RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10210
(435 letters)
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 414 bits (1065), Expect = e-142
Identities = 160/352 (45%), Positives = 213/352 (60%), Gaps = 7/352 (1%)
Query: 58 TGKLKKRVFKLARKIPAVRKKLEEETGKVAKLFQDDIKQNNAGLEYFLELPSQGRNRLEI 117
+ + + + + PA R + + + IK LP G R EI
Sbjct: 26 SLQDYCEIRGIQSQPPARRDPTMDWLASL----RSQIKPYRDRFPSHARLPRAGLPRAEI 81
Query: 118 LELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKME 177
L ++ A W+ G SGAVY+ + + L EV+ L S +NPLHPD++P K E
Sbjct: 82 LAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFE 141
Query: 178 AEVIKMCARMFNG---GPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTA 234
AEV+ M A M G G CG +TSGGTES+++A K YRD+AR KGI+ PE V+P +A
Sbjct: 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA 201
Query: 235 HPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAI 294
H AFDKAA YFG+K+ L + Y D+AA++ AIT NTV++ GS P +P+G +D I I
Sbjct: 202 HAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEI 261
Query: 295 AKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSS 354
A L ++GI HVD CLGGF+ P+ GYP+PPFDF L GVTS+S DTHKYG+ KG+S
Sbjct: 262 AALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTS 321
Query: 355 VVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFE 406
V+LYR H QYF+ +DWPGG Y SP+ +GSR G + AT WAAM+ G E
Sbjct: 322 VILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 410 bits (1054), Expect = e-140
Identities = 163/340 (47%), Positives = 222/340 (65%), Gaps = 4/340 (1%)
Query: 71 KIPAVRKKLEEETGKVAKLFQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYL-ARGH 129
P +R +E+E KV + +D++ ++++ L F +LPS G + +++E ++ H
Sbjct: 2 GSPFLRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPH 61
Query: 130 YDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFN 189
WK G+VSGAVY+ DL+ L T + N LHPD+FP V KME+EV+ M RMFN
Sbjct: 62 TQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFN 121
Query: 190 GGPET-CGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMK 248
+T CG TSGGTES+++AC + + YA +GI+ PEI+ P TAH FDKAA YFGMK
Sbjct: 122 APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMK 181
Query: 249 VKHIRLTS-SYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHV 307
++H+ L +Y VDL ++ I NTV+LVGS PNFP+G DDI + K+ +KY +P+HV
Sbjct: 182 LRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHV 241
Query: 308 DCCLGGFLAPFMSAAGYP-LPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHC 366
D CLG F+ FM AGY LP DF +PGVTSIS DTHKYGF PKGSSV++YR+ +
Sbjct: 242 DSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMH 301
Query: 367 QYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFE 406
QY+V W GG YGSP+++GSR G I+ CWA M+ G
Sbjct: 302 QYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGEN 341
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 384 bits (987), Expect = e-131
Identities = 79/309 (25%), Positives = 145/309 (46%), Gaps = 17/309 (5%)
Query: 107 LPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLH 166
+ +G + EILE + Y + ++ G + G++ ++ + ++ + TN
Sbjct: 5 MQEKGVSEKEILEELKKYRSL-DLKYEDGNIFGSMCSN---VLPITRKIVDIFLETNLGD 60
Query: 167 PDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREE-----K 221
P +F G +E + + + + N + G + SGGTE+ +MA + ++ RE+
Sbjct: 61 PGLFKGTKLLEEKAVALLGSLLNN-KDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119
Query: 222 GISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTV-MLVGSM 280
P+I++P TAH +F+K ++ + + YT+D ++ A+ V ++G
Sbjct: 120 KNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIA 179
Query: 281 PNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPL---PPFDFSLPGVT 337
GT+D+I ++K+ ++ I +HVD GG + PF+ FDFSL GV
Sbjct: 180 GTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVD 238
Query: 338 SISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCW 397
SI++D HK G P S +L++D+ YK ++ G+R G A +
Sbjct: 239 SITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTET--RQATILGTRVGFGGACTY 296
Query: 398 AAMMYFGFE 406
A + Y G E
Sbjct: 297 AVLRYLGRE 305
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 322 bits (827), Expect = e-106
Identities = 66/326 (20%), Positives = 137/326 (42%), Gaps = 25/326 (7%)
Query: 105 LELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNP 164
++P + +++++ L + + S + + ++ + N
Sbjct: 30 FKMPENSIPKEAAYQIINDELMLDG-NPRLNLASFVTTW----MEPECDKLIMSSINKNY 84
Query: 165 LHPDIFPGVCKMEAEVIKMCARMFNG----GPETCGCMTSGGTESIMMACKAYRDYAREE 220
+ D +P +++ + M A +FN G T G +E+IM+A A++ + +
Sbjct: 85 VDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144
