANQLGG--AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLM 851 (954)
T ss_pred HHHHHHHHHHHHHHHHHhHh--hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEE
Confidence 45566678899999999987 45555443 11233322 1 136778999999999998887544 44678
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++.+-.+. .+.+|+|++-|+.+.+++++
T Consensus 852 IepTE~es-keEIDrf~eAL~~I~~e~~~ 879 (954)
T PRK12566 852 VEPTESES-KAELDRFVEAMLSIRAEIGK 879 (954)
T ss_pred EEeeeeCC-HHHHHHHHHHHHHHHHHHHH
Confidence 88876554 68899999999888877654
No 83
>KOG0629|consensus
Probab=95.68 E-value=0.043 Score=47.39 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=70.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEec-----C------CCC--HH----HHHHHHhhcCcee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGS-----D------VFH--IY----RLSSGLNKRGWNT 61 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~-----~------~~~--i~----~l~d~L~~rGW~v 61 (143)
.||.+.+.+++++|+|+.+.|++-+|++.+.+ |+...|||=- + ..+ +. .+-.+|-++|=..
T Consensus 390 ~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~M 469 (510)
T KOG0629|consen 390 QGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTM 469 (510)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhcccee
Confidence 59999999999999999999999999998765 7877788731 1 111 11 3447788888877
Q ss_pred cCCC----CCCeeeEEEEecccChhHHHHHHHHHHHH
Q psy10208 62 NSLQ----FPVGIHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 62 ~~~~----~P~~ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
-.|| .|.-.|++++++-.+...++=+++.+...
T Consensus 470 i~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 470 IGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred eEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 6665 36667999998877777777777766543
No 84
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=95.50 E-value=0.3 Score=40.16 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
.+..+++.+..+.+.+.|++. |+.+. .|+.+.+.|... .+...+.+.|.++|+.+.....|..+|+++.. .+.
T Consensus 278 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~----~~~ 350 (368)
T PRK03317 278 LASVAALRAERDRVVAWLREL-GLRVA-PSDANFVLFGRF-ADRHAVWQGLLDRGVLIRDVGIPGWLRVTIGT----PEE 350 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEeC-CCCCcEEEEecc-CCHHHHHHHHHHCCEEEEeCCCCCeEEEecCC----HHH
Confidence 344566667777888889887 77654 466666666332 25678899999999999877667788888752 356
Q ss_pred HHHHHHHHHHHHH
Q psy10208 84 ADKFISDVREELA 96 (143)
Q Consensus 84 ~~~fl~Dl~~ai~ 96 (143)
++.|++-|+++++
T Consensus 351 ~~~~~~~l~~~~~ 363 (368)
T PRK03317 351 NDAFLAALAEVLA 363 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888877754
No 85
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=95.49 E-value=0.16 Score=41.73 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC----CCCeeeEEEEecccC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ----FPVGIHICITHMHTQ 80 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~----~P~~ihi~v~~~h~~ 80 (143)
+..+.+.+.++++.+.|++++|++.+.++..+-+-++.. +..++.+.|.++|+.+.... .+..+|+++. +
T Consensus 266 ~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~--~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~----~ 339 (351)
T PRK01688 266 ERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT--ASSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG----T 339 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--CHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC----C
Confidence 344566677889999999998886555666655555543 45789999999999886542 2456777775 2
Q ss_pred hhHHHHHHHHH
Q psy10208 81 PGVADKFISDV 91 (143)
Q Consensus 81 ~~~~~~fl~Dl 91 (143)
++..+.|++-|
T Consensus 340 ~~e~~~l~~al 350 (351)
T PRK01688 340 REECQRVIDAL 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 46777777654
No 86
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=95.43 E-value=0.2 Score=41.84 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--cee---EEEEecCCCCHHHHHHHHhh----cCce-----------ec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATS---VIALGSDVFHIYRLSSGLNK----RGWN-----------TN 62 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~---vVaf~~~~~~i~~l~d~L~~----rGW~-----------v~ 62 (143)
..++.++....++++.++|++++++++++++ ..| +|+|.. .+-.++...|+. .|=+ +.
T Consensus 261 ~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~--~~~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~ 338 (402)
T TIGR02006 261 MAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY--VEGESLIMALKDLAVSSGSACTSASLEPSYVLR 338 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC--cCHHHHHHhcCCEEEechhhcCCCCCCccHHHH
Confidence 4556677888999999999999999998764 232 577763 233355555532 1111 11
Q ss_pred CCCC-----CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SLQF-----PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~~~-----P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.... ...+|+++.. .++.+.+|.|++-|+++++.++.
T Consensus 339 ~lg~~~~~~~~~vR~S~~~-~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 339 ALGINDELAHSSIRFTIGR-FTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred HcCCChhhcCceEEEEecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 1111 2568999975 46689999999999999888764
No 87
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=95.41 E-value=0.35 Score=41.37 Aligned_cols=98 Identities=14% Similarity=0.263 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCC---------CCCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL---------QFPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~---------~~P~~ 69 (143)
||++-+++++++|+.|++.+.+. ||++++ |.++-+|-+++++++--+..+.|.+-|-.++.- ..|.+
T Consensus 281 ~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSG 359 (413)
T COG0112 281 EFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSG 359 (413)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCcc
Confidence 78999999999999999999995 999995 467777777766777788888888888777653 23678
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
|||-. +..|++++=+.=.+.+.+.+..+-.+
T Consensus 360 IRiGt-pa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 360 IRIGT-PAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred ceecc-HHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 89855 45666555444444444444444444
No 88
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=95.33 E-value=0.17 Score=42.02 Aligned_cols=92 Identities=9% Similarity=0.090 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
..+++.+..+++.++|+++ ++.++++ ...+++.+..+.-+...+.++|.++|..+... .+..+|++....+ +++.
T Consensus 304 ~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~p~~~~-t~~~ 380 (398)
T PRK03244 304 LLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAPVAKAVEAAAREAGFLVNAV-APDVIRLAPPLII-TDAQ 380 (398)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEeccHHHHHHHHHHHCCeEEeec-CCCEEEEECCCcC-CHHH
Confidence 3456666788899999987 3433332 12334444433224567889999999888653 3567888775434 5789
Q ss_pred HHHHHHHHHHHHHHHHc
Q psy10208 84 ADKFISDVREELAIIMQ 100 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~~~~ 100 (143)
++.+++-|++++..++.
T Consensus 381 i~~~~~~l~~~l~~~~~ 397 (398)
T PRK03244 381 VDAFVAALPAILDAAAA 397 (398)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999887653
No 89
>PRK06108 aspartate aminotransferase; Provisional
Probab=95.33 E-value=0.44 Score=39.05 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-CCCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-VFHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-~~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
++..+++.+..+.+.+.|++++|+++.. |+-..+.| ..+ ..+..++++.| +++|..+.... .+..+|+++.
T Consensus 285 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~ 363 (382)
T PRK06108 285 AELVARLRRSRDHLVDALRALPGVEVAK-PDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFA 363 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec
Confidence 4556677778888999999988888654 54444443 443 34677899987 56898874421 2456888887
Q ss_pred ecccChhHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai 95 (143)
. +.+.+++.++.|++++
T Consensus 364 ~---~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 364 R---DPARLDEAVERLRRFL 380 (382)
T ss_pred C---CHHHHHHHHHHHHHHH
Confidence 5 4577777787777654
No 90
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=95.27 E-value=0.23 Score=41.27 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhCCCeeEeccC-------ceeEEEEec--CCCCHHHHHHHHhhcCceecCC--CCCC-eeeEEEEe
Q psy10208 9 SIIETVKYIEKELRSMDGLFIFGTP-------ATSVIALGS--DVFHIYRLSSGLNKRGWNTNSL--QFPV-GIHICITH 76 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~i~g~~vlg~p-------~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~--~~P~-~ihi~v~~ 76 (143)
+..+.+.++.++|++++|+++...+ ..+.|.|.. .+++-.++++.|+++|=.+.+- ..+. .+++...
T Consensus 267 ~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~- 345 (363)
T TIGR01437 267 EMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPR- 345 (363)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEee-
Confidence 3445677899999999999988532 135677876 3678899999999888444332 2233 3444443
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
..+++.++.+++-|+++
T Consensus 346 -~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 346 -SVTGGQLDIIVERIREI 362 (363)
T ss_pred -cCCHHHHHHHHHHHHHh
Confidence 45567788887777664
No 91
>PLN02724 Molybdenum cofactor sulfurase
Probab=95.27 E-value=0.21 Score=46.07 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCC------CeeEeccC--------ceeEEEEecCCCC-----HHHHHHHHhhcCceec
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMD------GLFIFGTP--------ATSVIALGSDVFH-----IYRLSSGLNKRGWNTN 62 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~------g~~vlg~p--------~l~vVaf~~~~~~-----i~~l~d~L~~rGW~v~ 62 (143)
|..++.+.+.+.++++.++|++++ +++++|.+ ..|+|+|...+.+ ..+++..+.++|=.+-
T Consensus 337 g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR 416 (805)
T PLN02724 337 TISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLR 416 (805)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEe
Confidence 667888999999999999999997 58999853 5799999865433 3445544455665552
Q ss_pred CC-------------------------------------CCC-CeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 63 SL-------------------------------------QFP-VGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 63 ~~-------------------------------------~~P-~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+- ..| ..+|+++..-+ +.+.++.|++=|++..
T Consensus 417 ~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~yn-t~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 417 TGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMS-TFEDCQKFIDFIISSF 486 (805)
T ss_pred eccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccC-CHHHHHHHHHHHHHHh
Confidence 21 114 56888887644 4688999998888874
No 92
>PLN02452 phosphoserine transaminase
Probab=95.25 E-value=0.27 Score=41.26 Aligned_cols=91 Identities=8% Similarity=0.068 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEe-ccC---ceeEEEEecCCC-CHHHHHHHHhhcCceecC-CCCCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIF-GTP---ATSVIALGSDVF-HIYRLSSGLNKRGWNTNS-LQFPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vl-g~p---~l~vVaf~~~~~-~i~~l~d~L~~rGW~v~~-~~~P~~ihi~v~ 75 (143)
|..++.++..+.+++|.++|++++||... .+| ..++|+|+.++. +..++.+.++++|-..-. +..-.++|+++.
T Consensus 263 Gl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~y 342 (365)
T PLN02452 263 GLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIY 342 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCccccCceEEECc
Confidence 78889999999999999999999888322 222 346899997543 445788999999986544 444457999998
Q ss_pred ecccChhHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVRE 93 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ 93 (143)
+.. ..+.++.|++-+++
T Consensus 343 na~-~~~~v~~L~~~m~~ 359 (365)
T PLN02452 343 NAM-PLAGVEKLVAFMKD 359 (365)
T ss_pred CCC-CHHHHHHHHHHHHH
Confidence 644 45666666655544
No 93
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=95.20 E-value=0.25 Score=40.82 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCC--CeeeEEEEecccChhH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFP--VGIHICITHMHTQPGV 83 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P--~~ihi~v~~~h~~~~~ 83 (143)
..+++.+.++++.++++.... .+..| |..+..+-..+.+.|.++|..+.....| +.+|+++...| +++.
T Consensus 266 ~~~~l~~l~~~l~~~l~~~~~-----~~~~~---i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~-t~ed 336 (370)
T PRK05937 266 ARKQLFRLKEYFAQKFSSAAP-----GCVQP---IFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFN-TEDE 336 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCC-----CCEEE---EEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCC-CHHH
Confidence 345566667777776654210 11123 3334444568899999999988754333 46999997644 5789
Q ss_pred HHHHHHHHHHHHHHHHcC
Q psy10208 84 ADKFISDVREELAIIMQN 101 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~~~~~ 101 (143)
++.|++-|+++++.+.++
T Consensus 337 id~l~~~L~~~~~~~~~~ 354 (370)
T PRK05937 337 VDILVSVLATYLEKYQKN 354 (370)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999998887665
No 94
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=95.13 E-value=0.28 Score=40.25 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCC------CCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQF------PVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~------P~~ihi~v~~~ 77 (143)
+..++..+.++++.+.|+++ |+++.. |..+.+.+... ..+-.++.++|.++|..+..... +..+|+++...
T Consensus 297 ~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~ 374 (397)
T PRK06939 297 ELRDRLWENARYFREGMTAA-GFTLGP-GEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAA 374 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCC
Confidence 44566777888899999987 677653 44445544432 24557899999999988764322 23477776543
Q ss_pred ccChhHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAI 97 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+ +.+.++++++-|+++++.
T Consensus 375 ~-~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 375 H-TKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred C-CHHHHHHHHHHHHHHHHH
Confidence 3 468899999988887654
No 95
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=95.13 E-value=0.39 Score=39.22 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEeccc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHT 79 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~ 79 (143)
.++.+...+..+.+.+.|++. |+.+. .+..+.+.+.. +..+-.++++.|.++|..+.... .|..+|+++.
T Consensus 275 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---- 348 (367)
T PRK02731 275 EKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---- 348 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC----
Confidence 344455556677788888888 77765 45667777776 35688899999999998886643 2456888875
Q ss_pred ChhHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELA 96 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~ 96 (143)
+.+-++.|++-|+++++
T Consensus 349 ~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 349 TEEENRRFLAALKEFLA 365 (367)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 23677888888877653
No 96
>KOG1359|consensus
Probab=95.10 E-value=0.22 Score=41.46 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCC---CCe---eeEEEEe
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF---PVG---IHICITH 76 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~---P~~---ihi~v~~ 76 (143)
+..+..-.+++++++..+.- ||.+.|. |..||+- ...+ -....+|.|-++|.+|-.... |++ +|+.++.
T Consensus 316 ~~i~~~~a~~qrfr~~me~a-GftIsg~~hPI~pv~l-Gda~-lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSA 392 (417)
T KOG1359|consen 316 KEIQSRQANTQRFREFMEAA-GFTISGASHPICPVML-GDAR-LASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISA 392 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CceecCCCCCccceec-ccHH-HHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEeh
Confidence 45566677888999998886 9999985 6667653 2211 234778999999999866544 443 7888888
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.|+ ++.+|++++-+.++-...
T Consensus 393 aHt-~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 393 AHT-EEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred hcC-HHHHHHHHHHHHHHHHhh
Confidence 887 478888888777765544
No 97
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=95.08 E-value=0.36 Score=39.38 Aligned_cols=85 Identities=14% Similarity=0.282 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----CCCeeeEEEEec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHM 77 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~ 77 (143)
+.+..+++.+.++++.+.|++++|+.+. .+..+.+.|+.+ +...+.+.|.++|+.+.... .+..+|+++..
T Consensus 266 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~- 341 (356)
T PRK04870 266 LDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP--DAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVGT- 341 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCCC-
Confidence 4456677778888899999999898754 445556666654 56788999999999885432 24568888763
Q ss_pred ccChhHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREE 94 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~a 94 (143)
.+..+.|++-|+++
T Consensus 342 ---~~~~~~l~~al~~~ 355 (356)
T PRK04870 342 ---PEENAQFLAALKAA 355 (356)
T ss_pred ---HHHHHHHHHHHHHh
Confidence 36788888777654
No 98
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=94.95 E-value=0.35 Score=40.03 Aligned_cols=92 Identities=13% Similarity=0.208 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeEEEEecC--CCCHHHHHHHHhhcCceecCCC---------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQ---------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~---------~P~~ 69 (143)
++.+..+++.+.++++.+.|++. |+.++..| ..+.+.+..+ ..+...+.+.|.++|=.+.... .+.+
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~ 354 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSG 354 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCe
Confidence 45677788999999999999998 89887543 4555555543 4556677788898897775321 2346
Q ss_pred eeEEEEecc---cChhHHHHHHHHHHHH
Q psy10208 70 IHICITHMH---TQPGVADKFISDVREE 94 (143)
Q Consensus 70 ihi~v~~~h---~~~~~~~~fl~Dl~~a 94 (143)
+|++.+..+ .+.+.++.+++-|+++
T Consensus 355 lRi~~~~~~~~~~~~~di~~~~~~l~~~ 382 (402)
T cd00378 355 IRIGTPAMTTRGMGEEEMEEIADFIARA 382 (402)
T ss_pred eEecCHHHHHhCCCHHHHHHHHHHHHHH
Confidence 888776533 1235556665555554
No 99
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=94.86 E-value=0.23 Score=39.95 Aligned_cols=84 Identities=12% Similarity=0.279 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCC------CCCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQ------FPVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~------~P~~ihi~v~~~ 77 (143)
+..+++.+..+++.++|+++ ++++. .+..+.+.|..+. .+-.++.++|.++|..+.... .+..+|+++...
T Consensus 269 ~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~ 346 (360)
T TIGR00858 269 WRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAA 346 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCC
Confidence 45677888899999999997 67765 4556677776543 456789999999998885321 123688888753
Q ss_pred ccChhHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDV 91 (143)
Q Consensus 78 h~~~~~~~~fl~Dl 91 (143)
+ +.+.++.|++-|
T Consensus 347 ~-~~~~i~~~l~~l 359 (360)
T TIGR00858 347 H-TPGDIDRLAEAL 359 (360)
T ss_pred C-CHHHHHHHHHhh
Confidence 3 356777777644
No 100
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=94.79 E-value=0.45 Score=40.56 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCeeEeccC--ce-eEEEEecCCCCHHHHHHHHhhcCceecCCC---------------
Q psy10208 5 NTTRSIIETVKYIEKELRSM-DGLFIFGTP--AT-SVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------------- 65 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i-~g~~vlg~p--~l-~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------------- 65 (143)
....++.....+|.++|.+. |++.+-|++ .+ +++.|+-+++.--.+.-.|...|-.+++-.
T Consensus 260 ~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~A 339 (386)
T COG1104 260 EENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRA 339 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHH
Confidence 44566778889999999865 999999874 23 355566577777788888888999887741
Q ss_pred -------CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 66 -------FPVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 66 -------~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
...++|+++.+ .++++.++.|++-++++++.++..
T Consensus 340 mG~~~e~a~~siR~S~g~-~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 340 MGISEELAHGSIRFSLGR-FTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred cCCChHHhCccEEEEcCC-CCCHHHHHHHHHHHHHHHHHHhhh
Confidence 13568999997 556899999999999999999874
No 101
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=94.72 E-value=0.52 Score=38.95 Aligned_cols=89 Identities=15% Similarity=0.224 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
|.+..++..+..+.+.+.|++++++.+. .+..+-+-++.+ ..+..++.+.|.++|..+.. .+..+||++.. .
T Consensus 283 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~--~~~~lRls~~~----~ 355 (374)
T PRK02610 283 LLAAIPEILQERDRLYQALQELPQLRVW-PSAANFLYLRLSQDAALAALHQALKAQGTLVRH--TGGGLRITIGT----P 355 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEeC-CCcceEEEEeCCCCCCHHHHHHHHHHCCEEEEe--CCCeEEEeCCC----H
Confidence 4556677777788888899988888754 333333334433 46788999999999998863 35678998863 2
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELAII 98 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~ 98 (143)
+..+++++-|++++..+
T Consensus 356 ~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 356 EENQRTLERLQAALTQL 372 (374)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34588888887776544
No 102
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=94.68 E-value=0.073 Score=45.88 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|.+++++.++.+|+|++++|+++.++.+-+.+-.--|....+...+.++.++....|-.+.. ....++-+|++-.++
T Consensus 341 ~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~~~~~~l~~~~~~~gl~~~~-~~~~~~li~~TE~~t- 418 (429)
T PF02347_consen 341 EGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKDKEVEELLKRGIEGGLNLRY-PDDGALLICVTETRT- 418 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS-HHHHHHHHTT----EEEGG-G-SSEEEEE--TT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCcHHHHHHHHHHHhcCCCccc-cCCCeEEEEccCCCC-
Confidence 589999999999999999999998555544434333333333334455577777777733322 223467788887665
Q ss_pred hhHHHHHHH
Q psy10208 81 PGVADKFIS 89 (143)
Q Consensus 81 ~~~~~~fl~ 89 (143)
++.+|.|++
T Consensus 419 ~edid~lv~ 427 (429)
T PF02347_consen 419 KEDIDRLVE 427 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 577888775
No 103
>PRK14012 cysteine desulfurase; Provisional
Probab=94.31 E-value=0.9 Score=37.88 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEecc-----CceeEEEEecCCCCHHHHHHHHhhcC----ceecC----------
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGT-----PATSVIALGSDVFHIYRLSSGLNKRG----WNTNS---------- 63 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-----p~l~vVaf~~~~~~i~~l~d~L~~rG----W~v~~---------- 63 (143)
..++.++....++++.++|++++++++.++ |....++|...+ -.++...|++.| -+...
T Consensus 263 ~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~ 340 (404)
T PRK14012 263 MATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE--GESLIMALKDLAVSSGSACTSASLEPSYVLR 340 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC--HHHHHHhCCCeEEEchhhhCCCCCCCCHHHH
Confidence 445667778899999999999999998765 233457776532 235666665422 11100
Q ss_pred -C-----CCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 64 -L-----QFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 64 -~-----~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
. ..+..+|+++.. .++++.++.+++-|+++++.++.
T Consensus 341 ~~~~~~~~~~~~iRls~~~-~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 341 ALGLNDELAHSSIRFSLGR-FTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred HcCCChhhcCceEEEEecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 113568998875 46789999999999999888764
No 104
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=94.31 E-value=0.38 Score=40.68 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCC----CHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVF----HIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~----~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
..+++.+..+++.++|+++.++..+++ ..-.+++|...+- ..-.+...|.++|..+.... ..+|++... ..
T Consensus 328 ~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~lR~~p~l-~~ 404 (423)
T PRK05964 328 VLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLG--NTIYLMPPY-II 404 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecC--CEEEEeCCc-cc
Confidence 456777788889998887754444443 2223444443221 14578899999998886532 345554432 34
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.+|.+++=|+++++++
T Consensus 405 t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 405 TAEELDRITDAIVEVADEL 423 (423)
T ss_pred CHHHHHHHHHHHHHHHhhC
Confidence 5789999999999988763
No 105
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=94.27 E-value=0.21 Score=42.68 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
.|++-+++++++|+.|++.|.+. ||++++. -++-+|-.+..+++-......|.+-|-.++... .|.++
T Consensus 297 ~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGl 375 (399)
T PF00464_consen 297 EFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGL 375 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEE
Confidence 47899999999999999999997 9999964 344445455557888899999999999887532 24689
Q ss_pred eEEEEecccChhHHH
Q psy10208 71 HICITHMHTQPGVAD 85 (143)
Q Consensus 71 hi~v~~~h~~~~~~~ 85 (143)
||-... .|++++-+
T Consensus 376 RlGT~~-lT~rG~~e 389 (399)
T PF00464_consen 376 RLGTPA-LTRRGMKE 389 (399)
T ss_dssp EEESHH-HHHTT--H
T ss_pred EECCHH-HHhCCCCH
Confidence 997653 55555554
No 106
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=94.23 E-value=0.87 Score=37.27 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChhH
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPGV 83 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~ 83 (143)
.+.+.+.++++.+.|++++++++. .|..+-+-++.+ +..++.+.|.++|..+.... .+..+|+++.. .+.
T Consensus 269 ~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~--~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~~----~e~ 341 (354)
T PRK04635 269 VLDLNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFD--DVDAVFKALWDAGIVARAYKDPRLANCIRFSFSN----RAE 341 (354)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeCC----HHH
Confidence 445566678899999999777765 454444444333 45678899999999886543 34578888752 467
Q ss_pred HHHHHHHHHH
Q psy10208 84 ADKFISDVRE 93 (143)
Q Consensus 84 ~~~fl~Dl~~ 93 (143)
.+.|++-|++
T Consensus 342 ~~~l~~al~~ 351 (354)
T PRK04635 342 TDKLIGLIRN 351 (354)
T ss_pred HHHHHHHHHH
Confidence 8888877754
No 107
>PRK05957 aspartate aminotransferase; Provisional
Probab=94.12 E-value=1.4 Score=36.63 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ec-CCCCHHHHHHHHh-hcCceecCCC-C----CCeeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GS-DVFHIYRLSSGLN-KRGWNTNSLQ-F----PVGIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~-~~~~i~~l~d~L~-~rGW~v~~~~-~----P~~ihi~v~ 75 (143)
.+..+.+.+.++.+.+.|++++++..+..|+...+.| +. .++|-.+++++|. ++|+.+.... + ...+|+++.
T Consensus 286 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~ 365 (389)
T PRK05957 286 QQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG 365 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe
Confidence 5556667778888999999988754455676555554 32 3678889999986 5899887642 1 235888885
Q ss_pred ecccChhHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
. .+.+.+++.++-|.+.++.+
T Consensus 366 ~--~~~~~l~~~~~~l~~~~~~~ 386 (389)
T PRK05957 366 A--LQKATAKEGIERLVQGLKTI 386 (389)
T ss_pred c--CCHHHHHHHHHHHHHHHHhh
Confidence 3 23466777777777766553
No 108
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=93.94 E-value=0.88 Score=37.74 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
+..+...+..+++.+.++++ |+++. .|+.+-+-+... +-..+.+.|.++|+.+-. +|.++||++.. .+..
T Consensus 273 ~~~~~~~~~r~~~~~~l~~~-g~~~~-~~~~nf~~~~~~--~~~~~~~~l~~~GI~Vr~--~~~~iRis~~~----~~~~ 342 (366)
T PRK01533 273 EIVRVNTEGLRQYESFCKEN-EIPFY-QSQTNFIFLPVE--NGGEIYEACAHAGFIIRP--FPNGVRITVGT----REQN 342 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccC-CCcCcEEEEeCC--CHHHHHHHHHHCCcEEcc--CCCceEEeCCC----HHHH
Confidence 33455566677777888887 67643 456655545443 456889999999999986 47889998875 3788
Q ss_pred HHHHHHHHHHHHHHHc
Q psy10208 85 DKFISDVREELAIIMQ 100 (143)
Q Consensus 85 ~~fl~Dl~~ai~~~~~ 100 (143)
+.|++-|++.++..+.
T Consensus 343 ~~l~~al~~~~~~~~~ 358 (366)
T PRK01533 343 EGVISVLQQHFENKKR 358 (366)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999877654443
No 109
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=93.92 E-value=1.1 Score=37.01 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC----CCCeeeEEEEecccC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ----FPVGIHICITHMHTQ 80 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~----~P~~ihi~v~~~h~~ 80 (143)
+..+++.+.++.+.+.|++++|+..+..+..+-+-++.+ +..++.+.|.++|+.+.... .+..+||++..
T Consensus 273 ~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~--~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~~---- 346 (364)
T PRK04781 273 RRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD--DAEAAFQALLAAGVVVRDQRAAPRLSDALRITLGT---- 346 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCCC----
Confidence 345556677788999999998875444455444445443 45688899999999886543 24568888763
Q ss_pred hhHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREE 94 (143)
Q Consensus 81 ~~~~~~fl~Dl~~a 94 (143)
.+..+.|++=|++.
T Consensus 347 ~~~~~~l~~al~~~ 360 (364)
T PRK04781 347 PEQNDRVLAALQRT 360 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 35677777766653
No 110
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=93.89 E-value=0.77 Score=37.51 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
.+..+.+.+..+++.+.|+++ |+++. .|+.+-+-+.....+-.++.++|.++|..+.. ++..+||++... +.
T Consensus 252 ~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~--~~~~~Risi~~~----~~ 323 (335)
T PRK14808 252 EERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFIFMEKEEKERLLEHLRAKNIAVRS--FREGVRITIGKR----EE 323 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEEC-CCCCeEEEEeCCCccHHHHHHHHHHCCeEEEE--CCCCeEEecCCH----HH
Confidence 445566677778888999998 77754 46666665555545667899999999998874 457899998764 45
Q ss_pred HHHHHHHHH
Q psy10208 84 ADKFISDVR 92 (143)
Q Consensus 84 ~~~fl~Dl~ 92 (143)
.+.|++-|+
T Consensus 324 ~~~~~~~l~ 332 (335)
T PRK14808 324 NDMILKELE 332 (335)
T ss_pred HHHHHHHHH
Confidence 667776654
No 111
>PRK06767 methionine gamma-lyase; Provisional
Probab=93.87 E-value=0.51 Score=39.50 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------ceeEEEEecCC--CCHHHHHHHHhhcC--ceecCC----C
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTP-----------ATSVIALGSDV--FHIYRLSSGLNKRG--WNTNSL----Q 65 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------~l~vVaf~~~~--~~i~~l~d~L~~rG--W~v~~~----~ 65 (143)
...++..++++++++.|+++|+++.+--| .-.+|+|..++ .+...+.++|+..+ +.+... .
T Consensus 259 ~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~ 338 (386)
T PRK06767 259 VRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQ 338 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCcccc
Confidence 45677889999999999999999976544 23689998753 36778889998654 222111 1
Q ss_pred CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 66 FP--------------------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 66 ~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.| .-+|++|- -|..+.+++||..+++.
T Consensus 339 ~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-----lE~~~dl~~dl~~al~~ 385 (386)
T PRK06767 339 HPATMTHAAIPAELRQEMGIYDNLIRLSVG-----LESWEDIVSDLEQALKK 385 (386)
T ss_pred CCCccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence 11 12455554 37899999999999863
No 112
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=93.77 E-value=0.47 Score=39.22 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-eeEec--cCceeEEEEecCC---------CCHHHHHHHHhhcCceecCCCCCCeeeEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDG-LFIFG--TPATSVIALGSDV---------FHIYRLSSGLNKRGWNTNSLQFPVGIHIC 73 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g-~~vlg--~p~l~vVaf~~~~---------~~i~~l~d~L~~rGW~v~~~~~P~~ihi~ 73 (143)
+.+++.+.++++.++++++.. +.++. .+.-++++|.... .+...+.+.|.++|..+.... +..+|++
T Consensus 314 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~-~~~lR~~ 392 (413)
T cd00610 314 LLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG-GNVIRLL 392 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC-CCEEEEE
Confidence 445666778888888877632 12222 2344566655422 356788999999998887654 5668888
Q ss_pred EEecccChhHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~a 94 (143)
++..|+ ++.++++++-|+++
T Consensus 393 ~~~~~t-~~~i~~~~~~l~~~ 412 (413)
T cd00610 393 PPLIIT-EEEIDEGLDALDEA 412 (413)
T ss_pred CCCcCC-HHHHHHHHHHHHHh
Confidence 876554 67888888888765
No 113
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=93.68 E-value=1.3 Score=36.19 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC----CCCeeeEEEEeccc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ----FPVGIHICITHMHT 79 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~----~P~~ihi~v~~~h~ 79 (143)
.+..+.+.+..+++.+.+++++|+.+. .|..+-+-++.. +...+.+.|.++|..+.... .+..+||++..
T Consensus 262 ~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~--~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~--- 335 (351)
T PRK14807 262 KERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFK--DADYVYQGLLERGILVRDFSKVEGLEGALRITVSS--- 335 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcC--CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCC---
Confidence 455566777788899999988898764 455544434433 46788999999999885532 24568888874
Q ss_pred ChhHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREE 94 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~a 94 (143)
.+..+.|++=|++.
T Consensus 336 -~~~~~~l~~~l~~~ 349 (351)
T PRK14807 336 -CEANDYLINGLKEL 349 (351)
T ss_pred -HHHHHHHHHHHHHh
Confidence 25677887777664
No 114
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=93.59 E-value=0.97 Score=39.08 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCC-CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMD-GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~-g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+|-+++++++...+.+|+++|+++. |++++.+.-+.-+.++.+.--.-.+..+-...|..+...- +..+-++++..++
T Consensus 355 ~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~-~~~~~ia~tEt~t 433 (450)
T COG0403 355 QGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEVAEALLAAAIAGGINLRRVD-ADTVLIALTETTT 433 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecchhHHHHHHHHHHhcCCceeeec-CCceEEEeecccC
Confidence 4889999999999999999999764 7999988777788887654112233444445676665432 3356688887444
Q ss_pred ChhHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREE 94 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~a 94 (143)
++.++.|++-+...
T Consensus 434 -~~~i~~l~~~~~~~ 447 (450)
T COG0403 434 -KEDIDALVAAFGGV 447 (450)
T ss_pred -HHHHHHHHHHHhhh
Confidence 67888888766543
No 115
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=93.54 E-value=1.6 Score=36.25 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCC---CCeeeEEEEeccc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQF---PVGIHICITHMHT 79 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~---P~~ihi~v~~~h~ 79 (143)
++..+.+.+..+++.+.|++++++.+ ..+..+.+-|..+ ..+-.++.+.|.++|..+..... +..+||++..
T Consensus 290 ~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~~--- 365 (380)
T PLN03026 290 EDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVGK--- 365 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecCC---
Confidence 34456667778889999999966654 3455666666654 46778999999999998865432 3468888762
Q ss_pred ChhHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVRE 93 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ 93 (143)
.+..+.|++-|++
T Consensus 366 -~~~~~~l~~al~~ 378 (380)
T PLN03026 366 -PEHTDALMEALKQ 378 (380)
T ss_pred -HHHHHHHHHHHHH
Confidence 3566777766654
No 116
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=93.39 E-value=1.7 Score=35.23 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEEeccc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICITHMHT 79 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~~~h~ 79 (143)
+..+...+..+++.+.|+++ |+++...|..+-+-++.+ +..++.+.|.++|..+.... + +..+||++..
T Consensus 243 ~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~--~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~~--- 316 (332)
T PRK06425 243 HSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP--DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIRR--- 316 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC--CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCC---
Confidence 34455556677888999998 788766676666666554 56789999999998775442 2 3468888864
Q ss_pred ChhHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREEL 95 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai 95 (143)
++..+.|++-|++.+
T Consensus 317 -~~~~~~l~~al~~~~ 331 (332)
T PRK06425 317 -RSFNIKLVNALRNFL 331 (332)
T ss_pred -HHHHHHHHHHHHHHh
Confidence 367888888887653
No 117
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=93.36 E-value=1.4 Score=37.28 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-C---ceeEEEEec--CCC-----C-----HHHHHHHHhhcCceecCCC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-P---ATSVIALGS--DVF-----H-----IYRLSSGLNKRGWNTNSLQ 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p---~l~vVaf~~--~~~-----~-----i~~l~d~L~~rGW~v~~~~ 65 (143)
|-.++-++-.+.++.+++++++++.++++.+ + .-.+++|+. .++ | ..++-..|+++|-.+..-+
T Consensus 260 Gle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~ 339 (374)
T TIGR01365 260 GLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGS 339 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccc
Confidence 5677778888899999999999955888763 2 333455553 223 3 5788999999998887544
Q ss_pred C---CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 66 F---PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 66 ~---P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
. +..+||..|. .++.+.++.+++-|.-+.
T Consensus 340 ~~~~~~~fRIg~~G-~i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 340 YRDAPSGLRIWCGA-TVEKSDLECLCPWLDWAF 371 (374)
T ss_pred cccCCCceEEecCC-cCCHHHHHHHHHHHHHHH
Confidence 3 4568998886 555677777777665543
No 118
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=93.19 E-value=1.3 Score=37.72 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecC-CCCH-HHHHHHHhhcCceecCCCCCC---eeeE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSD-VFHI-YRLSSGLNKRGWNTNSLQFPV---GIHI 72 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~-~~~i-~~l~d~L~~rGW~v~~~~~P~---~ihi 72 (143)
||..++-++=..++++++++++++ ||++++++ .-+|.+|..+ ++|- ......+++.|-.+..-+.|- -+||
T Consensus 261 EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRI 339 (383)
T COG0075 261 EGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRI 339 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEE
Confidence 466777777788999999999999 99999965 3356667764 4552 233344455688888877654 4799
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
-.|- .++...+...+.-|.+++.++..
T Consensus 340 GhMG-~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 340 GHMG-NVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred ecCc-cCCHHHHHHHHHHHHHHHHHcCC
Confidence 8886 77778888888888888877765
No 119
>PRK07582 cystathionine gamma-lyase; Validated
Probab=93.14 E-value=1.4 Score=36.74 Aligned_cols=86 Identities=7% Similarity=0.021 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEecc------C-----------ceeEEEEecCCCCHHHHHHHHhhcCc-----eec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGT------P-----------ATSVIALGSDVFHIYRLSSGLNKRGW-----NTN 62 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~------p-----------~l~vVaf~~~~~~i~~l~d~L~~rGW-----~v~ 62 (143)
..+++..++++.+++.|++.|.++-+.- | --.+|+|..+ +..++...|+..+. .+.
T Consensus 245 ~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--~~~~~~~~~~~l~~~~~~~s~G 322 (366)
T PRK07582 245 LRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--DAAAAERFVAASRLVVAATSFG 322 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--CHHHHHHHHHhCCcceecccCC
Confidence 4567778999999999999998875542 3 2458999875 34455555554432 221
Q ss_pred CC----C--------CC-CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 63 SL----Q--------FP-VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 63 ~~----~--------~P-~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. . .| .-+|++|- . +..+.+++||+++++.
T Consensus 323 ~~~sl~~~~~~~~~~~~~~liR~svG---l--E~~~dli~dl~~al~~ 365 (366)
T PRK07582 323 GVHTSADRRARWGDAVPEGFVRLSCG---I--EDTDDLVADLERALDA 365 (366)
T ss_pred CccchhhhHHHcCCCCCCCeEEEEec---c--CCHHHHHHHHHHHHhh
Confidence 11 0 12 23676664 2 6789999999999865
No 120
>PRK09105 putative aminotransferase; Provisional
Probab=93.04 E-value=1.8 Score=35.88 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCC--CCCCeeeEEEEecccChhHH
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL--QFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~--~~P~~ihi~v~~~h~~~~~~ 84 (143)
.+.+.+..+++.+.|++. |+++. .|+.+.+.+..+ .|-.++.+.|.++|+.+... ..|..+|+++.. ++..
T Consensus 285 ~~~~~~~r~~l~~~L~~~-g~~~~-~~~~~f~~~~~~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~~----~~~~ 357 (370)
T PRK09105 285 RAENAAVREDTIAWLKKK-GYKCT-PSQANCFMVDVK-RPAKAVADAMAKQGVFIGRSWPIWPNWVRVTVGS----EEEM 357 (370)
T ss_pred HHHHHHHHHHHHHHHHHC-CCCcC-CCCCcEEEEeCC-CCHHHHHHHHHHCCcEEecCCCCCCCeEEEEcCC----HHHH
Confidence 345566778888999987 77754 466666656543 46678999999999988322 135678888762 4567
Q ss_pred HHHHHHHHHHH
Q psy10208 85 DKFISDVREEL 95 (143)
Q Consensus 85 ~~fl~Dl~~ai 95 (143)
+.|++-|++.+
T Consensus 358 ~~l~~al~~~~ 368 (370)
T PRK09105 358 AAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHHHh
Confidence 88888777653
No 121
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=92.93 E-value=1.6 Score=35.45 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=43.4
Q ss_pred eeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 27 LFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 27 ~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+++. .+..+.+.+..+..+-.++++.|.++|..+.... + +..+|+++. +.+.+++|++-|++++
T Consensus 292 ~~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~----~~~~~~~l~~~L~~il 360 (361)
T PRK00950 292 FKVY-PSEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG----TFEENERFLEILKEIV 360 (361)
T ss_pred eeEC-CCcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC----CHHHHHHHHHHHHHHh
Confidence 4443 3455666666666788899999999998885422 2 345788875 2356788888777654
No 122
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=92.88 E-value=2.5 Score=34.85 Aligned_cols=90 Identities=19% Similarity=0.148 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec--CCCCHHHHHHHHhhcCceec-CC--CCCCeeeEEEEeccc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS--DVFHIYRLSSGLNKRGWNTN-SL--QFPVGIHICITHMHT 79 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~-~~--~~P~~ihi~v~~~h~ 79 (143)
+..+.+.+..+++.+.|++. |+... .+..+.+-+.. +..+...+.++|.++|..+- .. ..+..+|+++.
T Consensus 274 ~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---- 347 (369)
T PRK08153 274 EVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---- 347 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC----
Confidence 34455556677788888876 66643 34444554443 23456788999999999883 22 12346788775
Q ss_pred ChhHHHHHHHHHHHHHHHHHc
Q psy10208 80 QPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.+..+.|++=|++++...++
T Consensus 348 ~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 348 PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 358899999999988775543
No 123
>PLN02651 cysteine desulfurase
Probab=92.82 E-value=0.68 Score=38.01 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCeeEecc--Cc--e-eEEEEecCCCCHHHHHHHHhh
Q psy10208 4 VNTTRSIIETVKYIEKELRS-MDGLFIFGT--PA--T-SVIALGSDVFHIYRLSSGLNK 56 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~--p~--l-~vVaf~~~~~~i~~l~d~L~~ 56 (143)
.++.+++.+.++++.++|++ ++|++++++ |. . ++++|..++.+-.++...|.+
T Consensus 258 ~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~ 316 (364)
T PLN02651 258 DYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKE 316 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCC
Confidence 56677888899999999985 789999994 33 3 499998888888899999975
No 124
>KOG1357|consensus
Probab=92.57 E-value=0.41 Score=41.74 Aligned_cols=87 Identities=17% Similarity=0.335 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecCCCCHHHHHHHHhhcCcee--cCCCCCC----eeeEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSDVFHIYRLSSGLNKRGWNT--NSLQFPV----GIHICI 74 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~~~~i~~l~d~L~~rGW~v--~~~~~P~----~ihi~v 74 (143)
++..+++.+++++++..+++. ||.+.|+-+ +|+.-+.-.. +-.++++|-+++--+ ..++.++ -.|+|+
T Consensus 404 ~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~k--~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~ 480 (519)
T KOG1357|consen 404 RQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPAK--IVAFSREMLERNIGVVVVGFPATPLLESRARFCL 480 (519)
T ss_pred HHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCccc--ccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhh
Confidence 677888999999999999997 999999744 4444333233 345677777765544 4344433 148999
Q ss_pred EecccChhHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREE 94 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~a 94 (143)
.-.|+ .++.+..++-+.+.
T Consensus 481 Sa~ht-~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 481 SASHT-KEDLDRALEVIDRV 499 (519)
T ss_pred ccccc-HHHHHHHHHHHhhh
Confidence 87776 46777666654443
No 125
>PRK08361 aspartate aminotransferase; Provisional
Probab=92.46 E-value=2.6 Score=34.90 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC--CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEE
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD--VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~--~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
+..+...+..+.+.+.|++++|+++. .|+-+.+.| +.+ .++-.++.+.|. +.|..+.... .+..+|+++.
T Consensus 293 ~~~~~~~~~~~~~~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 371 (391)
T PRK08361 293 EMRKEYNERRKLVLKRLKEMPHIKVF-EPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA 371 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeec-CCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec
Confidence 33444455666788999998887754 455554444 433 467888998885 5799886532 2457899887
Q ss_pred ecccChhHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
. ..+.+++-++.|++.++
T Consensus 372 ~---~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 372 T---SKEKLIEAMERMEKALE 389 (391)
T ss_pred C---CHHHHHHHHHHHHHHHh
Confidence 4 23566666666666553
No 126
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=92.23 E-value=2.7 Score=34.16 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
+..+.+.+..+++.+.|+++ |++..+ ....+.|-... +..++.+.|.++|+.+.....|..+||++.. +.+..
T Consensus 243 ~~~~~~~~~r~~l~~~L~~~-~~~~~~--~~~~f~~~~~~-~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~---~~~~~ 315 (330)
T PRK05664 243 RQRERLLAASQRLAALLRRH-GLTPAG--GCALFQWVRTE-DAAALHEFLARRGILTRLFEQPASLRFGLPA---DEADW 315 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcccC--CcceEEEEecC-CHHHHHHHHHHCCeEEEECCCCCeEEEECCC---CHHHH
Confidence 34455566788899999987 665322 22233332222 5678899999999999876667788998873 22456
Q ss_pred HHHHHHHHHH
Q psy10208 85 DKFISDVREE 94 (143)
Q Consensus 85 ~~fl~Dl~~a 94 (143)
++|++=|++.
T Consensus 316 ~~l~~al~~~ 325 (330)
T PRK05664 316 ARLDQALLAY 325 (330)
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 127
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=92.04 E-value=1.7 Score=37.12 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc-Ch
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT-QP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~-~~ 81 (143)
..+++.+..++|.++|+++.++..+++ -..+++++... ..+.-.+.+.|.++|-.+.... -.+.++|+.+ ++
T Consensus 334 ~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~g----~~l~~~Ppl~it~ 409 (429)
T PRK06173 334 WQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPFG----KLVYIMPPFIISP 409 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEecC----CEEEEeCCccCCH
Confidence 345667788889999987645554544 23334444332 2345688999999997775432 2566777765 68
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELAII 98 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~ 98 (143)
+.++++++-|++++..+
T Consensus 410 ~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 410 DELSQLTSGLLRVLKQE 426 (429)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999998764
No 128
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=91.90 E-value=1.3 Score=36.28 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEe-c--cCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIF-G--TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vl-g--~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
..+++.+.+++++++++++ +.... . .+..+.+.|..+. +..++.++|.++|..+... .+..+|+++...+ +.+
T Consensus 291 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~-~~~~lRi~~~~~~-t~~ 366 (379)
T TIGR00707 291 LLENVKEKGDYFKERLEEL-GKNYPNKEVRGKGLMLGIELEA-PCKDIVKKALEKGLLVNCA-GPKVLRFLPPLII-TKE 366 (379)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhCCCCccccCceEEEEEecC-cHHHHHHHHHHCCcEEeeC-CCCEEEEECCCcC-CHH
Confidence 3455666778888888765 33221 1 1233345554322 3568899999999988753 2456888765434 467
Q ss_pred HHHHHHHHHHHH
Q psy10208 83 VADKFISDVREE 94 (143)
Q Consensus 83 ~~~~fl~Dl~~a 94 (143)
.++++++-|+++
T Consensus 367 ~i~~~~~~l~~~ 378 (379)
T TIGR00707 367 EIDEAVSALEEA 378 (379)
T ss_pred HHHHHHHHHHHh
Confidence 888888888765
No 129
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=91.78 E-value=0.93 Score=36.70 Aligned_cols=84 Identities=12% Similarity=0.134 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhc-CceecCCC---CCCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~v~~~h 78 (143)
.+..+.+.+..+++.+.|++. |+.+...+ .+.+.|.. +..+-.++.++|.++ |..+.... .+..+|+++ . +
T Consensus 275 ~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a-~ 350 (363)
T PF00155_consen 275 EELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-A-S 350 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-G-C
T ss_pred ccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-c-c
Confidence 456777888899999999998 99988766 55565543 322567899999998 98775522 366799998 3 4
Q ss_pred cChhHHHHHHHHH
Q psy10208 79 TQPGVADKFISDV 91 (143)
Q Consensus 79 ~~~~~~~~fl~Dl 91 (143)
.+++.++++++-|
T Consensus 351 ~~~e~~~~~~~~l 363 (363)
T PF00155_consen 351 HSEEDLEEALERL 363 (363)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhC
Confidence 4567787777643
No 130
>PRK06207 aspartate aminotransferase; Provisional
Probab=91.72 E-value=4.7 Score=33.78 Aligned_cols=91 Identities=10% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC--CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD--VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICI 74 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~--~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v 74 (143)
.+..+...+.++.+.+.|++++|+++. .|+-..+.| +.+ ..+..++.++|. +.|..+.... .+..+||++
T Consensus 304 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~ 382 (405)
T PRK06207 304 KDRIARHQAIRDDLLRVLRGVEGVFVR-APQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNF 382 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceec-CCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEe
Confidence 344555666677788889888887754 454333433 333 356788999996 6898876543 245789998
Q ss_pred EecccChhHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. ..+.+++=++-|+++++..
T Consensus 383 ~~---~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 383 SQ---DHAAAVAAAERIAQLIERY 403 (405)
T ss_pred cC---CHHHHHHHHHHHHHHHHHh
Confidence 74 2456666666676666544
No 131
>PRK06836 aspartate aminotransferase; Provisional
Probab=91.65 E-value=4.6 Score=33.58 Aligned_cols=83 Identities=7% Similarity=-0.004 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChhHHH
Q psy10208 10 IIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPGVAD 85 (143)
Q Consensus 10 ~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~~~ 85 (143)
..+..+.+.+.|+++ |+++. .|.-..+.| +.+..|..++.+.|.+.|+.+.... .+..+||++. + .++.++
T Consensus 305 ~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~-~~~~~~ 379 (394)
T PRK06836 305 YKRNRDLLYDGLTEL-GFECV-KPQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--V-DTETIE 379 (394)
T ss_pred HHHHHHHHHHHHHhC-CCEee-cCCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--C-CHHHHH
Confidence 345566777888887 67654 344344444 3334577888999999999886653 3567999987 2 468888
Q ss_pred HHHHHHHHHHHH
Q psy10208 86 KFISDVREELAI 97 (143)
Q Consensus 86 ~fl~Dl~~ai~~ 97 (143)
+.++-|+++++.
