BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10210
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 151/320 (47%), Positives = 195/320 (60%), Gaps = 3/320 (0%)
Query: 90 FQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLV 149
+ IK LP G R EIL ++ A W+ G SGAVY+ + +
Sbjct: 58 LRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHI 117
Query: 150 DLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG---GPETCGCMTSGGTESI 206
L EV+ L S +NPLHPD++P K EAEV+ M A M G G CG +TSGGTES+
Sbjct: 118 AFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESL 177
Query: 207 MMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQ 266
++A K YRD+AR KGI+ PE V+P +AH AFDKAA YFG+K+ L + Y D+AA++
Sbjct: 178 LLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMR 237
Query: 267 SAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPL 326
AIT NTV++ GS P +P+G +D I IA L ++GI HVD CLGGF+ P+ GYP+
Sbjct: 238 EAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV 297
Query: 327 PPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYXXXXXXX 386
PPFDF L GVTS+S DTHKYG+ KG+SV+LYR H QYF+ +DWPGG Y
Sbjct: 298 PPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAG 357
Query: 387 XXXXXIIATCWAAMMYFGFE 406
+ AT WAAM+ G E
Sbjct: 358 SRPGALSATAWAAMLSLGEE 377
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/320 (47%), Positives = 194/320 (60%), Gaps = 3/320 (0%)
Query: 90 FQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLV 149
+ IK LP G R EIL ++ A W+ G SGAVY+ + +
Sbjct: 54 LRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHI 113
Query: 150 DLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG---GPETCGCMTSGGTESI 206
L EV+ L S +NPLHPD++P K EAEV+ M A M G G CG +TSGGTES+
Sbjct: 114 AFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESL 173
Query: 207 MMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQ 266
++A K YRD+AR KGI+ PE V+P +AH AFDKAA YFG+K+ L + Y D+AA++
Sbjct: 174 LLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMR 233
Query: 267 SAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPL 326
AIT NTV++ GS P P+G +D I IA L ++GI HVD CLGGF+ P+ GYP+
Sbjct: 234 EAITPNTVVVAGSAPGXPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV 293
Query: 327 PPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYXXXXXXX 386
PPFDF L GVTS+S DTHKYG+ KG+SV+LYR H QYF+ +DWPGG Y
Sbjct: 294 PPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAG 353
Query: 387 XXXXXIIATCWAAMMYFGFE 406
+ AT WAAM+ G E
Sbjct: 354 SRPGALSATAWAAMLSLGEE 373
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/320 (46%), Positives = 194/320 (60%), Gaps = 3/320 (0%)
Query: 90 FQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLV 149
+ IK LP G R EIL ++ A W+ G SGAVY+ + +
Sbjct: 58 LRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHI 117
Query: 150 DLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG---GPETCGCMTSGGTESI 206
L EV+ L S +NPLHPD++P K EAEV+ M A M G G CG +TSGGTES+
Sbjct: 118 AFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESL 177
Query: 207 MMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQ 266
++A K YRD+AR KGI+ PE V+P +AH AFDKAA YFG+K+ L + Y D+AA++
Sbjct: 178 LLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMR 237
Query: 267 SAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPL 326
AIT NTV++ GS P +P+G +D I IA L ++GI HVD CLGGF+ P+ GYP+
Sbjct: 238 EAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV 297
Query: 327 PPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYXXXXXXX 386
PPFDF L GVTS+S DTH YG+ KG+SV+LYR H QYF+ +DWPGG Y
Sbjct: 298 PPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAG 357
Query: 387 XXXXXIIATCWAAMMYFGFE 406
+ AT WAAM+ G E
Sbjct: 358 SRPGALSATAWAAMLSLGEE 377
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/320 (46%), Positives = 194/320 (60%), Gaps = 3/320 (0%)
Query: 90 FQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLV 149
+ IK LP G R EIL ++ A W+ G SGAVY+ + +
Sbjct: 54 LRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHI 113
Query: 150 DLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG---GPETCGCMTSGGTESI 206
L EV+ L S +NPLHPD++P K EAEV+ M A M G G CG +TSGGTES+
Sbjct: 114 AFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESL 173