Query: 221 -----KGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTS-SYTVDLAALQSAITGNTV 274
K + P IV ++K A YF +++K ++L+ Y +D + NT+
Sbjct: 145 RKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTI 204
Query: 275 MLVGSMPNFPYGTMDDIGAIAKLGEKYG------IPVHVDCCLGGFLAPFMSAAGYPLPP 328
+ + + G +D+ + L + P+HVD GGF+APF+ YP
Sbjct: 205 CVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFL----YPELE 260
Query: 329 FDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSR 388
+DF LP V SI+V HKYG G V++R+ + + ++ G + + +++ S+
Sbjct: 261 WDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSK 320
Query: 389 SGGIIATCWAAMMYFGFEAQVWICVR 414
+ + ++ G E +
Sbjct: 321 GSSQVIAQYYQLIRLGHEGYRNVMEN 346
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 318 bits (817), Expect = e-105
Identities = 61/316 (19%), Positives = 125/316 (39%), Gaps = 24/316 (7%)
Query: 106 ELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPL 165
P +++++ L + + + + + + ++ L+ N +
Sbjct: 17 RFPLHEMRDDVAFQIINDELYL-DGNARQNLATFCQTWDD----ENVHKLMDLSINKNWI 71
Query: 166 HPDIFPGVCKMEAEVIKMCARMFNG----GPETCGCMTSGGTESIMMACKAYRDYARE-- 219
+ +P ++ + M A +++ + G T G +E+ M+ A + R+
Sbjct: 72 DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131
Query: 220 --EKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTS-SYTVDLAALQSAITGNTVML 276
+ ++ + K A Y+ ++++ I + +D + A NT+ +
Sbjct: 132 EAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGV 191
Query: 277 VGSMPNFPYGTMDDIGAIAKLGEK------YGIPVHVDCCLGGFLAPFMSAAGYPLPPFD 330
V + G + + +K I +H+D GGFLAPF+ P +D
Sbjct: 192 VPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV----APDIVWD 247
Query: 331 FSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSG 390
F LP V SIS HK+G P G V++RD + + D+ GG G+ +++ SR
Sbjct: 248 FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA 307
Query: 391 GIIATCWAAMMYFGFE 406
G + + + G E
Sbjct: 308 GQVIAQYYEFLRLGRE 323
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 275 bits (705), Expect = 1e-88
Identities = 55/349 (15%), Positives = 113/349 (32%), Gaps = 45/349 (12%)
Query: 75 VRKKLEEETGKVAKLFQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGHYDWKH 134
+ + + K +L ++ + + ++P G + +I +
Sbjct: 26 IEGLIPKNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPK 85
Query: 135 --------GRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCAR 186
R ++ ++L G + P G M A K+
Sbjct: 86 SVRIGEREARTYSKIH---EELSSGFCHGIGRSGNLVDPQPKA-SGASIMYALTNKILES 141
Query: 187 MFNG-GPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYF 245
F G T T + C + ++ P +H + KA ++
Sbjct: 142 FFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSN-----VVIYPYASHKSPIKAVSFV 196
Query: 246 GMKVKHIRL---TSSYTVDLAALQSAIT-----GNTVMLVGSMPNFPYGTMDDIGAIAKL 297
GM ++ + V + +++AI GN ++ ++ FP DDI IAK+
Sbjct: 197 GMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKI 256
Query: 298 GEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVL 357
E Y IP ++ ++ F + + V S + K TP G +V
Sbjct: 257 CENYDIPHIINGAYAIQNNYYL---EKLKKAFKYRVDAVVS---SSDKNLLTPIGGGLVY 310
Query: 358 YRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFE 406
D ++ ++ +PG +P V+ +++ G +
Sbjct: 311 STDAEFIK---EISLSYPGRASATPVVN----------TLVSLLSMGSK 346
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 113 bits (286), Expect = 9e-28
Identities = 60/351 (17%), Positives = 112/351 (31%), Gaps = 65/351 (18%)
Query: 44 ESLFSRDPFDTDSLTGKLKKRVFKLARKIPAVRKKLEEET-GKVAKLFQDDIKQNNAGLE 102
+ + + + V +
Sbjct: 21 KHFIHTGELGSAEFASVMSHTTSAMKSVFEQVNAPYSGMDPKALEDAINA---------- 70
Query: 103 YFLELPSQGRNRLEILELVSNYLARGHYDWKHGR----VSGAVYYYQQDLVDLLTEVFG- 157
++L ++ +++ V+ +A+ +H + + +
Sbjct: 71 --VDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAV-AAEAMIAALNQ 127
Query: 158 -LTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRD- 215
+ S+ D +E +V+ ++ + G TSGGT+S M RD
Sbjct: 128 SMDSW------DQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDW 181
Query: 216 YAREEKGISLPEIVLPTT-----------AHPAFDKAANYFGMKVKHIRL---TSSYTVD 261
A + G S+ ++ LP +H K+A++ G+ K + + T+D
Sbjct: 182 IADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMD 241
Query: 262 LAALQSAIT-----GNTVMLV----GSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLG 312
+ L I G + G+ +G +DD+ IA + K+ + +HVD G
Sbjct: 242 ITKLDEVIAQAKAEGLIPFAIVGTAGTT---DHGAIDDLDFIADMAVKHDMWMHVDGAYG 298
Query: 313 GFLAPFMSAAGYPLPPFDFSLPGV---TSISVDTHKYGFTPKGSSVVLYRD 360
G L L L GV SISVD HK + +L D
Sbjct: 299 GALI---------LSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVND 340
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 110 bits (275), Expect = 1e-26