T Consensus 380 ~~i~~l~~~l~~ 391 (394)
T PRK06836 380 RSLPAFEKLAKE 391 (394)
T ss_pred HHHHHHHHHHHH
Confidence 888888888753
No 132
>PRK09265 aminotransferase AlaT; Validated
Probab=91.64 E-value=3.6 Score=34.28 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC-----C-CHHHHHHHHhhcCceecCCC-----CCCeeeEEEE
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV-----F-HIYRLSSGLNKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~-----~-~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
+.+.+..+.+.+.|++++|+++. .|+-..+.| +.+. . +...+.+.+.++|+.+.... .+..+|+++.
T Consensus 304 ~~~~~~r~~~~~~L~~~~~~~~~-~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~ 382 (404)
T PRK09265 304 GRLYEQRDRAWELLNAIPGVSCV-KPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL 382 (404)
T ss_pred HHHHHHHHHHHHHHhcCCCCccc-CCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC
Confidence 35666677788889888887654 455444444 3221 1 23346788899999885542 2456888884
Q ss_pred ecccChhHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+.+.+++.++.|++++...
T Consensus 383 ---~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 383 ---PRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred ---CCHHHHHHHHHHHHHHHHHh
Confidence 34578888888888877643
No 133
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=91.50 E-value=1.9 Score=35.93 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEec----cCceeEEEEecCC--CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFG----TPATSVIALGSDV--FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg----~p~l~vVaf~~~~--~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
.++..+.+.++.++|++++ ..+++ ...+..|-|..+. .+..++...|.++|=.+... .+..+|++.+. .++
T Consensus 309 ~~~~~~~~~~~~~~L~~l~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-~~~~lRi~p~l-~~t 385 (401)
T TIGR01885 309 AENAEKLGEIFRDQLKKLP-KPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPT-HGNIIRLAPPL-VIT 385 (401)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEec-CCCEEEEeCCc-cCC
Confidence 3456667889999999883 34433 2333333344332 35678999999999776432 24567776643 445
Q ss_pred hhHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREEL 95 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai 95 (143)
++.++++++-|++++
T Consensus 386 ~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 386 EEQLDEGLEIIKKVI 400 (401)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788999998888765
No 134
>PRK06290 aspartate aminotransferase; Provisional
Probab=91.48 E-value=4 Score=34.40 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-C-------CCHHHHHHHHhhcC-cee-cCCCCCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-V-------FHIYRLSSGLNKRG-WNT-NSLQFPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-~-------~~i~~l~d~L~~rG-W~v-~~~~~P~~ihi~v 74 (143)
..+...+.++++.+.|++. |+.+. .|+...+.| ..+ . .+..++++.|.++| +.+ +...++..+||++
T Consensus 305 ~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~ 382 (410)
T PRK06290 305 IREKYSRRLDKLVKILNEV-GFKAE-MPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSV 382 (410)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCeec-CCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEE
Confidence 4455566777888999987 77654 455555555 332 1 36778999998874 544 3333445799999
Q ss_pred EecccChhHHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.-...+++-.++|++-|++++..|.
T Consensus 383 ~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 383 TFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred EcccccccchhHHHHHHHHHHhhcc
Confidence 8555567889999999998877653
No 135
>PRK07682 hypothetical protein; Validated
Probab=91.45 E-value=4.2 Score=33.40 Aligned_cols=88 Identities=9% Similarity=0.001 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec---CCCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEEe
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS---DVFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICITH 76 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~---~~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~~ 76 (143)
..+...+.++++.+.|+++ |+++. .|+...+.|-. ...+-.++++.|. ++|+.+.... .+..+||++..
T Consensus 281 ~~~~~~~~~~~~~~~L~~~-~~~~~-~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~ 358 (378)
T PRK07682 281 MRDSYRKRRNFFVTSFNEI-GLTCH-VPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT 358 (378)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCccC-CCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC
Confidence 3444566777888999988 77643 46555555542 2467788998875 7899887532 24578999874
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+.+.+++.++-|++.++.+
T Consensus 359 ---~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 359 ---SLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred ---CHHHHHHHHHHHHHHHhhc
Confidence 3578888888888877644
No 136
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=91.36 E-value=0.92 Score=37.67 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeEEEEecCCC-CHHHHHHHHh--hcCceecCCC----CC---------
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSVIALGSDVF-HIYRLSSGLN--KRGWNTNSLQ----FP--------- 67 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~vVaf~~~~~-~i~~l~d~L~--~rGW~v~~~~----~P--------- 67 (143)
...++..++++.+++.|++.|++..+..| .-.+++|..+.. ....+.+.|+ ..++.+.... .|
T Consensus 249 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~ 328 (366)
T PRK08247 249 LRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIP 328 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCC
Confidence 45567788999999999999999866566 778999975431 1223444443 2233221110 11
Q ss_pred -----------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 68 -----------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 68 -----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.-+|++|- -+.++.+++||+.|++.+
T Consensus 329 ~~~r~~~gi~~~~~R~svG-----lE~~~dl~~dl~~al~~~ 365 (366)
T PRK08247 329 EEIRIANGVCNRLLRFSVG-----IENVEDLIADLKQAFKQV 365 (366)
T ss_pred HHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhhc
Confidence 12344443 378999999999998753
No 137
>PRK08064 cystathionine beta-lyase; Provisional
Probab=91.34 E-value=3.5 Score=34.65 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEecc------C-----------ceeEEEEecCCCCHHHHHHHHhhcCc-----eec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGT------P-----------ATSVIALGSDVFHIYRLSSGLNKRGW-----NTN 62 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~------p-----------~l~vVaf~~~~~~i~~l~d~L~~rGW-----~v~ 62 (143)
..+++..+++..+++.|++.|.+.-+-- | ..++|+|..++ ..++..-+...+. .+.
T Consensus 251 ~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~--~~~~~~f~~~l~l~~~~~s~G 328 (390)
T PRK08064 251 VRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS--EEAVRQFVSHVKLPVFAVSLG 328 (390)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC--HHHHHHHHHhCCcceEcccCC
Confidence 5667778888888888888765532211 1 23589998754 2344444443332 222
Q ss_pred CC-------------C----------C-CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 63 SL-------------Q----------F-PVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 63 ~~-------------~----------~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.. . . +.-+|++|-- +..+.+++||.++++.+++-|
T Consensus 329 ~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGl-----e~~~dli~dl~~Al~~~~~~~ 387 (390)
T PRK08064 329 AVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGL-----ENVDDLIADFEQALSYVEEPV 387 (390)
T ss_pred CCcceeECCcccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhcccCC
Confidence 00 0 1 1235666643 689999999999999875544
No 138
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=91.32 E-value=1.8 Score=36.40 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
...++..++++++++.|++.|+++-+--|. -.+|+|..++ -....+.+.|+- .|+.+..
T Consensus 258 ~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~ 337 (391)
T TIGR01328 258 IRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGD 337 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCC
Confidence 456777889999999999999887654342 3489998752 235666677763 3554432
Q ss_pred CC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 64 LQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 64 ~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. .| .-+|++|-- |.++.+++||+.|++.
T Consensus 338 ~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al~~ 390 (391)
T TIGR01328 338 AETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL-----EDADDLIADLKQALDA 390 (391)
T ss_pred CcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHHHhh
Confidence 21 01 124555542 7899999999999874
No 139
>PRK07505 hypothetical protein; Provisional
Probab=91.17 E-value=2.6 Score=35.10 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=37.6
Q ss_pred CHHHHHHHHhhcCceecCCCCC------CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFP------VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+...+.++|.++|+.+.....| ..+|+++.. +.+++.+++|++-|+++++
T Consensus 343 ~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~-~~t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 343 TAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRA-SHTNDEIKRLCSLLKEILD 398 (402)
T ss_pred HHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCc-cCCHHHHHHHHHHHHHHHH
Confidence 4567899999999998765332 357888764 3457899999999988764
No 140
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=90.94 E-value=5.3 Score=32.64 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEEecccCh
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICITHMHTQP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~~~h~~~ 81 (143)
.+.+.+.++++.+.|++++|+.+. .|..+-+-++.. .+-.++.+.|.++|..+.... + +..+||++.. .
T Consensus 266 ~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~----~ 339 (356)
T PRK08056 266 WQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCE-RPDIDLQRALLTQRILIRSCANYPGLDSRYYRVAIRS----A 339 (356)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcC-CChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEcC----H
Confidence 455667778889999999888754 455544444433 234678999999999876543 1 3468888763 3
Q ss_pred hHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREE 94 (143)
Q Consensus 82 ~~~~~fl~Dl~~a 94 (143)
+..+.|++-|++.
T Consensus 340 ~~~~~l~~~l~~~ 352 (356)
T PRK08056 340 AENERLLAALRNV 352 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 5677888777764
No 141
>PRK03321 putative aminotransferase; Provisional
Probab=90.82 E-value=4.1 Score=33.02 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
+.+..++..+..+.+.+.|++. |+.+. .+..+.+-+.. +.+..++.+.|.+.|..+.... +.++||++.. .+
T Consensus 265 ~~~~~~~~~~~r~~~~~~L~~~-~~~~~-~~~g~~i~i~l-~~~~~~~~~~l~~~gI~v~~~~-~~~iRi~~~~----~~ 336 (352)
T PRK03321 265 LLERVDAVVAERDRVRAALRAA-GWTVP-PSQANFVWLPL-GERTADFAAAAAEAGVVVRPFA-GEGVRVTIGA----PE 336 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCCCEEEEeC-CCCHHHHHHHHHHCCEEEEccC-CCcEEEeeCC----HH
Confidence 3445566677777888999887 66643 34445444444 2357789999999999987642 4569998853 36
Q ss_pred HHHHHHHHHHHHH
Q psy10208 83 VADKFISDVREEL 95 (143)
Q Consensus 83 ~~~~fl~Dl~~ai 95 (143)
..+.|++-|+++.
T Consensus 337 ~~~~~~~al~~~~ 349 (352)
T PRK03321 337 ENDAFLRAARAWR 349 (352)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888777654
No 142
>PRK07568 aspartate aminotransferase; Provisional
Probab=90.68 E-value=8.4 Score=31.71 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCCCCHHHHHHHHhh------cCceecCCC----C----CCee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDVFHIYRLSSGLNK------RGWNTNSLQ----F----PVGI 70 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L~~------rGW~v~~~~----~----P~~i 70 (143)
..+...+..+.+.+.|++++|+.+ ..|+...+.| +.+..+..++++.|.+ .|..+.... . +..+
T Consensus 290 ~~~~~~~~~~~l~~~L~~~~~~~~-~~p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~i 368 (397)
T PRK07568 290 VREEYKKRRDILYEELNKIPGVVC-EKPKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEI 368 (397)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcee-cCCCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeE
Confidence 344556677788899998887764 3455544443 4433366778888754 587766521 1 2468
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
|+++.. ..+..++.++-|+++++...
T Consensus 369 Rls~~~---~~~~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 369 RIAYVL---NEEDLKRAMEILKEALEKYN 394 (397)
T ss_pred EEEEeC---CHHHHHHHHHHHHHHHHHhh
Confidence 888762 34788888888888876544
No 143
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=90.56 E-value=7 Score=32.57 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC------CCHHHHHHHH-hhcCceecCCC---CCCeeeEEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV------FHIYRLSSGL-NKRGWNTNSLQ---FPVGIHICIT 75 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~------~~i~~l~d~L-~~rGW~v~~~~---~P~~ihi~v~ 75 (143)
..+.+.+..+.+.+.|+.++|+.+......+-+-++.+. .|-.++++.| ++.|-.+.... .+..+|+++.
T Consensus 303 ~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~ 382 (403)
T TIGR01265 303 KISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT 382 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec
Confidence 445566677788899998888875443333333333321 2677888885 67899876543 3667999997
Q ss_pred ecccChhHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. .+.+++-++-|++.++
T Consensus 383 ~~---~~~l~~~l~~l~~~~~ 400 (403)
T TIGR01265 383 VP---ESMLEEACSRIKEFCE 400 (403)
T ss_pred CC---HHHHHHHHHHHHHHHH
Confidence 42 3566666666665553
No 144
>PRK05764 aspartate aminotransferase; Provisional
Probab=90.38 E-value=5.5 Score=32.76 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC-C-----CHHHHHHHH-hhcCceecCCC-C--CCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV-F-----HIYRLSSGL-NKRGWNTNSLQ-F--PVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~-~-----~i~~l~d~L-~~rGW~v~~~~-~--P~~ihi~v 74 (143)
..+...+.++.+.+.|++++|+.+.. |+...+.| .... . +-.++.+.| ++.|..+.... + +..+|+++
T Consensus 293 ~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~ 371 (393)
T PRK05764 293 MRQAFEERRDLMVDGLNEIPGLECPK-PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSY 371 (393)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcccC-CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEe
Confidence 34445566778899999998888765 54433333 2221 1 236777776 56799875432 2 46789988
Q ss_pred EecccChhHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. ..+.+++.++-|++++.+
T Consensus 372 ~~---~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 372 AT---SLEDLEEGLERIERFLES 391 (393)
T ss_pred cC---CHHHHHHHHHHHHHHHHh
Confidence 63 357888888888877654
No 145
>PLN02271 serine hydroxymethyltransferase
Probab=90.08 E-value=1.8 Score=38.83 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
.|++-+++++++|+.|++.|.+. ||++++. -++-+|-.+..+++=......|.+-|=.++... .|.++
T Consensus 432 efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGi 510 (586)
T PLN02271 432 EYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGV 510 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcc
Confidence 47889999999999999999997 9999853 345455454445566788889998898887653 35678
Q ss_pred eEEEEecccChhH
Q psy10208 71 HICITHMHTQPGV 83 (143)
Q Consensus 71 hi~v~~~h~~~~~ 83 (143)
||-.. ..|++++
T Consensus 511 RiGT~-alT~rG~ 522 (586)
T PLN02271 511 RIGTP-AMTSRGC 522 (586)
T ss_pred cccCH-HHHhcCC
Confidence 88553 3444433
No 146
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=90.06 E-value=7.8 Score=31.99 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhC----CCeeEeccCceeEEE--Eec-CCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 10 IIETVKYIEKELRSM----DGLFIFGTPATSVIA--LGS-DVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 10 ~~~~a~~l~~~i~~i----~g~~vlg~p~l~vVa--f~~-~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
.-+..+++.++|+++ +.+..+ .+.-.+++ |.. +..+..++.++|.++|-.+... .+..+|++.+. ..+++
T Consensus 304 ~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~-~~~~lRi~~~~-~~~~~ 380 (400)
T PTZ00125 304 AQRLGEVFRDGLKELLKKSPWVKEI-RGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPT-HDNIIRFAPPL-VITKE 380 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEE-ecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeec-CCCEEEEECCc-cCCHH
Confidence 334566677777664 222111 23333333 332 2345678899999999777532 34557776543 34578
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q psy10208 83 VADKFISDVREELAIIMQN 101 (143)
Q Consensus 83 ~~~~fl~Dl~~ai~~~~~~ 101 (143)
.++++++-|++++..+..+
T Consensus 381 ~i~~~l~~l~~~l~~~~~~ 399 (400)
T PTZ00125 381 QLDQALEIIKKVLKSFDSN 399 (400)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887655
No 147
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=90.06 E-value=4.8 Score=32.91 Aligned_cols=81 Identities=7% Similarity=0.036 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----CCCeeeEEEEecccCh
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHMHTQP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~h~~~ 81 (143)
.+...+..+.+.+.|++. |+.+. .|+.+.+.|-....+..++.+.|.++|..+.... .+..+||++.. .+
T Consensus 278 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~ 352 (364)
T PRK07865 278 RERYARRRAVLRPALEAA-GFRVD-HSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA---TD 352 (364)
T ss_pred HHHHHHHHHHHHHHHHHc-CCccc-CCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC---CH
Confidence 344455667778888886 77644 4554554443324466788999999999885532 35578998863 24
Q ss_pred hHHHHHHHHHH
Q psy10208 82 GVADKFISDVR 92 (143)
Q Consensus 82 ~~~~~fl~Dl~ 92 (143)
+.++++++.|+
T Consensus 353 ~~~~~~~~~l~ 363 (364)
T PRK07865 353 ERIAAAVERLA 363 (364)
T ss_pred HHHHHHHHHhh
Confidence 66666666553
No 148
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=89.98 E-value=6.8 Score=32.04 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEEecccCh
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICITHMHTQP 81 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~~~h~~~ 81 (143)
+.+.+..+.+.+.|++++|+.+.. +..+-+-++... +..++.++| ++.|+.+.... .+..+||++...
T Consensus 270 ~~~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~~~~~-~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~---- 343 (360)
T PRK07392 270 AWLPPAREALFQGLASLPGLTPLP-SAANFLLVQSQG-SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTE---- 343 (360)
T ss_pred HHHHHHHHHHHHHHHhCCCcEECC-CCCCEEEEEcCC-CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCH----
Confidence 345556777889999998988754 444444344332 567788775 67899886543 134688888742
Q ss_pred hHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREE 94 (143)
Q Consensus 82 ~~~~~fl~Dl~~a 94 (143)
...+.|.+-|++.
T Consensus 344 ~~~~~l~~al~~~ 356 (360)
T PRK07392 344 AENQRLLEALAAI 356 (360)
T ss_pred HHHHHHHHHHHHH
Confidence 2345555555443
No 149
>PRK12566 glycine dehydrogenase; Provisional
Probab=89.84 E-value=3.3 Score=39.29 Aligned_cols=76 Identities=7% Similarity=0.023 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+|-++++++++..|.+|+++|++ .|+++..+|-+.-|.+.... +..++..+-.++|-++-... ...+.+++...++
T Consensus 352 ~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~~~-~~~~~~~~a~~~~~n~r~~~-~~~~~~s~de~~~ 427 (954)
T PRK12566 352 EGLKRIAQRVHRLTAILAAGLEA-KGIKRLNRHFFDTLTLEVGG-AQAAIIESAEAARINLRILG-RGRLGVSLDETCD 427 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCccceEEEEccC-CHHHHHHHHHHCCCeeEEeC-CCeEEEEeCCCCC
Confidence 58899999999999999999999 69999988766666665431 35567777777888877653 3346667765443
No 150
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=89.78 E-value=5.3 Score=33.60 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTN 62 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~ 62 (143)
...+++..++++.|++.|++.|.++-+.-|. -.+|+|..++ .....+.+.|+- .|+.+.
T Consensus 249 ~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G 328 (386)
T PRK08045 249 VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLG 328 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCC
Confidence 3467888999999999999998886553221 2489998753 224566677763 343332
Q ss_pred CCC-------------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SLQ-------------F-----------PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~~-------------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
... . +.-+|++|-- |.++.+++||.+|++...+
T Consensus 329 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al~~~~~ 385 (386)
T PRK08045 329 GVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI-----EDGEDLIADLENGFRAANK 385 (386)
T ss_pred CCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHHHHHhhc
Confidence 210 0 1234666542 7899999999999986643
No 151
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=89.63 E-value=1.7 Score=35.28 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecCCCCHHHHHHHHhhcCcee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSDVFHIYRLSSGLNKRGWNT 61 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~~~~i~~l~d~L~~rGW~v 61 (143)
-.++.+++.+.++++.++|++ +|++++++|. .++++|..++.+..++...|++ |-.+
T Consensus 259 ~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~i~v 318 (353)
T TIGR03235 259 AQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDGVNSEALIVNLRA-DAAV 318 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCCcCHHHHHHHHhC-CeEE
Confidence 346678888899999999988 6999998653 3478888777888899999976 5444
No 152
>PRK08912 hypothetical protein; Provisional
Probab=89.60 E-value=7.5 Score=32.07 Aligned_cols=86 Identities=8% Similarity=0.174 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCcee-EEEEecC----CCCHHHHHHHH-hhcCceecCCC-------CCCeee
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATS-VIALGSD----VFHIYRLSSGL-NKRGWNTNSLQ-------FPVGIH 71 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~-vVaf~~~----~~~i~~l~d~L-~~rGW~v~~~~-------~P~~ih 71 (143)
+..+...+..+.+.+.|++. |+++. .|+-. .+.+... ..+..++++.| +++|+.+.... .+..+|
T Consensus 286 ~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iR 363 (387)
T PRK08912 286 GMRADLARSRDRLAAGLRRI-GFPVL-PSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVR 363 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEE
Confidence 34455667777888999988 77765 34433 3333433 25777889887 56899876532 135689
Q ss_pred EEEEecccChhHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+++... .+.+++-++-|++++
T Consensus 364 l~~~~~---~~~l~~~l~rl~~~l 384 (387)
T PRK08912 364 FCFAKR---DATLDEAVERLAAAR 384 (387)
T ss_pred EEEeCC---HHHHHHHHHHHHHHH
Confidence 998842 356666666666544
No 153
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=89.23 E-value=4 Score=34.26 Aligned_cols=94 Identities=7% Similarity=0.027 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEeccCc--eeEEEEecCC-C--CHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGTPA--TSVIALGSDV-F--HIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~p~--l~vVaf~~~~-~--~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+.++..+..+++.++|+++. .+.+++++. -..+.+.... + ....+.+.|.++|-.+... .|+.+|++....+
T Consensus 304 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-g~~~lRl~p~~~~- 381 (406)
T PRK12381 304 MLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA-GPNVVRFAPALNI- 381 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC-CCCEEEEeCCccC-
Confidence 44566677888888888762 233344431 1233443221 1 2457788999999777532 3456777665434
Q ss_pred ChhHHHHHHHHHHHHHHHHHcC
Q psy10208 80 QPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+++.++++++-|++++..+.+.
T Consensus 382 t~~~i~~~~~~l~~~l~~~~~~ 403 (406)
T PRK12381 382 SEEEITTGLDRFARACERFVSR 403 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999877654
No 154
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=89.17 E-value=6.3 Score=32.24 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----CCeeeEEEEecccC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----PVGIHICITHMHTQ 80 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----P~~ihi~v~~~h~~ 80 (143)
..+...+..+++.+.|++. |+.+ ..|+-+.+.|...+.+..++.+.|.++|+.+..... +..+||++.. +
T Consensus 271 ~~~~~~~~~~~~~~~L~~~-g~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~---~ 345 (357)
T TIGR03539 271 QKARYAARRAQLKPALEKA-GFRI-DHSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA---T 345 (357)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCC-cCCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC---C
Confidence 3344456667788888886 6664 456666666655444677899999999998876431 3468888863 2
Q ss_pred hhHHHHHHH
Q psy10208 81 PGVADKFIS 89 (143)
Q Consensus 81 ~~~~~~fl~ 89 (143)
.+.+++.++
T Consensus 346 ~~~i~~~~~ 354 (357)
T TIGR03539 346 DERIAAAVA 354 (357)
T ss_pred HHHHHHHHH
Confidence 344444443
No 155
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=89.05 E-value=9.6 Score=31.61 Aligned_cols=88 Identities=9% Similarity=0.110 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-C--CCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEEe
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-V--FHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICITH 76 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-~--~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~~ 76 (143)
.+...+.++++.+.|++. |+.+. .|+-..+.| +.+ . .+-.++.++| .++|+.+.... .+..+|+++..
T Consensus 293 ~~~~~~~~~~~~~~l~~~-~~~~~-~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~ 370 (391)
T PRK07309 293 KKEYIKRRDYIIEKMTDL-GFKII-KPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA 370 (391)
T ss_pred HHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 344455667788888887 67654 455444444 332 2 2556788764 57899886543 14578998874
Q ss_pred cccChhHHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..+.+++.++.|++++++++
T Consensus 371 ---~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 371 ---SMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred ---CHHHHHHHHHHHHHHHHhhc
Confidence 24688888888888876553
No 156
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=88.93 E-value=4.6 Score=33.22 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhhC-CCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 7 TRSIIETVKYIEKELRSM-DGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i-~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
.+++.+..+++.+++.++ ..+..+.+ +....+.+.. ..+..++..+|.++|..+.... +..+|++....+ +++.
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~-~~~lRi~~~~~~-~~~~ 380 (396)
T PRK02627 304 LENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIEL-DRPAAEIVKKALEKGLLINVTG-DNVLRLLPPLII-SKEE 380 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEe-cCcHHHHHHHHHHCCeEEeecC-CCEEEEECCccc-CHHH
Confidence 445555666677766654 11211211 2223444443 2356789999999998886532 345777654333 4689
Q ss_pred HHHHHHHHHHHHHHH
Q psy10208 84 ADKFISDVREELAII 98 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~~ 98 (143)
++++++-|+++++.+
T Consensus 381 i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 381 IDEAVDRLEEVLKEL 395 (396)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998887653
No 157
>PRK08363 alanine aminotransferase; Validated
Probab=88.92 E-value=10 Score=31.49 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC---CCHHHH-HHHHhhcCceecCCC-C----CCeeeEEE
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV---FHIYRL-SSGLNKRGWNTNSLQ-F----PVGIHICI 74 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~---~~i~~l-~d~L~~rGW~v~~~~-~----P~~ihi~v 74 (143)
+..+.+.+..+.+.+.|++++|+++ ..|..+.+.| ..+. .+-.++ ...|.++|..+.... + +..+||++
T Consensus 296 ~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~ 374 (398)
T PRK08363 296 EYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF 374 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEe-cCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe
Confidence 4455667777888899999888774 4577777777 3332 233444 455789999875432 1 34688888
Q ss_pred EecccChhHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. ..+..++.++-|++.+..
T Consensus 375 ~~---~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 375 LP---PVEILEEAMDRFEEFMRE 394 (398)
T ss_pred cC---CHHHHHHHHHHHHHHHHH
Confidence 53 235666677777666543
No 158
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=88.88 E-value=7.6 Score=31.56 Aligned_cols=80 Identities=25% Similarity=0.300 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCC---CCCCeeeEEEEecccChhHH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL---QFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~---~~P~~ihi~v~~~h~~~~~~ 84 (143)
+...+..+.+.+.+++. |+.+. .+..+.+.+.. ..+-.++.+.|.++|..+... ..+..+||++.. .+..
T Consensus 276 ~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~-~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~----~~~~ 348 (359)
T PRK03158 276 EKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDT-GRDANELFEALLKKGYIVRSGAALGFPTGVRITIGL----KEQN 348 (359)
T ss_pred HHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEEC-CCCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecCC----HHHH
Confidence 33445566677888887 77764 34444444433 346678999999999877663 235678888762 4678
Q ss_pred HHHHHHHHHH
Q psy10208 85 DKFISDVREE 94 (143)
Q Consensus 85 ~~fl~Dl~~a 94 (143)
+.|++-|++.
T Consensus 349 ~~l~~al~~~ 358 (359)
T PRK03158 349 DKIIELLKEL 358 (359)
T ss_pred HHHHHHHHHh
Confidence 8888877664
No 159
>KOG2467|consensus
Probab=88.85 E-value=4.5 Score=34.80 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
.|++-+++++.+++.|+++|.+. |++++. |-++-+|-.+..++|=-.+...+..-+-.++.-+ .|.++
T Consensus 318 efk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGi 396 (477)
T KOG2467|consen 318 EFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGI 396 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCce
Confidence 48889999999999999999998 999984 3567677777777776666666666666555543 37788
Q ss_pred eEEEEecccChhH
Q psy10208 71 HICITHMHTQPGV 83 (143)
Q Consensus 71 hi~v~~~h~~~~~ 83 (143)
||- +|..++++.
T Consensus 397 RiG-tPAmTsRG~ 408 (477)
T KOG2467|consen 397 RIG-TPAMTSRGF 408 (477)
T ss_pred ecc-chhhcccCc
Confidence 983 456665443
No 160
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=88.52 E-value=5.9 Score=34.02 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecC----CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSD----VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~----~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~ 77 (143)
+.++..+..+++.++|+++.++..+++ .-+..+-|... ......+.++|.++|..+... ...+++ +|+
T Consensus 347 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~--~~~lr~--~Pp 422 (445)
T PRK09221 347 LFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT--GDTIAL--SPP 422 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec--CCEEEE--ECC
Confidence 456677778888888888744433333 22333444432 112457889999999877532 233444 444
Q ss_pred c-cChhHHHHHHHHHHHHHHHH
Q psy10208 78 H-TQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h-~~~~~~~~fl~Dl~~ai~~~ 98 (143)
. .+++.++++++-|++++.++
T Consensus 423 l~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 423 LIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh
Confidence 3 35789999999999998765
No 161
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=88.51 E-value=6.1 Score=32.77 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEE--ecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIAL--GSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf--~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
..++..+.++++.++|++++ +..+++ +.-.++.| ..+..+..++++.|.++|=.+... .+..+|++... ..++
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~-~~~~lR~~p~~-~~t~ 385 (401)
T PRK00854 309 MIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDT-HDHTIRLAPPL-VITR 385 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecC-CCCEEEEeCCc-ccCH
Confidence 34566667888889998873 333322 33334444 333345678999999999776431 23456776543 3356
Q ss_pred hHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREEL 95 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai 95 (143)
+.++++++-|++++
T Consensus 386 e~i~~~i~~l~~~l 399 (401)
T PRK00854 386 EQVDWALEQIAKVL 399 (401)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999888775
No 162
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=88.48 E-value=8.3 Score=31.73 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhhC----CCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 6 TTRSIIETVKYIEKELRSM----DGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i----~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
..+++.+..+++++.+.++ +.+.-+.. .-..+.+.. ..+...+.+++.++|+.+... .+..+|++... +.+.
T Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~-~~~~lR~~~~~-~~t~ 361 (375)
T PRK04260 286 FLEQALENGNYLQEQLQKALQDKETVTTVRG-LGYMIGIET-TADLSQLVEAARDKGLIVLTA-GTNVIRLLPPL-TLTK 361 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeEEec-cceEEEEEe-cCcHHHHHHHHHhCCCEEecC-CCCEEEEcCCC-ccCH
Confidence 4455566666666666543 21111111 122333333 235678999999999988543 34568887754 4457
Q ss_pred hHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREE 94 (143)
Q Consensus 82 ~~~~~fl~Dl~~a 94 (143)
+.++++++.|+++
T Consensus 362 ~~i~~~l~~l~~~ 374 (375)
T PRK04260 362 EEIEQGIAILSEV 374 (375)
T ss_pred HHHHHHHHHHHHh
Confidence 8899999888765
No 163
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=88.37 E-value=3.9 Score=34.18 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeE--------------eccC---ceeEEEEecCCCC-HHHHHHHHhhcC--ceecCC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFI--------------FGTP---ATSVIALGSDVFH-IYRLSSGLNKRG--WNTNSL 64 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~v--------------lg~p---~l~vVaf~~~~~~-i~~l~d~L~~rG--W~v~~~ 64 (143)
.+.++.-+++..+++.|++.|.+.- .++. ..++|+|...+.+ ..++.+.|+..+ +.+...
T Consensus 244 ~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~ 323 (378)
T TIGR01329 244 IRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSV 323 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCC
Confidence 4556667777778877777665532 2221 2379999886555 678888886543 222111
Q ss_pred -------------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 65 -------------QF-----------PVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 65 -------------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. +.-+|++|-- |.++.+++||+.+++.+
T Consensus 324 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 324 NSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI-----EDVDDLISDLDIAFVTA 376 (378)
T ss_pred CceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhc
Confidence 01 1134565542 78999999999998753
No 164
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=88.11 E-value=3.8 Score=34.49 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhC---CCee-EeccCceeEEEEecCC---CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecc
Q psy10208 6 TTRSIIETVKYIEKELRSM---DGLF-IFGTPATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i---~g~~-vlg~p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h 78 (143)
+.+++.+..++|.++|+++ .++. +-|. ..++++.... -.+...+..+.++|..+... .++.+|+.....|
T Consensus 299 l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG~--Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~-~~~~lR~~p~l~~ 375 (395)
T PRK03715 299 FLEGVRARGEYLKEKLLELSEERGLEGERGE--GLLRALLLGKDIGPQIVEKARDMQPDGLLLNAP-RPNLLRFMPALNV 375 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcCeEEcc--eeEEEEEecCchHHHHHHHHHhccCCCEEEeec-CCCEEEEeCCccc
Confidence 4566677788888888764 1232 2232 3344544322 12233334444459887543 3567888776544
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAII 98 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.++.+++-|+++++.+
T Consensus 376 -t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 376 -TTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred -CHHHHHHHHHHHHHHHHhh
Confidence 5789999999999998764
No 165
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=88.11 E-value=12 Score=30.66 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----CCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----PVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----P~~ihi~v~~~h 78 (143)
.+..+...+..+.+.+.|++++|+.+. .|+.+-+-++.++ --++.+.|.++|..+..... +..+|+++..
T Consensus 264 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~--~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~~-- 338 (354)
T PRK06358 264 KKTIQWIKEEKDFLYNGLSEFKGIKVY-KPSVNFIFFKLEK--PIDLRKELLKKGILIRSCSNYRGLDENYYRVAVKS-- 338 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEc-CCcceEEEEEcCc--hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCC--
Confidence 344555666778889999998887654 5666655555543 35889999999988866421 2458888764
Q ss_pred cChhHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREEL 95 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai 95 (143)
++..+.|++-|+..+
T Consensus 339 --~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 339 --REDNKKLLKALEVIL 353 (354)
T ss_pred --HHHHHHHHHHHHHHh
Confidence 367888888777654
No 166
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=87.60 E-value=4.5 Score=34.50 Aligned_cols=86 Identities=19% Similarity=0.319 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhcCceecCCCCC------CeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQFP------VGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~~~ 77 (143)
+.-++..++++++...++.. |+.+. +...||+.+-. +....-.+++.|.++|-.+.+...| +-+|++++..
T Consensus 294 ~~r~~L~~~~~~~~~~~~~~-~~~~~-~s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ 371 (388)
T COG0156 294 ERRERLQELAAFFRSLLKAL-GLVLL-PSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAA 371 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCccC-CCCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCC
Confidence 34456667777777665554 66653 33444544332 2234668889999999988876443 2389999998
Q ss_pred ccChhHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVRE 93 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ 93 (143)
|+ .+.++.+++-|.+
T Consensus 372 ht-~~~I~~l~~~l~~ 386 (388)
T COG0156 372 HT-EEDIDRLAEALSE 386 (388)
T ss_pred CC-HHHHHHHHHHHHh
Confidence 86 5677777765544
No 167
>PRK07050 cystathionine beta-lyase; Provisional
Probab=87.56 E-value=5.4 Score=33.62 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC----CCHHHHHHHHhhc--Cce
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV----FHIYRLSSGLNKR--GWN 60 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~----~~i~~l~d~L~~r--GW~ 60 (143)
...+++..++|..|++.|++.|++.-+..|. -.+++|..+. .+...+.+.|+.. |+.
T Consensus 262 ~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s 341 (394)
T PRK07050 262 QVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWS 341 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccc
Confidence 4567778889999999999988877554332 2467887642 3567778888764 454
Q ss_pred ecCCC---CCC---------------eeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 61 TNSLQ---FPV---------------GIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 61 v~~~~---~P~---------------~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+.... .|. -+|++|- -|..+.+++||.++++.+
T Consensus 342 ~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svG-----lE~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 342 WGGACSLAMPYDVASMRTAKWPHRGTLVRLYIG-----LEDEADLIADLEQALEAA 392 (394)
T ss_pred cCCccceEeeCcccccchhhcCCCCCEEEEEeC-----cCCHHHHHHHHHHHHHHh
Confidence 43221 021 2455554 378999999999998765
No 168
>PRK06460 hypothetical protein; Provisional
Probab=87.53 E-value=6.1 Score=33.02 Aligned_cols=91 Identities=10% Similarity=0.096 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------------ceeEEEEecCC--CCHHHHHHHHh--hcCcee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-----------------ATSVIALGSDV--FHIYRLSSGLN--KRGWNT 61 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------------~l~vVaf~~~~--~~i~~l~d~L~--~rGW~v 61 (143)
+...++++.++++++++.|++.|.++-+.-| -..+|+|..++ .+..++.+.|+ ..|+.+
T Consensus 240 l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~ 319 (376)
T PRK06460 240 LKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTL 319 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCC
Confidence 3456788999999999999998877654333 14689998752 34667777775 234333
Q ss_pred cCC-------------CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 62 NSL-------------QFP-----------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 62 ~~~-------------~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
... ..+ .-+|++|-- |..+.+++||+.|++.+
T Consensus 320 Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 320 GGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI-----EDVNDLIEDLDRALSTL 375 (376)
T ss_pred CCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhh
Confidence 110 111 125666653 78999999999998754
No 169
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=87.30 E-value=7.4 Score=32.40 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVAD 85 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~ 85 (143)
++..+..+++.++|+++ +...+++ +..+.+.+.... +..++.++|.++|=.+... .+..+|++... ..+++.++
T Consensus 310 ~~~~~~~~~l~~~L~~l-~~~~i~~~~~~g~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~-~~~~iRi~p~l-~~t~e~i~ 385 (396)
T PRK04073 310 ERSLELGEYFKEQLKEI-DNPMIKEVRGRGLFIGVELNE-PARPYCEALKEEGLLCKET-HETVIRFAPPL-VITKEELD 385 (396)
T ss_pred HHHHHHHHHHHHHHHhh-cCCcccceecceEEEEEEecc-hHHHHHHHHHHCCeEEecC-CCCEEEEECCc-ccCHHHHH
Confidence 44556688899999887 3333333 344555554432 3568889999999776432 23456776532 33568899
Q ss_pred HHHHHHHHHH
Q psy10208 86 KFISDVREEL 95 (143)
Q Consensus 86 ~fl~Dl~~ai 95 (143)
++++-|++++
T Consensus 386 ~~~~~l~~~l 395 (396)
T PRK04073 386 WAFEKIKAVL 395 (396)
T ss_pred HHHHHHHHHh
Confidence 9988887764
No 170
>PRK07550 hypothetical protein; Provisional
Probab=86.95 E-value=16 Score=30.09 Aligned_cols=83 Identities=6% Similarity=0.016 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC--CCCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEEeccc
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD--VFHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICITHMHT 79 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~~~h~ 79 (143)
+.+.+..+.+.+.|++++++.+. .+....+-+..+ +.|..+++++| +++|..+.... ....+|+++...
T Consensus 293 ~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~-- 369 (386)
T PRK07550 293 AEIARRRDAFRAVFARLPGWELL-ASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANA-- 369 (386)
T ss_pred HHHHHHHHHHHHHHHhCCCceeC-CCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecC--
Confidence 44555667788888887777543 223333334443 57888999987 56899886532 234689988742
Q ss_pred ChhHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVRE 93 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ 93 (143)
..+.+++.++.|++
T Consensus 370 ~~~~~~~~~~~l~~ 383 (386)
T PRK07550 370 DVAGIGELVERLRA 383 (386)
T ss_pred CHHHHHHHHHHHHh
Confidence 34555555555543
No 171
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=86.85 E-value=14 Score=32.05 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC-----C-CHHHHHHHHhhcCceecCCC-----CCCeeeEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV-----F-HIYRLSSGLNKRGWNTNSLQ-----FPVGIHICI 74 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~-----~-~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v 74 (143)
.++..+..+++.+.|++++|+++ ..|+..-+.| +.+. . +...+.+.|.++|..+.... .+..+|+++
T Consensus 416 ~~~~~~~r~~l~~~L~~~~g~~~-~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~ 494 (517)
T PRK13355 416 GGRVYEQRELVYNALNAIPGISA-VKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY 494 (517)
T ss_pred HHHHHHHHHHHHHHHhcCCCccc-CCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe
Confidence 34567778889999999999875 4677777777 3321 1 22334466888998775432 245688888
Q ss_pred EecccChhHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. ..+.+++-++.|++.++.
T Consensus 495 ~~---~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 495 LP---RLEDLEDAMDRLADFFSY 514 (517)
T ss_pred CC---CHHHHHHHHHHHHHHHHH
Confidence 52 346666666777666654
No 172
>PRK06107 aspartate aminotransferase; Provisional
Probab=86.79 E-value=14 Score=30.83 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC---------C---CCHHHHHH-HHhhcCceecCCC---CCCe
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD---------V---FHIYRLSS-GLNKRGWNTNSLQ---FPVG 69 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~---------~---~~i~~l~d-~L~~rGW~v~~~~---~P~~ 69 (143)
.+..-+..+.+.+.|++++|+.+. .|+-..+.|- .+ . .|--++.. .++++|+.+.... .+..
T Consensus 297 ~~~~~~~~~~~~~~L~~~~g~~~~-~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~ 375 (402)
T PRK06107 297 VAVYKQRRDYALALLNAIPGLSCL-VPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPY 375 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCe
Confidence 344455666778888888787654 3544444442 11 1 13345554 4567899876542 3567
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+|+++.. ..+.+++.++-|++.++.+
T Consensus 376 iRis~~~---~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 376 FRLSIAT---SLETLEEACARIERAVAAL 401 (402)
T ss_pred EEEEeCC---CHHHHHHHHHHHHHHHHhc
Confidence 8998884 3578888888888877655
No 173
>KOG2040|consensus
Probab=86.46 E-value=6.1 Score=36.44 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEE--Ee--------cCCCCHHHHHHHHhhcCceecCCCCCCeee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIA--LG--------SDVFHIYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVa--f~--------~~~~~i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
|.+...+--+-+|.|++++|+. +++++-.-....|| |- +.+++.-|++.+|...|+|-|+..-|.+=-
T Consensus 814 GL~~as~~AiLNaNYMakRLe~--hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~gt 891 (1001)
T KOG2040|consen 814 GLKDASKIAILNANYMAKRLES--HYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVAGT 891 (1001)
T ss_pred ccchhhHHHhhhhHHHHHHHhh--ccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccCCc
Confidence 6667778788899999999998 47777654444555 32 236888999999999999999998887766
Q ss_pred EEEEecccC--hhHHHHHHH---HHHHHHHHHHcC
Q psy10208 72 ICITHMHTQ--PGVADKFIS---DVREELAIIMQN 101 (143)
Q Consensus 72 i~v~~~h~~--~~~~~~fl~---Dl~~ai~~~~~~ 101 (143)
++|-| .-+ ..-+|+|.+ -+|+.|.++.+.
T Consensus 892 LMIEP-TESE~k~ElDRfcdAliSIreEI~~ie~G 925 (1001)
T KOG2040|consen 892 LMIEP-TESEDKAELDRFCDALISIREEIAQIEEG 925 (1001)
T ss_pred eEecc-CccccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77764 333 244778877 456666666543
No 174
>PRK08114 cystathionine beta-lyase; Provisional
Probab=86.46 E-value=5.6 Score=33.87 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC----CCHHHHHHHHhh--cCcee
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV----FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~----~~i~~l~d~L~~--rGW~v 61 (143)
-++++..++|..+++.|++.|.++-+.-|. ..+|+|..++ .....+.+.|+- .|+.+
T Consensus 261 lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~Sl 340 (395)
T PRK08114 261 VRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSW 340 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeeccc
Confidence 357788889999999999998877554332 3589998753 224556666653 23322
Q ss_pred cCCC------CC----------------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 62 NSLQ------FP----------------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 62 ~~~~------~P----------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.... .| .-+|++|- -|.++.+++||+.|++.+
T Consensus 341 Gg~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvG-----lEd~~DLi~Dl~~Al~~~ 394 (395)
T PRK08114 341 GGFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIG-----LEDVDDLIADLAAGFARI 394 (395)
T ss_pred CCccceeccCCchhhhccCChhHhcCCCCeEEEEec-----cCCHHHHHHHHHHHHHhh
Confidence 2110 01 12455554 378999999999998754
No 175
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=85.94 E-value=16 Score=30.75 Aligned_cols=87 Identities=16% Similarity=0.286 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCCCCHHHHHHHHhhcCceecCCC-C-----CCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDVFHIYRLSSGLNKRGWNTNSLQ-F-----PVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L~~rGW~v~~~~-~-----P~~ihi~v~~~ 77 (143)
+..+.+.+..+.+.+.|++. |+++. .|.-..+.| ..+. +..++.+.|.+.|-.+.... + +..+||++..
T Consensus 337 ~~~~~~~~~r~~~~~~L~~~-~~~~~-~p~gg~f~~~~l~~-~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~- 412 (431)
T PRK15481 337 QARLFYAQRRQKLARALQQY-GIAIP-SPGDGLNLWLPLDT-DSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST- 412 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccc-cCCCeEEEEEECCC-CHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-
Confidence 34555666677788888887 66643 343334444 3332 56788999999998876632 1 2358888874
Q ss_pred ccChhHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELA 96 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~ 96 (143)
.+.+.++++++-|++++.
T Consensus 413 -~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 413 -LNDAEINRLAADLHQALN 430 (431)
T ss_pred -CChHHHHHHHHHHHHHhc
Confidence 335778888888887753
No 176
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=85.71 E-value=8 Score=33.07 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc-C
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT-Q 80 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~-~ 80 (143)
..+++.+..+++.++|+++..+..+++ --+-.|-|.. +.+...+.+.|.++|-.+... +-.+.++|+.+ +
T Consensus 332 ~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~-~~~~~~~~~~l~~~Gl~~~~~----g~~i~~~Ppl~it 406 (428)
T PRK07986 332 WQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTR-PVNMAALQRFFVEQGVWIRPF----GKLIYLMPPYIIL 406 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCC-cccHHHHHHHHHHCCcEEEec----CCEEEEeCCCCCC
Confidence 356666777888888887633434444 1222223332 234568899999999776533 22456666544 6
Q ss_pred hhHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELA 96 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~ 96 (143)
++.++++++-|.++++
T Consensus 407 ~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 407 PEQLQRLTAAVNRAVQ 422 (428)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999998874
No 177
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=85.70 E-value=3.2 Score=34.34 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------------ceeEEEEecCC--CCHHHHHHHHhhc--Cceec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP-----------------ATSVIALGSDV--FHIYRLSSGLNKR--GWNTN 62 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------------~l~vVaf~~~~--~~i~~l~d~L~~r--GW~v~ 62 (143)
....++..++++++++.|++.|+++-+.-| ..++|+|..++ .....+.+.|+-- |..+.
T Consensus 237 ~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G 316 (369)
T cd00614 237 PLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLG 316 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCC
Confidence 356778889999999999999887654333 36789998752 3456666776642 33222
Q ss_pred CC-------------CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 63 SL-------------QFP-----------VGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 63 ~~-------------~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
.. ..| .-+|++|- -+.++.+++||+.++
T Consensus 317 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svG-----lE~~~dl~~dl~~al 368 (369)
T cd00614 317 GVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVG-----IEDVEDLIADLEQAL 368 (369)
T ss_pred CCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHhh
Confidence 11 011 12455554 378999999999885
No 178
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=85.61 E-value=9.8 Score=31.80 Aligned_cols=91 Identities=7% Similarity=0.015 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEecc--CceeEEEEe--cC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGT--PATSVIALG--SD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~--p~l~vVaf~--~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+.++..+..+++.++|+++. .+.++++ +.-.++++. .+ .-+...+...|.++|=.+... .++.+|++....|
T Consensus 300 l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~-g~~~lR~~p~~~~- 377 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA-GPNVVRFAPSLVI- 377 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec-CCCEEEEeCCCCC-
Confidence 45666778888889888863 1333433 222333332 21 113457888999999776542 2445777655444
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.++++++-|++++..+
T Consensus 378 t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 378 SDDDIDEGLARFERAIEQV 396 (397)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5788999999998888654
No 179
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=85.26 E-value=18 Score=30.23 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-----C-CCHHHHHHHHh-hcCceecCCC---CCCeeeEEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-----V-FHIYRLSSGLN-KRGWNTNSLQ---FPVGIHICIT 75 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-----~-~~i~~l~d~L~-~rGW~v~~~~---~P~~ihi~v~ 75 (143)
.+.+.+..+.+.+.|++..|+.+. .|+-..+.| +.+ + .+..++.+.|. ++|-.+.... .+..+|+++.
T Consensus 311 ~~~~~~~r~~l~~~L~~~~~~~~~-~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~ 389 (412)
T PTZ00433 311 VAKLEEGAMVLYNHIGECIGLSPT-MPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS 389 (412)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccc-CCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec
Confidence 345556667788888887676643 454333433 332 1 25568888886 5798776543 3668999997
Q ss_pred ecccChhHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. .+.+++-++-|++++...