Query: 207 MMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQ 266
++A K YRD+AR KGI+ PE V+P +AH AFDKAA YFG+K+ L + Y D+AA++
Sbjct: 174 LLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMR 233
Query: 267 SAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPL 326
AIT NTV++ GS P +P+G +D I IA L ++GI HVD CLGGF+ P+ GYP+
Sbjct: 234 EAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV 293
Query: 327 PPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYXXXXXXX 386
PPFDF L GVTS+S DTH YG+ KG+SV+LYR H QYF+ +DWPGG Y
Sbjct: 294 PPFDFRLEGVTSVSADTHAYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAG 353
Query: 387 XXXXXIIATCWAAMMYFGFE 406
+ AT WAAM+ G E
Sbjct: 354 SRPGALSATAWAAMLSLGEE 373
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/320 (46%), Positives = 194/320 (60%), Gaps = 3/320 (0%)
Query: 90 FQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLV 149
+ IK LP G R EIL ++ A W+ G SGAVY+ + +
Sbjct: 54 LRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHI 113
Query: 150 DLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG---GPETCGCMTSGGTESI 206
L EV+ L S +NPLHPD++P K EAEV+ M A M G G CG +TSGGTES+
Sbjct: 114 AFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESL 173
Query: 207 MMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQ 266
++A K YRD+AR KGI+ PE V+P +AH AFDKAA YFG+K+ L + Y D+AA++
Sbjct: 174 LLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMR 233
Query: 267 SAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPL 326
AIT NTV++ GS P +P+G +D I IA L ++GI HVD CLGGF+ P+ GYP+
Sbjct: 234 EAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV 293
Query: 327 PPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYXXXXXXX 386
PPFDF L GVTS+S DTH YG+ KG+SV+LYR H QYF+ +DWPGG Y
Sbjct: 294 PPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAG 353
Query: 387 XXXXXIIATCWAAMMYFGFE 406
+ AT WAAM+ G E
Sbjct: 354 SRPGALSATAWAAMLSLGEE 373
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 222/366 (60%), Gaps = 10/366 (2%)
Query: 73 PAVRKKLEEETGKVAKLFQDDIKQNNAGLEYFLELPSQGRNRLEILELVS--NYLARGHY 130
P +R +E+E KV + +D++ ++++ L F +LPS G + +++E ++ N L H
Sbjct: 4 PFLRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIP-HT 62
Query: 131 DWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG 190
WK G+VSGAVY+ DL+ L T + N LHPD+FP V KME+EV+ M RMFN
Sbjct: 63 QWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNA 122
Query: 191 GPETCGCMTSGGT-ESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKV 249
+T T+ G ES+++AC + + YA +GI+ PEI+ P TAH FDKAA YFGMK+
Sbjct: 123 PSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKL 182
Query: 250 KHIRLT-SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVD 308
+H+ L ++Y VDL ++ I NTV+LVGS PNFP+G DDI + K+ +KY +P+HVD
Sbjct: 183 RHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVD 242
Query: 309 CCLGGFLAPFMSAAGYP-LPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQ 367
CLG F+ FM AGY LP DF +PGVTSIS DTHKYGF PKGSSV++YR+ + Q
Sbjct: 243 SCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQ 302
Query: 368 YFVTSDWPGGNYXXXXXXXXXXXXIIATCWAAMMYFGFEAQVWIC---VRYHFNYKSCLQ 424
Y+V W GG Y I+ CWA M+ G + C V +K +Q
Sbjct: 303 YYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQ 362
Query: 425 -NLSDL 429
N+ DL
Sbjct: 363 ENIPDL 368
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 291 bits (744), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 221/366 (60%), Gaps = 10/366 (2%)
Query: 73 PAVRKKLEEETGKVAKLFQDDIKQNNAGLEYFLELPSQGRNRLEILELVS--NYLARGHY 130
P +R +E+E KV + +D++ ++++ L F +LPS G + +++E ++ N L H
Sbjct: 4 PFLRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIP-HT 62
Query: 131 DWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG 190
WK G+VSGAVY+ DL+ L T + N LHPD+FP V KME+EV+ M RMFN
Sbjct: 63 QWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNA 122
Query: 191 GPETCGCMTSGGT-ESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKV 249
+T T+ G ES+++AC + + YA +GI+ PEI+ P TAH FDKAA YFGMK+
Sbjct: 123 PSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKL 182
Query: 250 KHIRLT-SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVD 308
+H+ L ++Y VDL ++ I NTV+LVGS PNFP+G DDI + K+ +KY +P+HVD