Identities = 53/323 (16%), Positives = 101/323 (31%), Gaps = 59/323 (18%)
Query: 120 LVSNYLARGHYDWKHG-RVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEA 178
+ S +AR HY + HG SG D+ + + G +S N + +
Sbjct: 61 VASALVARRHYRFIHGIGRSG-------DISAVQPKAAG-SSLLNKI-------TNSLVL 105
Query: 179 EVIKMCARMFNGGPETCGC----MTSGGTESI-MMACKAYRDYAREEKGISLPEIVLPTT 233
VIK+ G C M +G + ++ + + R A+ I+ P
Sbjct: 106 NVIKLA-----GVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKY--------IIWPRI 152
Query: 234 AHPAFDKAANYFGMKVKHIRLT---SSYTVDLAALQSAI----TGNTVMLVGSMPNFPYG 286
+ K+ G + I DL A+++ I + + L + F
Sbjct: 153 DQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPR 212
Query: 287 TMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKY 346
D + +A + Y IP V+ G + M L + + + K
Sbjct: 213 VPDRLEELAVICANYDIPHVVNNAYGLQSSKCM-----HLIQQGARVGRIDAFVQSLDKN 267
Query: 347 GFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFE 406
P G +++ + + ++ +PG SPS+ ++ G
Sbjct: 268 FMVPVGGAIIAGFNEPFIQD---ISKMYPGRASASPSLD----------VLITLLSLGCS 314
Query: 407 AQVWICVRYHFNYKSCLQNLSDL 429
+ + L L
Sbjct: 315 GYRKLLKERKEMFVYLSTQLKKL 337
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 108 bits (271), Expect = 7e-26
Identities = 51/324 (15%), Positives = 105/324 (32%), Gaps = 61/324 (18%)
Query: 120 LVSNYLARGHYDWKHG-RVSGAVYYYQQDLVDLLTEVFG---LTSYTNPLHPDIF--PGV 173
+ S +AR HY + HG SG D+ + + G L TN L DI GV
Sbjct: 79 VASALVARRHYRFIHGIGRSG-------DISAVQPKAAGSSLLNKITNSLVLDIIKLAGV 131
Query: 174 CKMEAEVIKMCARMFNGGPETCGCMTSGGTESI-MMACKAYRDYAREEKGISLPEIVLPT 232
+ + A +G + ++ + + R A+ I+ P
Sbjct: 132 HTVANCFVVPMA--------------TGMSLTLCFLTLRHKRPKAKY--------IIWPR 169
Query: 233 TAHPAFDKAANYFGMK---VKHIRLTSSYTVDLAALQSAI---TGNTVMLVGSMPN-FPY 285
+ K+ G + ++++ DL A+++ + + ++ + S + F
Sbjct: 170 IDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAP 229
Query: 286 GTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHK 345
D + +A + Y IP V+ G + M L + + + K
Sbjct: 230 RVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMH-----LIQQGARVGRIDAFVQSLDK 284
Query: 346 YGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGF 405
P G +++ + + ++ +PG SPS+ ++ G
Sbjct: 285 NFMVPVGGAIIAGFNDSFIQE---ISKMYPGRASASPSLD----------VLITLLSLGS 331
Query: 406 EAQVWICVRYHFNYKSCLQNLSDL 429
+ + + L
Sbjct: 332 NGYKKLLKERKEMFSYLSNQIKKL 355
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 105 bits (264), Expect = 9e-25
Identities = 62/289 (21%), Positives = 107/289 (37%), Gaps = 41/289 (14%)
Query: 105 LELPSQGRNRLEILELVSNYLARGHYDWK---HGRVSGAVYYYQQDLVDLLTEVFGLTSY 161
LEL SQG ++ +ILE + ++ + + ++TE + Y
Sbjct: 80 LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHAL-AGRIITESLNTSQY 138
Query: 162 TNPLHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYA---- 217
T +I P ME EV++ + G G GG+ S M A R
Sbjct: 139 TY----EIAPVFVLMEEEVLRKLRALV-GWSSGDGIFCPGGSISNMYAVNLARYQRYPDC 193
Query: 218 REEKGISLPEIVLPTT--AHPAFDKAANYFGMKVKHIRL---TSSYTVDLAALQSAIT-- 270
++ +LP + L T+ H + K A + G+ +R+ + L+ I
Sbjct: 194 KQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMA 253
Query: 271 ---GNTVMLV----GSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAG 323
G LV G+ G D + AIA + +++G+ +HVD GG + +S
Sbjct: 254 EAEGAVPFLVSATSGTTV---LGAFDPLEAIADVCQRHGLWLHVDAAWGGSV--LLS--- 305
Query: 324 YPLPPFDFSLPGV---TSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYF 369
L G+ S++ + HK S +L +D +
Sbjct: 306 ---QTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCH 351
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 103 bits (258), Expect = 5e-24
Identities = 60/281 (21%), Positives = 100/281 (35%), Gaps = 35/281 (12%)
Query: 102 EYFLELPSQGRNRLEILELVSNYLARGHYDWK---HGRVSGAVYYYQQDLVDLLTEVFGL 158
+ LEL + +IL + L G ++S + + LT
Sbjct: 61 GFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGL-AGEWLTSTANT 119
Query: 159 TSYTNPLHPDIFPGVCKMEAEVIKMCARMFNGGPETC-GCMTSGGTESIMMACKAYRDYA 217
+T +I P ME +K + + G + GG S M + A R
Sbjct: 120 NMFTY----EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKY 175
Query: 218 ----REEKGISLPEIVLPTT--AHPAFDKAANYFGMKVKHIRL---TSSYTVDLAALQSA 268
+ + ++P++VL T+ +H + KA G ++ L + A ++
Sbjct: 176 FPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAK 235
Query: 269 IT-----GNTVMLV-GSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAA 322
I G V + YG D I IA + EKY + +HVD GG L MS
Sbjct: 236 ILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL--LMS-- 291
Query: 323 GYPLPPFDFSLPGV---TSISVDTHKYGFTPKGSSVVLYRD 360
L G+ S++ + HK S +L ++
Sbjct: 292 ----RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKE 328