T Consensus 390 ~~---~e~l~~al~~l~~~~~~~ 409 (412)
T PTZ00433 390 RP---VEVLREAVERIKAFCERH 409 (412)
T ss_pred CC---HHHHHHHHHHHHHHHHHh
Confidence 42 467777777777776644
No 180
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=85.12 E-value=12 Score=31.69 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecCC-----CCHHHHHHHHhhcCceecC-CCCCCeeeEEEE
Q psy10208 7 TRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSDV-----FHIYRLSSGLNKRGWNTNS-LQFPVGIHICIT 75 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~~-----~~i~~l~d~L~~rGW~v~~-~~~P~~ihi~v~ 75 (143)
.+++.+..+++.++|+++. .+.++++ +-+--+-|..+. .....+...|.++|=.+.. -+....+|++..
T Consensus 329 ~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~ 408 (433)
T PRK08117 329 LDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPP 408 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCC
Confidence 4555666777888887752 1223333 223234454321 1234677888899954432 222345666554
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
..| +++.++++++-|.++++.+.+
T Consensus 409 ~~~-t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 409 LTV-TKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred ccC-CHHHHHHHHHHHHHHHHHHhc
Confidence 334 578999999999999887643
No 181
>PF13991 BssS: BssS protein family
Probab=85.12 E-value=2.5 Score=27.83 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC
Q psy10208 81 PGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.+++.+|+.+|.+.|+.+.+..
T Consensus 44 ~e~Ar~Li~~L~~~I~kiE~se 65 (73)
T PF13991_consen 44 TEMARQLISILEAGIDKIESSE 65 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999999999864
No 182
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=85.06 E-value=13 Score=32.03 Aligned_cols=93 Identities=10% Similarity=0.037 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC------------------ceeEEEEecCC--CCHHHHHHHHhh--cCce
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP------------------ATSVIALGSDV--FHIYRLSSGLNK--RGWN 60 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------------------~l~vVaf~~~~--~~i~~l~d~L~~--rGW~ 60 (143)
+-..+++..++|..|++.|++.|+++-+--| --.+|+|..++ -....+.+.|+- .++.
T Consensus 296 L~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~s 375 (436)
T PRK07812 296 LSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVAN 375 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecc
Confidence 3456788889999999999999988655333 13589998642 225677777763 2332
Q ss_pred ecC---------C----CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 61 TNS---------L----QFP-----------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 61 v~~---------~----~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.. . ..| .-+|++|-- |..+.+++||+.+++..++
T Consensus 376 lG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl-----Ed~~dli~dl~~Al~~~~~ 434 (436)
T PRK07812 376 IGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI-----EGIDDILADLEAGFAAAKA 434 (436)
T ss_pred cCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhhhc
Confidence 211 1 011 124555542 7899999999999987765
No 183
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=85.02 E-value=8.4 Score=31.76 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-------ceeEEEEec-CCCCHHHHHHHHhhcCceec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-------ATSVIALGS-DVFHIYRLSSGLNKRGWNTN 62 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-------~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~ 62 (143)
+.++.++-.++++++.+.|++++++++...+ ...+|.|.. .+.+-.++.+.|+++|-.+.
T Consensus 257 l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~ 324 (380)
T TIGR03588 257 LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQ 324 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcc
Confidence 4456667788899999999999988866442 223344432 24567899999999886554
No 184
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=84.83 E-value=11 Score=32.00 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEec-ccCh
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHM-HTQP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~-h~~~ 81 (143)
.++..+..++|.++|+++.....+++ ..+.-|-|. +..+...+.++|.++|-.+.... -++.+.|+ ..++
T Consensus 336 ~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~-~~~~~~~~~~~l~~~Gv~~~~~~----~~l~~~ppl~~t~ 410 (427)
T TIGR00508 336 QKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMY-KPVNVEELQKKFVEQGVWIRPFG----KLIYVMPPYIITT 410 (427)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEEC-CccCHHHHHHHHHHCCeEEEecC----CEEEEECCCCCCH
Confidence 45667778889999888742222332 222233343 23456788999999997775432 23445554 2346
Q ss_pred hHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELA 96 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~ 96 (143)
+.++++++-+++++.
T Consensus 411 ~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 411 EQLQKLTAALIEALH 425 (427)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999998888875
No 185
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=84.77 E-value=19 Score=30.57 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC-----C-CCHHHHHHHH-hhcCceecCC---CCCCeee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD-----V-FHIYRLSSGL-NKRGWNTNSL---QFPVGIH 71 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~-----~-~~i~~l~d~L-~~rGW~v~~~---~~P~~ih 71 (143)
+++..+...+.++.+.+.|++++|+.....|+-....|- .+ + .|-.+++.+| ++.|..+... ..+..+|
T Consensus 322 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lR 401 (430)
T PLN00145 322 FTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLR 401 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEE
Confidence 345556666777788899999988876555655454442 22 1 2445566544 5678877553 3466799
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
|++.. ..+.+++-++.|++.+..-+
T Consensus 402 is~~~---~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 402 ITFAI---DPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred EEeCC---CHHHHHHHHHHHHHHHHHhc
Confidence 99873 34666666776666665443
No 186
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=84.70 E-value=19 Score=29.56 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChh
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPG 82 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~ 82 (143)
..+...+..+.+.+.|++. |+++. .+..+-+-+.. +.+-.++.+.|.++|..+.... .+..+|+++.. ..
T Consensus 284 ~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~-~~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~~----~~ 356 (371)
T PRK05166 284 GVALALAERERLKKELAEM-GYRIA-PSRANFLFFDA-RRPASAVAEALLRQGVIVKPWKQPGFETFIRVSIGS----PE 356 (371)
T ss_pred HHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeC-CCCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcCC----HH
Confidence 3445566677888999988 77753 34444333332 3356789999999998776543 24568888873 24
Q ss_pred HHHHHHHHHHHH
Q psy10208 83 VADKFISDVREE 94 (143)
Q Consensus 83 ~~~~fl~Dl~~a 94 (143)
..+.|++-|++.
T Consensus 357 ~~~~l~~~l~~i 368 (371)
T PRK05166 357 ENDHFVAALDKV 368 (371)
T ss_pred HHHHHHHHHHHH
Confidence 466777666654
No 187
>PRK12301 bssS biofilm formation regulatory protein BssS; Reviewed
Probab=84.64 E-value=2.3 Score=28.46 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=42.8
Q ss_pred CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 33 PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 33 p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
|..|||+|.-..+|.|+.. |-+.-..-+..|.|...+..=+.+. +.+++.+|+.+|.+-++.++...
T Consensus 9 qthPvvGWdistvd~YDAm--mirlhyLss~~Q~~e~A~v~~tlwL-TtdvArqlI~iLeagI~kiesse 75 (84)
T PRK12301 9 QTHPLVGWDISTVDSYDAL--MLRLHYQSPNDQEPEGAEVGQTLWL-TTDVARQFISILEAGIAKIESGD 75 (84)
T ss_pred cccccccccccCcccHhhH--HHhhhhcCCCCCCcccccccceEEe-cHHHHHHHHHHHHHHHHHHhccc
Confidence 4568999987777777421 2233333344455555544333322 24899999999999999998753
No 188
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=84.58 E-value=7.9 Score=32.45 Aligned_cols=89 Identities=8% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC-CCHHHHHHHHhh--cCceecC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV-FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~-~~i~~l~d~L~~--rGW~v~~ 63 (143)
...+++..++++.+++.|++.|.++-+..|. -++++|..++ .....+.+.|+- .|+.+..
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~~~~~s~G~ 325 (380)
T PRK06176 246 GLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGG 325 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEccCCCC
Confidence 4567788889999999999988887554432 3578888742 234566666653 3443322
Q ss_pred CC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 64 LQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 64 ~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. .| .-+|++|- -|.++.+++||+.|++.
T Consensus 326 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dli~dl~~Al~~ 378 (380)
T PRK06176 326 VESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG-----IEHEQDLLEDLEQAFAK 378 (380)
T ss_pred CCceeeCCcccccccCCHHHHHhcCCCcCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence 11 01 12455554 37899999999999874
No 189
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=84.33 E-value=13 Score=30.15 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----CCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----PVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----P~~ihi~v~~~h 78 (143)
.++.+.+.+..+.+.+.|++++++++.+ +..+.+.+..+ +..++.++|.++|..+..... +..+|+++...+
T Consensus 244 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~f~~~~~~--~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~ 320 (330)
T TIGR01140 244 AATRARLAAERARLAALLARLGGLEVVG-GTALFLLVRTP--DAAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDE 320 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceECC-CCCeEEEEEcC--CHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHH
Confidence 4456677778888999999997676643 33333333333 356899999999998866432 246888776422
Q ss_pred cChhHHHHHHHH
Q psy10208 79 TQPGVADKFISD 90 (143)
Q Consensus 79 ~~~~~~~~fl~D 90 (143)
+. +.|+.-
T Consensus 321 ---~~-~~~~~~ 328 (330)
T TIGR01140 321 ---EN-DRLEEA 328 (330)
T ss_pred ---HH-HHHHHh
Confidence 33 666553
No 190
>PRK07036 hypothetical protein; Provisional
Probab=84.33 E-value=13 Score=32.07 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCC-----C--C---HHHHHHHHhhcCceecCCCCCCeee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDV-----F--H---IYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~-----~--~---i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
+.+++.+..++|.++|+++..+.++++ --+..|-|..+. + + ...+.+.+.++|=.+... +-.
T Consensus 350 l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----~~~ 425 (466)
T PRK07036 350 LCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL----EHL 425 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec----CCE
Confidence 445666777888888877644434433 334445554321 1 1 235778888999766432 224
Q ss_pred EEEEeccc-ChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHT-QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~h~-~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+.++|+++ +++.++++++-+.++++.+.
T Consensus 426 ~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 426 CVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred EEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 55777764 67899999999988887763
No 191
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=84.24 E-value=21 Score=30.62 Aligned_cols=89 Identities=8% Similarity=0.055 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhC---CC--eeEeccCceeEEEEecCCC-C-----------HHHHHHHHhhcCceecCCCCCCe
Q psy10208 7 TRSIIETVKYIEKELRSM---DG--LFIFGTPATSVIALGSDVF-H-----------IYRLSSGLNKRGWNTNSLQFPVG 69 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i---~g--~~vlg~p~l~vVaf~~~~~-~-----------i~~l~d~L~~rGW~v~~~~~P~~ 69 (143)
.+++.+..++|.++|+++ .| +...+...+.-|-|..+.. | ...+...|.++|-.+.....|.
T Consensus 325 ~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~- 403 (433)
T PRK00615 325 YTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEA- 403 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccc-
Confidence 445555666776665542 12 3334433444555654321 1 2367788889997665443333
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..++..|+ ++.+|.+++-++++++.+-
T Consensus 404 --~~ls~~ht-~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 404 --SFLSSAHS-MENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred --cceecCCC-HHHHHHHHHHHHHHHHHHh
Confidence 25677775 6899999999999988764
No 192
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=84.17 E-value=17 Score=31.73 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhh-CCCeeEeccC-ce-eEEE--EecCC-----C--C-HHHHHHHHhhcCceecCCCCCCeeeE
Q psy10208 6 TTRSIIETVKYIEKELRS-MDGLFIFGTP-AT-SVIA--LGSDV-----F--H-IYRLSSGLNKRGWNTNSLQFPVGIHI 72 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~-i~g~~vlg~p-~l-~vVa--f~~~~-----~--~-i~~l~d~L~~rGW~v~~~~~P~~ihi 72 (143)
+.+++.+...+|.++|++ +++...+||- .+ -+.+ +..+. + . -..+.+...++|-.+-+ -+.++
T Consensus 342 l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp----~g~~i 417 (449)
T COG0161 342 LLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRP----LGDVI 417 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEee----cCCEE
Confidence 456677889999999998 6555577773 21 1223 33221 1 1 23556666778865543 36689
Q ss_pred EEEeccc-ChhHHHHHHHHHHHHHHHHHcC
Q psy10208 73 CITHMHT-QPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 73 ~v~~~h~-~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.++|+.+ +++-++++++-++++++...+.
T Consensus 418 ~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 418 YLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred EEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999887 6899999999999999987654
No 193
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=84.09 E-value=17 Score=30.71 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTN 62 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~ 62 (143)
...+++..++++.+++.|++.|.++-+.-|. -.+|+|..++ -....+.+.|+- .|+.+.
T Consensus 260 ~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G 339 (398)
T PRK08249 260 KLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLG 339 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCC
Confidence 3456777899999999999988877543332 3589997642 235566777763 454332
Q ss_pred CCC-------------CC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SLQ-------------FP-----------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~~-------------~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
... +| .-+|++|- -|.++.+++||..+++.+++
T Consensus 340 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~~~~ 396 (398)
T PRK08249 340 AVETIYGPARTTSHVENTLEERAALGIPEGLVRISVG-----IEDTEDLIADLEQAFAHLES 396 (398)
T ss_pred CCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHHhhh
Confidence 210 11 12455554 37899999999999987654
No 194
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=83.92 E-value=12 Score=31.66 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCce-----------------eEEEEecCC-C-CHHHHHHHHhh--cCcee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPAT-----------------SVIALGSDV-F-HIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l-----------------~vVaf~~~~-~-~i~~l~d~L~~--rGW~v 61 (143)
+.-++++.-++|+.|++.|++.|.++-+--|.+ .+|+|..++ . ....+.+.|+- .|+.+
T Consensus 253 l~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~Sl 332 (386)
T PF01053_consen 253 LPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSL 332 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhc
Confidence 345678888999999999999998885544422 589998764 2 46677788763 45443
Q ss_pred cCCC----C--------------------CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 62 NSLQ----F--------------------PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 62 ~~~~----~--------------------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.... . +.-+|++|-- |..+.+++||+.|++
T Consensus 333 Gg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl-----Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 333 GGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL-----EDPDDLIADLEQALE 386 (386)
T ss_dssp SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S-----S-HHHHHHHHHHHHH
T ss_pred CCcccccccccchhhccCChhhhhccCCCCCeeEEEecc-----CCHHHHHHHHHHhcC
Confidence 3221 1 1235666653 789999999999875
No 195
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=83.84 E-value=22 Score=29.46 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-C------CCCHHHHHHHH-hhcCceecCC---CCCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-D------VFHIYRLSSGL-NKRGWNTNSL---QFPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~------~~~i~~l~d~L-~~rGW~v~~~---~~P~~ihi~v 74 (143)
..+.+.+..+.+.+.|++++|+... .|+-..+.|-. + ..+-.++.++| ++.|=.+... ..+..+|+++
T Consensus 301 ~~~~~~~~r~~l~~~L~~~~~~~~~-~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~ 379 (401)
T TIGR01264 301 TLSVLESNAMLCYGALAAVPGLRPV-MPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL 379 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccc-CCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE
Confidence 3445555677788999998776643 34433343322 1 13556777776 4788877543 2467899999
Q ss_pred EecccChhHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
... .+.+++-++-|++.++
T Consensus 380 ~~~---~~~l~~~l~rl~~~~~ 398 (401)
T TIGR01264 380 TVP---VVMMEEACSRIQEFCE 398 (401)
T ss_pred cCC---HHHHHHHHHHHHHHHh
Confidence 742 3677777777766654
No 196
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=83.77 E-value=11 Score=32.87 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCeeEeccCc----eeEEEEecC----CCC---HHHHHHHHhhcCceecC-CCCCCeee
Q psy10208 5 NTTRSIIETVKYIEKELRSM-DGLFIFGTPA----TSVIALGSD----VFH---IYRLSSGLNKRGWNTNS-LQFPVGIH 71 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i-~g~~vlg~p~----l~vVaf~~~----~~~---i~~l~d~L~~rGW~v~~-~~~P~~ih 71 (143)
++.++..+.-++|.++|+++ ..+..+||.. +--|-|..+ +-+ ...+.+++.++|-.+.. ......+|
T Consensus 341 ~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviR 420 (447)
T COG0160 341 NLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLR 420 (447)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEE
Confidence 35667777788888888764 2455788852 344556542 122 34788999999965544 34566778
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|.- |..++++.+|++++-|.+++.++
T Consensus 421 i~P-PL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 421 ILP-PLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred EeC-CcccCHHHHHHHHHHHHHHHHhh
Confidence 743 45557899999999999998765
No 197
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=83.72 E-value=17 Score=31.49 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhCC-Cee-Ee----ccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-CCCeeeEEEEecc
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLF-IF----GTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-FPVGIHICITHMH 78 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~-vl----g~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~P~~ihi~v~~~h 78 (143)
..+++.+..++|.++|+++. .+. ++ |..-+.-|-|..+. -...+...|.++|-.+.... .+..+|++... .
T Consensus 355 l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~-~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl-~ 432 (459)
T PRK11522 355 LPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPL-T 432 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCch-HHHHHHHHHHHCCeEEEecCCCCCEEEEECCc-c
Confidence 45667778888888888752 222 23 33223333343321 24578899999997775321 23446665543 3
Q ss_pred cChhHHHHHHHHHHHHHHHHHc
Q psy10208 79 TQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+++.++++++-|.++++.+..
T Consensus 433 ~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 433 LTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999987764
No 198
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=83.65 E-value=9.8 Score=31.74 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEec-cCceeEEEEecCC-CCHHHHHHHHhh--cCceecCCC----CC--------
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFG-TPATSVIALGSDV-FHIYRLSSGLNK--RGWNTNSLQ----FP-------- 67 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p~l~vVaf~~~~-~~i~~l~d~L~~--rGW~v~~~~----~P-------- 67 (143)
..+.++..++++.+++.|++.|+++-+- .|.-.+++|...+ -....+.+.|+- .|+.+.... .|
T Consensus 248 ~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~ 327 (364)
T PRK07269 248 SLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADI 327 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccC
Confidence 3466777889999999999998875544 5667789998642 223455555543 344332210 11
Q ss_pred ------------CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 68 ------------VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 68 ------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.-+|++|- -+.++.+++||+++++
T Consensus 328 ~~~~r~~~Gi~~~liRlsvG-----lE~~~dli~dl~~al~ 363 (364)
T PRK07269 328 PAEVRHSYGLTDDLLRLSIG-----IEDARDLIADLKQALE 363 (364)
T ss_pred CHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHhc
Confidence 12455554 3789999999999864
No 199
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=83.57 E-value=12 Score=31.92 Aligned_cols=86 Identities=7% Similarity=0.040 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc-Ch
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT-QP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~-~~ 81 (143)
.+++.+..++|.++|+++..+..+++ -.+--|-|.. ..+--.+.+.+.++|-.+... +-.+.++|+.+ ++
T Consensus 330 ~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~-~~~~~~~~~~~~~~Gl~~~~~----g~~l~~~PpL~it~ 404 (422)
T PRK05630 330 RKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQ-PVDMEEATQAAVDHGVWLRPF----GRLVYVMPPYITTS 404 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECC-cccHHHHHHHHHHCCeEEEec----CCEEEEECCccCCH
Confidence 34666777788887776533223333 2222333432 233457888999999776543 22355666544 68
Q ss_pred hHHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELAI 97 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~ 97 (143)
+.++++++-|++++..
T Consensus 405 ~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 405 EQIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999999988753
No 200
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=83.53 E-value=12 Score=32.18 Aligned_cols=89 Identities=11% Similarity=0.040 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC-CCHHHHHHHHhhcC--ceecCC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV-FHIYRLSSGLNKRG--WNTNSL 64 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~-~~i~~l~d~L~~rG--W~v~~~ 64 (143)
-++++..++|+.|++-|++-|.++-+--|. -.+|+|..++ -++..+.+.|+--. -.+...
T Consensus 263 ~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~~~a~SlGgv 342 (396)
T COG0626 263 LRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGV 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCccEEeccCCCc
Confidence 356777888999999999988888665552 4689998766 56777777776432 111110
Q ss_pred ----CC---------C-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 65 ----QF---------P-----------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 65 ----~~---------P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. | .-+|++|- -+.++.+++||+.+++.+
T Consensus 343 eSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG-----lEd~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 343 ESLISHPATMTHASIPLEERAKAGITDGLVRLSVG-----LEDVEDLIADLEQALAKA 395 (396)
T ss_pred ccccccccccCcccCCHhHHHhcCCCCCeEEEEec-----CCCHHHHHHHHHHHHHhh
Confidence 11 1 11355443 388999999999998865
No 201
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=83.11 E-value=15 Score=30.96 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
-++++..++|+.|++.|++.|.++-+.-|. -.+|+|..++ -....+.+.|+- .|+.+..
T Consensus 251 lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~ 330 (388)
T PRK08861 251 ARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGG 330 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCC
Confidence 467778889999999999998876543221 2488998752 225566677663 3443322
Q ss_pred CC-------------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 64 LQ-------------F-----------PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 64 ~~-------------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.. . +.-+|++|-- |.++.+++||+.|++.+..
T Consensus 331 ~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-----E~~~dli~Dl~~al~~~~~ 386 (388)
T PRK08861 331 VESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL-----EDAQDLIADLDQAFAKAAE 386 (388)
T ss_pred CcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHHHHHHHh
Confidence 10 0 1235666643 7899999999999987764
No 202
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=83.01 E-value=17 Score=31.09 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhC---CCeeEeccCcee-EEEEecCC------CCHHHHHHHHhhcCc---eecCCCCCC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSM---DGLFIFGTPATS-VIALGSDV------FHIYRLSSGLNKRGW---NTNSLQFPV 68 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i---~g~~vlg~p~l~-vVaf~~~~------~~i~~l~d~L~~rGW---~v~~~~~P~ 68 (143)
||.+..++.++.-.++.+++++. -+-+++..|.-| .++|+.+. -+.+.|...|.+||- .+-....+.
T Consensus 272 g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~ 351 (389)
T PF05889_consen 272 GYGALLKERKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKK 351 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCc
Confidence 78999999999999999998763 144444446433 46677653 357999999988764 211111111
Q ss_pred e---------eeEEE-EecccChhHHHHHHHHHHHHHH
Q psy10208 69 G---------IHICI-THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 69 ~---------ihi~v-~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
. --+++ .-.-++++.+|.|++-|+++++
T Consensus 352 ~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 352 QTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred ccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 1 12333 2234467899999999999875
No 203
>PRK07678 aminotransferase; Validated
Probab=82.78 E-value=25 Score=30.16 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCee----EeccCceeEEEEecCC-----CC---HHHHHHHHhhcCceecCC-C-CCC-e
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLF----IFGTPATSVIALGSDV-----FH---IYRLSSGLNKRGWNTNSL-Q-FPV-G 69 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~----vlg~p~l~vVaf~~~~-----~~---i~~l~d~L~~rGW~v~~~-~-~P~-~ 69 (143)
+.+++.+..++|.++|+++ ..+. +-|..-+.-+-|..+. .| ...+...|.++|-.+... + .|. .
T Consensus 341 ~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~ 420 (451)
T PRK07678 341 LIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYN 420 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCC
Confidence 3445566677777777542 2222 2233333334443221 12 357788899999776431 1 122 1
Q ss_pred eeEEEEeccc-ChhHHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHT-QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 70 ihi~v~~~h~-~~~~~~~fl~Dl~~ai~~~~ 99 (143)
-.+.++|+++ +++.++++++-++++++.++
T Consensus 421 ~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (451)
T PRK07678 421 NVLTLSPPLVISSEEIAFIVGTLKTALERIK 451 (451)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 3355666553 57889999999999987653
No 204
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=82.54 E-value=10 Score=31.93 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEec------cCc-----------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFG------TPA-----------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg------~p~-----------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
...++..++++.+++.|++.|++.-+. +|+ ..+|+|..++ .....+.+.|+- .++.+..
T Consensus 263 ~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~ 342 (398)
T PRK07504 263 VRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGD 342 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCC
Confidence 455666799999999999998876332 232 4589998742 334566677653 3333322
Q ss_pred CC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 64 LQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 64 ~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.. .| .-+|++|- -+..+.+++||+.+++.++
T Consensus 343 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~~~ 397 (398)
T PRK07504 343 AKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG-----LEDTDDLIEDLAAALKKVR 397 (398)
T ss_pred CCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhhh
Confidence 10 01 12455554 3789999999999998764
No 205
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=82.35 E-value=21 Score=30.62 Aligned_cols=90 Identities=10% Similarity=0.004 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecC----CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSD----VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~----~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~ 77 (143)
..++..+..+++.++|+++..+..+++. -+.-+-|... .....++.++|.++|-.+.... ..+|++-..
T Consensus 344 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~--~~lr~~Ppl- 420 (442)
T PRK13360 344 LLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG--DILALSPPL- 420 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC--CEEEEeCCC-
Confidence 3456667788888888876444333332 2222334321 1234678889999997775422 334553322
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+++.+|++++-|+++++++
T Consensus 421 ~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 421 IIEEAQIDELFDILAQALKET 441 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHh
Confidence 235789999999999998654
No 206
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=82.26 E-value=9.2 Score=32.06 Aligned_cols=87 Identities=6% Similarity=-0.000 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
...++..++++.+++.|++.|+++-+--|. -.+|+|..++ -....+.+.|+- .|+.+..
T Consensus 259 ~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~ 338 (388)
T PRK07811 259 VRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGG 338 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCC
Confidence 456677889999999999999887554332 2489998742 235566677663 4554432
Q ss_pred CC-------------C--------CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 64 LQ-------------F--------PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 64 ~~-------------~--------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. . +.-+|++|- -+..+.+++||..|++
T Consensus 339 ~~sl~~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~ 387 (388)
T PRK07811 339 VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVG-----IEDVADLLADLEQALG 387 (388)
T ss_pred CcceEeCCcccCcccCCHhhcCCCCCEEEEEeC-----CCCHHHHHHHHHHHhh
Confidence 11 1 123456554 2789999999999875
No 207
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=81.84 E-value=29 Score=29.00 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---C-CCeeeEEEEeccc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---F-PVGIHICITHMHT 79 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~-P~~ihi~v~~~h~ 79 (143)
.+..+.+.+.+.++.+++++++ ++-+..+..|=|-+....-....+.+.|.++|-.+=... . +..+||+|...
T Consensus 262 ~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~aNFvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~-- 338 (356)
T COG0079 262 EESVERIREERERLYAALKALG-LFGVFPSQANFVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGTP-- 338 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcEEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCH--
Confidence 4566778889999999999996 553334446666666543115579999999997664442 2 33789988642
Q ss_pred ChhHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELA 96 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~ 96 (143)
+--++|++-|++.+.
T Consensus 339 --een~~ll~AL~~~~~ 353 (356)
T COG0079 339 --EENDRLLAALREVLK 353 (356)
T ss_pred --HHHHHHHHHHHHHHh
Confidence 334999988887754
No 208
>PRK07324 transaminase; Validated
Probab=81.73 E-value=28 Score=28.70 Aligned_cols=82 Identities=9% Similarity=-0.018 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhCCCeeEeccCce--eEEEEecCCCCHHHHHHHH-hhcCceecCCC---CCCeeeEEEEecccChhHH
Q psy10208 11 IETVKYIEKELRSMDGLFIFGTPAT--SVIALGSDVFHIYRLSSGL-NKRGWNTNSLQ---FPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vlg~p~l--~vVaf~~~~~~i~~l~d~L-~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~~ 84 (143)
.+..+.+.+.+++.+++... .|.- -.+.+-....+..+++++| ++.|..+.... .+..+||++.. .++.+
T Consensus 282 ~~~~~~l~~~l~~~~~~~~~-~p~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~---~~~~l 357 (373)
T PRK07324 282 RTNLAILDEWVAKEPRVSYV-KPKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC---DTETL 357 (373)
T ss_pred HHHHHHHHHHHhcCCCceEE-CCCceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecC---CHHHH
Confidence 33456677778887777754 3432 2222222346778899886 57798876643 35678888763 24666
Q ss_pred HHHHHHHHHHHH
Q psy10208 85 DKFISDVREELA 96 (143)
Q Consensus 85 ~~fl~Dl~~ai~ 96 (143)
.+-++-|++.+.
T Consensus 358 ~~~l~rl~~~l~ 369 (373)
T PRK07324 358 KKGLKKLSEFLR 369 (373)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 209
>PRK08175 aminotransferase; Validated
Probab=81.43 E-value=29 Score=28.70 Aligned_cols=87 Identities=7% Similarity=-0.009 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC----CCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEEe
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV----FHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICITH 76 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~----~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~~ 76 (143)
.+...+..+.+.+.|+++ |+.+......+-+-+..+. .+..++.++|. +.|..+.... .+..+||++.
T Consensus 293 ~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~- 370 (395)
T PRK08175 293 AEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI- 370 (395)
T ss_pred HHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-
Confidence 344456667888889888 6765433345555555432 25678888765 6798777642 1346888875
Q ss_pred cccChhHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. ..+.+.+.++.|++.+..
T Consensus 371 -~-~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 371 -E-NRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred -C-CHHHHHHHHHHHHHHHHh
Confidence 2 357777788888777754
No 210
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=81.40 E-value=17 Score=30.66 Aligned_cols=90 Identities=7% Similarity=0.012 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEe-ccC---ceeEEEEecCC-CCHHHHHHHHhhcCc-eecCCCCCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIF-GTP---ATSVIALGSDV-FHIYRLSSGLNKRGW-NTNSLQFPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vl-g~p---~l~vVaf~~~~-~~i~~l~d~L~~rGW-~v~~~~~P~~ihi~v~ 75 (143)
|-.++.++..+.++.|++.|++.+||... .+| ....|+|+..+ .-.-++....+++|- .+..+....++|+++-
T Consensus 262 Gl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~y 341 (364)
T PRK12462 262 GVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLY 341 (364)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcC
Confidence 66777888889999999999999978764 333 35567888543 223466777788996 4566667788999998
Q ss_pred ecccChhHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVR 92 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~ 92 (143)
+.+. .+-++.+++-++
T Consensus 342 na~~-~e~v~~L~~fm~ 357 (364)
T PRK12462 342 NAVS-EQAVSRLCAFLK 357 (364)
T ss_pred CCCC-HHHHHHHHHHHH
Confidence 7665 345555554443
No 211
>PRK09028 cystathionine beta-lyase; Provisional
Probab=81.26 E-value=28 Score=29.59 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC---CCHHHHHHHHhh--cCceec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV---FHIYRLSSGLNK--RGWNTN 62 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~---~~i~~l~d~L~~--rGW~v~ 62 (143)
-++++..++|+.+++.|++.|.++-+.-|. -.+|+|..+. .....+.+.|+- .|+.+.
T Consensus 258 lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG 337 (394)
T PRK09028 258 VRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWG 337 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccC
Confidence 357778889999999999988876553331 3589998752 234566666652 233221
Q ss_pred CC----CCC----------------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SL----QFP----------------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~----~~P----------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.. ..| .-+|++|- -|..+.+++||..+++.+++
T Consensus 338 ~~~sLv~~p~~~~~~~~~~~~~~~~~liR~svG-----lEd~~dLi~Dl~~Al~~~~~ 390 (394)
T PRK09028 338 GFESLILGVFGINKLRTATNWDFSKPLIRLHIG-----LEDVDDLIADLEAGFERYNA 390 (394)
T ss_pred CCcceeECCCCcCccCchhhhcCCCCeEEEEeC-----cCCHHHHHHHHHHHHHHHHH
Confidence 11 011 12455554 27899999999999988765
No 212
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=81.20 E-value=13 Score=30.55 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhh-CCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 6 TTRSIIETVKYIEKELRS-MDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~-i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
..+++.+..++++++|++ ++++..+.+ +...++.+.... +...+.+.|.++|=.+... .+..+|++... ..+++
T Consensus 288 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~-~~~~~~~~l~~~gv~v~~~-g~~~lRi~p~~-~~~~~ 364 (377)
T PRK02936 288 FLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE-EVAPVIEQLREEGLLVLSA-GPNVIRLLPPL-VVTKE 364 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc-hHHHHHHHHHHCCeEEecC-CCCEEEEECCc-ccCHH
Confidence 445666777888888776 333333322 233445554432 2557888999999544322 23456766533 33467
Q ss_pred HHHHHHHHHHHH
Q psy10208 83 VADKFISDVREE 94 (143)
Q Consensus 83 ~~~~fl~Dl~~a 94 (143)
.++++++-|+++
T Consensus 365 ~i~~~i~~l~~~ 376 (377)
T PRK02936 365 ELDQAVYLLKKV 376 (377)
T ss_pred HHHHHHHHHHHh
Confidence 788888777664
No 213
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=80.95 E-value=28 Score=28.70 Aligned_cols=87 Identities=9% Similarity=0.039 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhCC-Cee-Eecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 8 RSIIETVKYIEKELRSMD-GLF-IFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~-g~~-vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
+++.+..+++.++++++. .+. ++++ +.-..+.+... .+..+++++|.++|-.+... .+..+|++... ..+++.
T Consensus 298 ~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~-~~~~~~~~~l~~~GV~~~p~-~~~~lR~~p~~-~~~~~~ 374 (389)
T PRK01278 298 DNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCV-VPNRDLVQALRDEGLLTVGA-GDNVVRLLPPL-IITEEE 374 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEe-cCHHHHHHHHHHCCeEEeec-CCCEEEEeCCc-ccCHHH
Confidence 444555666777766531 111 2222 22233333332 24678899999999766432 23456766533 235688
Q ss_pred HHHHHHHHHHHHHH
Q psy10208 84 ADKFISDVREELAI 97 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~ 97 (143)
++++++-|+++++.
T Consensus 375 i~~~l~~l~~~l~~ 388 (389)
T PRK01278 375 IDEALERLERAAES 388 (389)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988888754
No 214
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=80.77 E-value=1.9 Score=35.80 Aligned_cols=53 Identities=15% Similarity=0.382 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhCCCeeEecc-Cc-eeEEEEecCCCCHHHHHHHHhhcCceecC
Q psy10208 9 SIIETVKYIEKELRSMDGLFIFGT-PA-TSVIALGSDVFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~i~g~~vlg~-p~-l~vVaf~~~~~~i~~l~d~L~~rGW~v~~ 63 (143)
.=++.|+|+.+++++|+|++-+|+ |. --++-|..+. .++++..-.++|+.+.-
T Consensus 283 eEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~--f~eIakk~~r~gyFlY~ 337 (382)
T COG1103 283 EEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPV--FHEIAKKHKRKGYFLYE 337 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCch--HHHHHHhCcCCceeeHH
Confidence 346789999999999999999997 63 4567787776 45788887778877754
No 215
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.37 E-value=11 Score=26.36 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHhhcCceecCCCCCCee----eEEEEecccChhHHHHHHHHHHHHHHHHHcC--CCCCCCChhhHH
Q psy10208 43 DVFHIYRLSSGLNKRGWNTNSLQFPVGI----HICITHMHTQPGVADKFISDVREELAIIMQN--PGLQLEGVMAMY 113 (143)
Q Consensus 43 ~~~~i~~l~d~L~~rGW~v~~~~~P~~i----hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~--p~~~~~~~a~~Y 113 (143)
++.|-.+|.++|+++|+..-.+..-.+. .-+++ .-++++.++.++.-|++.++...+. |....+++|.-|
T Consensus 9 qd~da~~l~~~L~d~~fraTkLAsTGGFlkaGNTTfl-iGved~~vd~~~s~Ike~C~~req~v~~~~~~~~sa~~y 84 (109)
T COG3870 9 QDQDANELEDALTDKNFRATKLASTGGFLKAGNTTFL-IGVEDDRVDALRSLIKENCKSREQLVTPISPMGGSADSY 84 (109)
T ss_pred ecccHHHHHHHHHhCCceeEEeeccCceeecCCeEEE-EecccchhHHHHHHHHHHhhhHhhccCCCCccCCCCCcc
Confidence 3557789999999999987665433322 23444 2456788999999999998877763 333445556555
No 216
>PRK08637 hypothetical protein; Provisional
Probab=80.17 E-value=20 Score=29.71 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=48.7
Q ss_pred HHHHHHhhC---CCeeEeccCceeEEEE-ecCCCCHHHHHHHH-hhcCceecCCCCCCeeeEEEEecccChhHHHHHHHH
Q psy10208 16 YIEKELRSM---DGLFIFGTPATSVIAL-GSDVFHIYRLSSGL-NKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISD 90 (143)
Q Consensus 16 ~l~~~i~~i---~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L-~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~D 90 (143)
.+.+.+++. +++.+. .|+-..+.| +.+..|-.++.+.| +++|..+... .+..+|+++... +.+.+++.++-
T Consensus 304 ~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~-~~~~iRi~~~~~--~~~~i~~~~~~ 379 (388)
T PRK08637 304 KTKEVLYDGKYDDAWQAY-PFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIAL-NETDLRIAFSCV--EEEDIPELFDS 379 (388)
T ss_pred HHHHHHHhhCCCCCcccc-cccceEEEEecCChHHHHHHHHHHhhhcceEEEec-cCCceEEEeecC--CHHHHHHHHHH
Confidence 344555554 245543 344445555 44444556788888 4678877532 345699999753 34778888888
Q ss_pred HHHHHHHH
Q psy10208 91 VREELAII 98 (143)
Q Consensus 91 l~~ai~~~ 98 (143)
|++++..+
T Consensus 380 l~~~~~~~ 387 (388)
T PRK08637 380 IYKAIKDL 387 (388)
T ss_pred HHHHHHhc
Confidence 88877654
No 217
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=79.87 E-value=32 Score=28.19 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
..+...+.++.+.+.|++. |+.+........+-+.. +.++-.++.+.| +++|..+.... .+..+|+++.
T Consensus 292 ~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~ 367 (383)
T TIGR03540 292 IRKIYQRRRDLLLEALKKI-GIDVEKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT 367 (383)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEecCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec
Confidence 3445567788888999998 78766433322233333 366778899887 56898776542 1346888885
No 218
>PRK06105 aminotransferase; Provisional
Probab=79.67 E-value=22 Score=30.71 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecC-----CCC-----HHHHHHHHhhcCceecCCCCCCeee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSD-----VFH-----IYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~-----~~~-----i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
..+++-+..++|.++|+++..+.++++. -+..+-|..+ .++ ...+..++.++|-.+... +-.
T Consensus 347 l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~----g~~ 422 (460)
T PRK06105 347 LVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM----GDT 422 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec----CCE
Confidence 4566777888888888887444444442 2223334322 111 246778888999776432 224
Q ss_pred EEEEecc-cChhHHHHHHHHHHHHHHHHHc
Q psy10208 72 ICITHMH-TQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 72 i~v~~~h-~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.++|++ ++++.++++++-|.++++.+..
T Consensus 423 i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 423 LAFCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred EEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 5567766 4689999999999999988765
No 219
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=79.46 E-value=33 Score=30.09 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCC-----CC-----HHHHHHHHhhcCceecCCCCCCeee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDV-----FH-----IYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~-----~~-----i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
+.+++.+..++|.++|+++....++++ .-+-.|-|..+. ++ ...+...|.++|-.+.... . +
T Consensus 389 l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g--~--~ 464 (504)
T PLN02760 389 IPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG--D--N 464 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC--C--E
Confidence 456677778888888887644333333 333334454321 11 2356788889997664322 2 3
Q ss_pred EEEEecc-cChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMH-TQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~h-~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+.++|+- ++++.++++++-+++++..+.
T Consensus 465 lrl~Ppl~it~eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 465 IMMSPPLIITPEEVDELISIYGKALKATE 493 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556552 357899999998888887764
No 220
>PRK07480 putative aminotransferase; Validated
Probab=79.29 E-value=34 Score=29.48 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=57.0
Q ss_pred HHHH-HHHHHHHHHHHhhCCCeeEe----ccCceeEEEEecCC-----C-C----HHHHHHHHhhcCceecCCCCCCeee
Q psy10208 7 TRSI-IETVKYIEKELRSMDGLFIF----GTPATSVIALGSDV-----F-H----IYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 7 ~~~~-~~~a~~l~~~i~~i~g~~vl----g~p~l~vVaf~~~~-----~-~----i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
.+++ -+..++|.++|+++..+.++ |..-+.-|-|..+. + + ...+..+|.++|-.+.. .+-+
T Consensus 346 ~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~----~~~~ 421 (456)
T PRK07480 346 VERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRA----VGDR 421 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEee----cCCE
Confidence 3444 35667788888775443333 33444555564321 1 1 13566788899976643 1234
Q ss_pred EEEEeccc-ChhHHHHHHHHHHHHHHHHHc
Q psy10208 72 ICITHMHT-QPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 72 i~v~~~h~-~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.++|+++ +++.++++++-|.+++..++.
T Consensus 422 l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 422 MIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66778775 689999999999999988754
No 221
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=79.11 E-value=34 Score=28.89 Aligned_cols=51 Identities=4% Similarity=-0.014 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCc-eecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 47 IYRLSSGLNKRGW-NTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 47 i~~l~d~L~~rGW-~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
...+..++.++|- .++....+..+|++... ..+.+.+++.++-|+++++..
T Consensus 373 ~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~-~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 373 TAQIVARARDKGLILLSCGPYYNVLRILVPL-TIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred HHHHHHHHHhCCCEEecCCCCCCEEEEECCC-CcCHHHHHHHHHHHHHHHHhh
Confidence 5678899999994 44433446677887754 445688999999999888654
No 222
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=79.06 E-value=37 Score=28.42 Aligned_cols=96 Identities=5% Similarity=-0.013 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC-----CC-CHHHHHH-HHhhcCceecCCC---CCCeee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD-----VF-HIYRLSS-GLNKRGWNTNSLQ---FPVGIH 71 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~-----~~-~i~~l~d-~L~~rGW~v~~~~---~P~~ih 71 (143)
|.+..+.+.+..+++.+.|++++++.....|+-.-+.|- .+ ++ +-.++.. .+.++|=.+.... .+..+|
T Consensus 302 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iR 381 (409)
T PLN00143 302 FSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLR 381 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEE
Confidence 345566666677778888888865443445655455543 22 12 4455554 4478898766532 356799
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
|++... .+.+++-++-|++.+..-.+.
T Consensus 382 i~~~~~---~~~l~~al~rl~~~l~~~~~~ 408 (409)
T PLN00143 382 ITFAVE---QSSLEDGLGRLKSFCGRHAKK 408 (409)
T ss_pred EEEcCC---HHHHHHHHHHHHHHHHHhccC
Confidence 999742 466777777777766544433
No 223
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=78.89 E-value=8 Score=32.96 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=64.4
Q ss_pred cCceeEEEEecCCCCHHHHHHHHhhcCceecCC------CCCCe-e--------eEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 32 TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL------QFPVG-I--------HICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 32 ~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~------~~P~~-i--------hi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
|.+.-+|++.+..-.+.+..+.||++|..+... ++|.. + +++|.-...+.+.-..+..|++.++-
T Consensus 261 DAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~ 340 (394)
T PRK08367 261 DAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALV 340 (394)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHh
Confidence 578889999987767888999999999876553 44442 1 34444334333444667888988885
Q ss_pred HHHcCCCCCCCChhhHHhhhccCCCcchHHHHHHHHHH
Q psy10208 97 IIMQNPGLQLEGVMAMYGKSHSIPDRSIIGDFTRYYID 134 (143)
Q Consensus 97 ~~~~~p~~~~~~~a~~Yg~~~~ipd~~~v~~~~~~~~d 134 (143)
.....|.. .--+||+.+.-+..+-+.+++.+.++
T Consensus 341 ~~~~~~~v----~~~~~glgg~~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 341 NESEKPKI----LDFIIGLGGRDVTFKQLDEALEIAEK 374 (394)
T ss_pred ccCCCCeE----EEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 43322211 12467888887777666666666654
No 224
>PRK05965 hypothetical protein; Provisional
Probab=78.75 E-value=35 Score=29.41 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecC-----CCC-----HHHHHHHHhhcCceecCCCCCCeee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSD-----VFH-----IYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~-----~~~-----i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
..+++-+...+|.++|+++..+.++++. -+-.|-|..+ .++ ...+...+.++|-.+.... . --
T Consensus 344 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g-~--~~ 420 (459)
T PRK05965 344 LLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG-D--GV 420 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC-C--cE
Confidence 3455667778888888776433344442 2223334322 111 2356777889997764321 1 22
Q ss_pred EEEEeccc-ChhHHHHHHHHHHHHHHHHHcCCCC
Q psy10208 72 ICITHMHT-QPGVADKFISDVREELAIIMQNPGL 104 (143)
Q Consensus 72 i~v~~~h~-~~~~~~~fl~Dl~~ai~~~~~~p~~ 104 (143)
+.++|+.+ +++.++++++-|.+++..+..+|+.
T Consensus 421 i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~~~~ 454 (459)
T PRK05965 421 LGFAPALCCTEGEFDLIFERTRKTLDDVLADPDV 454 (459)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHHHHHhcCcch
Confidence 55555543 6799999999999999999777753
No 225
>PRK06234 methionine gamma-lyase; Provisional
Probab=78.51 E-value=23 Score=29.79 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhhc--CceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNKR--GWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~r--GW~v~~ 63 (143)
.+.++..++++++++.|++.|.+.-+.-|. -.+++|..++ -....+.+.|+-. |+.+..
T Consensus 265 ~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~ 344 (400)
T PRK06234 265 IRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGD 344 (400)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCC
Confidence 466777889999999999988776554332 3478888752 2345677777643 443322
Q ss_pred CC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 64 LQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 64 ~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. .| .-+|++|- -+..+.+++||+.|++.+
T Consensus 345 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-----lE~~~dl~~dl~~al~~~ 398 (400)
T PRK06234 345 AETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVG-----LEDVDDIIADLKQALDLI 398 (400)
T ss_pred CCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC-----CCCHHHHHHHHHHHHHHH
Confidence 10 11 12455554 378999999999999865
No 226
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=78.43 E-value=30 Score=28.85 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC-CCHHHHHHHHhh--cCceecC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV-FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~-~~i~~l~d~L~~--rGW~v~~ 63 (143)
....++..++++++++.|++.|+++-+.-|. -.+|+|..++ .....+.+.|+- .|+.+..
T Consensus 250 ~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l~~~~~~~s~G~ 329 (380)
T TIGR01325 250 SLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDAVELVSITNNLGD 329 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEcccCCC
Confidence 3457788899999999999998877543232 3589998752 224566666643 3443321
Q ss_pred C----C---------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 64 L----Q---------F-----------PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 64 ~----~---------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
. . . |.-+|++|-- +..+.+++||++++
T Consensus 330 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al 380 (380)
T TIGR01325 330 AKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVGL-----EDVDDLIADLKRAL 380 (380)
T ss_pred CCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHhhC
Confidence 1 0 1 1235665542 78999999998873
No 227
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=78.34 E-value=22 Score=30.81 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecCC-----C--C--H-HHHHHHHhhcCceecCCCCCCeee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSDV-----F--H--I-YRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~~-----~--~--i-~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
+.+++.+..++|.++|+++..+..+++. -+-.|-|..++ + + . -.+..++.++|-.+... +-.
T Consensus 344 l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----g~~ 419 (466)
T PRK07030 344 VIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL----GSV 419 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec----CCE
Confidence 4556667778888888776433334432 22223333221 1 1 1 35778888999766432 224
Q ss_pred EEEEec-ccChhHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHM-HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 72 i~v~~~-h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+.++|+ .++++.++.+++-++++++++
T Consensus 420 i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 420 VYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 556644 346899999999999999998
No 228
>PRK07671 cystathionine beta-lyase; Provisional
Probab=78.24 E-value=15 Score=30.68 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC-CCHHHHHHHHh--hcCceecCC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV-FHIYRLSSGLN--KRGWNTNSL 64 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~-~~i~~l~d~L~--~rGW~v~~~ 64 (143)
..+++..++++.|++.|++.|++.-+--|. -.+|+|...+ -....+.++|+ ..|+.+...
T Consensus 247 ~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~l~~~~~s~G~~ 326 (377)
T PRK07671 247 IRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFTLAESLGAV 326 (377)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhCCcceEccCCCCC
Confidence 356777899999999999998876554332 3588888742 23455566665 335444322
Q ss_pred C-------------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 65 Q-------------F-----------PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 65 ~-------------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
. + +.-+|++|-- |..+.+++||+.|+
T Consensus 327 ~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al 376 (377)
T PRK07671 327 ESLISIPSQMTHASIPADRRKELGITDGLIRISVGI-----EDGEDLIEDLAQAL 376 (377)
T ss_pred CeEeECCCccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHh
Confidence 1 0 1124665543 78999999999886
No 229
>PRK08297 L-lysine aminotransferase; Provisional
Probab=78.23 E-value=21 Score=30.57 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHhhC----CCe--eEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecc
Q psy10208 6 TTRSIIETVKYIEKELRSM----DGL--FIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i----~g~--~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h 78 (143)
+.+++.+..+++.++|+++ |.+ .+-|.. .++++...+ .....+...|.++|..+... ....++++... .