Sbjct: 183 RHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVD 242
Query: 309 CCLGGFLAPFMSAAGYP-LPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQ 367
CLG F+ FM AGY LP DF +PGVTSIS DTH YGF PKGSSV++YR+ + Q
Sbjct: 243 SCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSDLRMHQ 302
Query: 368 YFVTSDWPGGNYXXXXXXXXXXXXIIATCWAAMMYFGFEAQVWIC---VRYHFNYKSCLQ 424
Y+V W GG Y I+ CWA M+ G + C V +K +Q
Sbjct: 303 YYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQ 362
Query: 425 -NLSDL 429
N+ DL
Sbjct: 363 ENIPDL 368
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 155/341 (45%), Gaps = 42/341 (12%)
Query: 109 SQGRNRLEILELVSNYLARGHYDWKHGRVSGA----VYYYQQDLVDLLTEVFGLTSYTNP 164
+G + EILE + Y + ++ G + G+ V + +VD+ E TN
Sbjct: 7 EKGVSEKEILEELKKYRSL-DLKYEDGNIFGSXCSNVLPITRKIVDIFLE-------TNL 58
Query: 165 LHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREE--KG 222
P +F G +E + + + + N + G + SGGTE+ + A + ++ RE+ KG
Sbjct: 59 GDPGLFKGTKLLEEKAVALLGSLLNN-KDAYGHIVSGGTEANLXALRCIKNIWREKRRKG 117
Query: 223 ISL---PEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTV-MLVG 278
+S P+I++P TAH +F+K ++ + + YT+D ++ A+ V ++G
Sbjct: 118 LSKNEHPKIIVPITAHFSFEKGREXXDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIG 177
Query: 279 SMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMS------AAGYPLPPFDFS 332
GT+D+I ++K+ ++ I +HVD GG + PF+ Y FDFS
Sbjct: 178 IAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNY---KFDFS 234
Query: 333 LPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYXXXXXXXXXXXXI 392
L GV SI++D HK G P S +L++D+ YK ++ D P
Sbjct: 235 L-GVDSITIDPHKXGHCPIPSGGILFKDIGYKR---YLDVDAPYLTETRQATILGTRVGF 290
Query: 393 IATC-WAAMMYFGFEAQVWICVRYHFNYKSCLQNLSDLWLY 432
C +A + Y G E Q I C +N L+LY
Sbjct: 291 GGACTYAVLRYLGREGQRKIV-------NECXENT--LYLY 322
>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|B Chain B, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|C Chain C, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|D Chain D, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|E Chain E, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|F Chain F, Crystal Structure Of Gad1 From Arabidopsis Thaliana
Length = 502
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 20/209 (9%)
Query: 168 DIFPGVCKMEAEVIKMCARMFNGGPE----TCGCMTSGGTESIMMACKAYR-----DYAR 218
D +P +++ + M A +FN E G T G +E+IM+A A++
Sbjct: 88 DEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147
Query: 219 EEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTV-DLAALQSAITGNTVMLV 277
E K + P IV ++K A YF +++K ++L+ Y V D + NT+ +
Sbjct: 148 EGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVA 207
Query: 278 GSMPNFPYGTMDDIGAIAKL-GEK-----YGIPVHVDCCLGGFLAPFMSAAGYPLPPFDF 331
+ + G +D+ + L EK + P+HVD GGF+APF+ YP +DF
Sbjct: 208 AILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDF 263
Query: 332 SLPGVTSISVDTHKYGFTPKGSSVVLYRD 360
LP V SI+V H YG G V++R+
Sbjct: 264 RLPLVKSINVSGHXYGLVYAGIGWVIWRN 292
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 27/244 (11%)
Query: 154 EVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG----GPETCGCMTSGGTESIMMA 209
++ L+ N + + +P ++ + M A +++ + G T G +E+ M+
Sbjct: 74 KLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLG 133
Query: 210 CKA--YRDYAREE---KGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYT-VDLA 263
A +R R E K P +V + K A Y+ ++++ I + +D
Sbjct: 134 GMAMKWRWRKRMEAAGKPTDKPNLVC-GPVQICWHKFARYWDVELREIPMRPGQLFMDPK 192
Query: 264 ALQSAITGNTVMLVGSMP-------NFPYGTMDDIGAIAKLGEKYGIPV--HVDCCLGGF 314
+ A NT+ +V + FP D A+ K GI + H+D GGF
Sbjct: 193 RMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD---ALDKFQADTGIDIDMHIDAASGGF 249
Query: 315 LAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDW 374
LAPF++ P +DF LP V SIS HK+G P G V++RD + + D+
Sbjct: 250 LAPFVA----PDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 375 PGGN 378
GG
Sbjct: 306 LGGQ 309
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 27/244 (11%)
Query: 154 EVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG----GPETCGCMTSGGTESIMMA 209
++ L+ N + + +P ++ + M A +++ + G T G +E+ M+
Sbjct: 74 KLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLG 133
Query: 210 CKA--YRDYAREE---KGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLT-SSYTVDLA 263