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 100 bits (252), Expect = 3e-23
Identities = 47/287 (16%), Positives = 93/287 (32%), Gaps = 46/287 (16%)
Query: 107 LPSQGRNRLEILELVSNYLARGHYDWKHGR----VSGAVYYYQQDLVDLLTEVFGLTSYT 162
P + I + + G W+ + L D+L +
Sbjct: 51 APEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSL-LGDMLADAIN----C 105
Query: 163 NPLHPDIFPGVCKMEAEVIKMCARMF---------NGGPETCGCMTSGGTESIMMACKAY 213
P ++E V+ A+M + + G + S +ES ++A A
Sbjct: 106 LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAA 165
Query: 214 RDYAREEKGISLPEIVLPTT-----------AHPAFDKAANYFGMKVKHIRLTSSYTVDL 262
R E S P+ + AH + +KA +K+K + + ++++
Sbjct: 166 RKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRG 225
Query: 263 AALQSAIT-----GNTV-MLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLA 316
ALQ AI G + ++ D + + + + G+ +H+D G
Sbjct: 226 EALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTA- 284
Query: 317 PFMSAAGYPLPPFDFSLPGV---TSISVDTHKYGFTPKGSSVVLYRD 360
F+ P F L G+ S + + K+ + +D
Sbjct: 285 -FLC------PEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKD 324
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 98.6 bits (246), Expect = 1e-22
Identities = 45/286 (15%), Positives = 97/286 (33%), Gaps = 46/286 (16%)
Query: 107 LPSQGRNRLEILELVSNYLARGHYDWKHGR----VSGAVYYYQQDLVDLLTEVFGLTSYT 162
P + ++++ + + G W + A Y + D+L+
Sbjct: 46 APEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAI-VADMLSGAIA----C 100
Query: 163 NPLHPDIFPGVCKMEAEVIKMCARMFN--------GGPETCGCMTSGGTESIMMACKAYR 214
P ++E ++ +M G + G + +ES ++A +
Sbjct: 101 IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAK 160
Query: 215 DYAREEKGISLPE-----------IVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLA 263
+E PE AH + ++A G+K++ ++ + ++ + A
Sbjct: 161 AKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQ-SENHRMRGA 219
Query: 264 ALQSAIT-----GNT-VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAP 317
AL+ AI G V ++ D + +G K+ + +HVD G
Sbjct: 220 ALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSA-- 277
Query: 318 FMSAAGYPLPPFDFSLPGV---TSISVDTHKYGFTPKGSSVVLYRD 360
F+ P + + G+ S + + HK+ S + +D
Sbjct: 278 FIC------PEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKD 317
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 98.6 bits (246), Expect = 2e-22
Identities = 52/291 (17%), Positives = 93/291 (31%), Gaps = 51/291 (17%)
Query: 105 LELPSQGRNRLEILELVSNYLARGHYDWKHGR----VSGAVYYYQQDLVDLLTEVFGLTS 160
P + +IL+ V + G W A Y L D+L G
Sbjct: 44 ATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAM-LADMLCGAIGCIG 102
Query: 161 YTNPLHPDIFPGVCKMEAEVIKMCARMFN--------GGPETCGCMTSGGTESIMMACKA 212
++ P ++E ++ +M E G + +E+ ++A A
Sbjct: 103 FSW----AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLA 158
Query: 213 YRDYAREEKGISLPE-----------IVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVD 261
R + P AH + ++A G+K+K I + +
Sbjct: 159 ARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMR 218
Query: 262 LAALQSAIT-----GNTVMLV----GSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLG 312
+ALQ A+ G V G+ + D++ + + + I +HVD
Sbjct: 219 ASALQEALERDKAAGLIPFFVVATLGTTS---CCSFDNLLEVGPICHEEDIWLHVDAAYA 275
Query: 313 GFLAPFMSAAGYPLPPFDFSLPGV---TSISVDTHKYGFTPKGSSVVLYRD 360
G F+ P F L GV S + + HK+ S + +
Sbjct: 276 GSA--FIC------PEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKR 318
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 56.6 bits (137), Expect = 5e-09
Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 51/179 (28%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANY-----FGMKVKHIR 253
T+G E+ + +K +V+ H ++Y G+ + +
Sbjct: 75 TNGAREAKFAVMHSL-----AKKD---AWVVMDENCH-----YSSYVAAERAGLNIALVP 121
Query: 254 LT--SSYTVDLAALQSAITGNT------VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPV 305
T Y + I + L+ YG + D+ IAK+ +Y +P+
Sbjct: 122 KTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGN-YGNLPDVKKIAKVCSEYDVPL 180
Query: 306 HVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVD-----THK-YGFTPKGSSVVLY 358
V+ M P + I D HK G V+
Sbjct: 181 LVNGAYA---IGRM--------PVS-----LKEIGADFIVGSGHKSMA--ASGPIGVMG 221
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 55.6 bits (135), Expect = 1e-08
Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANY---FGMKVKHIRLT 255
TSG TES +A K ++ +++ I+ T H A G +V ++
Sbjct: 91 TSGATESDNLAIKGAANFYQKKGK----HIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ 146
Query: 256 SSYTVDLAALQSAITGNT----VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCL 311
+ +DL L++A+ +T +M V N G + DI AI ++ GI HVD
