Query psy10209
Match_columns 106
No_of_seqs 58 out of 60
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 20:38:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lmd_A Prospero homeobox prote 100.0 1.2E-62 4E-67 374.3 9.7 101 1-106 72-172 (174)
2 1mij_A Protein prospero; homeo 100.0 3E-60 1E-64 355.4 7.9 94 1-99 59-152 (152)
3 3mab_A Uncharacterized protein 48.5 10 0.00036 25.3 2.2 32 3-34 15-46 (93)
4 3t0y_B NEPR; sigma factor, ant 31.7 13 0.00045 24.4 0.6 32 22-58 29-60 (68)
5 1oqj_A Glucocorticoid modulato 29.0 15 0.00051 25.3 0.5 22 59-82 44-65 (97)
6 1ufn_A Putative nuclear protei 26.4 23 0.00078 24.3 1.1 22 59-82 51-72 (94)
7 1c94_A Retro-GCN4 leucine zipp 25.1 11 0.00039 22.2 -0.5 7 32-38 17-23 (38)
8 3pw3_A Aminopeptidase C; bleom 22.8 92 0.0031 25.4 4.2 47 51-97 122-172 (383)
9 3dmc_A NTF2-like protein; stru 22.1 64 0.0022 20.9 2.6 24 49-72 7-30 (134)
10 1h5p_A Nuclear autoantigen SP1 21.7 32 0.0011 23.7 1.1 22 59-82 46-67 (95)
11 3rpj_A Curlin genes transcript 21.3 98 0.0034 22.5 3.7 33 34-68 78-111 (134)
12 3f14_A Uncharacterized NTF2-li 21.1 58 0.002 20.1 2.2 15 57-71 3-17 (112)
13 2lfw_B NEPR anti sigma factor; 20.2 26 0.0009 22.6 0.4 31 22-57 23-53 (62)
No 1
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-62 Score=374.34 Aligned_cols=101 Identities=57% Similarity=1.011 Sum_probs=100.0
Q ss_pred ChHHHHHHHHhcCCCCCceeeccchhHHHHHHhhhccCCCccccCCCCCccHHHHHHHHHHHHHHHHhcCCCCCcchhHH
Q psy10209 1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKS 80 (106)
Q Consensus 1 MEK~ARQAi~eGv~~~~~l~V~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~~tlrEFf~ai~~gkD~~psWKK~ 80 (106)
||||||||++|||+++++|+|+|||||||+|||||||+|||| ||++|++|+++||||||+||++|||+||||||+
T Consensus 72 MEKfARQa~seGv~~~~dl~V~rdsEL~R~LN~HYNk~N~~e-----vP~~F~~v~~~tLrEFf~aI~~GkD~e~sWKK~ 146 (174)
T 2lmd_A 72 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFE-----VPERFLEVAQITLREFFNAIIAGKDVDPSWKKA 146 (174)
T ss_dssp HHHHHHHHHHHTCSCGGGSSSSCTTHHHHHHHHHHCSSCSTT-----CCHHHHHHHHHHHHHHHHHHHHTCTTSTHHHHH
T ss_pred HHHHHHHHHHccCCCHHHeeecchHHHHHHHHhhccccCCCc-----CcHHHHHHHHHHHHHHHHHHhcCCcCCchHHHH
Confidence 899999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCccccCCCchhccC
Q psy10209 81 IYKIISRMDDPVPEYFKSPNFLEQLE 106 (106)
Q Consensus 81 IYKiI~kLD~~vPe~fks~~~l~~le 106 (106)
|||||||||++|||+|||||||++|.