A +R R E K P +V + K A Y+ ++++ I + +D
Sbjct: 134 GMAMKWRWRKRMEAAGKPTDKPNLVC-GPVQICWHKFARYWDVELREIPMRPGQLFMDPK 192
Query: 264 ALQSAITGNTVMLVGSMP-------NFPYGTMDDIGAIAKLGEKYGIPV--HVDCCLGGF 314
+ A NT+ +V + FP D A+ K GI + H+D GGF
Sbjct: 193 RMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD---ALDKFQADTGIDIDMHIDAASGGF 249
Query: 315 LAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDW 374
LAPF++ P +DF LP V SIS HK+G P G V++RD + + D+
Sbjct: 250 LAPFVA----PDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 375 PGGN 378
GG
Sbjct: 306 LGGQ 309
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 27/244 (11%)
Query: 154 EVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNG----GPETCGCMTSGGTESIMMA 209
++ L+ N + + +P ++ + M A +++ + G T G +E+ M+
Sbjct: 60 KLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLG 119
Query: 210 CKA--YRDYAREE---KGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYT-VDLA 263
A +R R E K P +V + K A Y+ ++++ I + +D
Sbjct: 120 GMAMKWRWRKRMEAAGKPTDKPNLVC-GPVQICWHKFARYWDVELREIPMRPGQLFMDPK 178
Query: 264 ALQSAITGNTVMLVGSMP-------NFPYGTMDDIGAIAKLGEKYGIPV--HVDCCLGGF 314
+ A NT+ +V + FP D A+ K GI + H+D GGF
Sbjct: 179 RMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD---ALDKFQADTGIDIDMHIDAASGGF 235
Query: 315 LAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDW 374
LAPF++ P +DF LP V SIS HK+G P G V++RD + + D+
Sbjct: 236 LAPFVA----PDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 291
Query: 375 PGGN 378
GG
Sbjct: 292 LGGQ 295
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 33/209 (15%)
Query: 176 MEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREE------KGISLPE-- 227
+E +V+ ++ + G TSGGT+S RD+ ++ + + LP+
Sbjct: 141 VEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQKLGLPDYA 200
Query: 228 ----IVLPTTAHPAFDKAANYFGM---KVKHIRLTSSYTVDLAALQSAITGNTV------ 274
IV +H K+A++ G+ V + + T D+ L I
Sbjct: 201 DKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPF 260
Query: 275 MLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLP 334
+VG+ +G +DD+ IA K+ HVD GG L L L
Sbjct: 261 AIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGGALI---------LSSHKSRLK 311
Query: 335 GVT---SISVDTHKYGFTPKGSSVVLYRD 360
GV SISVD HK + +L D
Sbjct: 312 GVERAHSISVDFHKLFYQTISCGALLVND 340
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 48/239 (20%)
Query: 105 LELPSQGRNRLEILE----LVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTS 160
LEL SQG ++ +ILE ++ + GH + + SG + + +TE +
Sbjct: 80 LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRI--ITESLNTSQ 137
Query: 161 YTNPLHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAR-- 218
YT +I P ME EV++ R G G GG+ S M A R Y R
Sbjct: 138 YTY----EIAPVFVLMEEEVLRKL-RALVGWSSGDGIFCPGGSISNMYAVNLAR-YQRYP 191
Query: 219 --EEKGI-SLPEIVLPTT--AHPAFDKAANYFGMKVKHIRLTSS------------YTVD 261
+++G+ +LP + L T+ H + K A + G+ +R+ + +
Sbjct: 192 DCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIG 251
Query: 262 LAA-------LQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGG 313
+A L SA +G TV+ G D + AIA + +++G+ +HVD GG
Sbjct: 252 MAEAEGAVPFLVSATSGTTVL----------GAFDPLEAIADVCQRHGLWLHVDAAWGG 300
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 107/283 (37%), Gaps = 39/283 (13%)
Query: 102 EYFLELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQ-----DLVDLLTEVF 156
EY EL Q +N EIL L K+ +G Y+ Q D+V L +
Sbjct: 57 EYNWELADQPQNLEEILMHCQTTL-------KYAIKTGHPRYFNQLSTGLDMVGLAADWL 109
Query: 157 GLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFN-GGPETCGCMTSGGTESIMMACKAYR- 214
T+ TN +I P +E +K + G G + GG S M A R
Sbjct: 110 TSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWPGGSGDGIFSPGGAISNMYAMMIARF 169
Query: 215 ---DYAREEKGISLPEIVLPTTAHPAFD--KAANYFGMKVKHIRLTSS--------YTVD 261
+E+ +LP ++ T+ H F K A G+ + L ++
Sbjct: 170 KMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLE 229
Query: 262 LAALQSAITGNTVMLVGSMPNFP-YGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMS 320
L++ G LV + YG D + A+A + +KY I +HVD GG L MS
Sbjct: 230 RRILEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGL--LMS 287
Query: 321 AAGYPLPPFDFSLPGV---TSISVDTHKYGFTPKGSSVVLYRD 360
+ L GV S++ + H P S +L R+