Sbjct: 147 RNGIIDLKELEAAMRDDTILVSIMHV----NNEIGVVQDIAAIGEMCRARGIIYHVDAT- 201
Query: 312 GGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHK-YGFTPKG 352
+ G P D S V +S HK YG PKG
Sbjct: 202 --------QSVGK--LPIDLSQLKVDLMSFSGHKIYG--PKG 231
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 55.9 bits (134), Expect = 2e-08
Identities = 43/237 (18%), Positives = 67/237 (28%), Gaps = 50/237 (21%)
Query: 150 DLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESI--- 206
D+ E L + L G E+E K AR+F G + + G + S
Sbjct: 189 DMGIERTSLG---SLLDHT---GAFG-ESE--KYAARVF--GADRSWSVVVGTSGSNRTI 237
Query: 207 MMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVK----------HIRLTS 256
M AC D +V+ H + ++ G K I
Sbjct: 238 MQACMTDND-----------VVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIY 286
Query: 257 SYTVDLAALQSAI----------TGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVH 306
+ LQ I V + + G + L EK +H
Sbjct: 287 PQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLH 345
Query: 307 VDCCLGGFLA---PFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRD 360
D G+ + P D + P V + THK +S + R+
Sbjct: 346 FDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFAT-HSTHKLLNALSQASYIHVRE 401
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 54.9 bits (133), Expect = 2e-08
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 198 MTSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKVKHIRLT 255
+TSG +++I + + P I++P + A G++VK L
Sbjct: 123 LTSGCSQAIDLCLAVLAN----------PGQNILVPRPGFSLYKTLAESMGIEVKLYNLL 172
Query: 256 --SSYTVDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPV 305
S+ +DL L+ I T L+ + P+ P G + + I + + +P+
Sbjct: 173 PEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPI 227
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 54.9 bits (133), Expect = 2e-08
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 198 MTSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKVKHIRLT 255
+ SGG+ I+MA A D ++P P ++ +G+ +
Sbjct: 109 LCSGGSHGILMAITAICD----------AGDYALVPQPGFPHYETVCKAYGIGMHFYNCR 158
Query: 256 --SSYTVDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPV 305
+ + DL ++ T +L+ + P+ P G + + I +L E+ +P+
Sbjct: 159 PENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPL 213
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 51.0 bits (123), Expect = 4e-07
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 201 GGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAF---DKAANYFGMKVKHIRLTSS 257
G +E I ++ + +I++ P++ + A G+ V L +
Sbjct: 86 GASEIIELSISLFE------------KILIIV---PSYAEYEINAKKHGVSVVFSYLDEN 130
Query: 258 YTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPVHVDCC 310
+D + S I +++G+ PN P G + + + KL E+ + +D
Sbjct: 131 MCIDYEDIISKIDDVDSVIIGN-PNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEA 185
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 49.0 bits (118), Expect = 2e-06
Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 30/162 (18%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANY---FGMKVKHIRLT 255
TSG TE+ +A Y + I++ H + A + G +V++I +
Sbjct: 66 TSGATEANNLAIIGYAMRNARKGK----HILVSAVEHMSVINPAKFLQKQGFEVEYIPVG 121
Query: 256 SSYTVDLAALQSAITGNT----VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCL 311
VD++ + + +T V N GT+ + I+++ +H+D
Sbjct: 122 KYGEVDVSFIDQKLRDDTILVSVQHA----NNEIGTIQPVEEISEVLAGKAA-LHIDAT- 175
Query: 312 GGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHK-YGFTPKG 352
++ G D G +++ ++ YG PKG
Sbjct: 176 --------ASVG--QIEVDVEKIGADMLTISSNDIYG--PKG 205
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 48.2 bits (116), Expect = 2e-06
Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 37/167 (22%)
Query: 199 TSGGTESIMMACK-AYRDYAREEKGISLPEIVLPTTA--HPAFDKAANY---FGMKVKHI 252
TS TESI K + + ++ I+ TT H A + Y G KVK++
Sbjct: 67 TSCATESINWILKTVAETFEKRKR-----TII--TTPIEHKAVLETMKYLSMKGFKVKYV 119
Query: 253 RLTSSYTVDLAALQSAITGNT----VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPV--H 306
+ S V L L+ + +T +M N GT+ + + ++ +K H
Sbjct: 120 PVDSRGVVKLEELEKLVDEDTFLVSIMAA----NNEVGTIQPVEDVTRIVKKKNKETLVH 175
Query: 307 VDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHK-YGFTPKG 352
VD G PF V S HK +G PKG
Sbjct: 176 VDAV---------QTIG--KIPFSLEKLEVDYASFSAHKFHG--PKG 209
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 48.0 bits (115), Expect = 3e-06
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 28/119 (23%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYF------GMKVK 250
T+G TE++ A A E++ P++D +Y G VK
Sbjct: 97 TAGATEALYAAITALVR----------NGDEVICFD---PSYD---SYAPAIALSGGIVK 140