T Consensus 147 IYKvI~kLD~~vPe~Fkspn~l~~l~ 172 (174)
T 2lmd_A 147 IYKVICKLDSEVPEIFKSPNCLQELL 172 (174)
T ss_dssp HHHHHHTTCSSCCCCSSCGGGSGGGS
T ss_pred HHHHHHHccccchHHhcCCchHHHhc
Confidence 99999999999999999999999984
No 2
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=100.00 E-value=3e-60 Score=355.42 Aligned_cols=94 Identities=80% Similarity=1.306 Sum_probs=80.6
Q ss_pred ChHHHHHHHHhcCCCCCceeeccchhHHHHHHhhhccCCCccccCCCCCccHHHHHHHHHHHHHHHHhcCCCCCcchhHH
Q psy10209 1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKS 80 (106)
Q Consensus 1 MEK~ARQAi~eGv~~~~~l~V~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~~tlrEFf~ai~~gkD~~psWKK~ 80 (106)
||||||||++|||+++++|+|+|||||||+|||||||+|||| ||++|++|+++||||||+||++|||+||||||+
T Consensus 59 MEKfARQa~seGv~~~~~l~V~rdsEl~r~LN~HYNk~N~~e-----vP~~Fl~v~~~tlrEFf~ai~~GkD~~~sWKK~ 133 (152)
T 1mij_A 59 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIE-----VPQNFRFVVESTLREFFRAIQGGKDTEQSWKKS 133 (152)
T ss_dssp HHHHHHHHHHC-------------CHHHHHHHHHHCTTCCSC-----CCHHHHHHHHHHHHHHHHHHHTTGGGSTTTTHH
T ss_pred HHHHHHHHHHcccCCHHHeeecchHHHHHHHHhhhcccCCCc-----CcHHHHHHHHHHHHHHHHHHhcCCcCCchHHHH
Confidence 899999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCccccCC
Q psy10209 81 IYKIISRMDDPVPEYFKSP 99 (106)
Q Consensus 81 IYKiI~kLD~~vPe~fks~ 99 (106)
|||||||||++|||+||||
T Consensus 134 IYKiI~kLD~~vPe~Fksp 152 (152)
T 1mij_A 134 IYKIISRMDDPVPEYFKSP 152 (152)
T ss_dssp HHHHHHTCCCCCCGGGGCC
T ss_pred HHHHHHHccccchHhhcCC
Confidence 9999999999999999998
No 3
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=48.53 E-value=10 Score=25.31 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCceeeccchhHHHHHHhh
Q psy10209 3 KYARQAVSEGVLHAEDLHVSGECEIYRVLNLH 34 (106)
Q Consensus 3 K~ARQAi~eGv~~~~~l~V~rdsELfr~LN~H 34 (106)
+.+|+-..=||.++++|.-..--+.|..|--+
T Consensus 15 ~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~ 46 (93)
T 3mab_A 15 VLEQDLIKAGIKTPVELKDVGSKEAFLRIWEN 46 (93)
T ss_dssp HHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHh
Confidence 45777788899999999999999999999654
No 4
>3t0y_B NEPR; sigma factor, anti-sigma factor, receiver domain, gene regul signal transduction, transcription regulator-protein bindin; 2.10A {Caulobacter vibrioides}
Probab=31.75 E-value=13 Score=24.44 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=25.4
Q ss_pred ccchhHHHHHHhhhccCCCccccCCCCCccHHHHHHH
Q psy10209 22 SGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQ 58 (106)
Q Consensus 22 ~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~~ 58 (106)
.|.++|=+.|--.|+.--+=. ||++|+++++.
T Consensus 29 ~rQ~~IG~~LR~~Yd~vv~Ep-----VPDrFldLL~q 60 (68)
T 3t0y_B 29 LRQQAIGVKLRQMFDEVVNEP-----VPDEFLAILRK 60 (68)
T ss_dssp -CCCHHHHHHHHHTHHHHHSC-----CCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccC-----CCHHHHHHHHH
Confidence 467899999999998765555 99999998763
No 5
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=28.99 E-value=15 Score=25.29 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHH
Q psy10209 59 TLREFFKAIQDGKDQEPSWKKSIY 82 (106)
Q Consensus 59 tlrEFf~ai~~gkD~~psWKK~IY 82 (106)
|..|| -+.+|+.+.-.||.+|.
T Consensus 44 TP~EF--e~~~gk~~sKdWK~sIR 65 (97)
T 1oqj_A 44 SPKHF--VHLAGKSTLKDWKRAIR 65 (97)
T ss_dssp CHHHH--HHHTTCGGGSCHHHHSE
T ss_pred ChHHH--hhhcCcCCCCCcchheE
Confidence 45555 34588999999999874
No 6
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=26.39 E-value=23 Score=24.29 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHH
Q psy10209 59 TLREFFKAIQDGKDQEPSWKKSIY 82 (106)
Q Consensus 59 tlrEFf~ai~~gkD~~psWKK~IY 82 (106)
|..|| -+.+|+.+.-.||-+|+
T Consensus 51 TP~EF--e~~~g~~~sKdWKrSIr 72 (94)
T 1ufn_A 51 TVKEF--LNEGGRATSKDWKGVIR 72 (94)
T ss_dssp CHHHH--HHHHTCTTCSCHHHHCE
T ss_pred ChHHh--hhhcCcccccCcceeeE
Confidence 44555 35589999999999874
No 7
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=25.15 E-value=11 Score=22.21 Aligned_cols=7 Identities=57% Similarity=1.241 Sum_probs=5.7
Q ss_pred HhhhccC
Q psy10209 32 NLHYNRN 38 (106)
Q Consensus 32 N~HYNk~ 38 (106)
.+||||+
T Consensus 17 elhynks 23 (38)
T 1c94_A 17 ELHYNKS 23 (38)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 4899986
No 8
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=22.84 E-value=92 Score=25.36 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHHH----hcCCCCCcchhHHHHHHHHhhCCCCCcccc
Q psy10209 51 NFRFVIEQTLREFFKAI----QDGKDQEPSWKKSIYKIISRMDDPVPEYFK 97 (106)
Q Consensus 51 ~Fl~v~~~tlrEFf~ai----~~gkD~~psWKK~IYKiI~kLD~~vPe~fk 97 (106)
.+-.++..-||++-... .+.++.-+.|++.||+|++.-=...|+.|.