T Consensus 347 l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G--~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~~lr~~P~l-~ 422 (443)
T PRK08297 347 LVENAARQGEYLLARLEELAAEFPAVVSNVRGRG--LMCAFDLPTTADRDEVIRRLWEEGVLVLPC-GERSIRFRPAL-T 422 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccc--eEEEEEecCHHHHHHHHHHHHHCCEEEecC-CCCeEEEECCc-c
Confidence 4456667777788877664 322 333432 344444322 12346788888999877432 12334554332 2
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAII 98 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+++.++.+++-|++++.++
T Consensus 423 ~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 423 VTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 35789999999999988765
No 230
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=78.19 E-value=20 Score=30.08 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCCC---CHHHHHHHHhhc--CceecC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDVF---HIYRLSSGLNKR--GWNTNS 63 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~~---~i~~l~d~L~~r--GW~v~~ 63 (143)
.+++..++|+.+++.|++.|.++-+.-|. ..+++|..++. ....+.+.|+-. |+.+..
T Consensus 248 R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~ 327 (377)
T TIGR01324 248 RLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGG 327 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCC
Confidence 46677788888999999887765443331 46788887532 356777777753 333221
Q ss_pred C----CCC----------------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 64 L----QFP----------------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 64 ~----~~P----------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. .+| .-+|++|- -|..+.+++||..+++.
T Consensus 328 ~~sl~~~~~~~~~~~~~~~~~~~~~liR~svG-----lE~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 328 YESLALCNQPELGHRPNIKRNLEGPLIRVHIG-----LENVDDLKADLKAGFEA 376 (377)
T ss_pred ccceeecCCCCCCHHHHHhccCCCCEEEEEeC-----CCCHHHHHHHHHHHHhc
Confidence 1 001 12455554 37899999999999864
No 231
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=78.08 E-value=23 Score=29.98 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+.+++.+..+++.++|+++. .+.++++ .-+--|-|..+ .-....+.+.|.++|-.+... .+..+|++. +..+
T Consensus 308 l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~-g~~~lRl~P-pl~i 385 (408)
T PRK04612 308 IAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQA-GPDVLRFVP-ALNL 385 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeC-CCCEEEEcC-CccC
Confidence 45566667788888887752 2334443 22222333221 112456788899999766432 234456533 2344
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+.+.++++++-+++++..+.
T Consensus 386 t~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 386 TDAELADGLARLRLALADYV 405 (408)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999987654
No 232
>PRK07681 aspartate aminotransferase; Provisional
Probab=77.97 E-value=38 Score=28.03 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ec-CCCCHHHHHHHHhh-cCceecCCC-----CCCeeeEEEEecc
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GS-DVFHIYRLSSGLNK-RGWNTNSLQ-----FPVGIHICITHMH 78 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~-~~~~i~~l~d~L~~-rGW~v~~~~-----~P~~ihi~v~~~h 78 (143)
.+.+.+..+.+.+.|++. |+++.. |.-..+.| .. +.++-.++++.|.+ .|-.+.... .+..+|+++..
T Consensus 295 ~~~~~~~~~~l~~~L~~~-g~~~~~-p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-- 370 (399)
T PRK07681 295 RGIYQERRDTLVDGFRTF-GWNVDK-PAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-- 370 (399)
T ss_pred HHHHHHHHHHHHHHHHHC-CCcccC-CCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC--
Confidence 344456677788999987 777543 43333333 22 35677788888876 898775532 13468888873
Q ss_pred cChhHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVRE 93 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ 93 (143)
..+.++++++-|++
T Consensus 371 -~~~~~~~~l~~l~~ 384 (399)
T PRK07681 371 -DEEVLQQAVENIRN 384 (399)
T ss_pred -CHHHHHHHHHHHHH
Confidence 23566666666655
No 233
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=77.84 E-value=42 Score=28.41 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTN 62 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~ 62 (143)
...++...+++..+++.|++.|.++-+.-|. -.+|+|..++ .....+.+.|+- .|+.+.
T Consensus 257 ~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~s~G 336 (405)
T PRK08776 257 DARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFTLAESLG 336 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCcceEccCCC
Confidence 3466788899999999999998887554332 3489998753 224566777763 344332
Q ss_pred CC-------------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SL-------------QF-----------PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~-------------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.. .. +.-+|++|- -|.++.+++||+.+++.+.+
T Consensus 337 ~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svG-----lE~~~dli~dl~~al~~~~~ 393 (405)
T PRK08776 337 GVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVG-----IESAEDLLIDLRAGLARAEA 393 (405)
T ss_pred CCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHHHHHhHH
Confidence 21 01 112455554 37899999999999987654
No 234
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=77.60 E-value=36 Score=27.58 Aligned_cols=69 Identities=9% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEE-EecC-CCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEE
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIA-LGSD-VFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICIT 75 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVa-f~~~-~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~ 75 (143)
+..+.+.+..+.+.+.+++. |+++. .|.-+.+. +..+ ..+..++.++|.++|..+.... + +..+||++.
T Consensus 259 ~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~g~~~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~ 334 (350)
T TIGR03537 259 ERRKIFKRKRDLFIEFFNKV-GLEYL-YPDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV 334 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCccc-CCCeEEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec
Confidence 34455566667778888887 77644 56555433 3333 4577899999999999886432 2 456888875
No 235
>PLN02624 ornithine-delta-aminotransferase
Probab=77.58 E-value=24 Score=30.45 Aligned_cols=88 Identities=11% Similarity=0.123 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhC----CC-ee-EeccCceeEEEEecCC---CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecc
Q psy10208 8 RSIIETVKYIEKELRSM----DG-LF-IFGTPATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i----~g-~~-vlg~p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h 78 (143)
+++-+..+++.++++++ +. +. +-|...+..|-|..+. ....++++.|.++|-.+... .+..+||+... .
T Consensus 348 ~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~-~~~~lR~~p~l-~ 425 (474)
T PLN02624 348 ERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPT-HDTIIRLAPPL-S 425 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecC-CCCEEEEECCc-c
Confidence 34455567777777664 21 21 1122223233343322 23568899999999666432 34457776543 3
Q ss_pred cChhHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAI 97 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~ 97 (143)
.+++.++++++-|+++++.
T Consensus 426 ~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 426 ISEDELQECSKALSDVLEH 444 (474)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4578899999888877653
No 236
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=77.24 E-value=25 Score=30.34 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEecc----CceeEEEEecCCC--C---HHHHHHHHhhcCceecCCCC-CCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIFGT----PATSVIALGSDVF--H---IYRLSSGLNKRGWNTNSLQF-PVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vlg~----p~l~vVaf~~~~~--~---i~~l~d~L~~rGW~v~~~~~-P~~ihi~v 74 (143)
..++..+..++|.++|+++ .++.++++ .-+.-+.|..+.. + ...+.+.|.++|-.+..... +..+|+.-
T Consensus 342 l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~P 421 (457)
T PRK05639 342 LLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITP 421 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeC
Confidence 3455666788888888874 23444443 3333444533210 1 24677888899977754322 33455544
Q ss_pred EecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 75 THMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.. .++++.++++++-|+++++.+..
T Consensus 422 pl-~it~~~id~~~~~l~~~l~~~~~ 446 (457)
T PRK05639 422 PL-VITKEIAEKGLEIMERAIKDALA 446 (457)
T ss_pred CC-ccCHHHHHHHHHHHHHHHHHHHH
Confidence 32 33578999999999999988753
No 237
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=77.22 E-value=39 Score=29.12 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecCC----CC---HHHHHHHHhhcCceecCCCCCCeeeEE
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSDV----FH---IYRLSSGLNKRGWNTNSLQFPVGIHIC 73 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~~----~~---i~~l~d~L~~rGW~v~~~~~P~~ihi~ 73 (143)
..++..+..++|.++|+++. .+.++++ .-+--|-|..+. .+ .-.+...+.++|-.+... .+-.+.
T Consensus 350 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---~~~~i~ 426 (459)
T PRK06082 350 LLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS---QGNVIQ 426 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec---CCCEEE
Confidence 45566777888888887752 2333333 333334443221 11 235667788899766432 123466
Q ss_pred EEeccc-ChhHHHHHHHHHHHHHHHHHc
Q psy10208 74 ITHMHT-QPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 74 v~~~h~-~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++|+++ +++.++++++-+++++.++.+
T Consensus 427 ~~Ppl~it~~eid~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 427 LSPPLIITREELTQALAILEEAIAKICQ 454 (459)
T ss_pred EeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence 777764 689999999999999988743
No 238
>PRK06434 cystathionine gamma-lyase; Validated
Probab=77.10 E-value=17 Score=30.72 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------eeEEEEecCC-CCHHHHHHHHhh--cCceecCCC----
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------TSVIALGSDV-FHIYRLSSGLNK--RGWNTNSLQ---- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------l~vVaf~~~~-~~i~~l~d~L~~--rGW~v~~~~---- 65 (143)
-.++++-.++++.+++.|++.|.++-+.-|. -.+++|..++ .+...+.+.|+- .|+.+....
T Consensus 258 ~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~l~~~~~slG~~~sl~~ 337 (384)
T PRK06434 258 GLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRSMEDVHKFIRNLEIPMVAASLGGVESLIT 337 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECCHHHHHHHHHhCCcceEccCCCCCCeeeE
Confidence 3566777889999999999998876554443 3578988753 345566677762 455443310
Q ss_pred ---------CC-----------CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 66 ---------FP-----------VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 66 ---------~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+| .-+|++|- -|.++.+++||++|++
T Consensus 338 ~p~~~~h~~~~~e~~~~~gi~~~liRlsvG-----lEd~~dLi~dl~~Al~ 383 (384)
T PRK06434 338 LPVETSHSSLSPEERERLGISDNLVRFSIG-----IEDIDDLIKDIENALS 383 (384)
T ss_pred CCCccccccCCHHHHHhcCCCcCeEEEEeC-----cCCHHHHHHHHHHHhc
Confidence 11 12455554 3789999999999874
No 239
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=76.80 E-value=46 Score=28.33 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhhC----CCe-eEeccCceeEEEEecCC---CC---HHHHHHHHhhcCceecCCCCCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSM----DGL-FIFGTPATSVIALGSDV---FH---IYRLSSGLNKRGWNTNSLQFPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i----~g~-~vlg~p~l~vVaf~~~~---~~---i~~l~d~L~~rGW~v~~~~~P~~ihi~v 74 (143)
+.+++.+..++|.++++++ |.+ ++-|..-+--+-|..+. -+ ...+...|.++|-.+... .+.+-++.+
T Consensus 319 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-g~~~~~~r~ 397 (425)
T PRK07495 319 LCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTC-GVHGNVIRF 397 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec-CCCCCEEEE
Confidence 3445555667777777654 221 22233223334443321 11 235778888999877432 222334666
Q ss_pred Eeccc-ChhHHHHHHHHHHHHHHHHHc
Q psy10208 75 THMHT-QPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 75 ~~~h~-~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+|+-+ +++.++++++-|+++++.++.
T Consensus 398 ~Ppl~it~~~id~~~~~l~~~l~~~~~ 424 (425)
T PRK07495 398 LAPITIQDDVFAEALDILEASILEASA 424 (425)
T ss_pred eCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 76554 689999999999999988764
No 240
>PLN02187 rooty/superroot1
Probab=76.53 E-value=49 Score=28.45 Aligned_cols=94 Identities=6% Similarity=0.025 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC-----CC-CHHHHHHH-HhhcCceecCCC---CCCeeeEE
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD-----VF-HIYRLSSG-LNKRGWNTNSLQ---FPVGIHIC 73 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~-----~~-~i~~l~d~-L~~rGW~v~~~~---~P~~ihi~ 73 (143)
+..+.+.+..+.+.+.|++++++.....|+-..+.|- .+ ++ +-.++... +.+.|-.+.... .+..+||+
T Consensus 338 ~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis 417 (462)
T PLN02187 338 KKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRIT 417 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEE
Confidence 3445556667788899999865543445654344442 21 22 44455554 478897765432 35679999
Q ss_pred EEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 74 ITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+... ++.+++-++-|++.++...+.
T Consensus 418 ~~~~---~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 418 IGVE---AHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred eCCC---HHHHHHHHHHHHHHHHHhhhc
Confidence 9742 578888888888888655544
No 241
>PLN02242 methionine gamma-lyase
Probab=76.43 E-value=39 Score=28.78 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEecc-----C--------------ceeEEEEecCC-CCHHHHHHHHh------hcC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGT-----P--------------ATSVIALGSDV-FHIYRLSSGLN------KRG 58 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~-----p--------------~l~vVaf~~~~-~~i~~l~d~L~------~rG 58 (143)
..+++..++++++++.|++. ++++... | --.+|+|...+ -....+.+.|+ ..+
T Consensus 278 ~r~~~~~~~a~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~~~ 356 (418)
T PLN02242 278 LRMKEHCRRAMEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMA 356 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhhcccccceee
Confidence 45567788999999999998 5777621 1 23688988753 23456677776 334
Q ss_pred ceecCC----CCC--------------------CeeeEEEEecccChh-HHHHHHHHHHHHHHHHH
Q psy10208 59 WNTNSL----QFP--------------------VGIHICITHMHTQPG-VADKFISDVREELAIIM 99 (143)
Q Consensus 59 W~v~~~----~~P--------------------~~ihi~v~~~h~~~~-~~~~fl~Dl~~ai~~~~ 99 (143)
+.+... +.| .-+|++|- -+ .++.+++||+.|++..+
T Consensus 357 ~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-----lE~~~~dli~dl~~al~~~~ 417 (418)
T PLN02242 357 VSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVG-----YTGTLEQRWSQFEKALSAMK 417 (418)
T ss_pred ecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-----CCCCHHHHHHHHHHHHHHhh
Confidence 433221 112 12344443 36 49999999999998754
No 242
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=76.41 E-value=43 Score=27.80 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEEeccc
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICITHMHT 79 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~~~h~ 79 (143)
.+...+..+.+.+.|++. |+++......+-+-++.+ .+|..++.+.|. +.|+.+.... .+..+||++..
T Consensus 311 ~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~--- 386 (402)
T TIGR03542 311 ISYYMENARILRKALEAA-GFKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG--- 386 (402)
T ss_pred HHHHHHHHHHHHHHHHhc-CceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC---
Confidence 344456667788888886 677653333444444543 467778888876 5799887643 13568888643
Q ss_pred ChhHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREE 94 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~a 94 (143)
+++.+++-++.|+++
T Consensus 387 ~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 387 KRENIVEACERIKEA 401 (402)
T ss_pred CHHHHHHHHHHHHhh
Confidence 235555555555543
No 243
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=75.18 E-value=15 Score=24.79 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHhh-cCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCCCCCCCC-hhhHHhhhccCCC
Q psy10208 44 VFHIYRLSSGLNK-RGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEG-VMAMYGKSHSIPD 121 (143)
Q Consensus 44 ~~~i~~l~d~L~~-rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~~~~~-~a~~Yg~~~~ipd 121 (143)
.++--++...|.. -||.+.. +..|+=.+.-. +..-.-.|+..+....+....+|.-..+. ...+.=.++++-.
T Consensus 4 ~Ls~~ei~~~L~~l~~W~~~~---~~~l~r~f~f~--~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~V~v~l~Th~~~g 78 (95)
T PF01329_consen 4 PLSEEEIAEALAELPGWKLDG---GGRLERTFKFK--DFAEAVEFVNRVAALAEEENHHPDISLGYNRVTVTLTTHDAGG 78 (95)
T ss_dssp B-THHHHHHHHHTSTTSEEET---SSEEEEEEE-S--SHHHHHHHHHHHHHHHHHHT---EEEEETTEEEEEE-BTTTTB
T ss_pred CCCHHHHHHhhhcCcCCEECC---CCcEEEEEEeC--CHHHHHHHHHHHHHHHHHhCCCCCeEecCCcEEEEEEeCCCCC
Confidence 4566788888886 6999996 35565444322 23677899999999999999999653221 2222222233333
Q ss_pred cchHHHHHHHHHHhhc
Q psy10208 122 RSIIGDFTRYYIDATY 137 (143)
Q Consensus 122 ~~~v~~~~~~~~d~~y 137 (143)
-+-.|-.++..+|.+|
T Consensus 79 lT~~D~~lA~~id~~~ 94 (95)
T PF01329_consen 79 LTEKDFILAARIDDLA 94 (95)
T ss_dssp BBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4566788888888876
No 244
>PRK07481 hypothetical protein; Provisional
Probab=74.51 E-value=32 Score=29.48 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecCC-----CC-----HHHHHHHHhhcCceecCCCCCCee
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSDV-----FH-----IYRLSSGLNKRGWNTNSLQFPVGI 70 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~~-----~~-----i~~l~d~L~~rGW~v~~~~~P~~i 70 (143)
..+++.+..++|.++|+++- .+.++++ .-+--|-|..+. .+ ...+..+|.++|-.+... +-
T Consensus 342 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----g~ 417 (449)
T PRK07481 342 LPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS----GT 417 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec----CC
Confidence 44556667778888887752 2333433 333344454321 11 235677888999766432 12
Q ss_pred eEEEEeccc-ChhHHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHT-QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 71 hi~v~~~h~-~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.+.++|+++ +++.+|++++-|.+++..+.
T Consensus 418 ~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 418 KIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 356787774 68899999999999987653
No 245
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=74.42 E-value=30 Score=29.63 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc------------------eeEEEEecCC--CCHHHHHHHHhh--cCcee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA------------------TSVIALGSDV--FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~------------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v 61 (143)
-..+++--++|..+++.|++.|+++-+.-|. -++++|..++ .....+.+.|+- .|+.+
T Consensus 293 ~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~l~~~~~sl 372 (433)
T PRK08134 293 PLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANV 372 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCCcceecccc
Confidence 3566777889999999999998876543221 3578888642 335666677653 34433
Q ss_pred cCC-------------CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 62 NSL-------------QFP-----------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 62 ~~~-------------~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
... .++ .-+|++|-- |..+.+++||..|++..++
T Consensus 373 G~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl-----E~~~dli~dl~~Al~~~~~ 430 (433)
T PRK08134 373 GDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGL-----EDADDLIDDLKRALKAAEK 430 (433)
T ss_pred CCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhhhh
Confidence 111 111 124666543 7899999999999987654
No 246
>PRK08068 transaminase; Reviewed
Probab=74.34 E-value=48 Score=27.32 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEE-EecC-CCCHHHHHHHHhh-cCceecCCC-----CCCeeeEEEE
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIA-LGSD-VFHIYRLSSGLNK-RGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVa-f~~~-~~~i~~l~d~L~~-rGW~v~~~~-----~P~~ihi~v~ 75 (143)
+..+...+..+.+.+.|+++ |+.+ ..|.-..+. +..+ ..+..++++.|.+ .|..+.... .+..+|+++.
T Consensus 294 ~~~~~~~~~r~~~~~~L~~~-g~~~-~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~ 370 (389)
T PRK08068 294 ELVARYESRRNAFISACREI-GWEV-DAPKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL 370 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcc-cCCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc
Confidence 34555666677788888887 6653 456555543 3443 4677899999986 699886532 2346888885
No 247
>PLN02509 cystathionine beta-lyase
Probab=73.93 E-value=27 Score=30.40 Aligned_cols=88 Identities=16% Similarity=0.039 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC-CCHHHHHHHHh--hcCceecCC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV-FHIYRLSSGLN--KRGWNTNSL 64 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~-~~i~~l~d~L~--~rGW~v~~~ 64 (143)
.++++..++|+++++.|++.|.++-+.-|. -.+++|...+ .....+.+.|+ ..|+.+...
T Consensus 330 ~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~a~slG~~ 409 (464)
T PLN02509 330 LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSV 409 (464)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcCCcceEcccCCCC
Confidence 466778899999999999999886443221 3588997632 22445566665 234333221
Q ss_pred C-------------CC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 65 Q-------------FP-----------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 65 ~-------------~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. .+ .-+|++|- -+.++.+++||+.|++.
T Consensus 410 ~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvG-----lE~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 410 KSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-----IEDVDDLISDLDIAFRT 461 (464)
T ss_pred CceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHcc
Confidence 0 11 12455554 37899999999999753
No 248
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=73.48 E-value=52 Score=27.34 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=50.4
Q ss_pred HHHHHHHhhC-C--CeeEeccCceeEEEE-ecC--CCCHHHHHHHHhhcCceecCCC-C-----------CCeeeEEEEe
Q psy10208 15 KYIEKELRSM-D--GLFIFGTPATSVIAL-GSD--VFHIYRLSSGLNKRGWNTNSLQ-F-----------PVGIHICITH 76 (143)
Q Consensus 15 ~~l~~~i~~i-~--g~~vlg~p~l~vVaf-~~~--~~~i~~l~d~L~~rGW~v~~~~-~-----------P~~ihi~v~~ 76 (143)
+.+.+.|++. + ++.+ ..|+-..+.| ..+ .++-.++.+.|.++|..+.... + +..+||++..
T Consensus 315 ~~~~~~L~~~l~~~~~~~-~~p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~ 393 (416)
T PRK09440 315 QLAIALLRRYLPDEPCLI-HKPEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ 393 (416)
T ss_pred HHHHHHHHHhcccCCeEE-ecCCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC
Confidence 3444555442 2 3443 3454333333 333 3577889999999998776531 1 1358888863
Q ss_pred cccChhHHHHHHHHHHHHHHHHHc
Q psy10208 77 MHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.++.++++++-|+++++...+
T Consensus 394 ---~~~~l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 394 ---DDEEIEKGIAILAEEVEKAYA 414 (416)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999998876544
No 249
>PRK06348 aspartate aminotransferase; Provisional
Probab=73.37 E-value=51 Score=27.17 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC--CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEEecccCh
Q psy10208 11 IETVKYIEKELRSMDGLFIFGTPATSVIALG-SD--VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICITHMHTQP 81 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~--~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~~~h~~~ 81 (143)
.+..+.+.+.|++++++++ ..|+...+.|- .+ .++-.++++.+. +.|..+.... .+..+|+++.. ..
T Consensus 294 ~~r~~~~~~~L~~~~~~~~-~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~ 369 (384)
T PRK06348 294 QKRLEYAYKRIESIPNLSL-HPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV---GI 369 (384)
T ss_pred HHHHHHHHHHHhcCCCcee-ccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecC---CH
Confidence 3445678888888877664 45766666653 22 467788898875 5799887532 24578888852 33
Q ss_pred hHHHHHHHHH
Q psy10208 82 GVADKFISDV 91 (143)
Q Consensus 82 ~~~~~fl~Dl 91 (143)
+.+++.++-|
T Consensus 370 ~~l~~al~~l 379 (384)
T PRK06348 370 EVLEEAFNRI 379 (384)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 250
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=73.26 E-value=34 Score=29.19 Aligned_cols=90 Identities=12% Similarity=-0.004 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEe----ccCceeEEEEecCC--C-C---HHHHHHHHhhcCceecCC-CCCCeeeEE
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIF----GTPATSVIALGSDV--F-H---IYRLSSGLNKRGWNTNSL-QFPVGIHIC 73 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vl----g~p~l~vVaf~~~~--~-~---i~~l~d~L~~rGW~v~~~-~~P~~ihi~ 73 (143)
+.+++.+...+|.++|+++. .+.++ |..-+-.+-|..+. . + ...+.++|.++|-.+... ..+..+|+
T Consensus 340 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~- 418 (443)
T PRK06058 340 LVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRL- 418 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEE-
Confidence 34556666778888887752 23333 33334444453321 0 1 245677778999776542 22333444
Q ss_pred EEecc-cChhHHHHHHHHHHHHHHH
Q psy10208 74 ITHMH-TQPGVADKFISDVREELAI 97 (143)
Q Consensus 74 v~~~h-~~~~~~~~fl~Dl~~ai~~ 97 (143)
+|+. ++++.++++++-|++++++
T Consensus 419 -~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 419 -LPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred -ECCCccCHHHHHHHHHHHHHHHHh
Confidence 4333 3578999999999888764
No 251
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=73.26 E-value=38 Score=29.19 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecCC-----C--C---HHHHHHHHhhcCceecCCCCCCeee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSDV-----F--H---IYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~~-----~--~---i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
+.+++.+..+++.++|+++..+..+++. -+--+-|..+. + + -..+...|.++|-.+... +-.
T Consensus 353 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----g~~ 428 (460)
T PRK06916 353 LIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL----GNT 428 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec----CCE
Confidence 4456677788888888876433334332 22223343221 1 1 136778889999776432 234
Q ss_pred EEEEec-ccChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHM-HTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~-h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+.++|+ .++++.++++++-|+++++.+.
T Consensus 429 l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 429 IVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred EEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 556644 3468999999999999987654
No 252
>PRK06541 hypothetical protein; Provisional
Probab=72.96 E-value=41 Score=29.02 Aligned_cols=94 Identities=16% Similarity=0.035 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEe----ccCceeEEEEecCC-----CC-------H-HHHHHHHhhcCceecCCCCCC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIF----GTPATSVIALGSDV-----FH-------I-YRLSSGLNKRGWNTNSLQFPV 68 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vl----g~p~l~vVaf~~~~-----~~-------i-~~l~d~L~~rGW~v~~~~~P~ 68 (143)
..+++.+..++|.++|+++..+.++ |...+-.|-|..+. ++ . ..+...|.++|=.+..... .
T Consensus 347 ~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-g 425 (460)
T PRK06541 347 LLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDR-G 425 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCC-C
Confidence 3466777888899999887433232 44334444453321 11 1 2567888899977754221 1
Q ss_pred eeeEEEEec-ccChhHHHHHHHHHHHHHHHHHc
Q psy10208 69 GIHICITHM-HTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 69 ~ihi~v~~~-h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.-.+.++|+ .++++.++++++-|.+++..+.+
T Consensus 426 ~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 426 DPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 123444554 23578999999999999887654
No 253
>KOG1360|consensus
Probab=72.95 E-value=25 Score=30.78 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhCCCeeEeccCc--eeEEEEecCCCCHHHHHHHH-hhcCceecCCCCCCe------eeEEEEecccCh
Q psy10208 11 IETVKYIEKELRSMDGLFIFGTPA--TSVIALGSDVFHIYRLSSGL-NKRGWNTNSLQFPVG------IHICITHMHTQP 81 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vlg~p~--l~vVaf~~~~~~i~~l~d~L-~~rGW~v~~~~~P~~------ihi~v~~~h~~~ 81 (143)
..+.++++..|.++ |+-++-.|. +||- +.....+ -.++|.| ++.|-+|++...|.- +||+=+|.|+ .
T Consensus 433 qrnv~~~kq~l~~~-GiPVi~~pSHIiPv~-vgda~l~-~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT-~ 508 (570)
T KOG1360|consen 433 QRNVKYVKQLLMEL-GIPVIPNPSHIIPVR-VGDAALA-KQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHT-P 508 (570)
T ss_pred HHHHHHHHHHHHHc-CCcccCCCcceeeee-ccCHHHH-HHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCC-H
Confidence 34677888888887 898988774 3442 2211122 3556665 567999998877642 6899998884 7
Q ss_pred hHHHHHHHHHHHHHHHHHc
Q psy10208 82 GVADKFISDVREELAIIMQ 100 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~~~ 100 (143)
++++.|+++|..+-+++.-
T Consensus 509 ~mm~~lv~~l~~vw~~v~l 527 (570)
T KOG1360|consen 509 QMMNILVNALLDVWNEVGL 527 (570)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999888764
No 254
>PTZ00377 alanine aminotransferase; Provisional
Probab=72.94 E-value=60 Score=27.85 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhCCCeeEeccCceeEEEEec---C-C---------C--CHHHHHHHHhhcCceecCCC-C-----CCe
Q psy10208 11 IETVKYIEKELRSMDGLFIFGTPATSVIALGS---D-V---------F--HIYRLSSGLNKRGWNTNSLQ-F-----PVG 69 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~---~-~---------~--~i~~l~d~L~~rGW~v~~~~-~-----P~~ 69 (143)
.+..+.+.+.|++++|+++. .|+-..+.|-. . . + +...+...|+++|..+.... + +..
T Consensus 372 ~~rr~~l~~~L~~~~g~~~~-~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~ 450 (481)
T PTZ00377 372 KRRAELLTDELNKIEGVSCQ-PVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYH 450 (481)
T ss_pred HHHHHHHHHHHhcCCCcEee-cCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCE
Confidence 45567788999999888865 46555555521 1 1 0 11123466678898776532 1 236
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+|+++. ...+.+++.++-|++.++...+
T Consensus 451 ~Rls~~---~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 451 FRITIL---PPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred EEEEEC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 888886 3346788888888888776554
No 255
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=72.84 E-value=57 Score=28.07 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc------------------eeEEEEecCC--CCHHHHHHHHhh--cCcee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA------------------TSVIALGSDV--FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~------------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v 61 (143)
..++++..++|..|++.|++.|.++-+.-|. -.+++|..++ -....+.+.|+- .++.+
T Consensus 302 ~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~sl 381 (437)
T PRK05613 302 SLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANI 381 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCC
Confidence 3467788899999999999998876442221 3489998752 234566666653 23322
Q ss_pred cCC-------------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 62 NSL-------------QF-----------PVGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 62 ~~~-------------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
... .. +.-+|++|-- |..+.+++||..|++.
T Consensus 382 G~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl-----E~~~dLi~Dl~~Al~~ 436 (437)
T PRK05613 382 GDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGI-----EDIDDIIADLEGGFAA 436 (437)
T ss_pred CCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHhh
Confidence 111 01 1125666643 7899999999999864
No 256
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=72.72 E-value=8.1 Score=27.62 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=37.0
Q ss_pred CceecCCCCCCeeeEEEEec----ccChhHHHHHHHHHHHHHHHHHcCCCCCC
Q psy10208 58 GWNTNSLQFPVGIHICITHM----HTQPGVADKFISDVREELAIIMQNPGLQL 106 (143)
Q Consensus 58 GW~v~~~~~P~~ihi~v~~~----h~~~~~~~~fl~Dl~~ai~~~~~~p~~~~ 106 (143)
+|.+.++-.+.++++.+.-. ..+.+.+..|..++.++.-....||--..
T Consensus 61 ~~~vygyvT~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~ 113 (132)
T PF04628_consen 61 DYKVYGYVTNTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVKALCNPFYQP 113 (132)
T ss_dssp TEEEEEEETTT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGC
T ss_pred hHHHHhhhccCceeEEEEEecccCCcchHHHHHHHHHHHHHHHHHccCCCCCC
Confidence 66777777788899877654 45689999999999999999999997643
No 257
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=72.69 E-value=23 Score=29.70 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccC-------------------ceeEEEEecCC--CCHHHHHHHHhh--cCcee
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTP-------------------ATSVIALGSDV--FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-------------------~l~vVaf~~~~--~~i~~l~d~L~~--rGW~v 61 (143)
..+++..++++++++.|++.|.++-+.-| --++|+|..++ -....+.+.|+- .|+.+
T Consensus 250 ~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~l~~~~~s~ 329 (385)
T PRK08574 250 VRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSL 329 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCCcceEccCC
Confidence 45677788999999999999887643212 13588988752 335566777653 35544
Q ss_pred cCCC-------------CC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 62 NSLQ-------------FP-----------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 62 ~~~~-------------~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.... .| .-+|++|- -|.++.+++||..|++.
T Consensus 330 G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dli~dl~~al~~ 384 (385)
T PRK08574 330 GGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVG-----LEDVEDLIEDLDQALGS 384 (385)
T ss_pred CCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhc
Confidence 3221 11 12455554 37899999999999864
No 258
>KOG1368|consensus
Probab=72.44 E-value=58 Score=27.48 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEE--ecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGT-PATSVIAL--GSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf--~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
+.-.+-|+.|++.+++.+++++=.. -+.++|-. +-.+++...+++.+.+.|-.+-....-. +||++-. .++.+.+
T Consensus 278 ~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~r-~Rivlh~-Qvt~~~v 355 (384)
T KOG1368|consen 278 RADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGASRR-IRIVLHH-QVTDEDV 355 (384)
T ss_pred HHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeeccccc-eEEEEEE-ecCHHHH
Confidence 4456778999999999988887443 35555543 3468999999999999998776543222 7787754 4556777
Q ss_pred HHHHHHHHHH
Q psy10208 85 DKFISDVREE 94 (143)
Q Consensus 85 ~~fl~Dl~~a 94 (143)
+..+.-+++.
T Consensus 356 e~~~~~~~k~ 365 (384)
T KOG1368|consen 356 EYVKSVLSKK 365 (384)
T ss_pred HHHHHHHHHH
Confidence 7777777544
No 259
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=71.66 E-value=63 Score=27.55 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC----------------c--eeEEEEecCC--CCHHHHHHHHhh--cCcee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP----------------A--TSVIALGSDV--FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p----------------~--l~vVaf~~~~--~~i~~l~d~L~~--rGW~v 61 (143)
...+++-.++|+.+++.|++.|+++-+.-| . -.+|+|..++ .....+.+.|+- .|+.+
T Consensus 288 ~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l~l~~~~~sl 367 (425)
T PRK06084 288 ALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLVVRLVNI 367 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCCHHHHHHHHHhCCcceecccc
Confidence 456777788999999999999988755333 1 3589998642 235667777763 34443
Q ss_pred cCC-------------CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 62 NSL-------------QFP-----------VGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 62 ~~~-------------~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
... ..+ .-+|++|- -|..+.+++||..|++..+
T Consensus 368 G~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svG-----lEd~~dLi~dl~~Al~~~~ 424 (425)
T PRK06084 368 GDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIG-----IEHIDDIIADLAQALDASK 424 (425)
T ss_pred CCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhhh
Confidence 211 011 12455554 3789999999999998654
No 260
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=71.41 E-value=65 Score=27.57 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc------------------eeEEEEecCC--CCHHHHHHHHhh--cCceec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA------------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTN 62 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~------------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~ 62 (143)
..+++-.++|..|++.|++.|+++-+.-|. -.+|+|..++ -....+.+.|+- .++.+.
T Consensus 294 ~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG 373 (431)
T PRK08248 294 LRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVG 373 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceeccccC
Confidence 467778889999999999999887543231 3489998642 224566666653 344332
Q ss_pred CCC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 63 SLQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 63 ~~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
... .| .-+|++|-- +.++.+++||..|++..+
T Consensus 374 ~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-----Ed~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 374 DSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGT-----EAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred CCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhhh
Confidence 210 01 124666643 789999999999998654
No 261
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=71.17 E-value=56 Score=26.76 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeE-EEEec-CCCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSV-IALGS-DVFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~v-Vaf~~-~~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
..+.+.+.++.+.+.|+++ |+.+. .|.-.. +-+.. +.++..++++.|. ++|-.+.... .+..+||++.
T Consensus 294 ~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~ 369 (385)
T PRK09276 294 LRKIYQERRDILVEGLRKL-GLEVE-PPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT 369 (385)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC
Confidence 3444556678888999987 77754 344333 33333 3567888998875 5798776642 1356888885
No 262
>PRK07503 methionine gamma-lyase; Provisional
Probab=71.02 E-value=58 Score=27.44 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
...++..++++.+++.|++.|.++.+.-|. -.+++|..++ .....+.+.|+- +|+.+..
T Consensus 264 ~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~l~~~~~slG~ 343 (403)
T PRK07503 264 LRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGD 343 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCCcceeecccCC
Confidence 345666789999999999998877553232 2478887642 123345555543 4543332
Q ss_pred CC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 64 LQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 64 ~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.. .| .-+|++|- -|.++.+++||+.|++....
T Consensus 344 ~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~Al~~~~~ 399 (403)
T PRK07503 344 AESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVG-----LEDVADILADLAQALDACAV 399 (403)
T ss_pred CCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEe-----cCCHHHHHHHHHHHHHHHHH
Confidence 11 01 12455554 37899999999999986653
No 263
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=70.35 E-value=59 Score=26.70 Aligned_cols=83 Identities=10% Similarity=0.122 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEE-EecCC---CCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIA-LGSDV---FHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVa-f~~~~---~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
..+...+..+.+.+.|+++ |+... .|.-..+. ++.++ .+-.++++.| ++.|..+.... .+..+||++.
T Consensus 294 ~~~~~~~~r~~l~~~L~~~-~~~~~-~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 371 (388)
T PRK07366 294 TVQIFRQRRDAFINALHQI-GWPVP-LPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV 371 (388)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCccc-CCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec
Confidence 3444556667788888887 66543 34333333 33332 2456788777 67899876642 1346888886
Q ss_pred ecccChhHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVRE 93 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ 93 (143)
. ..+.+++.++-|++
T Consensus 372 ~---~~~~l~~~l~rl~~ 386 (388)
T PRK07366 372 H---DPDILEEAVERIAA 386 (388)
T ss_pred C---CHHHHHHHHHHHHH
Confidence 3 23555555555543
No 264
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=69.78 E-value=47 Score=28.47 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEecc----CceeEEEEecC----CCC---HHHHHHHHhhcCceecCCCCCCeeeEE
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIFGT----PATSVIALGSD----VFH---IYRLSSGLNKRGWNTNSLQFPVGIHIC 73 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vlg~----p~l~vVaf~~~----~~~---i~~l~d~L~~rGW~v~~~~~P~~ihi~ 73 (143)
+.+++.+..+++.++|+++ ..+.++++ .-+.-|-|..+ ..+ ...+..+|.++|-.+... ....+|+.
T Consensus 325 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~~lr~~ 403 (443)
T PRK08360 325 LLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF-SGNVLRIQ 403 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec-CCCEEEEe
Confidence 3455666677777777664 12333433 23333334322 112 246788899999666432 23445654
Q ss_pred EEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 74 ITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
....| +++.++++++-+++++..++.
T Consensus 404 P~l~~-t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 404 PPLTI-EKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 44333 578999999999999988743
No 265
>KOG2862|consensus
Probab=69.28 E-value=59 Score=27.58 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=68.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEec-c--CceeEEE-Eec-CCCCHHHHHHHHhhc-CceecCCCC---CCeee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFG-T--PATSVIA-LGS-DVFHIYRLSSGLNKR-GWNTNSLQF---PVGIH 71 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~--p~l~vVa-f~~-~~~~i~~l~d~L~~r-GW~v~~~~~---P~~ih 71 (143)
+|-.++.++=.++++++...|++. |+++.. + +.+|.|. .+- ..+|--++...+-.+ +-.+..--. +.-+|
T Consensus 278 eGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~R 356 (385)
T KOG2862|consen 278 EGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFR 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEE
Confidence 467778888889999999999998 888754 2 3444432 232 257777888777665 444544433 44588
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|-++--..+.+.++.-++-|+.++..-
T Consensus 357 IGl~gcna~~e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 357 IGLLGCNANVEYIDNVVELLKLALQRK 383 (385)
T ss_pred EEEeeccCCcHHHHHHHHHHHHHHhhc
Confidence 888777777788999888888887653
No 266
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=69.20 E-value=73 Score=27.29 Aligned_cols=95 Identities=9% Similarity=0.028 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEeccC----ceeEEEEecCC----CC---HHHHHHHHhhcCceecCCCCCCeeeEE
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIFGTP----ATSVIALGSDV----FH---IYRLSSGLNKRGWNTNSLQFPVGIHIC 73 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vlg~p----~l~vVaf~~~~----~~---i~~l~d~L~~rGW~v~~~~~P~~ihi~ 73 (143)
+.++..+..++|.++|+++ ..+.++++. -+.-+-|..+. -+ ...+..+|.++|-.+... .++.+|++
T Consensus 328 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~~lr~~ 406 (445)
T PRK08593 328 LLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV-AGNVLRFQ 406 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc-CCCEEEEE
Confidence 4456666777788888764 122333331 12122232211 01 346788899999766433 23456776
Q ss_pred EEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 74 ITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
....| +++.++.+++-++++++.+.+..
T Consensus 407 p~l~~-t~~~id~~~~~l~~~l~~~~~~~ 434 (445)
T PRK08593 407 PPLVI-TYEQLDTALNTIEQAFTALEAGK 434 (445)
T ss_pred CCCcc-CHHHHHHHHHHHHHHHHHHhccc
Confidence 65434 57899999999999999887643
No 267
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=68.39 E-value=6 Score=31.44 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC-CeeEeccCce-eE----EEEecC--CCCHHHHHHH----HhhcCceecCCCCCCee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMD-GLFIFGTPAT-SV----IALGSD--VFHIYRLSSG----LNKRGWNTNSLQFPVGI 70 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~-g~~vlg~p~l-~v----Vaf~~~--~~~i~~l~d~----L~~rGW~v~~~~~P~~i 70 (143)
|.+-.++.++++..|...|+++. |.--+.|+.. |. +.=..+ .+....|.++ =.+-|..+- .++
T Consensus 43 ~~~~I~~ll~ta~~l~~~l~~~~~G~~~~ydl~sI~~Ri~Ll~~~~~aI~~~tt~L~~KVq~AH~~~g~~it-----~ai 117 (228)
T PF07373_consen 43 YEKEINKLLKTAFELKQSLEKIAEGGITIYDLDSIPARIELLIDVGDAIHFATTELQYKVQAAHVEIGFEIT-----KAI 117 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 66778889999999999998873 2222333211 00 000000 0111111221 122232221 111
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHcCCCCCCCChhhHHh
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYG 114 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~~~~~~a~~Yg 114 (143)
=..+.| ..+.+-+..-+++|++..+.+.+.|+.++.+.|.+|=
T Consensus 118 i~~~np-fat~~ql~~~i~~l~~~~~kv~~yPDL~~~D~ATiYv 160 (228)
T PF07373_consen 118 IRAINP-FATVDQLKDEIEALKALLEKVLQYPDLTPTDVATIYV 160 (228)
T ss_pred HHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCccchhHHHH
Confidence 122333 4456888999999999999999999999999999993
No 268
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=67.99 E-value=37 Score=29.02 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCceecCC-CCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 47 IYRLSSGLNKRGWNTNSL-QFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~-~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
...+...+.++|=.+... .....+|++.... ++++.+++.++-|++++..+..
T Consensus 393 ~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~-~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 393 TANICKEANKRGLLLLSAGTYGNVIRVLMPLV-ITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred HHHHHHHHHHCCeEEeecCCCCCEEEEECCCc-cCHHHHHHHHHHHHHHHHHHHH
Confidence 346777788899666432 2234456554322 4578999999999999887743
No 269
>PRK07337 aminotransferase; Validated
Probab=67.86 E-value=67 Score=26.37 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC------CCHHHHHHH-HhhcCceecCCC------CCC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV------FHIYRLSSG-LNKRGWNTNSLQ------FPV 68 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~------~~i~~l~d~-L~~rGW~v~~~~------~P~ 68 (143)
|++..+...+..+.+.+.|+++ |+.+...|+-..+.| +.+. .+-.+++++ |+++|+.+.... .+.
T Consensus 285 ~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~ 363 (388)
T PRK07337 285 YERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRD 363 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCC
Confidence 3444555566677788888887 665433554333333 3222 466788877 567899986432 134
Q ss_pred eeeEEEEecccChhHHHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
.+|+++.. ..+.+.+-++-|+
T Consensus 364 ~~Ri~~~~---~~~~l~~~l~rl~ 384 (388)
T PRK07337 364 YIRLSYAT---SMSRLEEAVARLG 384 (388)
T ss_pred EEEEEecC---CHHHHHHHHHHHH
Confidence 68888874 2344444444443
No 270
>PLN00144 acetylornithine transaminase
Probab=67.25 E-value=60 Score=27.08 Aligned_cols=52 Identities=6% Similarity=-0.064 Sum_probs=36.7
Q ss_pred CHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+...+..++.++|=.+........+|++... ..+++.++++++-|++++..+
T Consensus 330 ~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~-~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 330 PAGPLVDACRDSGLLVLTAGKGDVVRLVPPL-VISEAELEQAVEILADCLPAL 381 (382)
T ss_pred ccHHHHHHHHHCCeEEeecCCCCEEEEeCCC-ccCHHHHHHHHHHHHHHHHhc
Confidence 3457889999999777554334567776543 245788999999998887653
No 271
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=66.51 E-value=53 Score=27.94 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhh----CCC---eeEeccCceeEEEEecC---CCCH--HHHHHHHhhcCceecCCCCCCeeeEEE
Q psy10208 7 TRSIIETVKYIEKELRS----MDG---LFIFGTPATSVIALGSD---VFHI--YRLSSGLNKRGWNTNSLQFPVGIHICI 74 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~----i~g---~~vlg~p~l~vVaf~~~---~~~i--~~l~d~L~~rGW~v~~~~~P~~ihi~v 74 (143)
.+++.+..+++.++|++ .+- ++..|.+...++.+... .... ..+..+|.++|..+++ +++
T Consensus 312 ~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~--------l~i 383 (431)
T PRK06209 312 IERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS--------LVV 383 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc--------ccc
Confidence 45556667778877765 321 12233332223322211 1111 2577888899987632 455
Q ss_pred EecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 75 THMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+..|+ ++.++++++-|++++..+++
T Consensus 384 s~~ht-~~dId~~l~~l~~~l~~~~~ 408 (431)
T PRK06209 384 SYAHG-DADIERTIDAVHGALGVYRK 408 (431)
T ss_pred cccCC-HHHHHHHHHHHHHHHHHHHH
Confidence 55665 68899999999999988843
No 272
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=66.38 E-value=77 Score=26.52 Aligned_cols=89 Identities=10% Similarity=0.036 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCcee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v 61 (143)
+...+++..+++..+++.|++.|+++-+.-|. -.+|+|..++ -....+.+.|+- .|+.+
T Consensus 256 l~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~sl 335 (390)
T PRK08133 256 LSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANL 335 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcceEeccC
Confidence 44567777889999999999999887654443 3589998752 224566666653 34432
Q ss_pred cCC-------------CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 62 NSL-------------QFP-----------VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 62 ~~~-------------~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
... ..| .-+|++|- -|.++.+++||+.+++
T Consensus 336 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~ 389 (390)
T PRK08133 336 GDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVG-----LEDVADIKADLARGLA 389 (390)
T ss_pred CCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHHhh
Confidence 211 011 12455554 3789999999999875
No 273
>KOG1358|consensus
Probab=66.29 E-value=34 Score=29.75 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC------CC---HHHHHHHHhhcCceec---------CCCCCCee
Q psy10208 9 SIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV------FH---IYRLSSGLNKRGWNTN---------SLQFPVGI 70 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~------~~---i~~l~d~L~~rGW~v~---------~~~~P~~i 70 (143)
.+...+..+-.++....+|.+.|+|.-|++-....+ -+ +..+.|+--.+|-.+- ..+.||++
T Consensus 360 ~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSi 439 (467)
T KOG1358|consen 360 PLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSI 439 (467)
T ss_pred hhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcE
Confidence 334444556667778889999999999997654321 11 1233433333355332 23458899
Q ss_pred eEEEEecccChhHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
||||+..|. ++-+++..+-+++..
T Consensus 440 ri~~~a~~s-eeel~ra~~~ik~~~ 463 (467)
T KOG1358|consen 440 RICVSAGMS-EEELERAAELIKEVA 463 (467)
T ss_pred EEEEeCCCC-HHHHHHHHHHHHHHH
Confidence 999998776 344444444444443
No 274
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=66.24 E-value=4.9 Score=25.07 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=13.4
Q ss_pred HHHHHHHhhcCceecC
Q psy10208 48 YRLSSGLNKRGWNTNS 63 (143)
Q Consensus 48 ~~l~d~L~~rGW~v~~ 63 (143)
++|.+.|.+|||+-+.