Query: 251 HIRLT-SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPV 305
+ L + VD + ++ T +++ + P+ P T+ D A+ + + I V
Sbjct: 141 RMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFV 199
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 48.2 bits (114), Expect = 4e-06
Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 18/176 (10%)
Query: 259 TVDLAALQSAITGNT-----VMLVGSMPNFPYGT---MDDIGAIAKLGEKYGIPVHVDCC 310
+DL LQ I + + N G M ++ A+ +L E +GI V D
Sbjct: 157 DIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDAT 216
Query: 311 --LGGFLAPFMSAAGYPLPPFD----FSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYK 364
+ G+ ++ K G + + D +
Sbjct: 217 RCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFS 276
Query: 365 HCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRYHFNYK 420
+ V +YG + R +A M + + + + K
Sbjct: 277 SAKELVVVYEGMPSYGGLA---GRDMEAMAIGLREAMQYEYIEHR-VKQVRYLGDK 328
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 47.6 bits (114), Expect = 5e-06
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 30/121 (24%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYF------GMKVK 250
T G TE+I A + P E++L P +D +Y G
Sbjct: 92 TVGATEAIAAAVLGLVE----------PGSEVLLIE---PFYD---SYSPVVAMAGAHRV 135
Query: 251 HIRLT---SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIP 304
+ L + +D AL+ A+T T L+ + P+ P G + ++ AIA++ +
Sbjct: 136 TVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLV 195
Query: 305 V 305
V
Sbjct: 196 V 196
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 46.7 bits (111), Expect = 8e-06
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 245 FGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMP------NFPYGTMDDIGAIAKL- 297
FG+ K + L +L ++ + + + + + ++DI +I
Sbjct: 147 FGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCV 206
Query: 298 -GEKYGIPVHVDCCLGGFLA 316
+ I VD C G F+
Sbjct: 207 KNIRKDIICFVDNCYGEFMD 226
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 46.6 bits (111), Expect = 1e-05
Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 9/115 (7%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSS- 257
T G + ++ + + + G K + L
Sbjct: 111 TVGSMQGCFVSFLVANR-THKNRE---YGTLFIDPGFNLNKLQCRILGQKFESFDLFEYR 166
Query: 258 -YTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPVHVD 308
+ TG ++ S PN P +++ I +L K+ + V D
Sbjct: 167 GEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIED 221
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 46.0 bits (110), Expect = 2e-05
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 30/121 (24%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYF------GMKVK 250
TSG TE++ + ++ P E+V+ P FD Y G K +
Sbjct: 84 TSGATEALYVLLQSLVG----------PGDEVVVLE---PFFD---VYLPDAFLAGAKAR 127
Query: 251 HIRLTSS---YTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIP 304
+RL + + +DL+AL+ A+T T L+ + P P G + ++ AIA+L + +
Sbjct: 128 LVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLF 187
Query: 305 V 305
+
Sbjct: 188 L 188
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 46.1 bits (110), Expect = 2e-05
Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 40/217 (18%)
Query: 109 SQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDL----VDLLTEVFGLTSYTNP 164
SQ R +I ELV+ Y V + + + L+ E T
Sbjct: 2 SQEELRQQIAELVAQYAETAMAPKPFEAGKSVVPPSGKVIGTKELQLMVEASLDGWLT-- 59
Query: 165 LHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGIS 224
E ++ + + T+ G+ + ++A A + +
Sbjct: 60 ----TGRFNDAFEKKLGEYLGVPY-------VLTTTSGSSANLLALTALTSPKLGVRALK 108
Query: 225 LP--EIVLP-----TTAHPAFDKAANYFGMKVK--HIRLTSSYTVDLAALQSAITGNT-- 273
P E++ TT +P G+ + + +Y V+ + +++A++ T
Sbjct: 109 -PGDEVITVAAGFPTTVNPTI-----QNGLIPVFVDVDI-PTYNVNASLIEAAVSDKTKA 161
Query: 274 VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+M+ + G + D+ + ++ +KY + + DCC
Sbjct: 162 IMIA----HT-LGNLFDLAEVRRVADKYNLWLIEDCC 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 67/427 (15%), Positives = 120/427 (28%), Gaps = 120/427 (28%)
Query: 40 VYVYESLFSRDPFD----TDSLTGKLKKRVFKLARKIPAVRKKLEEETGKVAKLFQDDIK 95
+ V+E F + FD D L K I + K +LF +
Sbjct: 22 LSVFEDAFVDN-FDCKDVQDMPKSILSKEEID---HI--IMSKDAVS--GTLRLFWTLLS 73
Query: 96 QNNAGLEYFLELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEV 155
+ ++ F+E E+L + +Y + + +Q ++T +
Sbjct: 74 KQEEMVQKFVE---------EVLRI--------NYKFLMSPIK---TEQRQP--SMMTRM 111
Query: 156 FGLTSYTNPLH--PDIFP--GVCKMEAEVIKMCARMFNGGPET----CGCMTSGGTESIM 207
+ + L+ +F V +++ +K+ + P G + G+
Sbjct: 112 Y--IEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDG-V--LGSGKTW 165
