BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10209
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XPX|A Chain A, Structural Basis Of Prospero-Dna Interaction; Implications
For Transcription Regulation In Developing Cells
Length = 163
Score = 171 bits (434), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/106 (77%), Positives = 91/106 (85%), Gaps = 5/106 (4%)
Query: 1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
MEKYARQAV+EG+ +DL ++G+ E+YRVLNLHYNRNNHIEV P NFRFV+E TL
Sbjct: 63 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTL 117
Query: 61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Sbjct: 118 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 163
>pdb|1MIJ|A Chain A, Crystal Structure Of The Homeo-Prospero Domain Of D.
Melanogaster Prospero
Length = 152
Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/98 (74%), Positives = 82/98 (83%), Gaps = 5/98 (5%)
Query: 2 EKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLR 61
EKYARQAV+EG+ +DL ++G+ E+YRVLNLHYNRNNHIEV P NFRFV+E TLR
Sbjct: 60 EKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTLR 114
Query: 62 EFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSP 99
EFF+AIQ GKD E SWKKSIYKIISR DDPVPEYFKSP
Sbjct: 115 EFFRAIQGGKDTEQSWKKSIYKIISRXDDPVPEYFKSP 152
>pdb|2LMD|A Chain A, Minimal Constraints Solution Nmr Structure Of Prospero
Homeobox Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4660b
Length = 174
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Query: 1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
MEKYARQA+++GV E+L ++ +CE+YR LN+HYN+ N EV P F V + TL
Sbjct: 72 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 126
Query: 61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
REFF AI GKD +PSWKK+IYK+I ++D VPE FKSPN L++L
Sbjct: 127 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 171
>pdb|4B28|A Chain A, Crystal Structure Of Dmsp Lyase Rddddp From Roseobacter
Denitrificans
Length = 470
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 1 MEKYARQAVSEGV---------LHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQV 48
ME +AR V +GV LH+E++ GE R+L N + CGP+V
Sbjct: 252 MEDFARSKVGDGVTCENDIWAILHSENVRRGGEWIETRLLASGPRSNPWFQECGPRV 308
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 8 AVSEGVLHAEDLHVSGECEIYRVLNLHYNRNN------------------HIEVCGPQVP 49
A++ G+ H++ +RV NL+ NRNN + GP
Sbjct: 938 ALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGTKAGGPDYL 997
Query: 50 TNF---RFVIEQTLREFFKAIQDGKD 72
+F R V E T+R F I++ D
Sbjct: 998 LHFMDPRVVTENTMRRGFAPIEEDDD 1023
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N +IE T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTF 557
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N +IE T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTF 557
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N +IE T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTF 557
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N +IE T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTF 557
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N +IE T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTF 557
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N +IE T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTF 557
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N +IE T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTF 557
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N +IE T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTF 557
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N ++E T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIVETTF 557
>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
pdb|1UEG|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
Length = 130
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 51 NFRFVIEQTLREFFKAIQDGKDQEP 75
NF FV Q ++FF A DGKD +P
Sbjct: 104 NFEFV--QWFKKFFDANYDGKDYDP 126
>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
pdb|1VKA|B Chain B, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
Length = 153
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 51 NFRFVIEQTLREFFKAIQDGKDQEP 75
NF FV Q ++FF A DGKD +P
Sbjct: 117 NFEFV--QWFKKFFDANYDGKDYDP 139
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
A E + A H+S IY++L HY N +I Q N ++E T
Sbjct: 504 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGILETTF 557
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 7 QAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
AV E + A + H+S IY++L+ HY +I N VIEQT
Sbjct: 523 HAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSXVNDGGVIEQTF 576
>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
pdb|2R8U|B Chain B, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
Length = 268
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 51 NFRFVIEQTLREFFKAIQDGKDQEP 75
NF FV Q ++FF A DGKD +P
Sbjct: 104 NFEFV--QWFKKFFDANYDGKDYDP 126
>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
pdb|2QJZ|B Chain B, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 123
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 51 NFRFVIEQTLREFFKAIQDGKDQEP 75
NF FV Q ++FF A DGKD +P
Sbjct: 94 NFEFV--QWFKKFFDANYDGKDYDP 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,519,762
Number of Sequences: 62578
Number of extensions: 136222
Number of successful extensions: 263
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 26
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)