T Consensus 48 ~~l~~~m~~kGwY~~~ 63 (64)
T PF07875_consen 48 YELFNYMNQKGWYQPP 63 (64)
T ss_pred HHHHHHHHHcCCcCCC
Confidence 6888999999998653
No 275
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=65.97 E-value=63 Score=27.83 Aligned_cols=87 Identities=7% Similarity=-0.032 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhCC-Cee-Eecc--CceeEEEEecC-CCCHHHHHHHHhhcCceecCCC-CCCeeeEEEEecccC
Q psy10208 7 TRSIIETVKYIEKELRSMD-GLF-IFGT--PATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQ-FPVGIHICITHMHTQ 80 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~-g~~-vlg~--p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~-~P~~ihi~v~~~h~~ 80 (143)
.++..+..++|.++|+++- .+. .+++ -.-.++++... +.....+...|.++|-.+.... .+..+|+.... ..+
T Consensus 349 ~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl-~~t 427 (442)
T TIGR03372 349 PAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGTLNNAKSIRIEPPL-TIT 427 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCChHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCc-ccC
Confidence 4455556677777777641 121 2222 12233443322 1123578899999997775432 22345554433 235
Q ss_pred hhHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREE 94 (143)
Q Consensus 81 ~~~~~~fl~Dl~~a 94 (143)
++.+|++++-|+++
T Consensus 428 ~~~id~~~~~l~~~ 441 (442)
T TIGR03372 428 IEQCALVIKAAKDA 441 (442)
T ss_pred HHHHHHHHHHHHHh
Confidence 78899998887765
No 276
>PRK07777 aminotransferase; Validated
Probab=65.45 E-value=75 Score=26.06 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC---CCCHHHHHHHHh-hcCceecCCC--------CCCeeeEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD---VFHIYRLSSGLN-KRGWNTNSLQ--------FPVGIHIC 73 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~---~~~i~~l~d~L~-~rGW~v~~~~--------~P~~ihi~ 73 (143)
.+.+-+.++.+.+.|+++ |+++. .|+-+-+.| ..+ ..+-.++++.|. ++|..+.... .+..+||+
T Consensus 288 ~~~~~~~~~~l~~~L~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~ 365 (387)
T PRK07777 288 RDSLQAKRDRLAAGLAEA-GFEVH-DSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFA 365 (387)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCcc-CCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEE
Confidence 445566777888889887 67754 344333333 422 236688999995 6798775532 12358888
Q ss_pred EEecccChhHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ 93 (143)
+.. ..+.+++.++-|++
T Consensus 366 ~~~---~~~~l~~~l~~l~~ 382 (387)
T PRK07777 366 FCK---RDDTLDEAIRRLRA 382 (387)
T ss_pred ecC---CHHHHHHHHHHHHH
Confidence 863 24556665655544
No 277
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=65.37 E-value=69 Score=27.41 Aligned_cols=90 Identities=17% Similarity=0.061 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecCC--CC---HHHHHHHHhhcCceecCCCCCCeeeEEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSDV--FH---IYRLSSGLNKRGWNTNSLQFPVGIHICIT 75 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~~--~~---i~~l~d~L~~rGW~v~~~~~P~~ihi~v~ 75 (143)
+.+++.+..++|.++|+++. .+.++++ .-+--|-|..+. .+ ...+...|.++|-.+... .+..++ ++
T Consensus 340 ~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~-~~~~lr--~~ 416 (441)
T PRK05769 340 LLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGA-GKSAIR--II 416 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecC-CCCEEE--Ee
Confidence 45566677788888887652 1333333 223333343321 11 245778888999666422 223344 44
Q ss_pred eccc-ChhHHHHHHHHHHHHHHHH
Q psy10208 76 HMHT-QPGVADKFISDVREELAII 98 (143)
Q Consensus 76 ~~h~-~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+++ +++.++++++-+++++..+
T Consensus 417 p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 417 PPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4443 5789999999999888653
No 278
>PRK07049 methionine gamma-lyase; Validated
Probab=65.36 E-value=86 Score=26.71 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-------------------eeEEEEecCC--CCHHHHHHHHhh--cCce
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-------------------TSVIALGSDV--FHIYRLSSGLNK--RGWN 60 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-------------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~ 60 (143)
...+++..++++.+++.|++.|+++-+.-|. -.+|+|..++ -....+.+.|+- .|+.
T Consensus 291 ~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~s 370 (427)
T PRK07049 291 VLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVS 370 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEccc
Confidence 4556777889999999999998887553331 3489998642 224566666653 3443
Q ss_pred ecCCC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 61 TNSLQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 61 v~~~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+.... .| .-+|++|- -|.++.+++||+.|++
T Consensus 371 lG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~ 425 (427)
T PRK07049 371 LGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIG-----IEHPDDLIADLAQALD 425 (427)
T ss_pred CCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeC-----cCCHHHHHHHHHHHHh
Confidence 32210 01 12455554 2789999999999986
No 279
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=65.31 E-value=90 Score=26.91 Aligned_cols=93 Identities=9% Similarity=0.056 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEecc----CceeEEEEecCC----------CC---HHHHHHHHhhcCceecCCC-C
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIFGT----PATSVIALGSDV----------FH---IYRLSSGLNKRGWNTNSLQ-F 66 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vlg~----p~l~vVaf~~~~----------~~---i~~l~d~L~~rGW~v~~~~-~ 66 (143)
+.+++.+..++|.++|+++ ..+-++++ .-+--|-|..+. .+ ...+...|.++|..+.... .
T Consensus 345 l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~ 424 (459)
T PRK06931 345 LAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRN 424 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCC
Confidence 3455666677888888765 22223333 223333343221 01 2356777889998875432 2
Q ss_pred CCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 67 PVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 67 P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+..+++.... .++++.++.+++-+.+++..+-
T Consensus 425 ~~~l~~~Ppl-~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 425 GNVVRLLPPL-LITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred CCEEEEECCC-CcCHHHHHHHHHHHHHHHHHHH
Confidence 3445554433 3367899999999999987653
No 280
>PRK07483 hypothetical protein; Provisional
Probab=64.55 E-value=91 Score=26.71 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEecc----CceeEEEEecC-----CCC-----HHHHHHHHhhcCceecCCC-C---
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIFGT----PATSVIALGSD-----VFH-----IYRLSSGLNKRGWNTNSLQ-F--- 66 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vlg~----p~l~vVaf~~~-----~~~-----i~~l~d~L~~rGW~v~~~~-~--- 66 (143)
..+++-+..++|.++|+++ ..+.++++ --+--|-|..+ .++ ...+...+.++|-.+.... .
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~ 405 (443)
T PRK07483 326 LLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDG 405 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccC
Confidence 4556667778888888753 23333333 22333334321 111 1356778889997764331 1
Q ss_pred CCeeeEEEEeccc-ChhHHHHHHHHHHHHHHHHHc
Q psy10208 67 PVGIHICITHMHT-QPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 67 P~~ihi~v~~~h~-~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.+-++.++|+.+ +++.++++++-|++++.++..
T Consensus 406 ~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 406 VRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1123566777655 689999999999999987764
No 281
>PRK05939 hypothetical protein; Provisional
Probab=64.51 E-value=61 Score=27.33 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC-CCHHHHHHHHhh--cCceecC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV-FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~-~~i~~l~d~L~~--rGW~v~~ 63 (143)
...+++..++|..+++.|++.|.++-+.-|. -.+|+|..++ .+.+.+.+.|+- .|+.+..
T Consensus 264 ~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~~~~~~f~~~l~l~~~~~s~G~ 343 (397)
T PRK05939 264 ALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADGIDCFDFLNRLKLVIKATHLGD 343 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCHHHHHHHHHhCCcceEccCCCC
Confidence 3467778889999999999988775443232 4678887642 356677777763 4443322
Q ss_pred CC-------------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 64 LQ-------------F-----------PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 64 ~~-------------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. + |.-+|++|- -|.++.+++||+.|++
T Consensus 344 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svG-----lEd~~dLi~dl~~Al~ 395 (397)
T PRK05939 344 TRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVG-----IEDEADLIADFEQALD 395 (397)
T ss_pred CCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeC-----CCCHHHHHHHHHHHHh
Confidence 10 1 112455554 3789999999999975
No 282
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=64.42 E-value=28 Score=20.80 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhCCCeeEe-ccC--ceeEEEEecCCCCHHHHHHHHhhcCc
Q psy10208 11 IETVKYIEKELRSMDGLFIF-GTP--ATSVIALGSDVFHIYRLSSGLNKRGW 59 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vl-g~p--~l~vVaf~~~~~~i~~l~d~L~~rGW 59 (143)
-.-++.+.+.|.++||++-+ .+. ..-.|-+..+..++.++.+.+++.|.
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 34578899999999998743 343 33344455556789999999999886
No 283
>PRK12403 putative aminotransferase; Provisional
Probab=64.21 E-value=95 Score=26.76 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=53.9
Q ss_pred HHHHH-HHHHHHHHHHhhC-CCeeEecc----CceeEEEEecCC-----CC-----HHHHHHHHhhcCceecCCCCCCee
Q psy10208 7 TRSII-ETVKYIEKELRSM-DGLFIFGT----PATSVIALGSDV-----FH-----IYRLSSGLNKRGWNTNSLQFPVGI 70 (143)
Q Consensus 7 ~~~~~-~~a~~l~~~i~~i-~g~~vlg~----p~l~vVaf~~~~-----~~-----i~~l~d~L~~rGW~v~~~~~P~~i 70 (143)
.+++. +..++|.++|+++ ..+.++++ .-+.-|-|..+. ++ ...+...+.++|-.+.. .+-
T Consensus 349 ~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~----~~~ 424 (460)
T PRK12403 349 VTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRS----TLG 424 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEe----cCC
Confidence 34443 5667777777653 22333433 334445554321 11 23345566788966642 222
Q ss_pred eEEEEeccc-ChhHHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHT-QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 71 hi~v~~~h~-~~~~~~~fl~Dl~~ai~~~~ 99 (143)
++.++|+++ +++.++++++-++++++.+.
T Consensus 425 ~~~l~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 425 RMIMAPALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 466888885 68999999999999998874
No 284
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=64.19 E-value=47 Score=28.92 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhCC-Cee-Eecc----CceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 8 RSIIETVKYIEKELRSMD-GLF-IFGT----PATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~-g~~-vlg~----p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+++.+..++|.++|+++. .+. ++++ ....++++.... .....+.+.+.++|-.+... .+..+|+.-. ..++
T Consensus 372 ~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~-g~~~ir~~Pp-l~it 449 (464)
T TIGR00699 372 ENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGC-GVKAIRLRPM-LVFQ 449 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecC-CCCeEEEeCC-CCCC
Confidence 344455578888887651 122 3333 456677775432 11356788889999877543 2234555432 2335
Q ss_pred hhHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREE 94 (143)
Q Consensus 81 ~~~~~~fl~Dl~~a 94 (143)
++.++.+++-|.++
T Consensus 450 ~~eid~~~~~l~~~ 463 (464)
T TIGR00699 450 KHHADIFLEIISKI 463 (464)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888888877765
No 285
>PLN02913 dihydrofolate synthetase
Probab=64.09 E-value=14 Score=32.50 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=52.8
Q ss_pred eEeccCc--eeEEEEecC---CCCHHHHHHHHhhcCceecCCCCCCee----eEEEE--ecccChhHHHHHHHHHHHHHH
Q psy10208 28 FIFGTPA--TSVIALGSD---VFHIYRLSSGLNKRGWNTNSLQFPVGI----HICIT--HMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 28 ~vlg~p~--l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~~P~~i----hi~v~--~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+-+|+|+ +|+|-++-. +=...-++.-|+..|+.+..++.|.=+ ||.|. -..++.+...++++.++++.+
T Consensus 66 ~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~ 145 (510)
T PLN02913 66 DRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILD 145 (510)
T ss_pred HHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHH
Confidence 3467775 678888743 234567788889999999999999843 67776 556666777777888888877
Q ss_pred HHH
Q psy10208 97 IIM 99 (143)
Q Consensus 97 ~~~ 99 (143)
.+.
T Consensus 146 ~~~ 148 (510)
T PLN02913 146 EAI 148 (510)
T ss_pred Hhh
Confidence 653
No 286
>PLN02397 aspartate transaminase
Probab=64.05 E-value=88 Score=26.37 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC----eeEeccCceeEEEEecCCCCHHHHHHHHh-hcCceecCCCCCCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDG----LFIFGTPATSVIALGSDVFHIYRLSSGLN-KRGWNTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g----~~vlg~p~l~vVaf~~~~~~i~~l~d~L~-~rGW~v~~~~~P~~ihi~v~~~h 78 (143)
++..+...+..+.+.++|+++ | +.. -.|+-..+.|-. ++ .+++++|. +.|..+. +.+ |+++..
T Consensus 335 ~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~-~~p~gg~fl~~~--l~-~~~~~~Ll~~~~V~v~----~~~-Ri~~~~-- 402 (423)
T PLN02397 335 KGMADRIISMRQKLYDALEAR-GSPGDWSH-ITKQIGMFSFTG--LN-KEQVDRMTKEYHIYMT----RDG-RISMAG-- 402 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCCCCCc-ccCCceEEEecC--CC-HHHHHHHHHhCCEEEC----CCC-eEEEee--
Confidence 445567777888899999988 4 543 247776777743 33 35777885 5699985 344 999974
Q ss_pred cChhHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELA 96 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~ 96 (143)
++.+.++.+++-|+++++
T Consensus 403 ~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 403 LSSKNVPYLADAIHAVVT 420 (423)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 345789999999998874
No 287
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=63.93 E-value=77 Score=26.79 Aligned_cols=89 Identities=10% Similarity=0.086 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhhC---CCeeEeccCceeEEE--EecCCC---------C---HHHHHHHHhhcCceecCCCCCC
Q psy10208 6 TTRSIIETVKYIEKELRSM---DGLFIFGTPATSVIA--LGSDVF---------H---IYRLSSGLNKRGWNTNSLQFPV 68 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i---~g~~vlg~p~l~vVa--f~~~~~---------~---i~~l~d~L~~rGW~v~~~~~P~ 68 (143)
..+++.+..+++.++|+++ -++..-..+.-.+++ |..+.. + ...+.+.|.++|-.+... .++
T Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~-~~~ 398 (426)
T PRK00062 320 FYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPS-QFE 398 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecC-CcC
Confidence 4556666777777777642 033221122223333 332211 1 247888999999666543 333
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+.+ .. ..+++.++++++-|++++..+
T Consensus 399 ~~~~--~~-~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 399 AGFV--SA-AHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred ceee--ec-cCCHHHHHHHHHHHHHHHHhh
Confidence 3433 33 445788999999999988654
No 288
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=63.92 E-value=65 Score=24.80 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhh---CCCeeEeccCceeEEEEe--cCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRS---MDGLFIFGTPATSVIALG--SDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITH 76 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~---i~g~~vlg~p~l~vVaf~--~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~ 76 (143)
||..-.+..+..-+.+.+.++. ..|+.-+.-..+ |+ ..+++..-|.+.|+.+|..+..-.. -++ |.
T Consensus 42 G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i----~r~a~~~vp~d~L~~~L~~~G~~ae~~~~--~i~---T~ 112 (190)
T PF09840_consen 42 GYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDI----FREAGYPVPPDLLVDALKLLGYKAEYRED--VIK---TD 112 (190)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHH----HHHcCCCCCHHHHHHHHHhCCCeeEEeCC--eEE---ec
Confidence 5555555555555555555554 223332210000 11 1367888999999999998765332 222 22
Q ss_pred cccChhHHHHHHHHHHHHHHHHHcCCCC-CCCChhhHHhhhccCCCcchHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAIIMQNPGL-QLEGVMAMYGKSHSIPDRSIIGDFTR 130 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~~~p~~-~~~~~a~~Yg~~~~ipd~~~v~~~~~ 130 (143)
...+.+-+++++|.++.++++..|.. +.....+.|-.+-.+|-..++++.+.
T Consensus 113 --a~~eev~~l~~~Lse~~~e~~~~~~~~~aK~vi~~~s~~~g~~p~evie~~~e 165 (190)
T PF09840_consen 113 --APLEEVVELAERLSEIYKELRFQPLGTKAKRVIAAVSYATGLDPEEVIEELLE 165 (190)
T ss_pred --CCHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 22478999999999999999988754 33345666766666664466665543
No 289
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=63.29 E-value=95 Score=26.47 Aligned_cols=92 Identities=4% Similarity=-0.110 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecC--CCCHHHHHHHHhhcCc-eecCCCCCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSD--VFHIYRLSSGLNKRGW-NTNSLQFPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~--~~~i~~l~d~L~~rGW-~v~~~~~P~~ihi~v~ 75 (143)
|-.++.++..+.++.|.+-|.+.+-+.-...| ....|+|+.. ++|- .+.....+.|- .+-....|.++|+.+-
T Consensus 264 Gl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~ld~-~fv~eae~~gl~~lkGhr~vgGmRasiy 342 (365)
T COG1932 264 GLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAELDK-GFVAEAEAAGLIYLKGHRSVGGLRASIY 342 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHHHHH-HHHHHHHHcCCceeccccCCCceeeeee
Confidence 66778888899999999999998544444443 3457888865 3443 34445555554 4444566889999997
Q ss_pred ecccChhHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai 95 (143)
+ -+.-+.++.+++=+++..
T Consensus 343 n-A~~~e~veaL~~fm~~f~ 361 (365)
T COG1932 343 N-AVPLEDVEALTDFMDWFE 361 (365)
T ss_pred c-CCCHHHHHHHHHHHHHHH
Confidence 5 444456666666555543
No 290
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=63.18 E-value=87 Score=26.01 Aligned_cols=90 Identities=8% Similarity=0.062 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhhCC-CeeEeccC-ce-eEEEEecC-CC--CHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 7 TRSIIETVKYIEKELRSMD-GLFIFGTP-AT-SVIALGSD-VF--HIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~-g~~vlg~p-~l-~vVaf~~~-~~--~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
.++..+..+++.++|+++. .+.++.++ .. ..+.+... .. +..++.++|.++|=.+.. ..+..+|++....| +
T Consensus 306 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~-~g~~~lRl~~~~~~-~ 383 (403)
T PRK05093 306 LEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLV-AGPDVLRFAPSLVI-E 383 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEec-CCCCEEEEeCCCCC-C
Confidence 3555667788888888762 12233332 11 22333322 11 346788999888855542 22356777666544 4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELAII 98 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~ 98 (143)
.+.++++++-|+++++.+
T Consensus 384 ~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 384 EADIDEGLARFEKAVAKV 401 (403)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 688999999998887654
No 291
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=62.75 E-value=22 Score=30.81 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeE-EEEecC---CCCHHHHHHHHhhcC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSV-IALGSD---VFHIYRLSSGLNKRG 58 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~v-Vaf~~~---~~~i~~l~d~L~~rG 58 (143)
+||++..++..+.++++.+.|+++. |.+++..|.-|| +|++.+ +-|+-.+.-.|-.||
T Consensus 321 ~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~~~~ 385 (444)
T TIGR03531 321 KGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLGSMLYSRR 385 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccccCHHHHHHHHHhCC
Confidence 5899999999999999999998863 667875554444 455554 457888888886554
No 292
>COG1647 Esterase/lipase [General function prediction only]
Probab=62.66 E-value=8.5 Score=30.81 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=43.6
Q ss_pred ceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeE--EEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 34 ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHI--CITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 34 ~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi--~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+.+=.|+..+-|+-.|++.|+++||.+.+++.|..=+. -+ .++ -.+..++|+-.+...+++
T Consensus 18 VLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~f--l~t---~~~DW~~~v~d~Y~~L~~ 81 (243)
T COG1647 18 VLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDF--LKT---TPRDWWEDVEDGYRDLKE 81 (243)
T ss_pred EEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHH--hcC---CHHHHHHHHHHHHHHHHH
Confidence 355667888888999999999999999999998862111 01 122 245556777777777774
No 293
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=61.87 E-value=1.1e+02 Score=26.55 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
..++.-+...++.++|+++. .+.++.+ --+--+-|..+ +...++...|++.|-.+.. +.|..+|+. =|..++
T Consensus 305 ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~-~~a~~~~~~~~~~gvL~~~-a~~~ViR~~-PpL~i~ 381 (404)
T COG4992 305 LLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEP-YRARDIVRALREEGVLVLP-AGPNVIRFL-PPLVIT 381 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCc-ccHHHHHHHHHHCCeEEec-CCCCeEEec-CCccCC
Confidence 44556667778888888752 2223322 22222223222 2468999999999954432 335566763 244557
Q ss_pred hhHHHHHHHHHHHHHHHHHc
Q psy10208 81 PGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++.+++.++-++++++.+..
T Consensus 382 ~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 382 EEEIDEALDALERALAAASA 401 (404)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999886654
No 294
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.83 E-value=1.1e+02 Score=26.49 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc------------------eeEEEEecCC--CCHHHHHHHHhh--cCcee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA------------------TSVIALGSDV--FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~------------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v 61 (143)
..++++..+++..|++.|++.|.++-+.-|. -.+++|..++ .....+.+.|+- .|+.+
T Consensus 290 ~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~sl 369 (432)
T PRK06702 290 HLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHV 369 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccceecccc
Confidence 3456677899999999999999887654442 2689998642 234566666652 34333
Q ss_pred cCC----CCC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 62 NSL----QFP--------------------VGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 62 ~~~----~~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
-.. ..| .-+|++|- -|.++.+++||+.+++-=+++
T Consensus 370 Gg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG-----lEd~eDLi~Dl~~Al~~~~~~ 428 (432)
T PRK06702 370 ADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVG-----IEDVSDIIADLEAALVGGKQH 428 (432)
T ss_pred CCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhcCccc
Confidence 111 001 12455554 378999999999998765554
No 295
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=61.52 E-value=99 Score=26.08 Aligned_cols=88 Identities=6% Similarity=-0.005 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhh----CCCeeEecc-C-ceeEEEEecCC-CCHHHHHHHHhhcCceecCCC-CCCeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRS----MDGLFIFGT-P-ATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQ-FPVGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~----i~g~~vlg~-p-~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~-~P~~ihi~v~~~ 77 (143)
+.+++.+..+++.+++++ .+++ +++ + .-..+.+...+ .....+...|.++|-.+.... .+..+|++...
T Consensus 316 l~~~~~~~g~~l~~~l~~l~~~~~~~--~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l- 392 (412)
T TIGR02407 316 FEKAVQRKSEIIQERLDRIVAEYPEL--IKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPL- 392 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCc--eEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCC-
Confidence 345555666777777764 3322 223 1 22334444332 234577888999997775432 23446654432
Q ss_pred ccChhHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELA 96 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~ 96 (143)
..+++.++.+++-++++++
T Consensus 393 ~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 393 TIDEETLQQGLDILEQAVE 411 (412)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 3457889999998888875
No 296
>PF10894 DUF2689: Protein of unknown function (DUF2689); InterPro: IPR024396 Members of this protein family are annotated as conjugal transfer protein TrbD; however, currently no function is known.
Probab=61.35 E-value=5.3 Score=24.94 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.4
Q ss_pred hccCCCcchHHHHHHHHHHhhc
Q psy10208 116 SHSIPDRSIIGDFTRYYIDATY 137 (143)
Q Consensus 116 ~~~ipd~~~v~~~~~~~~d~~y 137 (143)
+-++||+++-++|+...|..|-
T Consensus 11 a~sVPdk~vsDDFmhaVlSNCt 32 (61)
T PF10894_consen 11 ARSVPDKSVSDDFMHAVLSNCT 32 (61)
T ss_pred EEecCCCcccHHHHHHHHhcCc
Confidence 4689999999999999998873
No 297
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=61.02 E-value=29 Score=24.85 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhc-Cc-eecCC---C------CCCeeeEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKR-GW-NTNSL---Q------FPVGIHICI 74 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~r-GW-~v~~~---~------~P~~ihi~v 74 (143)
.+.|.++++.|.++|-+--++.. .++--|-|+.. ++|---=+...|+. || .|+.. + .|.+||+.+
T Consensus 15 ~e~I~~at~eLl~~i~~~N~l~~---edivSv~FT~T~DL~a~FPA~aaR~~~~~~~Vplmc~qE~~V~gsL~rcIRvli 91 (117)
T cd02185 15 AEEILEATRELLEEIIERNNIKP---EDIISVIFTVTPDLDAAFPAKAARELGGWKYVPLMCAQEMDVPGSLPRCIRVLI 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH---HHEEEEEEEeCCcccccChHHHHHhcCCCCCcceeecCcCCCCCCCCceeEEEE
Confidence 56788888888877755445432 23334457653 45543335677777 78 55543 2 355677655
Q ss_pred E
Q psy10208 75 T 75 (143)
Q Consensus 75 ~ 75 (143)
.
T Consensus 92 ~ 92 (117)
T cd02185 92 H 92 (117)
T ss_pred E
Confidence 3
No 298
>PRK06148 hypothetical protein; Provisional
Probab=60.76 E-value=1.1e+02 Score=29.34 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEecc----CceeEEEEecCC----CC---HHHHHHHHhhcCceecCCC-CCCeeeE
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIFGT----PATSVIALGSDV----FH---IYRLSSGLNKRGWNTNSLQ-FPVGIHI 72 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vlg~----p~l~vVaf~~~~----~~---i~~l~d~L~~rGW~v~~~~-~P~~ihi 72 (143)
+.+++.+...+|.++|+++ ..+.++++ .-+--|-|..+. -+ ...+.+.|.++|-.+.... ....+++
T Consensus 907 l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~ 986 (1013)
T PRK06148 907 LQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKI 986 (1013)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEE
Confidence 4566677788888888775 12223333 223233343221 11 2457788999997775431 1233455
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
... ..++++.+|.+++-|++++.++
T Consensus 987 ~Pp-l~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 987 RPP-LIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred eCC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 432 2335789999999999998765
No 299
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=60.43 E-value=1e+02 Score=25.97 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------------ceeEEEEecCC------CCHHHHHHHHhh--cC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP-----------------ATSVIALGSDV------FHIYRLSSGLNK--RG 58 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------------~l~vVaf~~~~------~~i~~l~d~L~~--rG 58 (143)
..++++..+++.++++.|++.|+++-+--| --++++|..+. ...+++.+.|+- .|
T Consensus 267 ~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~ 346 (403)
T PRK07810 267 ALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDIS 346 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEe
Confidence 346677888999999999999988755322 14589998753 123566666542 23
Q ss_pred ceecCC----CCC--------------------CeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 59 WNTNSL----QFP--------------------VGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 59 W~v~~~----~~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+.+-.. ..| .-+|++|- -+.++.+++||+.|+
T Consensus 347 ~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svG-----lE~~~dli~dl~~Al 402 (403)
T PRK07810 347 NNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVG-----LEDTDDLIADLDRAL 402 (403)
T ss_pred ccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHhh
Confidence 322111 001 12455554 378999999999875
No 300
>PRK07683 aminotransferase A; Validated
Probab=60.27 E-value=97 Score=25.56 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-C--CCCHHHHHHH-HhhcCceecCCC-----CCCeeeEEEE
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-D--VFHIYRLSSG-LNKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~--~~~i~~l~d~-L~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
+..+...+..+.+.+.|++. |+.+. .|+.+.+.|.. . ..+-.++++. +++.|+.+.... .+..+||++.
T Consensus 287 ~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~ 364 (387)
T PRK07683 287 MMRHQYKKRRDYVYNRLISM-GLDVE-KPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA 364 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccc-CCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec
Confidence 33445556677778888876 65533 45555555543 2 3456677766 577899885532 2457888887
Q ss_pred ecccChhHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai 95 (143)
. .++.+.+-++-|.+.+
T Consensus 365 ~---~~~~~~~al~~l~~~l 381 (387)
T PRK07683 365 Y---SIETLKEGLDRLEAFL 381 (387)
T ss_pred C---CHHHHHHHHHHHHHHH
Confidence 3 2455666666665554
No 301
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=60.19 E-value=1.1e+02 Score=25.99 Aligned_cols=95 Identities=5% Similarity=-0.000 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhCC-Cee-EeccC--ceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEec-cc
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLF-IFGTP--ATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHM-HT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~-vlg~p--~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~-h~ 79 (143)
+.+++-+..++|.++++++. .+. ++++. .-.++++... ......+...+.++|=.+.... +...+|.+.|+ ..
T Consensus 320 l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~-~~~~~lr~~p~l~~ 398 (425)
T PRK09264 320 FEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSG-PEDEVVKLLPPLTI 398 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHHHCCCEEeccC-CCCCEEEEeCCCCC
Confidence 34555566777777776531 111 11221 1123333332 2234577888999996664321 11245555544 23
Q ss_pred ChhHHHHHHHHHHHHHHHHHcC
Q psy10208 80 QPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+++.++++++-|+++++.+...
T Consensus 399 t~~ei~~~~~~l~~~l~~~~~~ 420 (425)
T PRK09264 399 DEEELEEGLDILEEAVAEVLAE 420 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999887544
No 302
>PF05166 YcgL: YcgL domain; InterPro: IPR007840 This family of proteins formerly called DUF709 includes the Escherichia coli gene ycgL. Homologues of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure []. The proteins in this entry are functionally uncharacterised.; PDB: 2H7A_A.
Probab=60.09 E-value=11 Score=24.79 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=21.6
Q ss_pred eccCceeEEEEecC------CCCHHHHHHHHhhcCceecCC
Q psy10208 30 FGTPATSVIALGSD------VFHIYRLSSGLNKRGWNTNSL 64 (143)
Q Consensus 30 lg~p~l~vVaf~~~------~~~i~~l~d~L~~rGW~v~~~ 64 (143)
+|.|+. |.-|..+ ..|+-.|-+.|+++||+++.+
T Consensus 33 fG~p~~-vm~l~L~~~r~La~~d~~~V~~~l~~~GfyLQ~P 72 (74)
T PF05166_consen 33 FGKPQF-VMELNLTPERKLARADAEKVLAALEEQGFYLQMP 72 (74)
T ss_dssp H-SEEE-EEEE-SSS----SSS-HHHHHHHHHHTSEEEE--
T ss_pred cCCCeE-EEEecCCCCceeccCCHHHHHHHHHhCCEEEecC
Confidence 466654 3334332 589999999999999999753
No 303
>PRK08636 aspartate aminotransferase; Provisional
Probab=59.49 E-value=1e+02 Score=25.57 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC----CCCHHHHHHH-HhhcCceecCCC-C----CCeeeEEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD----VFHIYRLSSG-LNKRGWNTNSLQ-F----PVGIHICIT 75 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~----~~~i~~l~d~-L~~rGW~v~~~~-~----P~~ihi~v~ 75 (143)
.+.+.+..+.+.+.|++. |+.+. .|.-..+.| +.+ ..+-.++++. +++.|+.+.... + +..+||++.
T Consensus 304 ~~~~~~~~~~l~~~L~~~-~~~~~-~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~ 381 (403)
T PRK08636 304 RETYRKRRDVLIESFANA-GWELQ-KPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI 381 (403)
T ss_pred HHHHHHHHHHHHHHHHHC-CCccc-CCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec
Confidence 344455666778888886 66543 343333333 333 2345678776 557899886542 1 356888885
Q ss_pred ecccChhHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. ..+.+++-++-|++.++.
T Consensus 382 ~---~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 382 E---NENRIRQAARNIKKFLKE 400 (403)
T ss_pred C---CHHHHHHHHHHHHHHHHh
Confidence 2 346666667777666654
No 304
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=59.19 E-value=97 Score=26.97 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhhCC---CeeEe-cc-CceeEEEEecCCC---------C---HHHHHHHHhhcCceecCCCCCC
Q psy10208 6 TTRSIIETVKYIEKELRSMD---GLFIF-GT-PATSVIALGSDVF---------H---IYRLSSGLNKRGWNTNSLQFPV 68 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~---g~~vl-g~-p~l~vVaf~~~~~---------~---i~~l~d~L~~rGW~v~~~~~P~ 68 (143)
..+++.+..++|.++|+++. |+.++ ++ ..+--+-|..+.. | ...+...|.++|-.+.....|.
T Consensus 369 ~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~ 448 (474)
T PLN02482 369 TYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA 448 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC
Confidence 44566677888888887751 23333 33 2333444554211 1 2357788899998776544333
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. .+...| +++.+|++++-+++++..
T Consensus 449 ~---~psl~h-t~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 449 G---FTSLAH-TEEDIDFTIAAAERVLAR 473 (474)
T ss_pred C---cCCCCC-CHHHHHHHHHHHHHHHHh
Confidence 1 133334 468999999999988764
No 305
>PRK13724 conjugal transfer protein TrbD; Provisional
Probab=58.89 E-value=6.6 Score=24.75 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.1
Q ss_pred hccCCCcchHHHHHHHHHHhh
Q psy10208 116 SHSIPDRSIIGDFTRYYIDAT 136 (143)
Q Consensus 116 ~~~ipd~~~v~~~~~~~~d~~ 136 (143)
+-++||+++-++|+...|..|
T Consensus 11 ~~SVpdktVsDDF~h~VlSNC 31 (65)
T PRK13724 11 ARSVPDKSVSDDFMHAVLSNC 31 (65)
T ss_pred eeecCCccccHHHHHHHHhcC
Confidence 468999999999999999887
No 306
>PF05213 Corona_NS2A: Coronavirus NS2A protein; InterPro: IPR007878 This entry is represented by Coronavirus non-structural protein 2A (32kDa); it is a family of uncharacterised viral proteins. Members have a phosphoesterase module (2H) [] and are predicted to be involved in RNA modification. The viral group of 2H phosphoesterases contains proteins from two unrelated virus types: the type C rotaviruses (VP3 protein, IPR011181 from INTERPRO) that are double stranded multipartite RNA viruses and the coronaviruses (NS2 protein, this group) that are positive strand RNA viruses. Given that these viruses have vertebrate hosts, it is likely that the 2H phosphoesterase domain was derived from the host by one of virus groups followed by rapid sequence divergence []. Subsequently, it may have been exchanged between the viral families. Although the direction of the exchange is not clear, it is possible that a double stranded replicative form of a subgenomic RNA transcript of the coronavirus NS2 was stabilised by a rotavirus and incorporated into its multiple double stranded RNA genome []. These proteins can be utilised as novel drug targets because of their predicted RNA modification role.
Probab=58.87 E-value=13 Score=29.51 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=46.8
Q ss_pred ceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 34 ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 34 ~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.+|++.|..=-.+.++|.-+|-+.|.-.-.+..| |++++..+++.+++..-..+|++.+++..
T Consensus 11 n~Pl~~f~~f~~~~~~LQ~~~~~eG~d~k~QkaP---HlSl~mL~Isd~~i~~V~~~iq~ViddM~ 73 (248)
T PF05213_consen 11 NFPLVQFEGFMLNFKDLQFQLLEEGVDCKLQKAP---HLSLGMLDISDEDIPDVETAIQKVIDDMV 73 (248)
T ss_pred eccchhhhhHHHHHHHHHHHHHHcCCCccccccC---eeEEEEEEcChhhhhhHHHHHHHHHHHhh
Confidence 3678877554457889999999999866554444 67777678878888888888888888764
No 307
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=58.06 E-value=1.2e+02 Score=26.04 Aligned_cols=89 Identities=7% Similarity=-0.047 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCC-CC---HHHHHHHHhhcCceecCCCCCCeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDV-FH---IYRLSSGLNKRGWNTNSLQFPVGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~-~~---i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~ 77 (143)
+.+++.+..++|.++|+++.....+++ --+..|-|..+. .+ .-.+..++.++|-.+.... -.+.++|+
T Consensus 350 l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~g----~~l~~~Pp 425 (453)
T PRK06943 350 VLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPIG----TTVYLMPP 425 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEecC----CEEEEeCC
Confidence 345555667788888877522222322 223333343221 11 2357788889997765322 23556655
Q ss_pred cc-ChhHHHHHHHHHHHHHHHH
Q psy10208 78 HT-QPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~-~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+ +++.++++++-|+++++++
T Consensus 426 l~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 426 YVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred CcCCHHHHHHHHHHHHHHHHHH
Confidence 43 5789999999999999876
No 308
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=57.92 E-value=52 Score=28.03 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=61.8
Q ss_pred HHHHHHHhhCCCeeEec-cCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHH
Q psy10208 15 KYIEKELRSMDGLFIFG-TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 15 ~~l~~~i~~i~g~~vlg-~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
.+|.++|++||+++++. -..+|||. -..++ ..|.+.|.+.+|.+. ++ .|+ ++..++=...++
T Consensus 178 ~~ll~~L~~IpHv~iiRi~TR~pvv~--P~RIt-~~L~~~l~~~~~~v~-----------~~-tH~--NHp~Eit~e~~~ 240 (369)
T COG1509 178 EWLLKRLRAIPHVKIIRIGTRLPVVL--PQRIT-DELCEILGKSRKPVW-----------LV-THF--NHPNEITPEARE 240 (369)
T ss_pred HHHHHHHhcCCceeEEEeecccceec--hhhcc-HHHHHHHhccCceEE-----------EE-ccc--CChhhcCHHHHH
Confidence 57889999999999874 35566653 11222 467777777665544 33 366 577888888899
Q ss_pred HHHHHHcCCCCCCCChhhHHhhhccCCCc-chHHHHHHHHHHh
Q psy10208 94 ELAIIMQNPGLQLEGVMAMYGKSHSIPDR-SIIGDFTRYYIDA 135 (143)
Q Consensus 94 ai~~~~~~p~~~~~~~a~~Yg~~~~ipd~-~~v~~~~~~~~d~ 135 (143)
|++.+++..-.-..-+. +.-.|.|. ++..+++..+++.
T Consensus 241 A~~~L~~aGv~l~NQsV----LLrGVND~~evl~~L~~~L~~~ 279 (369)
T COG1509 241 ACAKLRDAGVPLLNQSV----LLRGVNDDPEVLKELSRALFDA 279 (369)
T ss_pred HHHHHHHcCceeecchh----eecccCCCHHHHHHHHHHHHHc
Confidence 99999886532111111 11344443 5556666666665
No 309
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.76 E-value=22 Score=21.67 Aligned_cols=31 Identities=6% Similarity=0.187 Sum_probs=23.9
Q ss_pred CceeEEEEecCCCCHHHHHHHHhhcCceecC
Q psy10208 33 PATSVIALGSDVFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 33 p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~ 63 (143)
+....+.|+.+..|..++.+.|+++||.+..
T Consensus 40 ~~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 40 EDNKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred CCeEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3466777877655666999999999998864
No 310
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=57.66 E-value=65 Score=22.73 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=37.8
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCC-------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQF-------PVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
-.||+|. -+-++|+++|+..+.... -..-|+.|.|.|.-.+.. + +||.+.++.++ +|
T Consensus 36 ~~afts~-----~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e--~-~di~~~v~~~~-~~ 99 (127)
T cd03412 36 RWAFTSR-----MIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEE--Y-EKLKREVDAFK-KG 99 (127)
T ss_pred EEEecHH-----HHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHH--H-HHHHHHHHHHh-CC
Confidence 3578762 445666677766554321 122489999999876633 4 89999999888 44
No 311
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=57.63 E-value=32 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=24.9
Q ss_pred EeccCceeEEEEecCCCCHHHHHHHHhhcCceec
Q psy10208 29 IFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62 (143)
Q Consensus 29 vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~ 62 (143)
.-|||. +-+.||... ...|+++|.++|+.++
T Consensus 12 t~gDP~-s~lrWT~~S--~~~la~~L~~~G~~vS 42 (311)
T PF07592_consen 12 TRGDPM-SPLRWTRKS--TRKLAEELRRQGHPVS 42 (311)
T ss_pred ccCCCC-CCeeeeecc--HHHHHHHHHHcCCCcc
Confidence 358898 777887754 8899999999999844
No 312
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=57.13 E-value=1.3e+02 Score=26.02 Aligned_cols=93 Identities=10% Similarity=-0.001 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEecc----CceeEEEEecCC----------CC---HHHHHHHHhhcCceecCCCCC
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIFGT----PATSVIALGSDV----------FH---IYRLSSGLNKRGWNTNSLQFP 67 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vlg~----p~l~vVaf~~~~----------~~---i~~l~d~L~~rGW~v~~~~~P 67 (143)
..+++.+..++|.++|+++ ..+.++++ .-+--|-|..+. .+ ...+...+.++|-.+.... +
T Consensus 351 l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~ 429 (464)
T PRK06938 351 LAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGG-R 429 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecC-C
Confidence 4456666677788887765 22333333 333344453321 01 2356777888996664321 1
Q ss_pred CeeeEEEEec-ccChhHHHHHHHHHHHHHHHHH
Q psy10208 68 VGIHICITHM-HTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 68 ~~ihi~v~~~-h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.+-.+.+.|+ .++++.++.+++-+++++..+.
T Consensus 430 ~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 430 HGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred CCCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 1223445544 3367899999999999987654
No 313
>PRK06149 hypothetical protein; Provisional
Probab=56.47 E-value=1.4e+02 Score=28.37 Aligned_cols=90 Identities=12% Similarity=-0.025 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecC----CCC---HHHHHHHHhhcCceecCCCCCCeeeEEE
Q psy10208 7 TRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSD----VFH---IYRLSSGLNKRGWNTNSLQFPVGIHICI 74 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~----~~~---i~~l~d~L~~rGW~v~~~~~P~~ihi~v 74 (143)
.+++.+..++|.++|+++. .+.++++ .-+--|-|..+ .-+ ...+.++|.++|-.+... .+..-.+.+
T Consensus 868 ~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~-g~~~~vl~~ 946 (972)
T PRK06149 868 QENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPT-GDHLNILKI 946 (972)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeec-CCCCCEEEE
Confidence 3445555678888887652 1223333 22222333221 111 357889999999766543 222233666
Q ss_pred Eecc-cChhHHHHHHHHHHHHHHH
Q psy10208 75 THMH-TQPGVADKFISDVREELAI 97 (143)
Q Consensus 75 ~~~h-~~~~~~~~fl~Dl~~ai~~ 97 (143)
+|+. ++++.++.+++-|.+++.+
T Consensus 947 ~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 947 KPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHh
Confidence 6763 3679999999999998864
No 314
>PRK07046 aminotransferase; Validated
Probab=55.66 E-value=1.4e+02 Score=25.81 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHhh----CC-CeeEeccCceeEEEEecCC-C---------C--H-HHHHHHHhhcCceecCCCCC
Q psy10208 6 TTRSIIETVKYIEKELRS----MD-GLFIFGTPATSVIALGSDV-F---------H--I-YRLSSGLNKRGWNTNSLQFP 67 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~----i~-g~~vlg~p~l~vVaf~~~~-~---------~--i-~~l~d~L~~rGW~v~~~~~P 67 (143)
..+++.+..++|.++|++ .+ -..+-|-..+.-+.|..+. . | + ..+...|.++|-.+..
T Consensus 346 ~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~---- 421 (453)
T PRK07046 346 AYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITP---- 421 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEec----
Confidence 345556667777777765 22 1234454444445554321 1 2 1 2456778889977653
Q ss_pred CeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 68 VGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 68 ~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..-.+.++++| +++.++.+++-++++++.+.
T Consensus 422 ~~~~~~~~p~~-t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 422 FHNMMLVCPAT-TAADVDRLVAAFDACLGELL 452 (453)
T ss_pred ccCcEEEeCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 22234566766 47899999999999987764
No 315
>PHA01735 hypothetical protein
Probab=54.87 E-value=19 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCC-CCCChhhHHhhhccCCC
Q psy10208 90 DVREELAIIMQNPGL-QLEGVMAMYGKSHSIPD 121 (143)
Q Consensus 90 Dl~~ai~~~~~~p~~-~~~~~a~~Yg~~~~ipd 121 (143)
||+.+++.+++|.-. ......++-.+++.+|+
T Consensus 34 DL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~ 66 (76)
T PHA01735 34 DLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQ 66 (76)
T ss_pred HHHHHHHHHHHCCCceeeCCCCHHHHHHhcCcc
Confidence 999999999998743 33334556667778884
No 316
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=54.72 E-value=28 Score=22.40 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHhhcCceecCCC-------CCCeeeEEEEecccCh
Q psy10208 44 VFHIYRLSSGLNKRGWNTNSLQ-------FPVGIHICITHMHTQP 81 (143)
Q Consensus 44 ~~~i~~l~d~L~~rGW~v~~~~-------~P~~ihi~v~~~h~~~ 81 (143)
.++.-++...|.+-||++.++. .|.+.+++| |.|-.+
T Consensus 6 ~~~~ke~ik~Le~~Gf~~vrqkGSH~q~kHp~~~~vtV-P~Hp~~ 49 (66)
T COG1724 6 RMKAKEVIKALEKDGFQLVRQKGSHRQYKHPDGGRVTV-PFHPGE 49 (66)
T ss_pred cCCHHHHHHHHHhCCcEEEEeecceeEEEcCCCCEEEe-cCCCcc
Confidence 4567789999999999998863 377666766 567654
No 317
>PF09407 DUF2005: Protein of unknown function (DUF2005); InterPro: IPR018547 This is a family of proteins with unknown function. ; PDB: 1ZEL_B.
Probab=54.08 E-value=11 Score=30.20 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHhhcCceecCCCC
Q psy10208 44 VFHIYRLSSGLNKRGWNTNSLQF 66 (143)
Q Consensus 44 ~~~i~~l~d~L~~rGW~v~~~~~ 66 (143)
+-+-+.++++||+.||.++..|.
T Consensus 65 ~~~~~~~arrLR~~GWLl~tpqr 87 (315)
T PF09407_consen 65 ERQPYSIARRLRRIGWLLQTPQR 87 (315)
T ss_dssp -S-HHHHHHHHHHTTSEEE-SST
T ss_pred CCCHHHHHHHHHHhcceeecCcC
Confidence 45789999999999999999885
No 318
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=54.06 E-value=66 Score=21.71 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHhh-cCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCCCCCCC-ChhhHHhhhccCCC
Q psy10208 44 VFHIYRLSSGLNK-RGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLE-GVMAMYGKSHSIPD 121 (143)
Q Consensus 44 ~~~i~~l~d~L~~-rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~~~~-~~a~~Yg~~~~ipd 121 (143)
.++--++...|.. -||.+... |..|+=.+.-. +..-.-.|++.+....+....||.-..+ +...+.=.++.+..
T Consensus 5 ~Ls~~ei~~~l~~l~gW~~~~~--~~~l~r~f~f~--~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~V~v~l~Th~~~g 80 (97)
T PRK00823 5 KLSDEEIAELLPQLPGWTLVGD--RDAIERTFKFK--NFNEAFAFMNRVAEIAEEEDHHPDWFNVYNRVTVTLTTHDAGG 80 (97)
T ss_pred CCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeC--CHHHHHHHHHHHHHHHHHcCCCCCEEEEcCEEEEEEEeCCCCC
Confidence 3455677777776 59999532 44565444322 2357888999999999999999965322 12222212234433
Q ss_pred cchHHHHHHHHHHhhc
Q psy10208 122 RSIIGDFTRYYIDATY 137 (143)
Q Consensus 122 ~~~v~~~~~~~~d~~y 137 (143)
-+-.|-.++..+|.++
T Consensus 81 lT~~D~~lA~~id~~~ 96 (97)
T PRK00823 81 LTENDFILAAKIDALA 96 (97)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 4556788888888765
No 319
>PRK08960 hypothetical protein; Provisional
Probab=53.79 E-value=1.2e+02 Score=24.82 Aligned_cols=67 Identities=9% Similarity=0.058 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC--CCCHHHHHHHH-hhcCceecCCC------CCCeeeEEEEe
Q psy10208 9 SIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD--VFHIYRLSSGL-NKRGWNTNSLQ------FPVGIHICITH 76 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~--~~~i~~l~d~L-~~rGW~v~~~~------~P~~ihi~v~~ 76 (143)
...+..+.+.+.|++. |+.+...|.-..+.|- .+ ..+..++++.| +++|..+.... .+..+|+++..
T Consensus 293 ~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~ 369 (387)
T PRK08960 293 EFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ 369 (387)
T ss_pred HHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC
Confidence 3445566788888887 6665445655455443 32 35678888876 46898886531 13468898874
No 320
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=53.46 E-value=1.4e+02 Score=25.27 Aligned_cols=89 Identities=6% Similarity=-0.031 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEeccC----ceeEEEEecCC------CCHHHHHHHHhhcCceecCC-CCCCeeeEE
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGTP----ATSVIALGSDV------FHIYRLSSGLNKRGWNTNSL-QFPVGIHIC 73 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~p----~l~vVaf~~~~------~~i~~l~d~L~~rGW~v~~~-~~P~~ihi~ 73 (143)
..+++.+..+++.++|+++. .+-.++++ -+-.|-|..+. .....+...|.++|-.+... +.+..++
T Consensus 319 ~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~ir-- 396 (421)
T PRK09792 319 LCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIR-- 396 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEE--
Confidence 44555566777777776531 12223333 22333343221 23456788889999777421 2233444
Q ss_pred EEecc-cChhHHHHHHHHHHHHHH
Q psy10208 74 ITHMH-TQPGVADKFISDVREELA 96 (143)
Q Consensus 74 v~~~h-~~~~~~~~fl~Dl~~ai~ 96 (143)
+.|+. ++++.++++++-|.+++.
