RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10209
         (106 letters)



>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 152

 Score =  168 bits (426), Expect = 7e-56
 Identities = 75/99 (75%), Positives = 84/99 (84%), Gaps = 5/99 (5%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+E TL
Sbjct: 59  MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTL 113

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSP 99
           REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSP
Sbjct: 114 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSP 152


>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
           {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 24.0 bits (51), Expect = 5.4
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 54  FVIEQTLREFFKAIQDGKDQEPSWKK 79
           F I   +   + A + G+ +E +W +
Sbjct: 283 FEIPSEIYAQWDAKEAGQAKESAWNE 308


>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 23.5 bits (50), Expect = 6.5
 Identities = 4/32 (12%), Positives = 7/32 (21%), Gaps = 1/32 (3%)

Query: 48  VPTNFRFVIEQ-TLREFFKAIQDGKDQEPSWK 78
           V    R  +   T   +   +          K
Sbjct: 289 VNAQIRVNVLYSTPACYLWELNKANLSWSVKK 320


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,465
Number of extensions: 18084
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 7
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)