Query: 208 MACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQS 267
+A Y + K D F + +K+ + L L
Sbjct: 166 VALDVCLSYKVQCK----------------MD--FKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 268 AITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLP 327
I N N A+L + +C L L +A
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKPYENCLL--VLLNVQNAK--AWN 260
Query: 328 PFDFS---LPGVTS----------------ISVDTHKYGFTPKGSSVVLYRDLKYKHCQY 368
F+ S L +T+ IS+D H TP +L LKY C+
Sbjct: 261 AFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCR- 314
Query: 369 FVTSDWPG-GNYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRYHFNY-------K 420
D P +P ++ ++ W H N +
Sbjct: 315 --PQDLPREVLTTNPRR--------LSIIAESIRDGLATWDNWK----HVNCDKLTTIIE 360
Query: 421 SCLQNLS 427
S L L
Sbjct: 361 SSLNVLE 367
Score = 41.0 bits (95), Expect = 7e-04
Identities = 35/269 (13%), Positives = 63/269 (23%), Gaps = 94/269 (34%)
Query: 48 SRDPFDTDSLTGKLKKRVFKLARKIPA------VRKKLEEETGKVAKLF----------Q 91
S S+ +L+ R+ K V+ K F +
Sbjct: 221 SNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNA------KAWNAFNLSCKILLTTR 273
Query: 92 D----DIKQNNAGLEYFLELPSQGRNRLEILELVSNYLA--------------------- 126
D L+ S E+ L+ YL
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 127 ----RGHYD-WKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPD----------IFP 171
R W ++ D LT + S L P +FP
Sbjct: 334 AESIRDGLATWD---------NWKHVNCDKLTTIIES-SLNV-LEPAEYRKMFDRLSVFP 382
Query: 172 GVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKG--ISLPEIV 229
+ ++ + ++ ++ ++ Y ++ K IS+P I
Sbjct: 383 PSAHIPTILLSL---IWFDVIKSD-------VMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 230 LPTTAHPAFDKAANYFGMKVKHIRLTSSY 258
L + A H + Y
Sbjct: 433 LELKVKLENEYA--------LHRSIVDHY 453
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 44.8 bits (107), Expect = 3e-05
Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 17/117 (14%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKVKHIRLT- 255
T+G T + ++ + + P ++ + G +V ++
Sbjct: 87 TNGATGANLLVLYSLIE----------PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEE 136
Query: 256 -SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPVHVD 308
+ + DL L+ I T M+ + N P G + + + ++ + G + D
Sbjct: 137 ENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD 193
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 44.2 bits (105), Expect = 5e-05
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 31/132 (23%)
Query: 192 PETCGCMTSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDK---AANYFG 246
P T +T G E++ + + D E+++ P FD G
Sbjct: 100 PMTEVLVTVGAYEALYATIQGHVD----------EGDEVIIIE---PFFDCYEPMVKAAG 146
Query: 247 MKVKHIRLT----------SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGA 293
+ I L + + +D L++ T M++ + P+ P G + ++
Sbjct: 147 GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEV 206
Query: 294 IAKLGEKYGIPV 305
+A L +K+ +
Sbjct: 207 VANLCKKWNVLC 218
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 44.3 bits (104), Expect = 7e-05
Identities = 36/282 (12%), Positives = 71/282 (25%), Gaps = 59/282 (20%)
Query: 117 ILELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYT-----------NPL 165
+ + Y++R + G YY + + FG T + + L
Sbjct: 110 FFKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLL 169
Query: 166 HPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGISL 225
+ G AE K AR++ + + G + + A + +
Sbjct: 170 IHE---GPAV-AAE--KHAARVY--NADKTYFVLGGSSNANNTVTSALV--SNGDL---- 215
Query: 226 PEIVLPTTAH-------------------PAFDKAANYFGMKVKHIRLTS-SYTVDLAAL 265
++ H + G+
Sbjct: 216 --VLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDP 273
Query: 266 QSAITGNTV-MLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLA-----PFM 319
+ A + V + + GT+ + + K + D G+
Sbjct: 274 ERAKWKRPFRLAVIQLGTY-DGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNS 332
Query: 320 SA-AGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRD 360
S L P D + V S HK +S + +D
Sbjct: 333 SPLLIDDLGPEDPGIIVVQS----VHKQQAGFSQTSQIHKKD 370
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 43.7 bits (104), Expect = 7e-05
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 23/130 (17%)
Query: 185 ARMFNGGPE--TCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAA 242
A G +E I A +AY A E ++V+P + + A
Sbjct: 61 AAHHQVEAPSILLTA---GSSEGIRAAIEAY---ASLEA-----QLVIPELTYGDGEHFA 109
Query: 243 NYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSM-----PNFPYGTMDDIGAIAKL 297
GMKV +++ ++ D+ L++A+ + S+ PN P GT+ I
Sbjct: 110 KIAGMKVTKVKMLDNWAFDIEGLKAAVAAYS---GPSIVYLVNPNNPTGTITPADVIEPW 166
