RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10209
         (106 letters)



>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain,
           4-helix bundle, transcription; HET: MSE; 2.05A
           {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
          Length = 152

 Score =  157 bits (397), Expect = 5e-51
 Identities = 75/99 (75%), Positives = 84/99 (84%), Gaps = 5/99 (5%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+E TL
Sbjct: 59  MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTL 113

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSP 99
           REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSP
Sbjct: 114 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSP 152


>2lmd_A Prospero homeobox protein 1; structural genomics, northeast
           structural genomics consortiu PSI-biology, protein
           structure initiative, transcription; NMR {Homo sapiens}
          Length = 174

 Score =  157 bits (398), Expect = 7e-51
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct: 72  MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 126

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
           REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct: 127 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 171


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 11/54 (20%)

Query: 29 RVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQD------GKDQEPS 76
          R L L +     +E     VPT   F+  Q L+E F  I          D EP+
Sbjct: 7  RPLTLSHG---SLEHVLL-VPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPT 55



 Score = 35.8 bits (82), Expect = 0.001
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPT-NFRFVIEQT 59
            M+ Y     ++ V +  D H     + Y    L    NN      P   T +F     + 
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFK---DTYGFSILDIVINN------PVNLTIHFGGEKGKR 1683

Query: 60   LRE-----FFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEY-FKSPNFLEQL 105
            +RE      F+ I DGK +         KI   +++    Y F+S      L
Sbjct: 1684 IRENYSAMIFETIVDGKLKT-------EKIFKEINEHSTSYTFRSEK--GLL 1726



 Score = 25.0 bits (54), Expect = 7.1
 Identities = 11/71 (15%), Positives = 16/71 (22%), Gaps = 17/71 (23%)

Query: 46  PQVPTNFRFVIEQTLREFFKAIQDGKD-----------------QEPSWKKSIYKIISRM 88
           P     F  V+   L EF     +G D                 +     K+        
Sbjct: 74  PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133

Query: 89  DDPVPEYFKSP 99
             P  +   S 
Sbjct: 134 KRPFDKKSNSA 144


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.34
 Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 4/20 (20%)

Query: 78 KKSIYKIISRM----DDPVP 93
          K+++ K+ + +    DD  P
Sbjct: 19 KQALKKLQASLKLYADDSAP 38


>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
           TLR2, PAM3CSK4, lipopeptide, innate immunity,
           cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
           {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
           2z7x_A*
          Length = 549

 Score = 27.8 bits (62), Expect = 0.79
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 29  RVLNLHYNRNNHIEVCGPQVPTNFRF--VIEQTLREFFKAIQDGKDQEPSWKKSIYKIIS 86
             L LH + +  +      + ++ R+  + +  L  F  +     +     KK  ++   
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 87  RMDDPVPEYFKSPNFLEQLE 106
             D+   E  K   ++ +L 
Sbjct: 235 LTDESFNELLKLLRYILELS 254


>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
           CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
           a.100.1.1 c.2.1.6
          Length = 478

 Score = 26.1 bits (58), Expect = 2.2
 Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 9/45 (20%)

Query: 60  LREFFKAIQDGKDQEPSWKKSIYKIISRMDDPVP------EYFKS 98
           +  F   I+ G     +++  +  I S+++  +P       Y  +
Sbjct: 396 MCAFQTEIRAG---LQNYRDMVALITSKLEVSIPVLSASLNYVTA 437


>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
           genomics, center for structural genomics of infectious
           DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
          Length = 663

 Score = 25.5 bits (57), Expect = 4.2
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 54  FVIEQTLREFFKAIQDGKDQEPSWKK--SIYK-------IISRMDDPVPEYFKS--PNFL 102
           F I Q + +++ A + G+  E +W+   +++K           +   +P   +S   +++
Sbjct: 286 FEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYI 345

Query: 103 EQL 105
              
Sbjct: 346 ASQ 348


>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
           inhibition, bromopyruvate, amino-acid biosynthesis; HET:
           FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
           3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
          Length = 644

 Score = 25.1 bits (55), Expect = 6.3
 Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 9/40 (22%)

Query: 52  FRFVIEQTL---------REFFKAIQDGKDQEPSWKKSIY 82
             ++++             EF + IQ   +        + 
Sbjct: 437 VAYIMKTDHGLSLPRRLQIEFSQVIQKIAEGTAGEGGEVS 476


>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
           protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
           b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
          Length = 397

 Score = 24.5 bits (54), Expect = 8.3
 Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 64  FKAIQDGKDQEPSWKKSIYKIISRMDDPVPE 94
             A++          KS+ K++  +D  +P 
Sbjct: 167 LCALEQ--RDPELGLKSVQKLLDAVDTYIPV 195


>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics; NMR {Homo sapiens} SCOP: a.118.9.1
          Length = 148

 Score = 24.5 bits (53), Expect = 8.3
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 27  IYRVLN-LHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKSIYKII 85
           +Y+ +  + Y      E    Q   N   V  QTL++F    +DGKDQ  + ++   +++
Sbjct: 78  VYKAMTLMEYLIKTGSERVSQQCKENMYAV--QTLKDFQYVDRDGKDQGVNVREKAKQLV 135

Query: 86  SRMDDP 91
           + + D 
Sbjct: 136 ALLRDE 141


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0732    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,666,728
Number of extensions: 85829
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 24
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)