RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10208
         (143 letters)



>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
           {Escherichia coli [TaxId: 562]}
          Length = 450

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 42  SDVFHIYRLSSGLNKRGWNTNSLQFPV-GIHICITHMHTQPGV----ADKFISDVREELA 96
              + +Y LS  L  RGW   +         I +  +  + G     A+  + D +  L 
Sbjct: 385 DPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK 444

Query: 97  IIMQNP 102
            +  +P
Sbjct: 445 YLSDHP 450


>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 7/103 (6%)

Query: 3   YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL---GSDVFHIYRLSSGLNKRGW 59
                R  ++     E  +       +       ++     GSD  +   L   +N    
Sbjct: 374 LQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLN-EALLERINSARK 432

Query: 60  N---TNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIM 99
                  L+    +   I     + G        +R   A ++
Sbjct: 433 IHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475


>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 98

 Score = 24.2 bits (52), Expect = 4.6
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 71  HICITHMHTQPGVADKFISDVREELAIIMQNPG 103
           ++ I +   +    + F    R      ++ PG
Sbjct: 2   YVTIVYASVKTDKTEAFKEATRMNHEQSIREPG 34


>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
           {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
          Length = 388

 Score = 23.9 bits (50), Expect = 9.8
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 1   MSYVNTTRSIIETVKYIEKELRSMDGLFIF 30
           M   +T + I   +   ++ L++    +IF
Sbjct: 359 MGECSTVQKIQFYLYGFKESLKATHPDYIF 388


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 540,487
Number of extensions: 22607
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 6
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.3 bits)