Sbjct: 288 RK------HKWKLSGVERANSVTWNPHXMMGVPLQCSALLVRE 324
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 245 FGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIP 304
FG+K++H+ + DL AL++A+T T ++ P P M DI +AK+ K+G
Sbjct: 128 FGVKLRHVDM-----ADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGAT 182
Query: 305 VHVD 308
V VD
Sbjct: 183 VVVD 186
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 245 FGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIP 304
FG+K++H+ + DL AL++A+T T ++ P P M DI +AK+ K+G
Sbjct: 128 FGVKLRHVDM-----ADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGAT 182
Query: 305 VHVD 308
V VD
Sbjct: 183 VVVD 186
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 245 FGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIP 304
FG+K++H+ + DL AL++A+T T ++ P P M DI +AK+ K+G
Sbjct: 128 FGVKLRHVDM-----ADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGAT 182
Query: 305 VHVD 308
V VD
Sbjct: 183 VVVD 186
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 21/204 (10%)
Query: 133 KHGRVSGAVYYYQQ-----DLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARM 187
K+G +G ++ Q D++ L E T+ TN +I P ME +K +
Sbjct: 88 KYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREI 147
Query: 188 FN-GGPETCGCMTSGGT----ESIMMACKAYRDYAREEKGISLPEIVLPTT--AHPAFDK 240
+ G + GG SIM A Y + + ++P++VL T+ +H + K
Sbjct: 148 VGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK 207
Query: 241 AANYFGMKVKHIRLTSSYT------VDLAA--LQSAITGNTVMLVGSMPNFP-YGTMDDI 291
A G ++ L D A L++ G V + YG D I
Sbjct: 208 AGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPI 267
Query: 292 GAIAKLGEKYGIPVHVDCCLGGFL 315
IA + EKY + +HVD GG L
Sbjct: 268 QEIADICEKYNLWLHVDAAWGGGL 291
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 21/204 (10%)
Query: 133 KHGRVSGAVYYYQQ-----DLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARM 187
K+G +G ++ Q D++ L E T+ TN +I P ME +K +
Sbjct: 85 KYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREI 144
Query: 188 FN-GGPETCGCMTSGGT----ESIMMACKAYRDYAREEKGISLPEIVLPTT--AHPAFDK 240
+ G + GG SIM A Y + + ++P++VL T+ +H + K
Sbjct: 145 VGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK 204
Query: 241 AANYFGMKVKHIRLTSSYT------VDLAA--LQSAITGNTVMLVGSMPNFP-YGTMDDI 291
A G ++ L D A L++ G V + YG D I
Sbjct: 205 AGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPI 264
Query: 292 GAIAKLGEKYGIPVHVDCCLGGFL 315
IA + EKY + +HVD GG L
Sbjct: 265 QEIADICEKYNLWLHVDAAWGGGL 288
>pdb|1B9H|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
Synthase
Length = 388
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 227 EIVLPTTAHPAFDKAANYFGMKVKHIRL-TSSYTVDLAALQSAITGNTVMLVGSMPNFPY 285
E+++P + +AA G + + ++Y +D A+ +A+T T ++ MP
Sbjct: 80 EVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVI---MPVHMA 136
Query: 286 GTMDDIGAIAKLGEKYGIPVHVDCC 310
G M D+ A+AK+ G+P+ D
Sbjct: 137 GLMADMDALAKISADTGVPLLQDAA 161
>pdb|3NYU|A Chain A, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|B Chain B, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|C Chain C, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|D Chain D, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
Length = 367
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 227 EIVLPTTAHPAFDKAANYFGMKVKHIRLT-SSYTVDLAALQSAITGNTVMLVGSMPNFPY 285
E++ P + A + G K ++ + +Y +D L++AIT T ++ P Y
Sbjct: 77 EVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLY 133
Query: 286 GTMDDIGAIAKLGEKYGIPVHVDCC 310
G D AI + KYGIPV D
Sbjct: 134 GQCADFDAINAIASKYGIPVIEDAA 158
>pdb|3NYS|A Chain A, X-Ray Structure Of The K185a Mutant Of Wbpe (Wlbe) From
Pseudomonas Aeruginosa In Complex With Plp At 1.45
Angstrom Resolution
pdb|3NYT|A Chain A, X-Ray Crystal Structure Of The Wlbe (Wpbe)
Aminotransferase From Pseudomonas Aeruginosa, Mutation
K185a, In Complex With The Plp External Aldimine Adduct
With Udp-3-Amino-2-N-Acetyl-Glucuronic Acid, At 1.3
Angstrom Resolution
Length = 367
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 227 EIVLPTTAHPAFDKAANYFGMKVKHIRLT-SSYTVDLAALQSAITGNTVMLVGSMPNFPY 285
E++ P + A + G K ++ + +Y +D L++AIT T ++ P Y
Sbjct: 77 EVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLY 133
Query: 286 GTMDDIGAIAKLGEKYGIPVHVDCC 310
G D AI + KYGIPV D