T Consensus 397 l~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 397 FLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHh
Confidence 45444 567899999988888763
No 321
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=52.96 E-value=1.5e+02 Score=25.43 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-C--CeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSM-D--GLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i-~--g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~ 76 (143)
.++=++.+..+.++.+-++.. + +|++... -.-+=|+|..+ +-|.+...|-+||-... +..|.-+|+.++|
T Consensus 305 ~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp--~~~~V~qaLi~rGVigD-~R~P~vlRfgftP 381 (407)
T COG3844 305 TELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP--HGYQVMQALIDRGVIGD-FREPDVLRFGFTP 381 (407)
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC--cHHHHHHHHHHcCcccc-ccCCCeeeecCcc
Confidence 456678888999999888763 3 5676643 24567888887 58999999999997655 4568889999999
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.-++...+..-++-|+++++.+
T Consensus 382 lY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 382 LYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred ceechhHHHHHHHHHHHHHHhh
Confidence 9988777777777777777654
No 322
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=52.80 E-value=1.2e+02 Score=24.48 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=36.8
Q ss_pred CceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 33 PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 33 p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+..+-+.++.. +..++.+.|.++|..+.... .+..+|+++.. .+.++++++-|++++
T Consensus 296 ~~g~f~~~~~~--~~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~~----~~~~~~~l~~L~~~l 355 (357)
T PRK14809 296 SAGNFVLAEVG--DASAVAEAAQERGVIVRDCTSFGLPECIRITCGT----REETERAVEVLNEVL 355 (357)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHCCEEEEECccCCCCCeEEEecCC----HHHHHHHHHHHHHHh
Confidence 34334444432 45688899999998776543 35678887642 367777777777654
No 323
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=52.41 E-value=1.5e+02 Score=25.38 Aligned_cols=91 Identities=9% Similarity=0.067 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CC-------CCHHHHHHHHh-hcCceecCCC-----CCCeeeE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DV-------FHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHI 72 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~-------~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi 72 (143)
.+++.+..+.+.+.|++. |+..+ .|.-..+.|-. +. ....++.++|. +.|..+.+.. .|.-+||
T Consensus 337 r~~l~~~~~~~~~~L~~~-gi~~~-~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi 414 (447)
T PLN02607 337 RERLRKRYEMIVQGLRRA-GIECL-KGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRV 414 (447)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCcc-cCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEE
Confidence 344555666778888886 66643 35545555532 21 11346676665 4799887643 2677999
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
++.. ..++.+++-++-|+++++.-+..
T Consensus 415 ~fa~--~~~~~l~~gl~Ri~~~l~~~~~~ 441 (447)
T PLN02607 415 CFAN--MSEDTLEVALKRIHRFMDRRKTA 441 (447)
T ss_pred Eecc--CCHHHHHHHHHHHHHHHHHHHhh
Confidence 9984 23478888888888887655443
No 324
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=52.25 E-value=1.4e+02 Score=24.85 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCc-eeEEEEecC-CCCHHHHHHHHh-hcCceecCCC-C----CCeeeEEEEecc
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPA-TSVIALGSD-VFHIYRLSSGLN-KRGWNTNSLQ-F----PVGIHICITHMH 78 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~-l~vVaf~~~-~~~i~~l~d~L~-~rGW~v~~~~-~----P~~ihi~v~~~h 78 (143)
.+...+..+.+.+.|++. |+++. .|. ..-+-++.+ .++..++...|. +.|+.+.... + ...+||++.
T Consensus 318 ~~~~~~~r~~l~~~L~~~-~~~~~-~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--- 392 (409)
T PRK07590 318 IDYYMENAKIIREGLESA-GFEVY-GGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAF--- 392 (409)
T ss_pred HHHHHHHHHHHHHHHHhc-CCcee-cCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEcc---
Confidence 445556677788899887 67754 333 223323332 456678887775 5799875432 1 235777753
Q ss_pred cChhHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREE 94 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~a 94 (143)
.+++.+++.++-|.++
T Consensus 393 ~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 393 GSRENVLEAMERIKKA 408 (409)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 2345666666666543
No 325
>PRK14432 acylphosphatase; Provisional
Probab=52.15 E-value=34 Score=23.10 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=34.8
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ .-++.+|.+|.=.||.-|. +.+ +.+.+.- -.++.+++|+++|++
T Consensus 14 GVGFR---~~v~~~A~~lgl~G~V~N~---~dG~Vei~~~~--G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 14 GVGFR---FFTEQIANNMKLKGFVKNL---NDGRVEIVAFF--NTKEQMKKFEKLLKN 63 (93)
T ss_pred Ceeeh---HHHHHHHHHhCCEEEEEEC---CCCCEEEEEEE--CCHHHHHHHHHHHHh
Confidence 46664 3578999999999999874 444 7877751 124778888877765
No 326
>PRK06917 hypothetical protein; Provisional
Probab=51.85 E-value=1.5e+02 Score=25.34 Aligned_cols=96 Identities=19% Similarity=0.124 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecC-----CC--C---HHHHHHHHhhcCceecCCC-C---
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSD-----VF--H---IYRLSSGLNKRGWNTNSLQ-F--- 66 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~-----~~--~---i~~l~d~L~~rGW~v~~~~-~--- 66 (143)
+.+++.+..++|.++|+++. .+.++++ .-+.-|-|..+ .. + ...+...|.++|-.+.... .
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g 405 (447)
T PRK06917 326 LPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDG 405 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCC
Confidence 34566667778888887752 1333333 33444445432 11 1 2356778889997764321 1
Q ss_pred CCeeeEEEEecc-cChhHHHHHHHHHHHHHHHHHcC
Q psy10208 67 PVGIHICITHMH-TQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 67 P~~ihi~v~~~h-~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+.+-.+.++|+. ++++.++.+++-|.+++..+.+.
T Consensus 406 ~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~ 441 (447)
T PRK06917 406 KEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQK 441 (447)
T ss_pred CCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 112345566662 35789999999999999888543
No 327
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=51.52 E-value=1.5e+02 Score=25.22 Aligned_cols=90 Identities=10% Similarity=-0.013 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecCC--------C----C-HHHHHHHHhhcCceecCCC-CC
Q psy10208 7 TRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSDV--------F----H-IYRLSSGLNKRGWNTNSLQ-FP 67 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~~--------~----~-i~~l~d~L~~rGW~v~~~~-~P 67 (143)
.++.-+...+|.++|+++- .+.++++ --+--|-|..+. . + ...+...|.++|-.+.... ..
T Consensus 327 ~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~ 406 (442)
T TIGR00709 327 AQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREG 406 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCC
Confidence 4455566777788877642 2333444 233334453321 1 1 2456777888997664321 12
Q ss_pred CeeeEEEEecc-cChhHHHHHHHHHHHHHHHH
Q psy10208 68 VGIHICITHMH-TQPGVADKFISDVREELAII 98 (143)
Q Consensus 68 ~~ihi~v~~~h-~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+++ .|+. ++++.++++++-+++++.++
T Consensus 407 ~~l~~--~Ppl~it~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 407 EVFRL--LCPITIDQEECEEGISRFKQAVEEA 436 (442)
T ss_pred CEEEE--ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33444 4443 36789999999999998766
No 328
>PRK07482 hypothetical protein; Provisional
Probab=51.43 E-value=1.6e+02 Score=25.37 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEe----ccCceeEEEEecC-----CCC-----HHHHHHHHhhcCceecCCCCCCee
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIF----GTPATSVIALGSD-----VFH-----IYRLSSGLNKRGWNTNSLQFPVGI 70 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vl----g~p~l~vVaf~~~-----~~~-----i~~l~d~L~~rGW~v~~~~~P~~i 70 (143)
+.+++.+..++|.++|+++ ..+.++ |..-+--|-|..+ .++ ...+...|.++|-.+.. .|.+-
T Consensus 349 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~--~~~~~ 426 (461)
T PRK07482 349 LVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARA--MPHGD 426 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEec--CCCCC
Confidence 3455566777888888653 122223 3333444545432 122 24677888999966532 22223
Q ss_pred eEEEEec-ccChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHM-HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~-h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+.++|+ .++++.++++++-|++++..+
T Consensus 427 ~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 427 ILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555544 346889999999999998776
No 329
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=50.28 E-value=1.6e+02 Score=24.95 Aligned_cols=87 Identities=9% Similarity=-0.056 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhhC----CCeeEeccCceeEEE--EecCC--CC----HHHHHHHHhhcCceecCC-CCCCeeeE
Q psy10208 6 TTRSIIETVKYIEKELRSM----DGLFIFGTPATSVIA--LGSDV--FH----IYRLSSGLNKRGWNTNSL-QFPVGIHI 72 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i----~g~~vlg~p~l~vVa--f~~~~--~~----i~~l~d~L~~rGW~v~~~-~~P~~ihi 72 (143)
+.+++.+..++|.++|+++ +.+.-+ .+.-..++ |..+. .+ ...+..+|.++|-.+... .....+|+
T Consensus 319 l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~ 397 (421)
T PRK06777 319 LCQRALILGAHLVEVLEKAKASCPAIVDI-RARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRF 397 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEE
Confidence 4556667788888888775 322211 23333334 43321 11 234556667889666432 22333454
Q ss_pred EEEec-ccChhHHHHHHHHHHHHH
Q psy10208 73 CITHM-HTQPGVADKFISDVREEL 95 (143)
Q Consensus 73 ~v~~~-h~~~~~~~~fl~Dl~~ai 95 (143)
.|+ .++++.+++.++-|++++
T Consensus 398 --~ppl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 398 --LYPLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred --eCCCCCCHHHHHHHHHHHHHHH
Confidence 454 456788999998888775
No 330
>PF11193 DUF2812: Protein of unknown function (DUF2812); InterPro: IPR021359 This is a bacterial family of uncharacterised proteins, however some members of this family are annotated as membrane proteins.
Probab=49.85 E-value=49 Score=22.60 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHHHHHhhcCceecCCC---------CCCeeeEEEEec-ccChhHHHHHHHHHHHH
Q psy10208 49 RLSSGLNKRGWNTNSLQ---------FPVGIHICITHM-HTQPGVADKFISDVREE 94 (143)
Q Consensus 49 ~l~d~L~~rGW~v~~~~---------~P~~ihi~v~~~-h~~~~~~~~fl~Dl~~a 94 (143)
.+-+.|.++||++.... .|...+..|... ....+-.+.+++-.+++
T Consensus 8 ~wL~ema~kGw~l~~~~~~~~~F~k~ep~~~~Y~vd~~~~~~~~~~~~y~~~~e~~ 63 (115)
T PF11193_consen 8 QWLNEMAAKGWHLKKIGGFGYTFEKGEPKDYRYRVDFNDPKSKEEQKEYLEFFEEA 63 (115)
T ss_pred HHHHHHHHCCCeEEEecceEEEEEECCCceEEEEEEEccccchhhhHHHHHHHHHC
Confidence 45678889999997753 377777766654 22234555555555554
No 331
>PLN00108 unknown protein; Provisional
Probab=49.84 E-value=34 Score=27.71 Aligned_cols=81 Identities=11% Similarity=0.199 Sum_probs=47.3
Q ss_pred hcCceecCCCCCCeeeEEEEecccC----hhHHHHHHHHHHHHHHHHHc-CCC-----------CCCCChhhHHhhhccC
Q psy10208 56 KRGWNTNSLQFPVGIHICITHMHTQ----PGVADKFISDVREELAIIMQ-NPG-----------LQLEGVMAMYGKSHSI 119 (143)
Q Consensus 56 ~rGW~v~~~~~P~~ihi~v~~~h~~----~~~~~~fl~Dl~~ai~~~~~-~p~-----------~~~~~~a~~Yg~~~~i 119 (143)
.+||--+..+.|..+|+++...+.. .+.+-++|++++..+..+-+ .|- ..++..-.+|.-....
T Consensus 78 ~~gid~siF~~p~~LHLTLgmL~L~~~eev~kA~~~L~s~~~~i~~~l~~~pl~I~lkGL~~Mnddps~~~VLYA~Ve~~ 157 (257)
T PLN00108 78 EMGIEKSIFVSPKTFHLTVVMLKLENNESVVKAQNILKSICSNVRQALKDRPVFIRLRGLDCMNGSLDKTRVLYAPVEEV 157 (257)
T ss_pred ccCCCHHHcCCCCceEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEEeehhcCCCcccceEEEEecccc
Confidence 3577777778899999888765553 34566667777666655543 231 0111123367544443
Q ss_pred CC--c--chHHHHHHHHHHhh
Q psy10208 120 PD--R--SIIGDFTRYYIDAT 136 (143)
Q Consensus 120 pd--~--~~v~~~~~~~~d~~ 136 (143)
.. + .+.+.+...|+++=
T Consensus 158 ~~~~rLq~~ad~i~~~F~~aG 178 (257)
T PLN00108 158 GHEGRLLNACHVIIDAFENAG 178 (257)
T ss_pred CchhHHHHHHHHHHHHHHHcC
Confidence 21 1 45667778888873
No 332
>KOG1404|consensus
Probab=49.64 E-value=1.6e+02 Score=25.65 Aligned_cols=93 Identities=16% Similarity=0.030 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-CCeeEeccCc---e-eEEEEecC--------CCCHHHHHHHHhhcCceecCCCCCCee
Q psy10208 4 VNTTRSIIETVKYIEKELRSM-DGLFIFGTPA---T-SVIALGSD--------VFHIYRLSSGLNKRGWNTNSLQFPVGI 70 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i-~g~~vlg~p~---l-~vVaf~~~--------~~~i~~l~d~L~~rGW~v~~~~~P~~i 70 (143)
.+++++.-+...+|.++|.++ +++.++||-. + --|=|-++ ..-...+.+.+.+.|-.+..-..-. .
T Consensus 332 e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G-~ 410 (442)
T KOG1404|consen 332 ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHG-N 410 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccc-e
Confidence 357788888999999999886 4678888842 1 11222221 1233467789999999996554333 3
Q ss_pred eEEEEeccc-ChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHT-QPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h~-~~~~~~~fl~Dl~~ai~~~ 98 (143)
++-+.|+.+ +.+.+ +|+.++-+.+...
T Consensus 411 vfriaPPlciT~edi-~f~~~~~~~~~~~ 438 (442)
T KOG1404|consen 411 VFRIAPPLCITKEDI-DFAVEYFEVLTST 438 (442)
T ss_pred EEEecCCeeccHHHH-HHHHHHHHHHhHH
Confidence 777788777 45566 7777766555443
No 333
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=49.41 E-value=17 Score=23.55 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCceecCCCCCC-eeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 47 IYRLSSGLNKRGWNTNSLQFPV-GIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~~P~-~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
...++..|.+.||.|-++-.+. +.-- =.+.++ +-.+.+++|+...+
T Consensus 32 y~~~a~~L~~~G~~V~~~D~rGhG~S~-g~rg~~--~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 32 YAHLAEFLAEQGYAVFAYDHRGHGRSE-GKRGHI--DSFDDYVDDLHQFI 78 (79)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCCC-Cccccc--CCHHHHHHHHHHHh
Confidence 5589999999999998864321 1000 012233 56889999998765
No 334
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=48.86 E-value=43 Score=21.41 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=42.3
Q ss_pred CceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCCCCCCC-ChhhHHhhhccCCCcchHHHHHHHHHHh
Q psy10208 58 GWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLE-GVMAMYGKSHSIPDRSIIGDFTRYYIDA 135 (143)
Q Consensus 58 GW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~~~~-~~a~~Yg~~~~ipd~~~v~~~~~~~~d~ 135 (143)
||.+.. |..++-.+.-. +..-.-+|+..+.+..++...+|+-..+ +...+-=.++++..-+-.|-.++..+|.
T Consensus 1 gW~~~~---~~~l~r~f~f~--~f~~a~~f~~~va~~ae~~~HHP~i~~~~~~V~v~l~Th~~~glt~~D~~lA~~id~ 74 (75)
T cd00488 1 GWELAD---GDALERTFKFK--DFKEAIAFVNRVAELAEALNHHPDISNVYNKVTVTLTTHDAGGLTENDFILAAKIDA 74 (75)
T ss_pred CCcCCC---CCcEEEEEEcC--CHHHHHHHHHHHHHHHHHcCCCCCEEEeeeEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 788865 55565444422 2356779999999999999999964322 1111111122222234456666666654
No 335
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=48.68 E-value=50 Score=28.31 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCcee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNT 61 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v 61 (143)
|+.++-+++-..=+..++-++.+ +-.+|++ +|++.+.++| +.++.+|++.|=++
T Consensus 59 Gf~EVL~~lp~llk~~~~~~~~i----~~~kpD~-~i~IDsPdFn-l~vak~lrk~~p~i 112 (381)
T COG0763 59 GFVEVLGRLPRLLKIRRELVRYI----LANKPDV-LILIDSPDFN-LRVAKKLRKAGPKI 112 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HhcCCCE-EEEeCCCCCc-hHHHHHHHHhCCCC
Confidence 77777777766555555555544 2234555 7888888999 67999999999433
No 336
>PRK09082 methionine aminotransferase; Validated
Probab=48.67 E-value=1.5e+02 Score=24.33 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ec---CCCCHHHHHHHH-hhcCceecCCC-C---C---CeeeEEEE
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GS---DVFHIYRLSSGL-NKRGWNTNSLQ-F---P---VGIHICIT 75 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~---~~~~i~~l~d~L-~~rGW~v~~~~-~---P---~~ihi~v~ 75 (143)
+..-+..+.+.+.|++. |+++. .|+-..+.| +. .+.|..++++.| ++.|..+.... + | ..+|+++.
T Consensus 293 ~~~~~~~~~~~~~L~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~ 370 (386)
T PRK09082 293 AFYQAKRDRFRAALANS-RFKLL-PCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA 370 (386)
T ss_pred HHHHHHHHHHHHHHHhC-CCccc-CCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec
Confidence 34456677788888885 67653 455444444 43 256788999986 67798876542 1 2 35888886
Q ss_pred ecccChhHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDV 91 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl 91 (143)
. .++.+++.++-|
T Consensus 371 ~---~~~~l~~~~~rl 383 (386)
T PRK09082 371 K---QEETLDAAAERL 383 (386)
T ss_pred C---CHHHHHHHHHHH
Confidence 3 234444444443
No 337
>PRK14428 acylphosphatase; Provisional
Probab=47.85 E-value=40 Score=23.06 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=33.2
Q ss_pred CCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 45 FHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 45 ~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
.-++.+|.+|.=.||.-|. +.+ +.+.+.- +++.+++|+++|++
T Consensus 25 ~fv~~~A~~lgL~G~V~N~---~dGsVei~~qG---~~~~i~~fi~~l~~ 68 (97)
T PRK14428 25 YFTVTQARRLGVQGWVRNC---RDGSVELEAQG---SSDAVQALVEQLAI 68 (97)
T ss_pred HHHHHHHHHcCCEEEEEEC---CCCEEEEEEEc---CHHHHHHHHHHHhh
Confidence 3578999999999999874 444 7887763 35789999998873
No 338
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=47.79 E-value=1.6e+02 Score=24.28 Aligned_cols=81 Identities=7% Similarity=-0.082 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCCCCHHHHHHHHh-hcCceecCCC-----------CCCeeeEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDVFHIYRLSSGLN-KRGWNTNSLQ-----------FPVGIHIC 73 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L~-~rGW~v~~~~-----------~P~~ihi~ 73 (143)
.+.+.+..+.+.+.|++. +.+ ..|.-..+.| ..+ .+-.++++.|. +.|-.+.... .+..+||+
T Consensus 300 ~~~~~~~~~~~~~~L~~~--~~~-~~p~~g~f~~~~~~-~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~ 375 (396)
T PRK09147 300 RALYREKFDAVTPILAPV--LDV-QLPDAGFYLWAKVP-GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIA 375 (396)
T ss_pred HHHHHHHHHHHHHHHHHh--cCC-CCCCeeEEEEEECC-CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEE
Confidence 344455556666777763 332 2344333333 333 45677888874 6797764321 13468888
Q ss_pred EEecccChhHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~a 94 (143)
+... .+..++.++-|++.
T Consensus 376 ~~~~---~~~l~~~l~rl~~~ 393 (396)
T PRK09147 376 LVAP---LAECVEAAERIVDF 393 (396)
T ss_pred ecCC---HHHHHHHHHHHHHH
Confidence 8742 34555555555544
No 339
>PLN00175 aminotransferase family protein; Provisional
Probab=46.73 E-value=1.7e+02 Score=24.46 Aligned_cols=87 Identities=8% Similarity=0.091 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC--CC-CHHHHHHHHh-hcCceecCCC--------CCCee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD--VF-HIYRLSSGLN-KRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~--~~-~i~~l~d~L~-~rGW~v~~~~--------~P~~i 70 (143)
.+..+...+.++.+.+.|++. |+.+. .|+-..+.|- .. ++ +-.++++.|. +.|..+.+.. .+..+
T Consensus 312 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~i 389 (413)
T PLN00175 312 EELKRDYSAKKDILVEGLKEV-GFKVY-PSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLV 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEE
Confidence 344555666777888999987 77754 4655554443 22 33 4568888875 6798776531 12368
Q ss_pred eEEEEecccChhHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
||++.. ..+.+++-++-|++.+
T Consensus 390 Rls~~~---~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 390 RFAFCK---DEETLRAAVERMKTKL 411 (413)
T ss_pred EEEEcC---CHHHHHHHHHHHHHHH
Confidence 888873 3466666666666554
No 340
>KOG2040|consensus
Probab=46.46 E-value=1.4e+02 Score=28.09 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=55.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|.+++++++...+-.|+++|+.. |.+++.++=+-.+-++... +.-++-++-.+++-++-..-. ..+-+++-. .++
T Consensus 391 ~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k~fFDTLkI~~~~-s~~~~l~rA~~~~iNlr~~ed-~tigvslDE-Tv~ 466 (1001)
T KOG2040|consen 391 HGLKEIARRVHNLTLILAEGLKNA-GHELQHKPFFDTLKIRCGC-SAEEVLDRAAKRQINLRLVED-GTIGVSLDE-TVT 466 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-chhhccccccceEEEEecC-cHHHHHHHHHhhcCceEEeec-CceEEeecc-ccc
Confidence 488999999999999999999997 6898888755455555543 566777777777755543321 123444433 223
Q ss_pred hhHHHHHHH
Q psy10208 81 PGVADKFIS 89 (143)
Q Consensus 81 ~~~~~~fl~ 89 (143)
...++.++.
T Consensus 467 ~~DvddLl~ 475 (1001)
T KOG2040|consen 467 EKDVDDLLW 475 (1001)
T ss_pred HHHHHHHHH
Confidence 345555444
No 341
>PRK14433 acylphosphatase; Provisional
Probab=46.16 E-value=49 Score=21.98 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=30.8
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
-++.+|.+|.=.||.-|. |.+ +.+.+.- +++.++.|+++|+
T Consensus 19 ~v~~~A~~~~l~G~V~N~---~dG~Vei~~~G---~~~~i~~f~~~l~ 60 (87)
T PRK14433 19 FVQKKARELGLSGYAENL---SDGRVEVVAEG---PKEALERLLHWLR 60 (87)
T ss_pred HHHHHHHHcCCEEEEEEC---CCCCEEEEEEE---CHHHHHHHHHHHh
Confidence 478899999999997664 455 7887764 2467888888875
No 342
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=45.50 E-value=39 Score=28.17 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=46.8
Q ss_pred eEeccC--ceeEEEEecC---CCCHHHHHHHHhhcCceecCCCCCCee----eEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 28 FIFGTP--ATSVIALGSD---VFHIYRLSSGLNKRGWNTNSLQFPVGI----HICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 28 ~vlg~p--~l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~~P~~i----hi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+-+|+| .+++|.++-. +=..+-++.-|+..|+.+..++.|.-+ ||.+....+..+...++++++++..+.
T Consensus 9 ~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~ 87 (397)
T TIGR01499 9 EALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEK 87 (397)
T ss_pred HHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHh
Confidence 345666 4789988753 223567778888999999999988743 466655445555666666666666543
No 343
>COG2107 Predicted periplasmic solute-binding protein [General function prediction only]
Probab=45.43 E-value=37 Score=27.72 Aligned_cols=54 Identities=13% Similarity=0.332 Sum_probs=39.2
Q ss_pred ccChhHHHHHHHHHHHHHHHHHcCCCCCCCChhhHHhhh-ccCCCcchHHHHHHHHHHhh
Q psy10208 78 HTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKS-HSIPDRSIIGDFTRYYIDAT 136 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~~~~p~~~~~~~a~~Yg~~-~~ipd~~~v~~~~~~~~d~~ 136 (143)
-+..+.+++|.++++++++..-+||+.... |-|- ...-|++++..++..|++++
T Consensus 183 ~l~~~~a~~~~~al~~Si~yA~~h~~~a~~-----ya~e~sr~~d~E~~~~fi~~YVNe~ 237 (272)
T COG2107 183 DLPKDTAEAIKDALRKSVEYALKHPDEAIP-----YAMEYSREKDEEVVQRFIDMYVNEY 237 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCHHHHHH-----HHHHHHHhcCHHHHHHHHHHhhhhh
Confidence 455789999999999999999999864322 3332 22237788888888887764
No 344
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=45.24 E-value=76 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHH---hhCCCeeEeccCc
Q psy10208 4 VNTTRSIIETVKYIEKEL---RSMDGLFIFGTPA 34 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i---~~i~g~~vlg~p~ 34 (143)
++..++.++.++.++++| .++.+|++++...
T Consensus 297 ~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~ 330 (417)
T PF01276_consen 297 RELLEEAIELAEEFRKKINRLNDIWGFKVLGPED 330 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccc
Confidence 567788899999999999 6788999886543
No 345
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=44.66 E-value=1.9e+02 Score=24.43 Aligned_cols=88 Identities=8% Similarity=0.047 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhC----CC-eeEeccCceeEEEEecCCC---------C---HHHHHHHHhhcCceecCCCCCC
Q psy10208 6 TTRSIIETVKYIEKELRSM----DG-LFIFGTPATSVIALGSDVF---------H---IYRLSSGLNKRGWNTNSLQFPV 68 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i----~g-~~vlg~p~l~vVaf~~~~~---------~---i~~l~d~L~~rGW~v~~~~~P~ 68 (143)
+.+++-+..++|.++|+++ |. .++.+-..+--+-|..+.. + ...+.+.|.++|-.+.....|
T Consensus 323 l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~- 401 (428)
T PRK12389 323 VYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYE- 401 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCC-
Confidence 4556667788888888763 31 2222222233344543221 1 246778888999777654222
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. +.+. ...+++.++++++-+++++.+
T Consensus 402 ~--~~~~-l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 402 A--WFLT-TAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred C--eeec-CCCCHHHHHHHHHHHHHHHHh
Confidence 2 2232 334578899999988888754
No 346
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=44.59 E-value=95 Score=20.79 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhh--cCc-eecCCCCCCeeeEEEEecc
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNK--RGW-NTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~--rGW-~v~~~~~P~~ihi~v~~~h 78 (143)
|+...-+-+.+.++.|.+.+.+-.-+--+++..+-++.-..+.-.+..+.++|.+ +.+ .......+-.+++.+....
T Consensus 53 g~~~~~~~l~~i~~~l~~~~~~~~~~~r~~~~~f~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 132 (163)
T smart00267 53 GHAVGDELLQEVAQRLSSCLRPGDLLARLGGDEFALLLPETSLEEAIALAERILQQLREPIIIHGIPLYLTISIGVAAYP 132 (163)
T ss_pred CchhHHHHHHHHHHHHHHhcCCCCEEEEecCceEEEEecCCCHHHHHHHHHHHHHHHhCccccCCcEEEEEEEEEEEeCC
Confidence 4455555556667777666655321222344455444332222233444555543 222 2222111223444443321
Q ss_pred cChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 79 TQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.....+++.+.....++...+..+
T Consensus 133 ~~~~~~~~ll~~a~~al~~a~~~~ 156 (163)
T smart00267 133 NPGEDAEDLLKRADTALYQAKKAG 156 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Confidence 123567888998888888877664
No 347
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=44.50 E-value=1.7e+02 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCCCeeEec--cCceeEEEEecCCCCHHHHHHHHhhcCceecC
Q psy10208 14 VKYIEKELRSMDGLFIFG--TPATSVIALGSDVFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 14 a~~l~~~i~~i~g~~vlg--~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~ 63 (143)
.+.+.+..++++.++..+ |.++-||+|.|..-.+.+..+.|+++|=.+..
T Consensus 254 ~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~ 305 (375)
T PRK09627 254 FNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGL 305 (375)
T ss_pred HHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEE
Confidence 334444444444455554 45688999999877788999999998876654
No 348
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=44.03 E-value=95 Score=25.95 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~ 63 (143)
|+.++.+++-..-+.+.+-++.. .+|++ +|...+.+|| ..++.++++.|+.++.
T Consensus 52 G~~evl~~~~~~~~~~~~~~~~~------~~pd~-~i~iD~p~Fn-l~lak~~k~~~~~i~v 105 (347)
T PRK14089 52 GFVDVLPKLFFAKKAIKEMVELA------KQADK-VLLMDSSSFN-IPLAKKIKKAYPKKEI 105 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh------cCCCE-EEEeCCCCCC-HHHHHHHHhcCCCCCE
Confidence 67777777665555444444431 46776 7777888999 4599999999855543
No 349
>PRK14449 acylphosphatase; Provisional
Probab=43.80 E-value=54 Score=21.84 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=31.7
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=+||.-| .+.+ +.+.+.- +++-+++|+++|++
T Consensus 21 fv~~~A~~lgl~G~V~N---~~dG~Vei~~~G---~~~~v~~f~~~l~~ 63 (90)
T PRK14449 21 SVYQKAVSLGITGYAEN---LYDGSVEVVAEG---DEENIKELINFIKT 63 (90)
T ss_pred HHHHHHHHcCCEEEEEE---CCCCeEEEEEEe---CHHHHHHHHHHHhh
Confidence 47889999999999766 3554 7877764 34678888888875
No 350
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=43.55 E-value=65 Score=27.94 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec--CCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS--DVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
+.+.--..-..|.++++++ +-.|...+|.|-|.. +.--..+..+.+++||-. |.+.++.++.
T Consensus 24 v~~sw~rll~~l~~~~~~i---~~~G~~~IP~i~f~di~~~~~~~~~~~~ir~rG~~-------------VIR~Vvp~~e 87 (416)
T PF07350_consen 24 VFASWERLLEALEREIEEI---AAKGSSIIPEIDFADIENGGVSEEFLAEIRRRGCV-------------VIRGVVPREE 87 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHCT--SS-EEEHHHHHCT---HHHHHHHHHHSEE-------------EECTSS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHhCCCCCceeeHHHHhCCCCCHHHHHHHHhcCEE-------------EEeCCCCHHH
Confidence 3333334444555555554 556778899999975 221136888999999954 4466777778
Q ss_pred HHHHHHHHHHHHHHHHcCCCC--CCCChhhHHhh
Q psy10208 84 ADKFISDVREELAIIMQNPGL--QLEGVMAMYGK 115 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~~~~~p~~--~~~~~a~~Yg~ 115 (143)
+....+++++ .+++||.- -..+...+|++
T Consensus 88 a~~w~~e~~~---Y~~~n~~~~~~p~~~p~~y~l 118 (416)
T PF07350_consen 88 ALAWKQELKE---YLKANPDFKGFPPDDPQIYEL 118 (416)
T ss_dssp HHHHHHHHHH---HHHHT--TTTSSS---CCE--
T ss_pred HHHHHHHHHH---HHHhCcccCCCCCCCCcEEEe
Confidence 8887777665 56666642 12334555554
No 351
>PTZ00376 aspartate aminotransferase; Provisional
Probab=43.45 E-value=1.9e+02 Score=23.98 Aligned_cols=80 Identities=9% Similarity=0.085 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCCCCHHHHHHHHhhc-CceecCCCCCCeeeEEEEecccChh
Q psy10208 7 TRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDVFHIYRLSSGLNKR-GWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~r-GW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
.+++.+..+.+.+.|++++ ++..+ .|+...+.|-. ++ .+++++|.++ |=.+.. .+ |+++.. ++.+
T Consensus 320 ~~~~~~~r~~l~~~L~~~~~~~~~~~~-~p~gg~f~~~~--~~-~~~~~~L~~~~~v~v~p----~~-Ris~~~--~~~~ 388 (404)
T PTZ00376 320 SGRIQNMRQLLYDELKALGSPGDWEHI-INQIGMFSFTG--LT-KEQVERLIEKYHIYLLD----NG-RISVAG--LTSK 388 (404)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccc-ccCceEEEecC--CC-HHHHHHHHHhCCEeecC----CC-eEEEec--cCHH
Confidence 3456677788888898872 23322 45555666633 23 4678888776 754422 23 999974 3357
Q ss_pred HHHHHHHHHHHHHHH
Q psy10208 83 VADKFISDVREELAI 97 (143)
Q Consensus 83 ~~~~fl~Dl~~ai~~ 97 (143)
.++.|++.|++.+..
T Consensus 389 ~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 389 NVDYVAEAIHDVVRN 403 (404)
T ss_pred hHHHHHHHHHHHHhc
Confidence 899999999987653
No 352
>PRK14421 acylphosphatase; Provisional
Probab=43.35 E-value=59 Score=22.31 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=32.1
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.-| .+.+ +.+.+.- +++.++.|+++|++
T Consensus 22 fv~~~A~~lgL~G~V~N---~~dG~Vei~~~G---~~~~i~~f~~~l~~ 64 (99)
T PRK14421 22 WVARTAEALGLEGWVRN---RRDGSVEALFAG---PADAVAEMIARCRR 64 (99)
T ss_pred HHHHHHHHhCCEEEEEE---CCCCEEEEEEeC---CHHHHHHHHHHHHh
Confidence 57899999999999987 4555 8887763 34678888888753
No 353
>PRK05967 cystathionine beta-lyase; Provisional
Probab=42.99 E-value=2.1e+02 Score=24.32 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecC-C-----CCHHHHHHHHhh--cCc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSD-V-----FHIYRLSSGLNK--RGW 59 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~-~-----~~i~~l~d~L~~--rGW 59 (143)
-++++..++|..|++.|++.|.++-+.-|. -.+++|..+ + .....+.++|+- .|.
T Consensus 261 lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~ 340 (395)
T PRK05967 261 IRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGY 340 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEcc
Confidence 467778889999999999988775443232 368999875 2 224556666653 333
Q ss_pred eecCC-------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 60 NTNSL-------QF-----------PVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 60 ~v~~~-------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.+... .. +.-+|++|- -+..+.+++||..+++.+.
T Consensus 341 slG~~~sLi~~~~~~~~~~~~~~~~~~liRlSvG-----lEd~~dLi~Dl~~Al~~~~ 393 (395)
T PRK05967 341 SWGGYESLALHVKLGDRTVAKAPYAGPVIRLQIG-----LEDVPDLKADLERGFAAAS 393 (395)
T ss_pred CCCCcceeeeeCCCChhHhhhccCCCCeEEEEec-----cCCHHHHHHHHHHHHHhhh
Confidence 22111 01 112455554 3789999999999988653
No 354
>PRK14420 acylphosphatase; Provisional
Probab=42.95 E-value=57 Score=21.68 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=32.5
Q ss_pred CCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHHH
Q psy10208 45 FHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 45 ~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
.-++.+|.++.=.||.-+ .+.+ +.+.+.- +++.++.|++.|++.
T Consensus 19 ~~~~~~A~~~gl~G~V~N---~~dG~Vei~~qG---~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 19 YFVQMEADKRKLTGWVKN---RDDGTVEIEAEG---PEEALQLFLDAIEKG 63 (91)
T ss_pred HHHHHHHHHcCCEEEEEE---CCCCcEEEEEEE---CHHHHHHHHHHHHhC
Confidence 357889999999999766 3555 7887764 247788888888753
No 355
>PRK14431 acylphosphatase; Provisional
Probab=42.90 E-value=46 Score=22.28 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=35.2
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ +-++.+|.+|.=+||.-|. +.++.+.+.- ..+.+++|+..|++
T Consensus 14 GVGFR---~~~~~~A~~~gl~G~V~N~---~dgVei~~qG---~~~~l~~f~~~l~~ 61 (89)
T PRK14431 14 GVGFR---YFTQRIAMNYNIVGTVQNV---DDYVEIYAQG---DDADLERFIQGVIE 61 (89)
T ss_pred CeeEh---HHHHHHHhhcCCEEEEEEC---CCcEEEEEEc---CHHHHHHHHHHHhc
Confidence 46664 3578899999999999885 4467776653 34778888887765
No 356
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=42.69 E-value=19 Score=20.97 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCCCCCChhhHHhhh
Q psy10208 89 SDVREELAIIMQNPGLQLEGVMAMYGKS 116 (143)
Q Consensus 89 ~Dl~~ai~~~~~~p~~~~~~~a~~Yg~~ 116 (143)
+||.+|++.++.+. ......|..||..
T Consensus 3 e~l~~Ai~~v~~g~-~S~r~AA~~ygVp 29 (45)
T PF05225_consen 3 EDLQKAIEAVKNGK-MSIRKAAKKYGVP 29 (45)
T ss_dssp HHHHHHHHHHHTTS-S-HHHHHHHHT--
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCcC
Confidence 58899999999664 3334356688643
No 357
>PRK14429 acylphosphatase; Provisional
Probab=42.46 E-value=63 Score=21.52 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=34.2
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ .-++.+|.++.=+||.-|. +.+ +.+.+.- +++.++.|++.|++
T Consensus 14 GVGFR---~~v~~~A~~~gl~G~V~N~---~dG~Vei~~qG---~~~~i~~f~~~l~~ 62 (90)
T PRK14429 14 GVGCR---RATLTKARALGVTGYVTNC---EDGSVEILAQG---SDPAVDNLIAWCEV 62 (90)
T ss_pred CeeeH---HHHHHHHHHhCCEEEEEEC---CCCeEEEEEEe---CHHHHHHHHHHHhh
Confidence 35664 3578999999999998774 444 7776653 24678888887764
No 358
>PRK14427 acylphosphatase; Provisional
Probab=41.70 E-value=59 Score=21.91 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=31.4
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.-|. +.+ +.+.+.- .++.++.|+++|++
T Consensus 24 fv~~~A~~lgl~G~V~N~---~dGsVei~~qG---~~~~i~~f~~~l~~ 66 (94)
T PRK14427 24 WTMRKAEELGLTGTVRNL---DDGSVALVAEG---TGEQVEKLLDWLNS 66 (94)
T ss_pred HHHHHHHHcCCEEEEEEC---CCCeEEEEEEE---CHHHHHHHHHHHhh
Confidence 577888999999998774 554 8887764 23678888888775
No 359
>COG5418 Predicted secreted protein [Function unknown]
Probab=41.58 E-value=35 Score=25.57 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=51.2
Q ss_pred HHHHHHhh--cCceecCCCCCCeeeEEEEecccC---------hhHHHHHHHHHHHHHHHHHcCC------CCCCCChhh
Q psy10208 49 RLSSGLNK--RGWNTNSLQFPVGIHICITHMHTQ---------PGVADKFISDVREELAIIMQNP------GLQLEGVMA 111 (143)
Q Consensus 49 ~l~d~L~~--rGW~v~~~~~P~~ihi~v~~~h~~---------~~~~~~fl~Dl~~ai~~~~~~p------~~~~~~~a~ 111 (143)
.+-..+-. +||++-.++||...=+-.-+.-.+ +.++...++=+...+.+.+.+. .-+.+.+.-
T Consensus 33 ev~~~l~~npk~~~IiqlPCPE~~yLg~~R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k~d~~kii~IGV~~SpTCg 112 (164)
T COG5418 33 EVRKALPSNPKDWNIIQLPCPEFEYLGWPRPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEKPDGIKIIFIGVKGSPTCG 112 (164)
T ss_pred HHHHhhccCCCCCceEeccCchHHhhCCCCCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhCcCCceEEEEecCCCCccc
Confidence 44455555 499999999998654444443333 3445555555666666666663 134566788
Q ss_pred HHhhhccCCCcchHHHHH
Q psy10208 112 MYGKSHSIPDRSIIGDFT 129 (143)
Q Consensus 112 ~Yg~~~~ipd~~~v~~~~ 129 (143)
+|-.+++=|| ..+++|.
T Consensus 113 Vy~tt~~~~~-~k~~EFf 129 (164)
T COG5418 113 VYTTTSSDPD-GKSKEFF 129 (164)
T ss_pred eEeccCCCCc-hhHHHHH
Confidence 9988888897 5666665
No 360
>PRK14430 acylphosphatase; Provisional
Probab=41.16 E-value=64 Score=21.67 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=34.9
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ +-++.+|.+|.=.||.-|. +.+ +++.+.- .++.++.|++.|++
T Consensus 16 GVGFR---~~~~~~A~~lgl~G~VrN~---~dGsVei~~qG---~~~~i~~f~~~l~~ 64 (92)
T PRK14430 16 GVGYR---AACADAADDLGLGGWVRNR---ADGTVEVMASG---TVRQLEALRAWMEA 64 (92)
T ss_pred ceeeH---HHHHHHHHHhCCEEEEEEC---CCCcEEEEEEc---CHHHHHHHHHHHHh
Confidence 46663 3578899999999998774 554 8887764 34778888887754
No 361
>PLN02672 methionine S-methyltransferase
Probab=41.13 E-value=3.6e+02 Score=26.46 Aligned_cols=86 Identities=10% Similarity=0.145 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-------------------CCCHHHHHHHHhhc-CceecCCC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-------------------VFHIYRLSSGLNKR-GWNTNSLQ 65 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-------------------~~~i~~l~d~L~~r-GW~v~~~~ 65 (143)
..+.+.+..+++.+.|++. |+.+ ..|+.+.+.|-.- ..+-.++++.|.++ |-.+....
T Consensus 971 ~r~~Lk~rRd~L~e~L~~~-Gi~v-~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs 1048 (1082)
T PLN02672 971 QKKILKSRAERLKETLEAC-GWDV-LEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSS 1048 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeE-ecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCc
Confidence 3444667778888999987 7764 3576666666420 24667899988865 98877643
Q ss_pred C---CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 66 F---PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 66 ~---P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
. +..+||++.. ..+.+++.++-|++..+
T Consensus 1049 ~FG~~g~~RIsfa~---~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1049 WTGIPGYCRFSFAL---EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred ccCCCCeEEEEecC---CHHHHHHHHHHHHHHHH
Confidence 2 5568888863 34577777776666443
No 362
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=41.01 E-value=2.2e+02 Score=24.02 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCc------------------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPA------------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~------------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
.+++.-+++..+++.|.+.|++..+.-|. -.+|+|..++ .....+.+.|+- .++.+..
T Consensus 287 R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~ 366 (418)
T TIGR01326 287 RMERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGD 366 (418)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecCCHHHHHHHHHhCCcceeccccCC
Confidence 34555578899999999998887653332 2488988642 224566666653 2222211
Q ss_pred C-------------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 64 L-------------QF-----------PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 64 ~-------------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
. .+ +.-+|++|-- +.++.+++||..|+
T Consensus 367 ~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~Al 417 (418)
T TIGR01326 367 AKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGI-----ENIDDIIADLEQAL 417 (418)
T ss_pred CCceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecC-----CCHHHHHHHHHHhh
Confidence 1 01 1235666653 78999999999886
No 363
>PRK13578 ornithine decarboxylase; Provisional
Probab=40.97 E-value=3e+02 Score=25.61 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHH-hhCCCeeEec---------------------------------------------cCceeE
Q psy10208 4 VNTTRSIIETVKYIEKEL-RSMDGLFIFG---------------------------------------------TPATSV 37 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i-~~i~g~~vlg---------------------------------------------~p~l~v 37 (143)
++..+++++.+..+++.| +.+++|+++. ||. =
T Consensus 418 ~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~--K 495 (720)
T PRK13578 418 RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFVDPC--K 495 (720)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCccccccccccccccccCCc--e
Confidence 445677888999999999 8889999883 221 0
Q ss_pred EEEecCCCC------------HHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 38 IALGSDVFH------------IYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 38 Vaf~~~~~~------------i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+.+...+++ -+.|++.|+++|=.+... .+..+=+.+++.. +.+.++.+++-|.+.-+
T Consensus 496 ltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~-d~~~vL~l~s~g~-t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 496 LLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKC-DLNSILFLLTPAE-DMAKLQQLVAMLARFEK 564 (720)
T ss_pred EEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEec-CCCeEEEEeCCCC-CHHHHHHHHHHHHHHHH
Confidence 112224566 489999999887666532 3444545555444 45778888887666533
No 364
>PRK14448 acylphosphatase; Provisional
Probab=40.37 E-value=73 Score=21.26 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=30.2
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
-++.+|.+|.=.||.-|. |.+ +.+.+.- +.+.++.|++.|+
T Consensus 20 ~v~~~A~~lgl~G~V~N~---~dG~Vei~~~G---~~~~v~~f~~~l~ 61 (90)
T PRK14448 20 FTWQEATKIGIKGYVKNR---PDGSVEVVAVG---SDAQIAAFRDWLQ 61 (90)
T ss_pred HHHHHHHHhCCEEEEEEC---CCCCEEEEEEe---CHHHHHHHHHHHH
Confidence 467889999999998774 444 7777753 2467888888775
No 365
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.15 E-value=64 Score=18.92 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=20.9
Q ss_pred ceeEEEEecCCCCHHHHHHHHhhcCcee
Q psy10208 34 ATSVIALGSDVFHIYRLSSGLNKRGWNT 61 (143)
Q Consensus 34 ~l~vVaf~~~~~~i~~l~d~L~~rGW~v 61 (143)
....+.|+.+. ..++.+.|+++||.+
T Consensus 39 ~~~~v~~~ve~--~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTED--IEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCC--HHHHHHHHHHCCceE
Confidence 45677787765 679999999999975
No 366
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=39.96 E-value=65 Score=21.16 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=29.6
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.-+||.-+ .+.+ +.+.+.- +++.++.|++.|++
T Consensus 22 ~v~~~A~~~gl~G~V~N---~~dg~V~i~~~G---~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 22 FVKRIARKLGLTGWVRN---LPDGSVEIEAEG---EEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHHHHHTT-EEEEEE----TTSEEEEEEEE---EHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCceEEEE---CCCCEEEEEEEe---CHHHHHHHHHHHHh
Confidence 46788899999999666 3444 7776653 35788999888776
No 367
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=39.72 E-value=90 Score=24.85 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=33.1
Q ss_pred CHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
-+|++-..|.+|||.-.....|.--+- |-| +++++++-+++++...++.
T Consensus 46 kvY~vl~sLe~kG~v~~~~g~P~~y~a-v~p----~~~i~~~~~~~~~~~~~~~ 94 (247)
T COG1378 46 KVYDVLRSLEKKGLVEVIEGRPKKYRA-VPP----EELIERIKEELQELLRELE 94 (247)
T ss_pred hHHHHHHHHHHCCCEEeeCCCCceEEe-CCH----HHHHHHHHHHHHHHHHHHH
Confidence 489999999999999888777763332 322 2466666666666554444
No 368
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=39.56 E-value=48 Score=25.97 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=27.1
Q ss_pred CCCeeeEEEEeccc-ChhHHHHHHHHHHHHHHH
Q psy10208 66 FPVGIHICITHMHT-QPGVADKFISDVREELAI 97 (143)
Q Consensus 66 ~P~~ihi~v~~~h~-~~~~~~~fl~Dl~~ai~~ 97 (143)
.|..+||+++++.. +....+.|++.|++++..
T Consensus 86 ~~~~lHISLSr~~~lr~~~id~f~~~lr~~l~~ 118 (239)
T PF09749_consen 86 SPDPLHISLSRTFPLRTHQIDPFVDSLRQALRS 118 (239)
T ss_pred CCCCeEEEeCCCccccHHHHHHHHHHHHHHHhh
Confidence 46679999998776 568999999999999954
No 369
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=39.30 E-value=62 Score=24.77 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhCCCeeEeccC--ceeEEEEecCCCCHHHHHHHHhhcCc-eecCCCCCCeeeEEEEecccChhHHHHH
Q psy10208 11 IETVKYIEKELRSMDGLFIFGTP--ATSVIALGSDVFHIYRLSSGLNKRGW-NTNSLQFPVGIHICITHMHTQPGVADKF 87 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vlg~p--~l~vVaf~~~~~~i~~l~d~L~~rGW-~v~~~~~P~~ihi~v~~~h~~~~~~~~f 87 (143)
+.+-++|.+.|++..+-++..+. .-|||..+.++ .+.++...|+++|. |+|.... ...|. ..+....++..