T Consensus 122 ~m~~~L~~~Lr~~a~~~~r~l~~~~~~~~~~~~~i~~il~~~LG~pP~~F~ 172 (383)
T 3pw3_A 122 ELSALTDAMVAAIAKGKLRKLQSDENNAMLWKKAVAAVHQIYLGVPPEKFT 172 (383)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCBCTTCCBHHHHHHHHHHHHHHCCCCSSEE
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceEE
Confidence 35556667788873321 111233789999999999998888998774
No 9
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=22.12 E-value=64 Score=20.91 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=19.5
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCC
Q psy10209 49 PTNFRFVIEQTLREFFKAIQDGKD 72 (106)
Q Consensus 49 P~~Fl~v~~~tlrEFf~ai~~gkD 72 (106)
.+.=+.+++..++.|+.|+.+|.-
T Consensus 7 ~~~~~~~~~~~~~~f~~A~~~gD~ 30 (134)
T 3dmc_A 7 SDNTLKVAHQGFEFFTQGLATGEW 30 (134)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCH
Confidence 345578899999999999998853
No 10
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=21.72 E-value=32 Score=23.65 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHH
Q psy10209 59 TLREFFKAIQDGKDQEPSWKKSIY 82 (106)
Q Consensus 59 tlrEFf~ai~~gkD~~psWKK~IY 82 (106)
|..|| -+.+|+.+.--||-+|.
T Consensus 46 TP~EF--e~~~g~~~sKdWKrSIR 67 (95)
T 1h5p_A 46 TPREF--EIEGDRGASKNWKLSIR 67 (95)
T ss_dssp CHHHH--HHHHTCSTTCCHHHHCE
T ss_pred ChHHh--hhhcCcccCcCcceeeE
Confidence 44555 35589999999999874
No 11
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=21.31 E-value=98 Score=22.51 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=25.2
Q ss_pred hhccCCCccccCCCCCcc-HHHHHHHHHHHHHHHHh
Q psy10209 34 HYNRNNHIEVCGPQVPTN-FRFVIEQTLREFFKAIQ 68 (106)
Q Consensus 34 HYNk~Ndfe~~~~~vP~~-Fl~v~~~tlrEFf~ai~ 68 (106)
-|||..+.+ .-.+|+. -.+-++.||+.|...+.
T Consensus 78 lydk~G~W~--~~~i~~~~~~e~v~~Tl~~FH~kL~ 111 (134)
T 3rpj_A 78 LFDKNGDWV--NQVISKKDVIESIHETLIRFHDFLQ 111 (134)
T ss_dssp EECTTSCEE--SCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCee--eccCCcHHHHHHHHHHHHHHHHHHH
Confidence 388888887 3447777 56669999999987765
No 12
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=21.11 E-value=58 Score=20.10 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCC
Q psy10209 57 EQTLREFFKAIQDGK 71 (106)
Q Consensus 57 ~~tlrEFf~ai~~gk 71 (106)
..|+++||.|+.+|.
T Consensus 3 ~~~v~~~~~a~~~gD 17 (112)
T 3f14_A 3 ETTHYSIAQHFSSGD 17 (112)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCC
Confidence 358999999998764
No 13
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.21 E-value=26 Score=22.59 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=25.3
Q ss_pred ccchhHHHHHHhhhccCCCccccCCCCCccHHHHHH
Q psy10209 22 SGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIE 57 (106)
Q Consensus 22 ~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~ 57 (106)
..+++|=..|-.-|+.--+=. ||++|+++.+
T Consensus 23 ~~~~~Ig~~LR~~Yd~vv~E~-----VPDrFldLL~ 53 (62)
T 2lfw_B 23 SKDRDMGAALRSAYQKTIEEQ-----VPDEMLDLLN 53 (62)
T ss_dssp SSSTTHHHHHHHHHHTTTSSC-----CCCTTGGGST
T ss_pred ChHHHHHHHHHHHHHHHhccC-----CCHHHHHHHH
Confidence 457889999999999877766 9999998653
Done!