Sbjct: 134 GQCADFDAINAIASKYGIPVIEDAA 158
>pdb|3NU7|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Cofactor Pmp
pdb|3NU7|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Cofactor Pmp
pdb|3NUB|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With Product
As The External Aldimine
pdb|3NUB|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With Product
As The External Aldimine
Length = 359
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 227 EIVLPTTAHPAFDKAANYFGMKVKHIRLT-SSYTVDLAALQSAITGNTVMLVGSMPNFPY 285
E++ P + A + G K ++ + +Y +D L++AIT T ++ P Y
Sbjct: 77 EVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLY 133
Query: 286 GTMDDIGAIAKLGEKYGIPVHVDCC 310
G D AI + KYGIPV D
Sbjct: 134 GQCADFDAINAIASKYGIPVIEDAA 158
>pdb|1B9I|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
Synthase
Length = 388
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 227 EIVLPTTAHPAFDKAANYFGMKVKHIRL-TSSYTVDLAALQSAITGNTVMLVGSMPNFPY 285
E+++P + +AA G + + ++Y +D A+ +A+T T ++ MP
Sbjct: 80 EVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVI---MPVHMA 136
Query: 286 GTMDDIGAIAKLGEKYGIPVHVDCC 310
G M D+ A+AK+ G+P+ D
Sbjct: 137 GLMADMDALAKISADTGVPLLQDAA 161
>pdb|3NU8|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Internal Aldimine
pdb|3NU8|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Internal Aldimine
Length = 359
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 227 EIVLPTTAHPAFDKAANYFGMKVKHIRLT-SSYTVDLAALQSAITGNTVMLVGSMPNFPY 285
E++ P + A + G K ++ + +Y +D L++AIT T ++ P Y
Sbjct: 77 EVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLY 133
Query: 286 GTMDDIGAIAKLGEKYGIPVHVDCC 310
G D AI + KYGIPV D
Sbjct: 134 GQCADFDAINAIASKYGIPVIEDAA 158
>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase
Length = 402
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 198 MTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRL--T 255
+TSG +++I + + + I++P + A G++VK L
Sbjct: 100 LTSGCSQAIELCLAVLANPGQN--------ILIPRPGFSLYRTLAESMGIEVKLYNLLPE 151
Query: 256 SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPVHVD 308
S+ +DL L+S I T LV + P+ P G++ + I + E+ +P+ D
Sbjct: 152 KSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILAD 207
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 32/176 (18%)
Query: 193 ETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPT-----------TAHPAFDKA 241
E G + +E+ ++A A R + PE+ AH + ++A
Sbjct: 139 EGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERA 198
Query: 242 ANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM--------DDIGA 293
G+K+K I ++ + +ALQ A+ + G +P F T+ D++
Sbjct: 199 GLIGGVKLKAIPSDGNFAMRASALQEALERDKA--AGLIPFFMVATLGTTTCCSFDNLLE 256
Query: 294 IAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVT---SISVDTHKY 346
+ + K I +HVD G + + P F L GV S + + HK+
Sbjct: 257 VGPICNKEDIWLHVDAAYAG--------SAFICPEFRHLLNGVEFADSFNFNPHKW 304
>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
Length = 376
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 228 IVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGT 287
++LP A+P++ AA ++ I L DL A+ + +L+ + PN P G
Sbjct: 114 LLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGA 173
Query: 288 MDDIGAIAK---LGEKYGI 303
+ D G + L K+G+
Sbjct: 174 VADWGYFEEALGLARKHGL 192
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 179 EVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYR-DYAREEKGISLPEIVLPTTAHPA 237
E + A++ NGG T TSG TE+ +A Y AR+ K I + + + +PA
Sbjct: 47 EAREKVAKLVNGGGGTV-VFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPA 105
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
K G +V++I + VD++ + + +T+++ N GT+ + I+++
Sbjct: 106 --KFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEV 163
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 110 QGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQ 145
+G +LEIL+L N LAR WKH G +Y+ +
Sbjct: 511 EGLEKLEILDLQHNNLARL---WKHANPGGPIYFLK 543
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 314 FLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGF 348
FLAPF+S G PL FS PG + +++ GF
Sbjct: 117 FLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGF 151
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 110 QGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQ 145