T Consensus 47 lSt~k~Il~aL~e~e~~~ita~~iM~spvv~v~pdD-si~~vv~lM~~~g~SQlPVi~~----~k~VG-sItE~~iv~~~ 120 (187)
T COG3620 47 LSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDD-SISDVVNLMRDKGISQLPVIEE----DKVVG-SITENDIVRAL 120 (187)
T ss_pred HHHHHHHHHHHHHhhcceEeHhhhccCCeeEECchh-hHHHHHHHHHHcCCccCceeeC----Ceeee-eecHHHHHHHH
Confidence 34567788888888887776664 34777666543 68899999999997 4443322 23343 23345677777
Q ss_pred HHHH
Q psy10208 88 ISDV 91 (143)
Q Consensus 88 l~Dl 91 (143)
+++.
T Consensus 121 le~~ 124 (187)
T COG3620 121 LEGM 124 (187)
T ss_pred hccc
Confidence 7765
No 370
>PLN02656 tyrosine transaminase
Probab=39.28 E-value=2.3e+02 Score=23.63 Aligned_cols=88 Identities=6% Similarity=0.000 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-C-----CC-CHHH-HHHHHhhcCceecCCC---CCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-D-----VF-HIYR-LSSGLNKRGWNTNSLQ---FPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~-----~~-~i~~-l~d~L~~rGW~v~~~~---~P~~ihi~v 74 (143)
..+.+-+..+.+.+.|++++++.....|+-..+.|-. + .+ +-.+ +...|.+.|=.+.... .+..+||++
T Consensus 304 ~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~ 383 (409)
T PLN02656 304 TINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITF 383 (409)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEe
Confidence 3344445566788888888665444457655555532 1 11 2323 4466677887665542 356789998
Q ss_pred EecccChhHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. ..+.+++=++-|++++.
T Consensus 384 ~~---~~e~l~eal~rl~~~~~ 402 (409)
T PLN02656 384 AA---DPSSLEEALGRIKSFYL 402 (409)
T ss_pred CC---CHHHHHHHHHHHHHHHH
Confidence 84 24555555566665544
No 371
>PRK14424 acylphosphatase; Provisional
Probab=39.00 E-value=79 Score=21.39 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=31.2
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
-++.+|.+|.-+||.-|. |.+ +.+.+.- +.+-++.|++.|+
T Consensus 25 ~v~~~A~~~gl~G~V~N~---~dG~Vei~~qG---~~~~v~~f~~~l~ 66 (94)
T PRK14424 25 ATVREAHALGLRGWVANL---EDGTVEAMIQG---PAAQIDRMLAWLR 66 (94)
T ss_pred HHHHHHHHcCCeEEEEEC---CCCCEEEEEEE---CHHHHHHHHHHHH
Confidence 477899999999998764 454 8887764 2467888888885
No 372
>smart00073 HPT Histidine Phosphotransfer domain. Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.
Probab=38.85 E-value=39 Score=21.34 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCC
Q psy10208 82 GVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~~~~p 102 (143)
+.++.|++++...+..+....
T Consensus 2 e~~~~f~~~~~~~l~~l~~~~ 22 (87)
T smart00073 2 EELAEFLQSLEEGLLELEKAL 22 (87)
T ss_pred hHHHHHHHHHHHHHHHHHhCc
Confidence 578899999999998887765
No 373
>PRK14426 acylphosphatase; Provisional
Probab=38.76 E-value=65 Score=21.55 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=30.0
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.-|. +.+ +.+.+.- ..+.++.|++.|++
T Consensus 22 ~v~~~A~~~gl~G~V~N~---~dG~Vei~~~G---~~~~i~~f~~~l~~ 64 (92)
T PRK14426 22 HTQHEALKLGLTGYAKNL---DDGSVEVVACG---EEEQVEKLMEWLKE 64 (92)
T ss_pred HHHHHHHHhCCEEEEEEC---CCCcEEEEEEe---CHHHHHHHHHHHhc
Confidence 467888999999998764 443 7777754 24678888877753
No 374
>PRK08354 putative aminotransferase; Provisional
Probab=38.15 E-value=2e+02 Score=22.80 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=35.6
Q ss_pred cCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChhHHHHHHHHHHH
Q psy10208 32 TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 32 ~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
.|+.+.+.+... +-.++++.|.++|..+.... .|..+||++... +..+.|++=|++
T Consensus 250 ~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~~----~~~~~l~~al~~ 308 (311)
T PRK08354 250 KSDANFFIKDVG--DAEKFVEFLKRNGILVRDCTSFGLPGYIRFSVRDR----EENEKLIRALRE 308 (311)
T ss_pred CCCCcEEEEECC--CHHHHHHHHHHCCeEEEecccCCCCCeEEEEeCCH----HHHHHHHHHHHH
Confidence 455555555432 45688999999998876654 256788888742 345555554443
No 375
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=38.11 E-value=52 Score=29.79 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC----CCH-HHHHHHHhhcCceecC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV----FHI-YRLSSGLNKRGWNTNS 63 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~----~~i-~~l~d~L~~rGW~v~~ 63 (143)
..+.+++.|....+-++++ ||.=+ ||+.++.+ +.. -.+++++.++||..|-
T Consensus 181 tpegmVeSAle~~~i~e~~-~f~di------viS~KsSnv~~mi~AyrlLa~~~d~eg~~YPL 236 (606)
T PRK00694 181 TIEGMVYSALEYIEVCEKL-DYRDV------VFSMKSSNPKVMVAAYRQLAKDLDARGWLYPL 236 (606)
T ss_pred CHHHHHHHHHHHHHHHHHC-CCCcE------EEEEEcCCHHHHHHHHHHHHHHhhccCCCcCc
Confidence 4466788888888888888 55432 77887653 222 3567888899998664
No 376
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=38.01 E-value=44 Score=25.66 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.8
Q ss_pred CHHHHHHHHhhcCceecC
Q psy10208 46 HIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~ 63 (143)
|...|-++|++|||.-..
T Consensus 92 ~p~~L~~RLk~RGy~~eK 109 (180)
T COG1936 92 DPEVLYERLKGRGYSEEK 109 (180)
T ss_pred CHHHHHHHHHHcCCCHHH
Confidence 567899999999996544
No 377
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=38.00 E-value=1.2e+02 Score=24.15 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=37.2
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCC------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQF------PVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
+=-+|+.--..-.+.+++++||-.++..+. -.|+||++. |+.|+-.+++-+++..
T Consensus 52 ie~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~-----------F~~DI~~v~~~l~~~~ 112 (231)
T COG2357 52 IEHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQ-----------FVDDIYRVVDLLKSRK 112 (231)
T ss_pred hHHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeee-----------hHhhHHHHHHHHhccc
Confidence 433466555677999999999987766542 456776554 4567777777777654
No 378
>PRK14422 acylphosphatase; Provisional
Probab=38.00 E-value=72 Score=21.45 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=31.1
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.++.=+||.=|. +.+ +.+.+.- +++.++.|+++|++
T Consensus 24 ~v~~~A~~~gl~G~V~N~---~dG~Vei~~~G---~~~~i~~f~~~l~~ 66 (93)
T PRK14422 24 WTRSRALELGLTGYAANL---ADGRVQVVAEG---PRAACEKLLQLLRG 66 (93)
T ss_pred HHHHHHHHcCCEEEEEEC---CCCCEEEEEEc---CHHHHHHHHHHHHh
Confidence 467888999999998664 555 7877753 34678888888775
No 379
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.67 E-value=2.6e+02 Score=23.80 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc------------------eeEEEEecCC--CCHHHHHHHHhh--cCcee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA------------------TSVIALGSDV--FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~------------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v 61 (143)
..++++-.++|+++++.|++.|+++-+.-|. -.+++|..++ -....+.+.|+- .|+.+
T Consensus 292 ~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l~~~~~s~ 371 (427)
T PRK05994 292 PLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANI 371 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCcceecccc
Confidence 3466777889999999999999887553332 3489998752 224455666653 23222
Q ss_pred cCC-------------CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 62 NSL-------------QFP-----------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 62 ~~~-------------~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
... .+| .-+|++|- -|..+.+++||..|++.
T Consensus 372 G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-----lE~~~dli~dl~~Al~~ 426 (427)
T PRK05994 372 GDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIG-----IEDVDDIIADLEQALAK 426 (427)
T ss_pred CCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEec-----cCCHHHHHHHHHHHHhh
Confidence 111 011 12455554 37899999999999863
No 380
>PRK14438 acylphosphatase; Provisional
Probab=37.19 E-value=79 Score=21.10 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=31.4
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.-|. +.+ +.+.+.- +++.++.|+++|++
T Consensus 21 ~~~~~A~~~gl~G~V~N~---~dG~Vei~~qG---~~~~i~~f~~~l~~ 63 (91)
T PRK14438 21 HTQQTAQRLNVSGWVKNL---PNGSVQGCFEG---EETDVAALIDWCHH 63 (91)
T ss_pred HHHHHHHHcCCEEEEEEC---CCCEEEEEEEE---CHHHHHHHHHHHhh
Confidence 467889999999998774 554 7777763 34678888888863
No 381
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=37.16 E-value=56 Score=19.25 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=20.5
Q ss_pred HHHHHHhhcCceecCC-------CCCCeeeEEEEecc----cChhHHHHHHH
Q psy10208 49 RLSSGLNKRGWNTNSL-------QFPVGIHICITHMH----TQPGVADKFIS 89 (143)
Q Consensus 49 ~l~d~L~~rGW~v~~~-------~~P~~ihi~v~~~h----~~~~~~~~fl~ 89 (143)
++...|++.||.+... ..|..-.+++-+.| +....+.++++
T Consensus 3 el~k~L~~~G~~~~r~~GSH~~~~~~~~~~~~~vp~h~~~ei~~~~~k~ilk 54 (56)
T PF07927_consen 3 ELIKLLEKAGFEEVRQKGSHHIFRHPGGRKIVTVPPHPGKEIKPGTVKQILK 54 (56)
T ss_dssp HHHHHHHHTT-EEEEEETTEEEEE-TTS-E-EEEE-SSS-S--HHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCCCCEEEEEeCCCCcceEeCCCCccccCHHHHHHHHH
Confidence 6778889999988753 23544442333556 23445555544
No 382
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=37.15 E-value=1.5e+02 Score=21.12 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhc-CceecCC----C------CCCeeeEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKR-GWNTNSL----Q------FPVGIHICI 74 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~----~------~P~~ihi~v 74 (143)
.+.|.++++.|.++|-+--++. ..++--|-|+.. ++|---=+...|+. ||.--+. + .|.+||+.+
T Consensus 15 ~e~I~~at~eLl~~ii~~N~l~---~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vplmc~qEm~V~gsL~rcIRvli 91 (117)
T TIGR01796 15 AEEIGEAVAELLTELMERNELT---PEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPVMCAQEIPVEGSLPRCIRVLI 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC---HHHEEEEEEEecCcccccChHHHHHhccCCCCcceeccCcCCCCCCCCceeEEEE
Confidence 5678888888887775544554 123334457653 45543336777887 9954332 2 255677655
Q ss_pred E
Q psy10208 75 T 75 (143)
Q Consensus 75 ~ 75 (143)
.
T Consensus 92 ~ 92 (117)
T TIGR01796 92 H 92 (117)
T ss_pred E
Confidence 3
No 383
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=36.99 E-value=2e+02 Score=25.60 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCC------CCCCe-e--------eEEEEec
Q psy10208 15 KYIEKELRSMDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSL------QFPVG-I--------HICITHM 77 (143)
Q Consensus 15 ~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~------~~P~~-i--------hi~v~~~ 77 (143)
+.+.+.-++.+-++..+. .+.-+|+|.+..-.+.+..+.|+++|-.+... ++|.. + ++.|.-
T Consensus 444 ~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE- 522 (562)
T TIGR03710 444 RKLETIAKEIPEPEVYGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVE- 522 (562)
T ss_pred HHHHHHHhhCCCceeecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEc-
Confidence 344443344555666664 56889999988777889999999999766542 45542 2 233322
Q ss_pred ccChhHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREEL 95 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai 95 (143)
+...-+|..+++.++
T Consensus 523 ---~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 523 ---QNATGQLAKLLRAET 537 (562)
T ss_pred ---cChhhhHHHHHHHHh
Confidence 222357777777776
No 384
>KOG1838|consensus
Probab=36.61 E-value=13 Score=32.02 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=39.7
Q ss_pred ceeEEEEe------cCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc-CCCC
Q psy10208 34 ATSVIALG------SDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ-NPGL 104 (143)
Q Consensus 34 ~l~vVaf~------~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~-~p~~ 104 (143)
..|+|.|- |.+-.+-.++....++||++........-..-++-+.+ ---..-+||+++++.+++ .|..
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~---f~ag~t~Dl~~~v~~i~~~~P~a 198 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRL---FTAGWTEDLREVVNHIKKRYPQA 198 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCce---eecCCHHHHHHHHHHHHHhCCCC
Confidence 34666653 33455678999999999988665432211122221111 111124799999999997 5653
No 385
>PRK14434 acylphosphatase; Provisional
Probab=36.53 E-value=70 Score=21.50 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=34.8
Q ss_pred EEEEecCCCCHHHHHHHHh-hcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLN-KRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~-~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ .-++.+|.+|. =.||.-|. +.+ +.+.+.-.. .+.++.|++.|++
T Consensus 14 GVGFR---~fv~~~A~~lg~l~G~V~N~---~dGsVei~~qG~~--~~~l~~f~~~l~~ 64 (92)
T PRK14434 14 GVGFR---YSVYSLALEIGDIYGRVWNN---DDGTVEILAQSDD--SAKLAKFIQEIRK 64 (92)
T ss_pred ceeEh---HHHHHHHHHcCCcEEEEEEC---CCCCEEEEEEcCC--HHHHHHHHHHHhc
Confidence 46674 35789999999 89998874 555 777775311 1478888888765
No 386
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=36.29 E-value=75 Score=19.16 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=21.5
Q ss_pred cccChhHHHHHHHHHHHHHHHH-HcCC
Q psy10208 77 MHTQPGVADKFISDVREELAII-MQNP 102 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~-~~~p 102 (143)
.+++.+..++|++.+++....+ ++.|
T Consensus 8 ~~v~~~~~~~f~~~~~~~~~~~~~~~~ 34 (78)
T PF03992_consen 8 FKVKPGKEEEFLAAFQELAEATLRKEP 34 (78)
T ss_dssp EEEETTGHHHHHHHHHHHHHHHHHTST
T ss_pred EEeCcchHHHHHHHHHHHHHHHHhcCC
Confidence 4556788999999999999988 6766
No 387
>PRK09894 diguanylate cyclase; Provisional
Probab=36.17 E-value=2e+02 Score=22.21 Aligned_cols=100 Identities=7% Similarity=0.054 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhh----cCceecCCCCCCeeeEEEEec
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNK----RGWNTNSLQFPVGIHICITHM 77 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~----rGW~v~~~~~P~~ihi~v~~~ 77 (143)
||..--+-+...++.|.+.++.-+-+--+|..++-++.-..+..+...+++++++ ..+.+.....+..+.+-+...
T Consensus 177 G~~~gd~~L~~ia~~l~~~~~~~~~~~R~~g~~F~ill~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~siGv~~~ 256 (296)
T PRK09894 177 GHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIICLKAATDEEACRAGERIRQLIANHAITHSDGRINITATFGVSRA 256 (296)
T ss_pred CcHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCeEEEEeCCCCHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEEEEEEc
Confidence 4444444455677777777766543444566666444322222344555666543 455555443332333333322
Q ss_pred ccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 78 HTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
. ....++.++.....++...++.+
T Consensus 257 ~-~~~~~~~ll~~A~~Al~~ak~~g 280 (296)
T PRK09894 257 F-PEETLDVVIGRADRAMYEGKQTG 280 (296)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 12457788888888887777654
No 388
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=35.95 E-value=2.4e+02 Score=23.06 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-ee-----EEEEecCC---CCHHHHHHHHhhcCceecCCC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-TS-----VIALGSDV---FHIYRLSSGLNKRGWNTNSLQ 65 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-l~-----vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~ 65 (143)
+..++=.++++++.+.|++++++..+..|. .. .+.+..++ .+-.++.+.|+++|......-
T Consensus 241 ~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~ 310 (363)
T PF01041_consen 241 EIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRPHY 310 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCST
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccccc
Confidence 344445678899999999999998876432 11 12233332 467899999999998776543
No 389
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=35.68 E-value=2.5e+02 Score=23.07 Aligned_cols=80 Identities=9% Similarity=-0.048 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHH-hhcCceecCCC-----------CCCeeeEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGL-NKRGWNTNSLQ-----------FPVGIHICI 74 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L-~~rGW~v~~~~-----------~P~~ihi~v 74 (143)
.+...+..+.+.+.|++. +.+ ..|.-..+.|-.-+.+..++++.| ++.|..+.... .+..+||++
T Consensus 299 ~~~~~~~~~~~~~~L~~~--~~~-~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~ 375 (393)
T TIGR03538 299 RALYREKFAAVLEILGQV--LDL-ELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIAL 375 (393)
T ss_pred HHHHHHHHHHHHHHHHhh--Ccc-cCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEe
Confidence 334455555666777664 222 245444444433224567788887 46898874332 134678887
Q ss_pred EecccChhHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVR 92 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~ 92 (143)
.. ..+..++.++-|+
T Consensus 376 ~~---~~~~l~~~l~~l~ 390 (393)
T TIGR03538 376 VA---PLEECVEAAERIR 390 (393)
T ss_pred cC---CHHHHHHHHHHHH
Confidence 63 2345555554444
No 390
>PRK14446 acylphosphatase; Provisional
Probab=35.67 E-value=49 Score=22.16 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=34.8
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ .-++.+|.+|.=.||.-|. |.+ +++.+.- +++.++.|++.|++
T Consensus 14 GVGFR---~fv~~~A~~lgl~G~V~N~---~dGsVei~~qG---~~~~l~~f~~~l~~ 62 (88)
T PRK14446 14 GVWYR---ASTRERAVALGLVGHARNQ---ADGSVEVVAAG---SAAALEALEAWLWQ 62 (88)
T ss_pred CeeEh---HHHHHHHeeCCeEEEEEEC---CCCCEEEEEEe---CHHHHHHHHHHHhh
Confidence 35663 3578999999999998884 555 8887753 34678888887763
No 391
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=35.56 E-value=22 Score=25.46 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.2
Q ss_pred cCCCcchHHHHHHHHHHhhcCC
Q psy10208 118 SIPDRSIIGDFTRYYIDATYYT 139 (143)
Q Consensus 118 ~ipd~~~v~~~~~~~~d~~y~~ 139 (143)
+-|+.+.+-+++.+|||.+|.+
T Consensus 65 KYp~~~~l~~~ideYLDeTy~L 86 (122)
T PF10757_consen 65 KYPDESDLIELIDEYLDETYML 86 (122)
T ss_pred ccCcHhhHHHHHHHHHHHHHHH
Confidence 4578889999999999999876
No 392
>PRK14423 acylphosphatase; Provisional
Probab=34.96 E-value=92 Score=20.81 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=34.0
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ .-++.+|.+|.=.||.-|. +.+ +.+.+.- +++.++.|++.|++
T Consensus 17 GVGFR---~~v~~~A~~lgl~G~V~N~---~dG~Vei~~~G---~~~~i~~f~~~l~~ 65 (92)
T PRK14423 17 GVYYR---ASTRDTARELGVDGWVRNL---DDGRVEAVFEG---PRDAVEAMVEWCHE 65 (92)
T ss_pred Ceeeh---HHHHHHHHHcCCEEEEEEC---CCCeEEEEEEE---CHHHHHHHHHHHHh
Confidence 35553 3578899999999998774 454 7777753 34678888887763
No 393
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=34.88 E-value=2.6e+02 Score=23.69 Aligned_cols=59 Identities=8% Similarity=0.096 Sum_probs=37.0
Q ss_pred eEEEEecCCCCHHHHHHHHhhcCceecCCCCCCee-eEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 36 SVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGI-HICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 36 ~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~i-hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
|++.+. +-|+...++.+-.-.+.- ..|...+. ++.| | +++.++|++.|.+.++.+...+
T Consensus 212 ~~iV~~--dadl~~aa~~i~~~~~~~-~GQ~C~a~~rv~V---~--~~i~d~f~~~L~~~~~~l~~~~ 271 (426)
T cd07087 212 PCIVDK--DANLEVAARRIAWGKFLN-AGQTCIAPDYVLV---H--ESIKDELIEELKKAIKEFYGED 271 (426)
T ss_pred ceEecC--CCCHHHHHHHHHHHHHhc-cCCccccCCEEEE---c--HHHHHHHHHHHHHHHHHHcCCC
Confidence 455453 346667777776555543 44433333 4444 2 4688999999999999986543
No 394
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=34.78 E-value=2.4e+02 Score=24.08 Aligned_cols=106 Identities=12% Similarity=0.183 Sum_probs=63.1
Q ss_pred CeeEec--cCceeEEEEecCCCCHHHHHHHHhhcCceecCC------CCCCe-e--------eEEEEecccChhHHHHHH
Q psy10208 26 GLFIFG--TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL------QFPVG-I--------HICITHMHTQPGVADKFI 88 (143)
Q Consensus 26 g~~vlg--~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~------~~P~~-i--------hi~v~~~h~~~~~~~~fl 88 (143)
-++..+ +.++-+|++.+..-...+..+.|+++|..+... ++|.. + ++.|.--+...+-.-.++
T Consensus 259 ~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~ 338 (407)
T PRK09622 259 LVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALF 338 (407)
T ss_pred ceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHH
Confidence 355554 357889999886556778889999999866543 34432 1 344443333233356778
Q ss_pred HHHHHHHHHHHc--CCCCCCCChhhHHhhhccCCCcchHHHHHHHHHHh
Q psy10208 89 SDVREELAIIMQ--NPGLQLEGVMAMYGKSHSIPDRSIIGDFTRYYIDA 135 (143)
Q Consensus 89 ~Dl~~ai~~~~~--~p~~~~~~~a~~Yg~~~~ipd~~~v~~~~~~~~d~ 135 (143)
.|+..++..... .|.. ..-+||..+..+..+-+.+++......
T Consensus 339 ~ev~~al~~~~~~~~~~v----~~~~~g~gG~~~t~~~i~~~~~~l~~~ 383 (407)
T PRK09622 339 NEVTSAVYQTQGTKHPVV----SNYIYGLGGRDMTIAHLCEIFEELNEN 383 (407)
T ss_pred HHHHHHHhccCcCCCceE----eeeEECCCCCCCCHHHHHHHHHHHHhh
Confidence 888888754322 1210 124688877677665555566555543
No 395
>PRK14435 acylphosphatase; Provisional
Probab=34.66 E-value=1e+02 Score=20.55 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=31.3
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.-|. |.+ +.+.+.- +++.+++|++.|++
T Consensus 20 ~v~~~A~~~gl~G~V~N~---~dG~Vei~~~G---~~~~i~~f~~~l~~ 62 (90)
T PRK14435 20 FTRRVAKSLGVKGYVMNM---DDGSVFIHAEG---DENALRRFLNEVAK 62 (90)
T ss_pred HHHHHHHHhCCEEEEEEC---CCCCEEEEEEE---CHHHHHHHHHHHhh
Confidence 477889999999998774 444 8887763 34678888888853
No 396
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=34.04 E-value=1e+02 Score=24.88 Aligned_cols=88 Identities=22% Similarity=0.358 Sum_probs=55.4
Q ss_pred hCCCeeEeccCc-eeEEEEec-------CCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHH
Q psy10208 23 SMDGLFIFGTPA-TSVIALGS-------DVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 23 ~i~g~~vlg~p~-l~vVaf~~-------~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
++.|--++..|. .-||=|-. +.+.+..+-+.|.++|+.|-+.+... +--|. ..+++.++..+.+
T Consensus 4 ~i~~~wvl~P~~P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~------tfDH~--~~A~~~~~~f~~~ 75 (250)
T PF07082_consen 4 EISGSWVLIPPRPKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV------TFDHQ--AIAREVWERFERC 75 (250)
T ss_pred cccCcEEEeCCCCCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC------CCcHH--HHHHHHHHHHHHH
Confidence 344555555432 34555532 34667788999999999998877643 23354 6778888888888
Q ss_pred HHHHHcCCCCCCCChhhHHhhhccC
Q psy10208 95 LAIIMQNPGLQLEGVMAMYGKSHSI 119 (143)
Q Consensus 95 i~~~~~~p~~~~~~~a~~Yg~~~~i 119 (143)
.+.+....... ....++||+.+|+
T Consensus 76 ~~~L~~~~~~~-~~~lP~~~vGHSl 99 (250)
T PF07082_consen 76 LRALQKRGGLD-PAYLPVYGVGHSL 99 (250)
T ss_pred HHHHHHhcCCC-cccCCeeeeeccc
Confidence 88887643221 1124567776665
No 397
>PRK14441 acylphosphatase; Provisional
Probab=34.02 E-value=83 Score=21.12 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=31.2
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
-++.+|.+|.=.||.-|. |.+ +++.+.- .++.++.|++.|+
T Consensus 23 ~v~~~A~~lgL~G~V~N~---~dG~Vei~~qG---~~~~i~~f~~~l~ 64 (93)
T PRK14441 23 SAADEARRLGVEGWVRNL---PDGRVEAEAEG---ERAAVGALVRWCH 64 (93)
T ss_pred HHHHHHhhcCcEEEEEEC---CCCEEEEEEEE---CHHHHHHHHHHHh
Confidence 578889999999998763 555 8887764 3467888888875
No 398
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=33.75 E-value=1.3e+02 Score=25.40 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=34.7
Q ss_pred HHHHHHHhhCCCeeEec--cCceeEEEEecCCCCHHHHHHHHhhcCceecCC
Q psy10208 15 KYIEKELRSMDGLFIFG--TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL 64 (143)
Q Consensus 15 ~~l~~~i~~i~g~~vlg--~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~ 64 (143)
+.+.+..++.+.++..+ +.++-+|++.+..-...+..+.|+++|..+...
T Consensus 254 ~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l 305 (376)
T PRK08659 254 RKIEKNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLF 305 (376)
T ss_pred HHHHHHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceEEE
Confidence 34444333445566665 357889999887667788899999999876553
No 399
>PRK09148 aminotransferase; Validated
Probab=33.67 E-value=2.8e+02 Score=23.04 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC----CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD----VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~----~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v 74 (143)
..+.+.+..+.+.+.|++. |+.+. .|+-..+.|- .+ ..+..++++.|- +.|..+.... .+..+||++
T Consensus 293 ~~~~~~~~r~~l~~~L~~~-~~~~~-~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~ 370 (405)
T PRK09148 293 MRELYKKRRDVLVESFGRA-GWDIP-PPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL 370 (405)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCccC-CCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe
Confidence 3445666777788889886 66533 4555555543 22 134567888764 6898776532 135688888
Q ss_pred EecccChhHHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.. ..+.+.+-++-|++.++...
T Consensus 371 ~~---~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 371 VE---NEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred cC---CHHHHHHHHHHHHHHHHHHH
Confidence 52 23555666666666555443
No 400
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=33.65 E-value=61 Score=28.48 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=43.2
Q ss_pred CCHHHHHHHHhhcCceec------CCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc-------------CCCCC
Q psy10208 45 FHIYRLSSGLNKRGWNTN------SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ-------------NPGLQ 105 (143)
Q Consensus 45 ~~i~~l~d~L~~rGW~v~------~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~-------------~p~~~ 105 (143)
..+.++++.|+++|=.|. +-++|....+..-..++ -=.-+.++.|+-+++.+ ||.+.
T Consensus 324 h~v~el~~~L~~~Gv~V~faIHPVAGRMPGHMNVLLAEA~V----PYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~ 399 (462)
T PRK09444 324 YPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKV----PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQ 399 (462)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccccccCCCcceeEEeecCC----CHHHHHhHHhhccccccCCEEEEecCccCCCcccc
Confidence 467899999999998774 34567655554444444 33345566666555543 24444
Q ss_pred CCChhhHHhhh
Q psy10208 106 LEGVMAMYGKS 116 (143)
Q Consensus 106 ~~~~a~~Yg~~ 116 (143)
.+...++|||-
T Consensus 400 ~dp~SpIyGMP 410 (462)
T PRK09444 400 EDPNSPIAGMP 410 (462)
T ss_pred cCCCCCcCCCc
Confidence 45578899984
No 401
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=33.20 E-value=3.2e+02 Score=23.67 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCceecCCCCCCeeeEEEEeccc-ChhHHHHHHHHHHHHHHHHH
Q psy10208 48 YRLSSGLNKRGWNTNSLQFPVGIHICITHMHT-QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 48 ~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~-~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..+.+++.++|=.+... +-+|.++|+.+ +++.++++++-|+++++++.
T Consensus 421 ~~~~~~~~~~Gll~~~~----g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 421 LHAYRAALARGVVLRPL----GDVLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred HHHHHHHHHCCeEEEec----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35677888899666432 23566777655 68999999999999998764
No 402
>PRK14437 acylphosphatase; Provisional
Probab=33.04 E-value=1.1e+02 Score=21.36 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 45 FHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 45 ~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
.-++.+|.+|.=+||.-+. +.+ +.+.+.- +.+.++.|++.|++
T Consensus 40 ~fv~~~A~~lgL~G~V~N~---~dG~Vei~~qG---~~~~ie~f~~~L~~ 83 (109)
T PRK14437 40 ESVRKKAEELQLTGWVKNL---SHGDVELVACG---ERDSIMILTEWLWE 83 (109)
T ss_pred HHHHHHHHHhCCeEEEEEC---CCCCEEEEEEE---CHHHHHHHHHHHHh
Confidence 3578999999999998774 444 7777753 34678888888863
No 403
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=32.89 E-value=1e+02 Score=25.06 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCeeEeccC----ceeE----------EE-EecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEe
Q psy10208 14 VKYIEKELRSMDGLFIFGTP----ATSV----------IA-LGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITH 76 (143)
Q Consensus 14 a~~l~~~i~~i~g~~vlg~p----~l~v----------Va-f~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~ 76 (143)
+.|+.++|++ |+-.+.+| +++= +. ||-+...+..--+.|.++|..+- .|+++|+
T Consensus 15 ~~Wf~nRl~~--G~v~vrNPfn~~qvsrv~l~p~~Vd~iVFWTKnp~P~l~~L~~l~~~gy~~y-------fq~Tit~ 83 (266)
T PF08902_consen 15 SDWFMNRLRE--GYVLVRNPFNPHQVSRVSLSPEDVDCIVFWTKNPAPFLPYLDELDERGYPYY-------FQFTITG 83 (266)
T ss_pred HHHHHHHhhC--CEEEeECCCCCCceEEEEcChhcceEEEEecCCcHHHHhhHHHHHhCCCceE-------EEEEeCC
Confidence 5788899986 66655554 2222 33 33334445566677788887655 6677765
No 404
>PRK14445 acylphosphatase; Provisional
Probab=32.80 E-value=88 Score=20.83 Aligned_cols=42 Identities=33% Similarity=0.541 Sum_probs=31.0
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.-|. +.+ +++.+.- +++.++.|++.|++
T Consensus 22 ~v~~~A~~~gl~G~V~N~---~dG~Vei~~qG---~~~~l~~f~~~l~~ 64 (91)
T PRK14445 22 FIDRAASELNLSGWVRNL---PDGTVEIEAQG---SSGMIDELIKQAER 64 (91)
T ss_pred HHHHHHhhCCCEEEEEEC---CCCeEEEEEEE---CHHHHHHHHHHHHh
Confidence 477888999889998774 454 7887764 34678888888763
No 405
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=32.78 E-value=2.8e+02 Score=23.32 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCceecCCCCCCee---eEEEEecccChhHHHHHHHHHHHHHHHHHcCCC---------------CCCCC
Q psy10208 47 IYRLSSGLNKRGWNTNSLQFPVGI---HICITHMHTQPGVADKFISDVREELAIIMQNPG---------------LQLEG 108 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~~P~~i---hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~---------------~~~~~ 108 (143)
+-.++..|.+-|-..+.++..-.+ |++|... -++++++.=+.||.-=...+....- .++++
T Consensus 111 l~~~~~eL~evGe~a~~~~~Rl~~HPdQf~vl~S-~~~eV~~ssir~layH~r~l~~mgl~~Rs~~~lhlgg~~gGK~~~ 189 (347)
T COG4294 111 LEFIQSELEEVGELANKHNHRLTMHPDQFTVLNS-PREEVVDSSIRDLAYHYRILDGMGLAERSVWNLHLGGTHGGKKER 189 (347)
T ss_pred HHHHHHHHHHHHHHHHhhCceeeecCCceEEecC-CchHHHHHHHHHHHHHHHHHhhcCCCcCCceEEEeccccCCchhH
Confidence 346788889989888888753333 3555432 2478999999999887777765431 23444
Q ss_pred hhhHHhhhccCCCcchHHH
Q psy10208 109 VMAMYGKSHSIPDRSIIGD 127 (143)
Q Consensus 109 ~a~~Yg~~~~ipd~~~v~~ 127 (143)
.+.+--..+++|| +|-..
T Consensus 190 ~eqf~kni~~LP~-~vksR 207 (347)
T COG4294 190 LEQFIKNIQRLPD-SVKSR 207 (347)
T ss_pred HHHHHHHHhhcCH-HHHHh
Confidence 5667777788885 44443
No 406
>PRK05942 aspartate aminotransferase; Provisional
Probab=32.58 E-value=2.8e+02 Score=22.78 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-CCCHHHHHHH-HhhcCceecCCC-----CCCeeeEEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-VFHIYRLSSG-LNKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-~~~i~~l~d~-L~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
..+...+..+.+.+.+++. |+.+. .|+.+.+.| +.+ .++-.++..+ |.++|..+.... .+..+|+++.
T Consensus 298 ~~~~~~~~~~~~~~~L~~~-~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~ 373 (394)
T PRK05942 298 VQERYRTRRDFLIQGLGEL-GWNIP-PTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI 373 (394)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeec-CCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec
Confidence 3444555567788888887 77654 466665554 333 4566677765 567898875432 2457888885
No 407
>PRK14442 acylphosphatase; Provisional
Probab=32.54 E-value=99 Score=20.64 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=31.4
Q ss_pred CCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHH
Q psy10208 45 FHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 45 ~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
..++.+|.+|.=.||.-|. +.+ +.+.+.- +++.++.|++.|+
T Consensus 21 ~~~~~~A~~~gl~G~V~N~---~dG~Vei~~qG---~~~~i~~f~~~l~ 63 (91)
T PRK14442 21 QATREEADRLELDGWVRNL---DDGRVEVVWEG---EEDRAKALERWLG 63 (91)
T ss_pred HHHHHHHHHcCCEEEEEEC---CCCCEEEEEEc---CHHHHHHHHHHHh
Confidence 4578999999999998774 444 7777653 3467888888775
No 408
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=32.28 E-value=4.2e+02 Score=24.69 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC------eeEec-------------------------------cC-ceeEEEEe----
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDG------LFIFG-------------------------------TP-ATSVIALG---- 41 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g------~~vlg-------------------------------~p-~l~vVaf~---- 41 (143)
++..+++++.+..+++.|.++++ |++++ || .+.+.+-.
T Consensus 422 ~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~ 501 (714)
T PRK15400 422 KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKD 501 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCC
Confidence 45667788999999999999988 88774 22 12222101
Q ss_pred ----cCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHH
Q psy10208 42 ----SDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 42 ----~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
..++.-+.+++.|+++|=.+.. ..+..+=+.+++..+ ++.++.+++-|.+.
T Consensus 502 g~~~~~Gipg~~v~~~L~e~gI~~E~-~d~~~iLfl~s~g~t-~~~~~~L~~aL~~f 556 (714)
T PRK15400 502 GTMSDFGIPASIVAKYLDEHGIVVEK-TGPYNLLFLFSIGID-KTKALSLLRALTDF 556 (714)
T ss_pred ccccccCCCHHHHHHHHHHcCCEEEe-cCCCeEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence 0245567899999999866654 334445566665444 57777777766654
No 409
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=32.20 E-value=47 Score=24.74 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=24.3
Q ss_pred eccCceeEEEEecC--CCCHHHHHHHHhhcCceec
Q psy10208 30 FGTPATSVIALGSD--VFHIYRLSSGLNKRGWNTN 62 (143)
Q Consensus 30 lg~p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~ 62 (143)
-.+|++|++.+++- +-....+.+.++.+||.=+
T Consensus 15 PNnp~lPv~vY~~alkdtga~~~e~~~~~~gW~gs 49 (163)
T COG4297 15 PNNPQLPVRVYRQALKDTGAAQVEDHFKANGWFGS 49 (163)
T ss_pred CCCCCCcEEeeehhcccchHHHHHHHHhhcCCccc
Confidence 35799999998863 3334458899999999544
No 410
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=31.71 E-value=1.4e+02 Score=18.81 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhCCCeeEe-ccCce--eEEEEecCCCCHHHHHHHHhhcCceec
Q psy10208 10 IIETVKYIEKELRSMDGLFIF-GTPAT--SVIALGSDVFHIYRLSSGLNKRGWNTN 62 (143)
Q Consensus 10 ~~~~a~~l~~~i~~i~g~~vl-g~p~l--~vVaf~~~~~~i~~l~d~L~~rGW~v~ 62 (143)
|-.-+..+.+.|++++|..-+ .++.. -.|.|.+...+..++.+.+.+.|..+.
T Consensus 13 C~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 13 CGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred cHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 344567788999999986544 34433 566777777899999999999997654
No 411
>PRK14447 acylphosphatase; Provisional
Probab=31.70 E-value=95 Score=20.90 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=31.8
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe--eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG--IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~--ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.++.=.||.-|. +.+ +.+.+.- +++.+++|++.|++
T Consensus 22 ~~~~~A~~~gl~G~V~N~---~dG~~Vei~~qG---~~~~l~~f~~~l~~ 65 (95)
T PRK14447 22 SMKEVANRNGVRGWVRNR---SDGRTVEAVLEG---PRDAVLKVIEWARV 65 (95)
T ss_pred HHHHHHhhcCeEEEEEEC---CCCCEEEEEEEe---CHHHHHHHHHHHhh
Confidence 567888888889998774 555 7776653 35889999988874
No 412
>PRK14425 acylphosphatase; Provisional
Probab=31.41 E-value=1.2e+02 Score=20.41 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=33.5
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ .-++.+|.++.=.||.-|. +.+ +.+.+.- ..+.++.|++.|++
T Consensus 18 GVGFR---~~v~~~A~~~gl~G~V~N~---~dGsVei~~qG---~~~~le~f~~~l~~ 66 (94)
T PRK14425 18 GVGFR---DWTRDEAERLGLTGWVRNE---SDGSVTALIAG---PDSAISAMIERFRR 66 (94)
T ss_pred cccch---HHHHHHHHHhCCEEEEEEC---CCCeEEEEEEe---CHHHHHHHHHHHhh
Confidence 35553 3578899999999998774 444 7776653 23668888887753
No 413
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=30.58 E-value=1.1e+02 Score=27.81 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-----CCHHHHHHHHhhcCceec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-----FHIYRLSSGLNKRGWNTN 62 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-----~~i~~l~d~L~~rGW~v~ 62 (143)
..+.+++.|....+-++++ ||.=+ ||++++.. ...-.++.+|.++||..|
T Consensus 177 tpe~mVeSAle~~~i~e~~-~f~di------viS~KsS~~~~~V~AyRlLa~~l~~~g~dyP 231 (611)
T PRK02048 177 TPEGMVESCMEFLRICVEE-HFTDV------VISIKASNTVVMVRTVRLLVAVMEAEGMHYP 231 (611)
T ss_pred ChHHHHHHHHHHHHHHHHC-CCCcE------EEEEEeCCcHHHHHHHHHHHHHHHhcCCCCc
Confidence 4566888888888888888 56432 77777642 233467889999999876
No 414
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=30.57 E-value=1.6e+02 Score=19.74 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCce-ecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 48 YRLSSGLNKRGWN-TNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 48 ~~l~d~L~~rGW~-v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
-.+...|...||. +.-.+-...++|.+-.. ..+.-=+++++.++.+-+||
T Consensus 20 ~ti~~aL~~lg~~~V~~vR~gK~~el~ld~~-----~~e~a~~~v~~mcekLLaNp 70 (83)
T COG1828 20 ETIEKALHRLGYNEVSDVRVGKVIELELDAE-----SEEKAEEEVKEMCEKLLANP 70 (83)
T ss_pred HHHHHHHHHcCCcccceeeeeeEEEEEecCc-----chhHHHHHHHHHHHHHhCCC
Confidence 4778999999998 88777777778777531 23344467888888888888
No 415
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=30.50 E-value=3.2e+02 Score=22.75 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=31.2
Q ss_pred HHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 49 RLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 49 ~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.+.+.|.++|-.+.... ++.++ +++++ +++.++++++-|+++++.
T Consensus 378 ~~~~~l~~~Gv~v~~~~-~~~~~--l~~~~-t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 378 KFFHEMLDKGVFLPPSQ-FEACF--LSAAH-TEEDIENTIEAAEEVFAE 422 (423)
T ss_pred HHHHHHHHCCeEEecCC-cccee--eECCC-CHHHHHHHHHHHHHHHhh
Confidence 57788889996665432 23344 45555 468899999999888765
No 416
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=30.23 E-value=1.7e+02 Score=19.53 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=30.9
Q ss_pred CHHHHHHHHhhcCceecCC----CCCCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSL----QFPVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~----~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+|..-++|.+.||.-... ..|+--...+|+.- +...++..+..++..+.+
T Consensus 41 tlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~G--r~~l~~~~~~~~~~~~~i 95 (100)
T TIGR03433 41 SLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAG--RKQLAAETESWARLSAAI 95 (100)
T ss_pred cHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHH--HHHHHHHHHHHHHHHHHH
Confidence 5899999999999988732 12333335555322 355555555555554444
No 417
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=30.15 E-value=3e+02 Score=23.44 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=28.6
Q ss_pred eeEec--cCceeEEEEecCCCCHHHHHHHHhhcCceecC
Q psy10208 27 LFIFG--TPATSVIALGSDVFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 27 ~~vlg--~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~ 63 (143)
++..+ |.+.-+|++.|..-.+-+..+.||++|..+..
T Consensus 252 ~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 252 IETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred ceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 34444 46788999998777788999999999986654
No 418
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=29.71 E-value=1.5e+02 Score=18.85 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=30.6
Q ss_pred CceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCCCC
Q psy10208 58 GWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGL 104 (143)
Q Consensus 58 GW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~ 104 (143)
||.+... |..++-.+. .-+..-.-.|++.+.+..++...+|.-
T Consensus 1 gW~~~~~--~~~l~r~f~--f~~f~~a~~f~~~va~~ae~~~HHP~i 43 (76)
T cd00913 1 GWELADD--GLKLERTFR--FKNFVEALEFVNAVGEIAEAEGHHPDL 43 (76)
T ss_pred CCcCcCC--CCeEEEEEE--cCCHHHHHHHHHHHHHHHHHcCCCCCE
Confidence 7887432 445654443 223478889999999999999999964
No 419
>PF01797 Y1_Tnp: Transposase IS200 like; InterPro: IPR002686 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This entry represents a domain found in transposases for IS200 from Escherichia coli []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2F5G_B 2F4F_B 2EC2_F 2XM3_C 2XQC_D 2XO6_A 2XMA_E 2VJV_B 2VIH_B 2VJU_A ....
Probab=29.67 E-value=1.3e+02 Score=20.24 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=28.7
Q ss_pred hhcCceecCCC-CCCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 55 NKRGWNTNSLQ-FPVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 55 ~~rGW~v~~~~-~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
++.||.+-+.- +|..+|+.+..+-. ..+.+|+..++....
T Consensus 36 ~~~~~~i~~~~vm~nHvHllv~~~~~--~~is~~~~~lK~~~s 76 (121)
T PF01797_consen 36 EEYGIEIIAFVVMPNHVHLLVSIPPK--QSISKFMQRLKGRSS 76 (121)
T ss_dssp HHTTEEEEEEEEETTEEEEEEEE-TT--S-HHHHHHHHHHHHH
T ss_pred ccccceeeeecccCcccceeeeeccc--ccchheeeccccccc
Confidence 56899988775 68899988865332 358888998887654
No 420
>PRK14450 acylphosphatase; Provisional
Probab=29.41 E-value=1.3e+02 Score=20.04 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=30.3
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe--eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG--IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~--ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.-|. +.+ +.+.+.- +++.++.|++.|++
T Consensus 20 ~v~~~A~~~~l~G~V~N~---~dG~~Vei~~~G---~~~~v~~f~~~l~~ 63 (91)
T PRK14450 20 FTRTQATRLGLCGYAKNL---ANGNEVEVVAEG---DKDSLLEFLDLLRS 63 (91)
T ss_pred HHHHHHHHcCCEEEEEEC---CCCCEEEEEEEe---CHHHHHHHHHHHhh
Confidence 467888999899997664 454 6766543 35778888888763
No 421
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=29.23 E-value=2e+02 Score=20.01 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=35.0
Q ss_pred eeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHH
Q psy10208 35 TSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 35 l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
+-|+......-++..+-++|++.|-.+..... ..+-+.| |+.+..+.+..+|+++++
T Consensus 55 iRv~~~~~~~~~~~~v~~~l~~lG~~~E~~~~-~~lav~V-P~~~~~~~i~~~L~~~~e 111 (117)
T PF14085_consen 55 IRVIFDDPGPDDIEAVREELEALGCTVEGFSE-RMLAVDV-PPSVDFDAIKDYLDRGEE 111 (117)
T ss_pred EEEEEcCCcchhHHHHHHHHHHcCCeEEccCC-CEEEEEE-CCCCCHHHHHHHHHhhhh
Confidence 33333333233577888888888877766554 4455555 445556677777777654
No 422
>PRK14436 acylphosphatase; Provisional
Probab=29.03 E-value=1.3e+02 Score=20.15 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=30.5
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.-|. +.+ +.+.+.- +++.++.|++.|++
T Consensus 22 ~v~~~A~~l~l~G~V~N~---~dG~Vei~~qG---~~~~i~~f~~~l~~ 64 (91)
T PRK14436 22 SMQREARKLGVNGWVRNL---PDGSVEAVLEG---DEERVEALIGWAHQ 64 (91)
T ss_pred HHHHHHHHcCCEEEEEEC---CCCcEEEEEEc---CHHHHHHHHHHHhh
Confidence 467888898889998774 444 7777753 34678888887763
No 423
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.97 E-value=41 Score=20.39 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=14.0
Q ss_pred CHHHHHHHHhhcCcee
Q psy10208 46 HIYRLSSGLNKRGWNT 61 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v 61 (143)
|...+.+.|++.||.+
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 6779999999999975
No 424
>PRK10667 Hha toxicity attenuator; Provisional
Probab=28.92 E-value=34 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.8
Q ss_pred cCCCcchHHHHHHHHHHhhcCC
Q psy10208 118 SIPDRSIIGDFTRYYIDATYYT 139 (143)
Q Consensus 118 ~ipd~~~v~~~~~~~~d~~y~~ 139 (143)
+-|+.+.+-+++.+|||.+|.+
T Consensus 65 KYp~~~~l~~~ideYLDeTy~L 86 (122)
T PRK10667 65 KYPEDSKLIEQIDEYLDDTYML 86 (122)
T ss_pred cCCcHhhHHHHHHHHHHHHHHH
Confidence 4577888899999999999876
No 425
>COG3100 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.66 E-value=64 Score=22.33 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=26.9
Q ss_pred eccCceeEEEEecC------CCCHHHHHHHHhhcCceecCCCCCC
Q psy10208 30 FGTPATSVIALGSD------VFHIYRLSSGLNKRGWNTNSLQFPV 68 (143)
Q Consensus 30 lg~p~l~vVaf~~~------~~~i~~l~d~L~~rGW~v~~~~~P~ 68 (143)
.|.|++ +.-|..+ ..|+..+-..+.+.|++++..+-|.