+G +LEIL+L N LAR WKH G +Y+ +
Sbjct: 506 EGLEKLEILDLQHNNLARL---WKHANPGGPIYFLK 538
>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
pdb|3NRA|B Chain B, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
Length = 407
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 260 VDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPVHVD 308
+DL L+ A + + S PN P G + ++IG IA L +YG V D
Sbjct: 167 LDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIAD 218
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 23/146 (15%)
Query: 193 ETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPT-----------TAHPAFDKA 241
E G + +E+ ++A A R + PE+ AH + ++A
Sbjct: 139 EGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERA 198
Query: 242 ANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM--------DDIGA 293
G+K+K I ++ + +ALQ A+ + G +P F T+ D++
Sbjct: 199 GLIGGVKLKAIPSDGNFAMRASALQEALERDKA--AGLIPFFMVATLGTTTCCSFDNLLE 256
Query: 294 IAKLGEKYGIPVHVDCCLGG--FLAP 317
+ + K I +HVD G F+ P
Sbjct: 257 VGPICNKEDIWLHVDAAYAGSAFICP 282
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 110 QGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQ 145
+G +LEIL+L N LAR WKH G +Y+ +
Sbjct: 501 EGLEKLEILDLQHNNLARL---WKHANPGGPIYFLK 533
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 279 SMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPF 318
S P F + T + IGAI ++ +P+ VD + FL F
Sbjct: 611 SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 279 SMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPF 318
S P F + T + IGAI ++ +P+ VD + FL F
Sbjct: 611 SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 18/119 (15%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSY 258
TS GTE + K + D +I + H + NY +K I + +
Sbjct: 77 TSSGTEGNNLIMKNFYD----------GDIFISAIEHLSIYNHINY-APNIKVISVNTQG 125
Query: 259 TVDLAAL-----QSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLG 312
VDL L QS + V ++ M N G + DI I K+ +KY H D G
Sbjct: 126 LVDLEHLEELLAQSNTSKKLVSII--MANNESGVLQDIAEIGKITKKYEAKFHSDLVQG 182
>pdb|2PW0|A Chain A, Crystal Structure Of Trans-Aconitate Bound To
Methylaconitate Isomerase Prpf From Shewanella
Oneidensis
pdb|2PW0|B Chain B, Crystal Structure Of Trans-Aconitate Bound To
Methylaconitate Isomerase Prpf From Shewanella
Oneidensis
Length = 397
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 81 EETGKVAKLFQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGH 129
E+ G QDDI +NA L F + + G R+ +++ + +R H
Sbjct: 230 EDLGYTGTELQDDINSDNAALAKFETIRAHGALRMGLIKHIDEAASRQH 278
>pdb|2Z67|A Chain A, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|B Chain B, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|C Chain C, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|D Chain D, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
Length = 456
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 217 AREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLT---SSYTVDLAALQSAIT--- 270
AR++ G ++ ++ P +H + KA ++ G + + V + +++AI
Sbjct: 170 ARKKYGSNV--VIYPYASHKSPIKAVSFVGXNXRLVETVLDGDRVYVPVEDIENAIKKEI 227
Query: 271 --GNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIP 304
GN ++ ++ FP DDI IAK+ E Y IP
Sbjct: 228 ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIP 263
>pdb|3HRD|D Chain D, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|H Chain H, Crystal Structure Of Nicotinate Dehydrogenase
Length = 160
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 134 HGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNGGPE 193
+G V + L+DLL E FGLTS + G C C +FNG P
Sbjct: 11 NGEARSIVTEPNKRLLDLLREDFGLTS----VKEGCSEGECGA-------CTVIFNGDPV 59
Query: 194 TCGCMTSG 201
T CM +G
Sbjct: 60 TTCCMLAG 67
>pdb|2PVZ|A Chain A, Crystal Structure Of Methylaconitate Isomerase Prpf From
Shewanella Oneidensis
pdb|2PVZ|B Chain B, Crystal Structure Of Methylaconitate Isomerase Prpf From
Shewanella Oneidensis
Length = 397
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 81 EETGKVAKLFQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGH 129
E+ G QDDI +NA L F + + G R+ +++ + +R H
Sbjct: 230 EDLGYTGTELQDDINSDNAALAKFETIRAHGALRMGLIKHIDEAASRQH 278
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 261 DLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFM 319
D AA ++AI +T M+ P P + DI AIA + K+G+ VD F +P +
Sbjct: 141 DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNT---FASPML 196
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 266 QSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVD---------CCLGGFLA 316
++ G V+ + + P+ YG + D+ IAK+ +Y +P+ V+ L A
Sbjct: 141 ETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGA 200
Query: 317 PFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQ 367
F+ +G+ S+ I V G + + +VL R KYK+ +
Sbjct: 201 DFIVGSGHK------SMAASGPIGV----MGMKEEWAEIVLRRSEKYKNKE 241
>pdb|1MDO|A Chain A, Crystal Structure Of Arnb Aminotransferase With Pyridomine
5' Phosphate
Length = 393
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 265 LQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+++AIT T ++ P G D+ AI LGE+YGIPV D
Sbjct: 120 IEAAITPQTKAII---PVHYAGAPADLDAIYALGERYGIPVIEDAA 162
>pdb|1MDX|A Chain A, Crystal Structure Of Arnb Transferase With Pyridoxal 5'
Phosphate
pdb|1MDZ|A Chain A, Crystal Structure Of Arnb Aminotransferase With
Cycloserine And Pyridoxal 5' Phosphate
Length = 393
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 265 LQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+++AIT T ++ P G D+ AI LGE+YGIPV D
Sbjct: 120 IEAAITPQTKAII---PVHYAGAPADLDAIYALGERYGIPVIEDAA 162
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 234 AHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM----- 288
AH + ++A G+K+K I + + +ALQ A+ + G +P F T+
Sbjct: 191 AHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKA--AGLIPFFVVATLGTTSC 248
Query: 289 ---DDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVT---SISVD 342
D++ + + + I +HVD G + + P F L GV S + +
Sbjct: 249 CSFDNLLEVGPICHEEDIWLHVDAAYAG--------SAFICPEFRHLLNGVEFADSFNFN 300
Query: 343 THKY 346
HK+
Sbjct: 301 PHKW 304
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 27/169 (15%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYF---GMKVKHIRLT 255
TS TESI K + + K I+ H A + Y G KVK++ +
Sbjct: 67 TSCATESINWILKTVAETFEKRKRT----IITTPIEHKAVLETXKYLSXKGFKVKYVPVD 122
Query: 256 SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPVHVDCC-- 310
S V L L+ + +T ++ N GT+ +D+ I K K + VHVD
Sbjct: 123 SRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETL-VHVDAVQT 181
Query: 311 LGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYR 359
+G PF V S HK+ PKG + R
Sbjct: 182 IGKI-------------PFSLEKLEVDYASFSAHKF-HGPKGVGITYIR 216
>pdb|3TMG|A Chain A, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|B Chain B, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|C Chain C, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|D Chain D, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
Length = 280
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 239 DKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLV 277
++A NY+G+ ++ + SS +V LA+L S+I N +LV
Sbjct: 141 EQALNYYGLSKEYELVPSSESVMLASLDSSIKRNEWILV 179
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 27/169 (15%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMK---VKHIRLT 255
TS TESI K + + K I+ H A + Y MK VK++ +
Sbjct: 67 TSCATESINWILKTVAETFEKRKRT----IITTPIEHKAVLETMKYLSMKGFKVKYVPVD 122
Query: 256 SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPVHVDCC-- 310
S V L L+ + +T ++ N GT+ +D+ I K K + VHVD
Sbjct: 123 SRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETL-VHVDAVQT 181
Query: 311 LGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYR 359
+G PF V S HK+ PKG + R
Sbjct: 182 IGKI-------------PFSLEKLEVDYASFSAHKF-HGPKGVGITYIR 216
>pdb|3UWC|A Chain A, Structure Of An Aminotransferase (Degt-Dnrj-Eryc1-Strs
Family) From Coxiella Burnetii In Complex With Pmp
Length = 374
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 256 SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+ Y +D +++AIT T + P G + D A+AK+ +K+ + + D C
Sbjct: 109 NGYVIDPEKIEAAITDKTKAI---XPVHYTGNIADXPALAKIAKKHNLHIVEDAC 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,362,575
Number of Sequences: 62578
Number of extensions: 557907
Number of successful extensions: 1291
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 54
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)