T Consensus 45 FG~Pq~-vm~l~L~~rk~L~n~dv~kV~~~i~~QGfyLQ~pp~~e 88 (103)
T COG3100 45 FGKPQL-VMMLNLDGRKKLVNADVEKVKQAIEEQGFYLQLPPPPE 88 (103)
T ss_pred cCCCeE-EEEeccchhHHHHHhhHHHHHHHHHhcceeEecCCCcH
Confidence 466765 3344432 4688899999999999998766544
No 426
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=28.57 E-value=1.6e+02 Score=24.38 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=33.1
Q ss_pred eeEEEEec--CCCCHHHHHHHHhhcCceecCCCCCCe-----eeEEEEeccc
Q psy10208 35 TSVIALGS--DVFHIYRLSSGLNKRGWNTNSLQFPVG-----IHICITHMHT 79 (143)
Q Consensus 35 l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~~~P~~-----ihi~v~~~h~ 79 (143)
..||+|+- +..|.-.+.++++++|=.+--+.||.. ..+.+||.|+
T Consensus 91 ~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPncpGiI~Pg~~kiGimp~~i 142 (293)
T COG0074 91 KLVVIITEGIPVLDMLELKRYAREKGTRLIGPNCPGIITPGECKIGIMPGNI 142 (293)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHhcCCEEECCCCCccCcCCcceeeechhhh
Confidence 34788875 346777888999999977766666543 5788888776
No 427
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.40 E-value=3.6e+02 Score=22.70 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CC-CCHHHHHHHHhh-cCceecCCC---CC---CeeeEEEEecc
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DV-FHIYRLSSGLNK-RGWNTNSLQ---FP---VGIHICITHMH 78 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~-~~i~~l~d~L~~-rGW~v~~~~---~P---~~ihi~v~~~h 78 (143)
+...+.++.+.++|.+++|+.+...|+-....|-. +. .|-.+++++|-+ .|=.+.+.. .+ ..+|+++....
T Consensus 296 ~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~ 375 (393)
T COG0436 296 EEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSE 375 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCH
Confidence 56677888899999999999998878776777754 22 688888988765 566554432 22 24777776432
Q ss_pred cChhHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELA 96 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~ 96 (143)
+.+++.++-+++.+.
T Consensus 376 ---~~l~~a~~rl~~~~~ 390 (393)
T COG0436 376 ---ETLEEALRRLARFLA 390 (393)
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 566666666655544
No 428
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=27.60 E-value=2.2e+02 Score=21.02 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 44 VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 44 ~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.-.+-.+...+...+-.+++..-+.-+++.|-+ .+ .+.-++++..+++..+..+
T Consensus 54 ~~~i~~I~kAI~~s~l~l~p~~d~~~i~v~iP~-~T-~E~R~~l~k~~k~~~E~~k 107 (165)
T PF01765_consen 54 PSLIKAIEKAIQKSNLNLNPQNDGNTIRVPIPP-PT-EERRKELVKQAKKIAEEAK 107 (165)
T ss_dssp TTHHHHHHHHHHHTTSSSEEEEETTEEEEE--S-SS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHCCCCCCcccCCcEEEEECCC-CC-HHHHHHHHHHHHHHHHHHH
Confidence 335678888888766555555666778887743 33 4666666666655554433
No 429
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=27.50 E-value=4.2e+02 Score=23.17 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhhC---CCeeEecc--CceeEEEEecC-CCC-----------HHHHHHHHhhcCceecCCCCCCe
Q psy10208 7 TRSIIETVKYIEKELRSM---DGLFIFGT--PATSVIALGSD-VFH-----------IYRLSSGLNKRGWNTNSLQFPVG 69 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i---~g~~vlg~--p~l~vVaf~~~-~~~-----------i~~l~d~L~~rGW~v~~~~~P~~ 69 (143)
.+++-+.+.+|+++|+++ -|+..-.. -.+--|-|+.. ..| .-.+.+.|-++|-+++..++-
T Consensus 325 y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~e-- 402 (432)
T COG0001 325 YERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFE-- 402 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcccc--
Confidence 445556677777777652 14444332 23444556653 222 223445677778776643321
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
-..++..|+ ++.++.+++-++++.+.+..
T Consensus 403 -a~flS~aht-e~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 403 -AGFLSTAHT-EEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred -ceeeecccC-HHHHHHHHHHHHHHHHHhhc
Confidence 134556676 58999999988888777653
No 430
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=27.41 E-value=3.6e+02 Score=22.34 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhc---CceecCCCCCCeeeEEEEecccC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKR---GWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~r---GW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
..-=+-+.+.++.|.+.+++-+-+--+|..++-++.-..+..+...+++++++. -......+....+++-+....-.
T Consensus 257 ~~GD~lL~~vA~~L~~~l~~~d~laRlggdeFavll~~~~~~~a~~~~~rl~~~l~~~~~~~~~~i~~s~SiGia~~~~~ 336 (366)
T PRK10245 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMSRVHEGLNTLRLPNAPQVTLRISVGVAPLNPQ 336 (366)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEEcCcEEEEEeCCCCHHHHHHHHHHHHHHHhhcccCCCCceEEEEEEEEEEcCCC
Confidence 333344455677777777654323334556665554333333344555555432 11111111111233333321111
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC
Q psy10208 81 PGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.+..+++++....++...++.+
T Consensus 337 ~~~~~~Ll~~Ad~AL~~AK~~g 358 (366)
T PRK10245 337 MSHYREWLKSADLALYKAKNAG 358 (366)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC
Confidence 2456888888888888888664
No 431
>KOG3487|consensus
Probab=27.15 E-value=1.3e+02 Score=22.03 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=32.4
Q ss_pred cCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 57 RGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 57 rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.+|.++++-.+..+++.+...+-..+-+..|..++.+-.-.---+|
T Consensus 67 ne~~VSAyvTas~i~f~mlh~~~~~~~ik~Ffqev~elyik~lmnp 112 (139)
T KOG3487|consen 67 NELFVSAYVTASHIRFIMLHINRADDNIKLFFQEVHELYIKTLMNP 112 (139)
T ss_pred cceeEEEEEccCcEEEEEEeeccccccHHHHHHHHHHHHHHHHhCc
Confidence 5899999988888887665444345778899999988743333344
No 432
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=27.11 E-value=1.9e+02 Score=24.96 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=18.3
Q ss_pred EecCCCCHHHHHH---HHhhcCceec
Q psy10208 40 LGSDVFHIYRLSS---GLNKRGWNTN 62 (143)
Q Consensus 40 f~~~~~~i~~l~d---~L~~rGW~v~ 62 (143)
+-++++|.+.+.+ .|.++||...
T Consensus 330 i~gd~ide~~i~~Il~~L~~~G~~~d 355 (407)
T cd01569 330 IQGDGITLERIEEILERLKAKGFASE 355 (407)
T ss_pred EEcCCCCHHHHHHHHHHHHHCCCccc
Confidence 4667888887776 7888999888
No 433
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=26.99 E-value=2.4e+02 Score=23.35 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEecc--C---ceeEEEEecC----CCCHHHHHHHHhhcCce
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGT--P---ATSVIALGSD----VFHIYRLSSGLNKRGWN 60 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p---~l~vVaf~~~----~~~i~~l~d~L~~rGW~ 60 (143)
..++.++-.++++++.++|+++++..+... + ...+++|..+ +++-.++.+.|+++|=.
T Consensus 253 l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~ 319 (379)
T PRK11658 253 LEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIG 319 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCC
Confidence 345556667778888899988864322221 1 1123444432 35677899999998843
No 434
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=26.96 E-value=2.4e+02 Score=21.01 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=39.1
Q ss_pred CHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC---CCCCCChhhHHhhhccCCC
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNP---GLQLEGVMAMYGKSHSIPD 121 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p---~~~~~~~a~~Yg~~~~ipd 121 (143)
|.+.+.-+++..-|+|....+ --.| +..+++.+.+.+.++++...= ...+-++.+-|--..+|+.
T Consensus 26 d~~~Ly~k~~~~HWnV~G~~F--------~~lH---e~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~ike 93 (156)
T COG0783 26 DLYVLYLKTHNYHWNVKGPNF--------FALH---EKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSIKE 93 (156)
T ss_pred HHHHHHHHHhhcccceeCccH--------HHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCCcc
Confidence 466777777888899886553 2345 467777777776666555321 1223345555666666663
No 435
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=26.92 E-value=1.8e+02 Score=20.45 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=22.9
Q ss_pred HHHHHHhhcCceecCC--CCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 49 RLSSGLNKRGWNTNSL--QFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 49 ~l~d~L~~rGW~v~~~--~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
-++..+-++||.=..| ..|+ ..+++|=+.+..+++++.+
T Consensus 65 ll~relvqkgWvGYiya~~~P~-------------k~leei~~~i~keiEelEk 105 (113)
T COG5625 65 LLARELVQKGWVGYIYATTPPP-------------KPLEEIEEEIMKEIEELEK 105 (113)
T ss_pred HHHHHHHhccceeeEecCCCCc-------------hHHHHHHHHHHHHHHHHHH
Confidence 3556677899954444 3332 4566666666666666554
No 436
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=26.69 E-value=3.9e+02 Score=22.46 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCceecCC-CCCCeeeEEEEecc-cChhHHHHHHHHHHHHH
Q psy10208 48 YRLSSGLNKRGWNTNSL-QFPVGIHICITHMH-TQPGVADKFISDVREEL 95 (143)
Q Consensus 48 ~~l~d~L~~rGW~v~~~-~~P~~ihi~v~~~h-~~~~~~~~fl~Dl~~ai 95 (143)
..+...|.++|=.+... .....+|+ +++. .+++.+++.++-|++++
T Consensus 371 ~~l~~~~~~~Gv~i~p~~~f~~~lRl--~p~l~~~~~~l~~~~~~l~~~l 418 (420)
T TIGR00700 371 ERIATAAHAAGLLLLTCGMFGNIIRF--LPPLTIGDELLSEGLDILCAIL 418 (420)
T ss_pred HHHHHHHHHCCeEEeccCCCCCEEEE--ECCCCcCHHHHHHHHHHHHHHh
Confidence 35666677899666432 23344555 4433 45678888888887775
No 437
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=26.67 E-value=3.3e+02 Score=21.74 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHH
Q psy10208 10 IIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFIS 89 (143)
Q Consensus 10 ~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~ 89 (143)
+.+++.+|.+-|++. |++.- +=+++...+ ...++..+|.++||.+...+.- |-.+. . --.+++-+
T Consensus 26 v~~nt~riL~lL~~~-gikAT----FFv~g~~~e--~~p~lir~i~~~GhEIgsHg~s---H~~l~--~---ls~ee~~~ 90 (265)
T TIGR03006 26 VERNTDRILDLLDRH-GVKAT----FFTLGWVAE--RYPELVRRIVAAGHELASHGYG---HERVT--T---QTPEAFRA 90 (265)
T ss_pred HHHhHHHHHHHHHHc-CCcEE----EEEeccchh--hCHHHHHHHHHcCCEeeecccc---CcCch--h---CCHHHHHH
Confidence 445677777777775 44320 101111111 2247899999999999876532 11111 1 23567778
Q ss_pred HHHHHHHHHHcC
Q psy10208 90 DVREELAIIMQN 101 (143)
Q Consensus 90 Dl~~ai~~~~~~ 101 (143)
||+++.+.+++.
T Consensus 91 eI~~s~~~Le~i 102 (265)
T TIGR03006 91 DIRRSKALLEDL 102 (265)
T ss_pred HHHHHHHHHHHH
Confidence 888887777753
No 438
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=26.60 E-value=3.8e+02 Score=22.35 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceecCC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNSL 64 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~~ 64 (143)
.+++..+++..+++.|++.|.++-+.-|. -.+|+|..++ -.+..+.+.|+- .|+.+...
T Consensus 250 R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~ 329 (382)
T TIGR02080 250 RMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGV 329 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceEeccCCCC
Confidence 46777889999999999988877543331 3489998752 224556666653 23322211
Q ss_pred -------------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 65 -------------QF-----------PVGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 65 -------------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. |.-+|++|-- |.++.+++||+.|++.
T Consensus 330 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl-----E~~~dl~~dl~~al~~ 381 (382)
T TIGR02080 330 ESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL-----EDADDLIADLEQGLRA 381 (382)
T ss_pred cceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc-----CCHHHHHHHHHHHHhh
Confidence 01 1124666543 7899999999999863
No 439
>KOG0434|consensus
Probab=26.41 E-value=70 Score=30.08 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=10.4
Q ss_pred CeeEeccCceeEEEEecCC
Q psy10208 26 GLFIFGTPATSVIALGSDV 44 (143)
Q Consensus 26 g~~vlg~p~l~vVaf~~~~ 44 (143)
+|.++++|..+.||||+.+
T Consensus 208 ~F~li~~~~~slvAWTTTP 226 (1070)
T KOG0434|consen 208 AFPLIGDPNVSLVAWTTTP 226 (1070)
T ss_pred EeeccCCcceeEEEEecCC
Confidence 3445555555666665543
No 440
>PRK14451 acylphosphatase; Provisional
Probab=26.36 E-value=1.6e+02 Score=19.50 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=31.5
Q ss_pred CCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 45 FHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 45 ~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
+-++.+|.+|.=.||.-|. +.+ +.+.+.- +++.+++|++.|++
T Consensus 20 ~~~~~~A~~~gl~G~V~N~---~dG~Vei~~qG---~~~~i~~f~~~l~~ 63 (89)
T PRK14451 20 ASAKKLAEQLMISGWARNL---ADGRVEVFACG---KEDKLEEFYTWLQK 63 (89)
T ss_pred HHHHHHHHHhCCEEEEEEC---CCCCEEEEEEE---CHHHHHHHHHHHhh
Confidence 3578889999999998774 444 7776653 35778888888763
No 441
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=26.05 E-value=4.2e+02 Score=22.63 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=37.7
Q ss_pred eEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 36 SVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 36 ~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
|++.+ ++.|+...++.+-...+.-+.+.|-..-|+.|- +++.|+|++.|.+.++.++-
T Consensus 237 p~iV~--~dADl~~aa~~i~~~~f~~~GQ~C~a~~rv~V~-----~~i~d~f~~~l~~~~~~~~~ 294 (455)
T cd07148 237 PVIVD--RSADLDAMIPPLVKGGFYHAGQVCVSVQRVFVP-----AEIADDFAQRLAAAAEKLVV 294 (455)
T ss_pred ceEEC--CCCCHHHHHHHHHHHHHhcCCCCccCCeEEEEc-----HhHHHHHHHHHHHHHhcCCC
Confidence 45544 345666666666655554444445444455553 47899999999999988874
No 442
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=25.91 E-value=4.4e+02 Score=22.91 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CC-C-------CHHHHHHHHhh-cCceecCCC-----CCCeeeE
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DV-F-------HIYRLSSGLNK-RGWNTNSLQ-----FPVGIHI 72 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~-~-------~i~~l~d~L~~-rGW~v~~~~-----~P~~ihi 72 (143)
++.-+..+.+.++|++. |+..+ .|.-..++|-. +. + +..++.+.|.+ .|..+.... .|..+||
T Consensus 338 ~~l~~r~~~l~~~L~~~-gi~~~-~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri 415 (496)
T PLN02376 338 RRLGIRHKVFTTGIKKA-DIACL-TSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRI 415 (496)
T ss_pred HHHHHHHHHHHHHHHHC-CCccc-CCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEE
Confidence 34445556677788875 66654 35554555532 11 1 22566776665 599887642 2567999
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
++.. ...+.++.-++.|++++..-+
T Consensus 416 ~fa~--~~~~~l~~al~rl~~~l~~~~ 440 (496)
T PLN02376 416 CFAN--MDDDTLHVALGRIQDFVSKNK 440 (496)
T ss_pred EeeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 9974 234677777888888776433
No 443
>PRK14440 acylphosphatase; Provisional
Probab=25.83 E-value=1.5e+02 Score=19.67 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=29.3
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
-++..|.+|.=+||.-|. +.+ +.+.+.- .++.++.|+++|+
T Consensus 21 ~v~~~A~~~gl~G~V~N~---~dG~Vei~~~G---~~~~v~~f~~~l~ 62 (90)
T PRK14440 21 FVQIHAIRLGIKGYAKNL---PDGSVEVVAEG---YEEALSKLLERIK 62 (90)
T ss_pred HHHHHHHHcCCEEEEEEC---CCCCEEEEEEc---CHHHHHHHHHHHh
Confidence 467889999999997664 443 7776653 3467888887776
No 444
>PRK14443 acylphosphatase; Provisional
Probab=25.45 E-value=1.4e+02 Score=20.17 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 45 FHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 45 ~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
..++.+|.+|.=.||.-|. +.+ +.+.+.- +.+.++.|++.|++
T Consensus 21 ~~~~~~A~~~gl~G~V~N~---~dG~Vei~~qG---~~~~l~~f~~~l~~ 64 (93)
T PRK14443 21 YTTKHVAYKYDISGTVKNL---DDGSVEIHAIA---EEENLNKFIDAIKK 64 (93)
T ss_pred HHHHHHHHHcCCEEEEEEC---CCCEEEEEEEC---CHHHHHHHHHHHhc
Confidence 3578899999999998773 444 8887753 23567888777754
No 445
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=25.06 E-value=2e+02 Score=21.40 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHh-hcCceecC
Q psy10208 13 TVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLN-KRGWNTNS 63 (143)
Q Consensus 13 ~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~-~rGW~v~~ 63 (143)
+|.+|-.||+..++|.+-. .-|..+|-.+|. +-||.|..
T Consensus 25 IaakIfaGLR~~Gny~Lp~------------~aD~NeVLkALc~eAGw~Ve~ 64 (150)
T PF05687_consen 25 IAAKIFAGLRAHGNYKLPK------------HADNNEVLKALCREAGWTVEP 64 (150)
T ss_pred HHHHHHHHHHHhcCCCCCC------------cCCHHHHHHHHHHhCCEEEcc
Confidence 4677888888887776521 335678887775 57999965
No 446
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=25.03 E-value=1.6e+02 Score=25.57 Aligned_cols=69 Identities=19% Similarity=0.140 Sum_probs=44.5
Q ss_pred eEeccCc--eeEEEEec---CCCCHHHHHHHHhhcCceecCCCCCCee----eEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 28 FIFGTPA--TSVIALGS---DVFHIYRLSSGLNKRGWNTNSLQFPVGI----HICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 28 ~vlg~p~--l~vVaf~~---~~~~i~~l~d~L~~rGW~v~~~~~P~~i----hi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+.+|+|+ .|+|-+.. ++=..--+..-|++-|+.+..|+.|.=+ ||+|...-++.+....+.+.++++..
T Consensus 35 ~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~ 112 (427)
T COG0285 35 ERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAG 112 (427)
T ss_pred HHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHHHHHHhc
Confidence 3467774 55666553 2323345566677899999999999844 67777655566666666665555544
No 447
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=24.97 E-value=3e+02 Score=20.68 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 47 IYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+-.+..++...++.++++.....+++.+ |+.+ ++.=.+++..++...+
T Consensus 71 i~~I~kAI~~s~l~l~P~~dg~~iri~i-P~lT-~E~R~~lvK~~k~~~E 118 (179)
T cd00520 71 IKAIEKAILNSDLGLNPNNDGAVIRVNL-PPLT-EERRKELVKDAKKIAE 118 (179)
T ss_pred HHHHHHHHHHCCCCCCcCcCCCEEEecC-CCCC-HHHHHHHHHHHHHHHH
Confidence 4567788888999998877767788877 4444 4555555555444433
No 448
>COG4302 EutC Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]
Probab=24.58 E-value=47 Score=27.09 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCeeEeccCceeEEEEecCCCC-HHHHHHHHhhcCceecCCC
Q psy10208 14 VKYIEKELRSMDGLFIFGTPATSVIALGSDVFH-IYRLSSGLNKRGWNTNSLQ 65 (143)
Q Consensus 14 a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~-i~~l~d~L~~rGW~v~~~~ 65 (143)
.++|.+.-...|.+.++.-..++-.|+...-.+ ++.+.+.|+.+||.+.+.-
T Consensus 148 v~~lk~~~~~npdvqivVaDGLSa~AI~an~~~il~~l~eglk~~G~svgt~~ 200 (294)
T COG4302 148 VEALKAHCVANPDVQIVVADGLSALAITANYEPILPPLMEGLKAAGLSVGTPF 200 (294)
T ss_pred HHHHHHhhccCCCeEEEecCcccHHHHHhhHHHHHHHHHHHHHhcCcccCChh
Confidence 344555555555555544333433333332122 3578899999999998654
No 449
>PRK12414 putative aminotransferase; Provisional
Probab=24.48 E-value=4e+02 Score=21.85 Aligned_cols=83 Identities=10% Similarity=-0.005 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC---CCCHHHHH-HHHhhcCceecCCC-C------CCeee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD---VFHIYRLS-SGLNKRGWNTNSLQ-F------PVGIH 71 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~---~~~i~~l~-d~L~~rGW~v~~~~-~------P~~ih 71 (143)
.++.+...+.++.+.+.|++. |+++. .|.-..+.| ..+ +.+-.++. +.|.+.|..+.... + ...+|
T Consensus 287 ~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iR 364 (384)
T PRK12414 287 LGLGAFYQRKRDLLARELAGS-RFELL-PSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIR 364 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCeec-CCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEE
Confidence 344556667777888899887 67754 455555555 322 22334555 66778899876642 1 24588
Q ss_pred EEEEecccChhHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDV 91 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl 91 (143)
|++.. .++.+++-++.|
T Consensus 365 is~~~---~~~~~~~~~~rl 381 (384)
T PRK12414 365 LSFSK---DDATLVEGARRL 381 (384)
T ss_pred EEecC---CHHHHHHHHHHH
Confidence 88874 234444444433
No 450
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=24.40 E-value=4.4e+02 Score=22.36 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=38.4
Q ss_pred eEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh-HHHHHHHHHHHHHHHHHc
Q psy10208 36 SVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG-VADKFISDVREELAIIMQ 100 (143)
Q Consensus 36 ~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~-~~~~fl~Dl~~ai~~~~~ 100 (143)
|++.+. +-|+...++.+....+.-+.+.|-..-|+.|- ++ +.++|++.|.+.++.++-
T Consensus 212 ~~iV~~--daDl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~-----~~~i~d~f~~~l~~~~~~~~~ 270 (431)
T cd07095 212 PLVVWD--VADIDAAAYLIVQSAFLTAGQRCTCARRLIVP-----DGAVGDAFLERLVEAAKRLRI 270 (431)
T ss_pred eEEECC--CCCHHHHHHHHHHHHHHhCCCCCCCCeEEEEc-----CcchHHHHHHHHHHHHHhCCC
Confidence 344443 45666767776665555455555554556553 35 899999999999998884
No 451
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=24.24 E-value=1.1e+02 Score=21.97 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhc-CceecCC----------CCCCeeeEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKR-GWNTNSL----------QFPVGIHICI 74 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~r-GW~v~~~----------~~P~~ihi~v 74 (143)
.+.|.+++..|.++|-+--++.. .++--|-|+. +++|-.-=+..+|+. ||.--+. ..|..||+.+
T Consensus 15 ~e~I~~at~eLl~~i~~~N~l~~---~dIvSi~FT~T~DL~a~fPA~a~R~~~g~~~Vpl~c~~E~~V~gsL~~cIRvLi 91 (118)
T PF07736_consen 15 PEEILEATRELLEEILERNELSP---EDIVSIIFTVTPDLDAAFPAAAARELPGWDDVPLMCAQEMDVPGSLPRCIRVLI 91 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--G---GGEEEEEEEE-TT--SS-TCHHHHHTTTGTTSEEEEEE----TTS-SSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH---HHEEEEEEEeCCCcCccChHHHHHccCCCCccceeccCcCCCCCCCcceeEEEE
Confidence 46788888888888755434442 3343444664 344433336778887 9954332 2366788755
Q ss_pred E
Q psy10208 75 T 75 (143)
Q Consensus 75 ~ 75 (143)
.
T Consensus 92 ~ 92 (118)
T PF07736_consen 92 H 92 (118)
T ss_dssp E
T ss_pred E
Confidence 4
No 452
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=24.23 E-value=4.5e+02 Score=22.36 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=36.6
Q ss_pred eEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 36 SVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 36 ~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
|++.+. +-|+...++.+-.-.+.-+.+.|-..-|+.| | +++.++|++.|.+.++.++-
T Consensus 231 p~iV~~--dAdl~~a~~~i~~~~~~~sGQ~C~a~~rv~V---~--~~i~d~f~~~L~~~~~~~~~ 288 (454)
T cd07101 231 PMIVLE--DADLDKAAAGAVRACFSNAGQLCVSIERIYV---H--ESVYDEFVRRFVARTRALRL 288 (454)
T ss_pred eEEECC--CCCHHHHHHHHHHHHHhcCCCCcccCeEEEE---c--HHHHHHHHHHHHHHHhhCCC
Confidence 344443 4466666666655444434444444445555 2 47889999999999998873
No 453
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=24.12 E-value=1.3e+02 Score=20.03 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=5.3
Q ss_pred CHHHHHHHHhh
Q psy10208 46 HIYRLSSGLNK 56 (143)
Q Consensus 46 ~i~~l~d~L~~ 56 (143)
|+..+-..|++
T Consensus 32 nvd~li~~lee 42 (81)
T PF11524_consen 32 NVDELIKKLEE 42 (81)
T ss_dssp SHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45455555443
No 454
>PRK14439 acylphosphatase; Provisional
Probab=24.02 E-value=1.5e+02 Score=22.37 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=34.7
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-|.|+ .-++.++.+|.=.||.-|. +.+ +.+.+.- +++.++.|++.|++
T Consensus 87 GVGFR---~fv~~~A~qlGLtGwVrNl---~DGsVEI~aQG---~ee~Ie~Fi~~L~~ 135 (163)
T PRK14439 87 GVGFR---YTTQYEAKKLGLTGYAKNL---DDGSVEVVACG---EEGQVEKLMQWLKS 135 (163)
T ss_pred CcCch---HHHHHHHHHhCCEEEEEEC---CCCCEEEEEEc---CHHHHHHHHHHHhh
Confidence 35553 3578899999999998774 444 7777753 34778889888874
No 455
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=23.71 E-value=1.2e+02 Score=24.27 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=30.1
Q ss_pred HHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHh---hcCceecC
Q psy10208 15 KYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLN---KRGWNTNS 63 (143)
Q Consensus 15 ~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~---~rGW~v~~ 63 (143)
+.|.+.|+++-|.+ +|+++|.=...+++|..-+++.+. ++||++-.
T Consensus 74 ~~L~~~l~k~~g~~---~v~I~i~EV~~peL~A~lvA~~IA~qLErrv~FRR 122 (233)
T COG0092 74 EKLRKELEKLFGKE---NVQINIEEVKKPELDAQLVAESIAQQLERRVSFRR 122 (233)
T ss_pred HHHHHHHHHHhCCC---CceEEEEEcCCCCcCHHHHHHHHHHHHHcccHHHH
Confidence 45666666654544 677777777777777777776665 47776643
No 456
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=23.70 E-value=4.6e+02 Score=22.31 Aligned_cols=54 Identities=7% Similarity=0.186 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 43 DVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 43 ~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
++-|+...++.+-.-.+.-+.+.|-..-++.|. +++.++|++.|.+.++.++-.
T Consensus 246 ~daDld~aa~~iv~~~~~~~GQ~C~a~~~v~V~-----~~i~~~f~~~l~~~~~~l~~g 299 (462)
T PF00171_consen 246 PDADLDKAAEAIVRGAFFNSGQSCTAPSRVLVH-----ESIYDEFVEALKERVAKLRVG 299 (462)
T ss_dssp TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEE-----HHHHHHHHHHHHHHHHTSEBS
T ss_pred cccccccccccccchhccccccccccccccccc-----ccccchhhhhhhhcccccccc
Confidence 445676777776665555555555555566664 378899999999999888654
No 457
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=23.57 E-value=1.6e+02 Score=16.89 Aligned_cols=45 Identities=7% Similarity=0.147 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHH
Q psy10208 47 IYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
+-.+...|+..||.+.-...-..+++.+.-+ .+.++.|.+.|.+.
T Consensus 8 ~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~---~~~~~~f~~~l~~~ 52 (56)
T PF09186_consen 8 YGKVERLLEQNGIEIVDEDYTDDVTLTVAVP---EEEVEEFKAQLTDL 52 (56)
T ss_dssp HHHHHHHHHHTTTEEEEEEECTTEEEEEEEE---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEcceecceEEEEEEEC---HHHHHHHHHHHHHH
Confidence 4466777888999887665555566555432 26788888877765
No 458
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=23.03 E-value=3.9e+02 Score=22.70 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHH-cCC
Q psy10208 44 VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIM-QNP 102 (143)
Q Consensus 44 ~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~-~~p 102 (143)
+-|+...++.+-.-.+.-+.+.|-..-++.| .+++.++|++.|.+.++.++ .+|
T Consensus 239 dadl~~aa~~iv~~~f~~sGQ~C~a~~rv~V-----~~~i~d~f~~~l~~~~~~l~~G~p 293 (448)
T TIGR01780 239 DADIDQAVEGAMASKFRNAGQTCVCANRLYV-----HDGIYDEFAKKLAEAVKKLKVGNG 293 (448)
T ss_pred CCCHHHHHHHHHHHHHHhcCCcccCCceeec-----hHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4467677777666555444444444445544 24788999999999999998 444
No 459
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=23.03 E-value=4.7e+02 Score=22.14 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=37.6
Q ss_pred eeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 35 TSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 35 l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
-|+|.+.+ -|+...++.+...-+.-+.+.|-..-++.| | +++.++|++.|.+.++.++-
T Consensus 231 ~p~iV~~d--adl~~a~~~i~~~~~~~~GQ~C~a~~ri~V---~--~~i~d~f~~~l~~~~~~l~~ 289 (453)
T cd07099 231 DPMIVLAD--ADLERAAAAAVWGAMVNAGQTCISVERVYV---H--ESVYDEFVARLVAKARALRP 289 (453)
T ss_pred CeEEECCC--CCHHHHHHHHHHHHHhcCCCCCCCCcEEEE---c--HHHHHHHHHHHHHHHHhccC
Confidence 34555543 466666776655444434444444445544 2 47889999999999998873
No 460
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=22.96 E-value=2.2e+02 Score=18.35 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc----ChhHHHHHHHHHHHHH
Q psy10208 44 VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT----QPGVADKFISDVREEL 95 (143)
Q Consensus 44 ~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~----~~~~~~~fl~Dl~~ai 95 (143)
+.|...+.|.|+...| ..|....+.+...+. ..+..+.+++-|+++.
T Consensus 29 G~NlDAl~DcL~d~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vl~da~ 79 (81)
T cd05141 29 GHNWDALADCLTDLSW-----WPAEGYVLVLRDGDALRAADPEDFATLLEILRDAA 79 (81)
T ss_pred cCCHHHHHHHHcCccc-----CCCCCeEEEEeCcHHhhhcCHHHHHHHHHHHHHHH
Confidence 4478899999999988 224456666665442 2334444554444443
No 461
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=22.71 E-value=2.1e+02 Score=21.63 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcCceecCCC-----CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 47 IYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.+++..+++||..+...+ .|..-|+++.- ......++++.+.|.+.++.++-
T Consensus 16 L~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv-~~~~~~ieqL~kQL~KLidVl~V 73 (174)
T CHL00100 16 LTRIAGLFARRGFNIESLAVGPAEQKGISRITMVV-PGDDRTIEQLTKQLYKLVNILKV 73 (174)
T ss_pred HHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEE-ECCHHHHHHHHHHHHHHhHhhEE
Confidence 5799999999999887654 34445776653 23334689999999999888774
No 462
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=22.62 E-value=65 Score=21.53 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=9.1
Q ss_pred CHHHHHHHHhhcCcee
Q psy10208 46 HIYRLSSGLNKRGWNT 61 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v 61 (143)
|+.++..+|+++|+.+
T Consensus 69 dl~~~~~~l~~~G~~~ 84 (121)
T cd07244 69 DFASLKEKLRQAGVKE 84 (121)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 4555556666666654
No 463
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=22.55 E-value=76 Score=23.21 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=28.5
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHHHcCCC
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAIIMQNPG 103 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~ 103 (143)
=|+..+....-.+--..|++.+++++..+++.|+
T Consensus 8 HHLlCmq~y~GkGYS~~FveN~d~I~~rL~~ge~ 41 (135)
T COG3543 8 HHLLCMQGYQGKGYSPAFVENYDAIAERLKAGED 41 (135)
T ss_pred hhhheeeecccccCCHHHHHHHHHHHHHhhcCCC
Confidence 3666666666678899999999999999999986
No 464
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=22.39 E-value=2.4e+02 Score=25.82 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRG 58 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rG 58 (143)
|+.++.+++-..-+.+.+-.+.+ .-.+|++ +|....+++|. .++.+++++|
T Consensus 284 G~~EVL~~l~~l~~~~~~l~~~i----~~~kPD~-vIlID~PgFNl-rLAK~lkk~G 334 (608)
T PRK01021 284 GFWEVLLALFKLWYRYRKLYKTI----LKTNPRT-VICIDFPDFHF-LLIKKLRKRG 334 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HhcCCCE-EEEeCCCCCCH-HHHHHHHhcC
Confidence 66666665544443333333332 1124665 67777788994 5999999998
No 465
>COG5616 Predicted integral membrane protein [Function unknown]
Probab=22.39 E-value=1.8e+02 Score=21.80 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=25.9
Q ss_pred HHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhh
Q psy10208 15 KYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNK 56 (143)
Q Consensus 15 ~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~ 56 (143)
.-|.-.|.++.+|.++..-. .++++.+..|+-+++++|--
T Consensus 50 EdiIt~Lsr~~~l~VIArns--sft~kgka~dv~~v~~~Lgv 89 (152)
T COG5616 50 EDIITDLSRFRELFVIARNS--SFTYKGKAVDVREVGEELGV 89 (152)
T ss_pred HHHHHHhhhccCceEEEccc--eeeccCCCCCHHHHHHHhCC
Confidence 34445566677777765432 25566677899999888743
No 466
>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins.
Probab=22.37 E-value=1.6e+02 Score=18.01 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhhHHhhhccCCC
Q psy10208 88 ISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPD 121 (143)
Q Consensus 88 l~Dl~~ai~~~~~~p~~~~~~~a~~Yg~~~~ipd 121 (143)
+.||-.++..+.+||...+ +..++--..+++|+
T Consensus 3 v~dLLr~irNi~~hp~e~k-~n~~~~~~l~~~pg 35 (58)
T smart00580 3 VRDLLRALRNILHHPREEK-GNPAIKERLGDVPG 35 (58)
T ss_pred HHHHHHHHHHHhhCcchhh-cCHHHHHHhcCCCc
Confidence 5688888888999987644 56777778888996
No 467
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.35 E-value=1e+02 Score=23.02 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=33.2
Q ss_pred CHHHHHHHHhhcCceecCCCC--CCee-------eEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQF--PVGI-------HICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~--P~~i-------hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
++..++++|.++||.+-.+.. +... ....+.... ....+...+|+..+++.+++.+
T Consensus 29 ~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~aa~~~l~~~~ 93 (218)
T PF01738_consen 29 NIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELF-APRPEQVAADLQAAVDYLRAQP 93 (218)
T ss_dssp HHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCH-HHSHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhcc
Confidence 456799999999998865432 1110 000000000 1124677889999999999988
No 468
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=22.17 E-value=1.4e+02 Score=24.19 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHH---HhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecC
Q psy10208 12 ETVKYIEKE---LRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 12 ~~a~~l~~~---i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~ 63 (143)
++|+.|.+- ++++ |++|.-++....+.+...++|...|...+...|--++.
T Consensus 25 ~AA~Ti~Ddl~~V~~~-GI~I~~~~p~~~~~i~l~D~D~~~~~~~l~~fg~~~p~ 78 (254)
T PF08735_consen 25 DAALTIHDDLERVRAM-GIEITEEPPAGAVPIELGDVDPEALRGALSAFGLELPF 78 (254)
T ss_pred HHHhhhccCHHHHHhC-CeEEEeccCCCCcceeeccCCHHHHHHHHHHcCCCCCc
Confidence 355666544 4556 99998886545555667789999999999998866554
No 469
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=21.80 E-value=3e+02 Score=20.68 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=32.6
Q ss_pred HHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 49 RLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 49 ~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
+..+.|+++||.+.- +-+++. ..+..+..+.+.+++.+..+-+-|
T Consensus 81 ~~~~~~~~~g~~i~n------iD~tii---~e~PKi~p~~~~m~~~la~~L~i~ 125 (159)
T PRK00084 81 EVARLLRAKGYRIGN------VDITII---AQRPKMAPHIEEMRANIAEDLGIP 125 (159)
T ss_pred HHHHHHHHcCCEEEE------EEEEEE---cCCCcchHHHHHHHHHHHHHhCCC
Confidence 556778899998862 444443 334677788999999998888765
No 470
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases. These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.
Probab=21.71 E-value=2.2e+02 Score=17.90 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHhh----cCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 47 IYRLSSGLNK----RGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 47 i~~l~d~L~~----rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.++...+++ .|.... .|...||++...- ++-+..+.+|.++++.+..
T Consensus 11 L~~l~~~l~~~~~~~~~r~~---~~~~~HiTL~flg---~~~~~~~~~l~~~l~~~~~ 62 (87)
T PF02834_consen 11 LNQLQERLRQALPPLGIRWV---RPFNPHITLAFLG---EVPPDQLPELIEALANIAS 62 (87)
T ss_dssp HHHHHHHHHHHCCSCTEEEG---SCGGSEEEEEEEE---EESHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhccccCCccc---CCCCCeEEEEeCC---CCCHHHHHHHHHHHHhhhc
Confidence 4556666662 233222 5677899887644 3447777778777777753
No 471
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=21.65 E-value=2.3e+02 Score=24.03 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCcee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNT 61 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v 61 (143)
|+.++.+++-..-+.+.+-.+.+ .-.+|++ +|.....+|| ..++..++++|...
T Consensus 56 G~~Evl~~l~~~~~~~~~~~~~~----~~~~pd~-vIlID~pgFN-lrlak~lk~~~~~~ 109 (373)
T PF02684_consen 56 GFVEVLKKLPKLKRLFRKLVERI----KEEKPDV-VILIDYPGFN-LRLAKKLKKRGIPI 109 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHcCCCE-EEEeCCCCcc-HHHHHHHHHhCCCc
Confidence 66777666554444333333322 1124555 6667777888 57899999999873
No 472
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=21.16 E-value=5.7e+02 Score=22.42 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=39.7
Q ss_pred eEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 36 SVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 36 ~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
|++.+. +-|+...++.+-.-.+.-+.+.|-..-|+.|- +++.|+|++-|.+.++.++-.
T Consensus 290 ~~IV~~--dAdl~~Aa~~i~~~~f~~aGQ~C~a~~rv~V~-----~~i~d~f~~~l~~~~~~l~~G 348 (522)
T cd07123 290 FHLVHP--SADVDSLVTATVRGAFEYQGQKCSAASRAYVP-----ESLWPEVKERLLEELKEIKMG 348 (522)
T ss_pred eeEECC--CCCHHHHHHHHHHHHHhcCCCCCCCCcEEEEc-----HHHHHHHHHHHHHHHhhCccC
Confidence 344443 45777778777776666555555444455553 468899999999999888743
No 473
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=20.66 E-value=5.4e+02 Score=22.01 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=38.1
Q ss_pred eEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 36 SVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 36 ~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
|++.+. +-|+...++.+....+.-+.+.|-..-|+.|- +++.++|++.|.+.++.++-
T Consensus 250 ~~iV~~--dadl~~aa~~i~~~~~~~~GQ~C~a~~rv~V~-----~~i~d~f~~~l~~~~~~~~~ 307 (473)
T cd07097 250 PLVVLD--DADLDLAVECAVQGAFFSTGQRCTASSRLIVT-----EGIHDRFVEALVERTKALKV 307 (473)
T ss_pred eeEECC--CCCHHHHHHHHHHHHHhccCCCCcCCeeEEEe-----hhHHHHHHHHHHHHHHhCCC
Confidence 344443 34666777777655555444455444556553 36889999999999998874
No 474
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.59 E-value=2.7e+02 Score=20.20 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcCceecCCCCCC
Q psy10208 47 IYRLSSGLNKRGWNTNSLQFPV 68 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~~P~ 68 (143)
+.++-+.|+.+|..++....|+
T Consensus 121 i~~~y~~L~~~G~~f~~~~~p~ 142 (144)
T cd03568 121 MSDLYKKLKNEGPDLVTPDEPE 142 (144)
T ss_pred HHHHHHHHHHcCCCCCCCCCCC
Confidence 5678899999999999766664
No 475
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=20.51 E-value=1.3e+02 Score=23.56 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10208 3 YVNTTRSIIETVKYIEKE 20 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~ 20 (143)
|+..+++|.++++.|.+.
T Consensus 82 yr~KAk~I~~~~~~l~e~ 99 (211)
T COG0177 82 YRNKAKNIKELARILLEK 99 (211)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 789999999999999887
No 476
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=20.37 E-value=1e+02 Score=18.99 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCceecCCC-----CCCeeeEEEEecccChhHHHHHHHHHH
Q psy10208 47 IYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
+..++.-.++|||.+.+.. .|.-.|++++- ......++.+..=|.
T Consensus 6 L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v-~~~~~~i~~l~~Ql~ 55 (63)
T PF13710_consen 6 LNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV-SGDDREIEQLVKQLE 55 (63)
T ss_dssp HHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE-ES-CCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE-eeCchhHHHHHHHHh
Confidence 3467777899999887764 35567787764 333455666554443
No 477
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.35 E-value=37 Score=28.02 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=32.1
Q ss_pred eeEEEEecC---CCCHHHHHHHHhhcCceecC---CCCCCeeeEEEEeccc
Q psy10208 35 TSVIALGSD---VFHIYRLSSGLNKRGWNTNS---LQFPVGIHICITHMHT 79 (143)
Q Consensus 35 l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~---~~~P~~ihi~v~~~h~ 79 (143)
..+-.|.|- .-++-+++..|-.|||.... .++|.+||++|-+ |.
T Consensus 211 ~~~~~~~Syk~~~r~~~~iA~gmi~r~~A~~nll~~~Fp~~iRlSIH~-hp 260 (330)
T COG3207 211 LTPDYQGSYKALQRDAKEIAYGMIQRSWAWGNLLADQFPRAIRLSIHP-HP 260 (330)
T ss_pred ccccccccHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhheEEeecC-CC
Confidence 334445442 34678999999999997654 5899999999964 65
No 478
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=20.29 E-value=1.5e+02 Score=22.22 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEecCCCCHHHHHHHHhhcCceecC
Q psy10208 37 VIALGSDVFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 37 vVaf~~~~~~i~~l~d~L~~rGW~v~~ 63 (143)
=+||..+ |+.+..++|+++|..+-.
T Consensus 86 HIAf~vd--DI~~~~~~L~~~Gv~~l~ 110 (191)
T cd07250 86 HIALATD--DIFATVAALRARGVEFLP 110 (191)
T ss_pred EEEEECC--CHHHHHHHHHHcCCeecc
Confidence 4777776 588999999999987753
No 479
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=20.24 E-value=5.8e+02 Score=22.14 Aligned_cols=60 Identities=10% Similarity=0.200 Sum_probs=37.8
Q ss_pred eEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHH-cCC
Q psy10208 36 SVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIM-QNP 102 (143)
Q Consensus 36 ~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~-~~p 102 (143)
|++.+. +-|+...++.+..-.+.-+.+.|-..-|+.|- +++.|+|++-|.+.++.++ .+|
T Consensus 261 p~IV~~--dADld~aa~~i~~~~f~~aGQ~C~a~~ri~V~-----~~i~d~f~~~l~~~~~~l~~G~p 321 (482)
T PRK11241 261 PFIVFD--DADLDKAVEGALASKFRNAGQTCVCANRLYVQ-----DGVYDRFAEKLQQAVSKLHIGDG 321 (482)
T ss_pred eEEEcC--CCCHHHHHHHHHHHHHhcCCCCCccCeEEEEe-----HHHHHHHHHHHHHHHhhCCCCCC
Confidence 444453 44666666665554444444444444456553 4789999999999999887 444
No 480
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=20.16 E-value=2.8e+02 Score=18.52 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC-CHHHHHHHHhh----cCceecCC--CCCCeeeEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF-HIYRLSSGLNK----RGWNTNSL--QFPVGIHICI 74 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~-~i~~l~d~L~~----rGW~v~~~--~~P~~ihi~v 74 (143)
|+...-+-+.+.++.|.+.+..-.-+--+++..+-++ +..... +...+.+.+++ ..+.+... ..+..+++.+
T Consensus 51 G~~~~~~~l~~i~~~L~~~~~~~~~~~r~~~~~f~il-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 129 (161)
T PF00990_consen 51 GYEVGDEILRQIAKRLKKQLRESDILARLGDDEFAIL-LPDTDSEEAEELAERLERLIDELNEPIDIDGIEVHLTLSIGI 129 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTSEEEEEETTEEEEE-EETCTHHHHHHHHHHHHHHHHHHCCEEESTTEEEECEEEEEE
T ss_pred ccccccccccccccccccccccccccccccchheeec-ccccccccchhhhhhhhhhhhhcccccccccccccccccceE
Confidence 4444444455566667766666332323455666443 433321 12344444443 23333222 2223344333
Q ss_pred Eecc-cChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 75 THMH-TQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 75 ~~~h-~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.... ......+++++....++...++.+
T Consensus 130 ~~~~~~~~~~~~~ll~~a~~al~~ak~~g 158 (161)
T PF00990_consen 130 AVYDPNDGQDADELLKKADQALQEAKEQG 158 (161)
T ss_dssp EEEETSTTSSHHHHHHHHHHHHHHHHHTT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3321 234689999999999999988764
No 481
>PF14322 SusD-like_3: Starch-binding associating with outer membrane; PDB: 3NQP_B 3SNX_A 3I4G_A 3HDX_A 3IHV_A 3JQ0_A 3MCX_A 3QNK_C 3MYV_B 3IV0_A ....
Probab=20.14 E-value=1.2e+02 Score=21.75 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC
Q psy10208 81 PGVADKFISDVREELAIIMQNPG 103 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~~~p~ 103 (143)
.++.+..++||++|++.+.....
T Consensus 146 ~ev~~~I~~dL~~A~~~l~~~~~ 168 (190)
T PF14322_consen 146 EEVYDFIIADLDEAINLLPDNYS 168 (190)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSTS
T ss_pred HHHHHHHHHHHHHHHHhCCcccC
Confidence 58999999999999999877654
No 482
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=20.12 E-value=2.3e+02 Score=26.40 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC-----CHHHHHHHHhhcCceec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF-----HIYRLSSGLNKRGWNTN 62 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~-----~i~~l~d~L~~rGW~v~ 62 (143)
-.+.+++.|....+-++++ ||.=+ ||+.++.+. -.-.++.+|.++||..|
T Consensus 246 tp~gmVeSAle~~~i~e~~-~f~di------viS~KsSn~~~~V~AyR~La~~L~~~g~~yP 300 (733)
T PLN02925 246 SPRGMVESAFEFARICRKL-DYHNF------VFSMKASNPVVMVQAYRLLVAEMYVLGWDYP 300 (733)
T ss_pred ChHHHHHHHHHHHHHHHHC-CCCcE------EEEEEcCChHHHHHHHHHHHHHHHhcCCCCc
Confidence 3456788888888888888 55432 778876531 23467899999999765
No 483
>PRK14444 acylphosphatase; Provisional
Probab=20.09 E-value=2.5e+02 Score=18.68 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=30.7
Q ss_pred CHHHHHHHHhhcCceecCCCCCCe-eeEEEEecccChhHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFPVG-IHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P~~-ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
-++.+|.+|.=.||.=|. +.+ +.+.+.- +++-++.|++.|++
T Consensus 22 ~v~~~A~~lgl~G~V~N~---~dG~Vei~~qG---~~~~i~~f~~~l~~ 64 (92)
T PRK14444 22 YTRDRAREAGVKGWVRNL---SDGRVEAVFEG---SRPAVQKMISWCYS 64 (92)
T ss_pred HHHHHHHHhCCEEEEEEC---CCCcEEEEEEc---CHHHHHHHHHHHHh
Confidence 578899999999998774 444 6776653 34678888887763
No 484
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=20.04 E-value=3.4e+02 Score=20.24 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 48 YRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 48 ~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
-+..+.|+++||.+. ++-+++. ..+..+..+.+.+++.+..+-+-|
T Consensus 77 ~~~~~~~~~~g~~i~------niD~tii---~e~PKi~p~~~~m~~~la~~L~~~ 122 (155)
T TIGR00151 77 RHAVALIKEKGYRIG------NVDITII---AQRPKLLPHIPAMRENIAELLGIP 122 (155)
T ss_pred HHHHHHHHHcCCEEE------EEEEEEE---cCCCcchHHHHHHHHHHHHHhCCC
Confidence 355677889999876 3444444 334677889999999998888755
Done!