Query: 298 GEKYGIPVHV 307
P +
Sbjct: 167 IAS--KPANT 174
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 43.7 bits (103), Expect = 7e-05
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 261 DLAALQSAITGNTVML-VGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLG 312
+ + + I +T+++ GS + +++ + + V VD G
Sbjct: 130 KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASG 182
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 43.6 bits (103), Expect = 8e-05
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 245 FGMKVKHIRLTSSYTVDLAALQSAITGNTVMLV----GSMPNFPYGTMDDIGAIAKLGEK 300
F + + L + VD + +T T M+ + P T++ I + +
Sbjct: 132 FHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKN 191
Query: 301 YG--IPVHVDCCLGGFLAP 317
+ V VD C G F+
Sbjct: 192 INPEVIVFVDNCYGEFVEY 210
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 43.3 bits (103), Expect = 1e-04
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
+ FG+ V+ + +++A+ T ++ P P ++ DI +A +
Sbjct: 120 LSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGI 174
Query: 298 GEKYGIPVHVD 308
+ G + VD
Sbjct: 175 AHQQGALLVVD 185
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 43.4 bits (103), Expect = 1e-04
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 32/133 (24%)
Query: 192 PETCGCMTSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDK---AANYFG 246
P + G S+ + + D P E+++ P +D G
Sbjct: 84 PNEEILVAVGAYGSLFNSIQGLVD----------PGDEVIIMV---PFYDCYEPMVRMAG 130
Query: 247 MKVKHIRL-----------TSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIG 292
I L +S +T D L+S + T ++ + P+ P G + ++
Sbjct: 131 AVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQ 190
Query: 293 AIAKLGEKYGIPV 305
IA L K+
Sbjct: 191 VIADLCVKHDTLC 203
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 43.3 bits (103), Expect = 1e-04
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
FG+K++H+ + DL AL++A+T T ++ P P M DI +AK+
Sbjct: 121 LHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKI 175
Query: 298 GEKYGIPVHVDCCLGGFLAPF 318
K+G V VD + P+
Sbjct: 176 ARKHGATVVVDNT---YCTPY 193
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 43.1 bits (102), Expect = 1e-04
Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 33/134 (24%)
Query: 192 PETCGCMTSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDK---AANYFG 246
P +T GG ++ A +A D E+++ P FD G
Sbjct: 90 PLRNVLVTVGGYGALFTAFQALVD----------EGDEVIIIE---PFFDCYEPMTMMAG 136
Query: 247 MKVKHIRLT------------SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDI 291
+ + L S++ +D L T T LV + PN P G + +++
Sbjct: 137 GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREEL 196
Query: 292 GAIAKLGEKYGIPV 305
+A L +++ +
Sbjct: 197 ELVASLCQQHDVVC 210
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 42.6 bits (101), Expect = 2e-04
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 15/125 (12%)
Query: 185 ARMFNGGPE--TCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAA 242
A + E G E I + + V+ T + + A
Sbjct: 77 ADFYQLEEEELIFTA---GVDELIELLTRVL---LDTTT-----NTVMATPTFVQYRQNA 125
Query: 243 NYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYG 302
G +V+ I L DL + +AI T ++ PN P G ++ I ++
Sbjct: 126 LIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDR-- 183
Query: 303 IPVHV 307
+P V
Sbjct: 184 VPSDV 188
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 42.5 bits (101), Expect = 2e-04
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKVKHIRLT- 255
T+ TE++ + A D P EI++P ++P + ++G K R
Sbjct: 107 TAAVTEALQLIFGALLD----------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIE 156
Query: 256 -SSYTVDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPV 305
+ D+ ++ IT T + PN P G + I + +Y IPV
Sbjct: 157 EEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPV 210
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 39/128 (30%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYF------GMKVK 250
T+G E I+ + E+++ P FD Y G KV
Sbjct: 124 TTGANEGILSCLMGLLN----------AGDEVIVFE---PFFD---QYIPNIELCGGKVV 167
Query: 251 HIRLT------------SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIA 295
++ + +T+D + AIT T ++ + P+ P G + +++ +
Sbjct: 168 YVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLG 227
Query: 296 KLGEKYGI 303
+ K+ +
Sbjct: 228 NICVKHNV 235
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: LLP; 2.0A {Thermus
thermophilus}
Length = 412
Score = 41.7 bits (99), Expect = 3e-04
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 261 DLAALQSAITGNTVMLVG-SMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFM 319
+ A++ A++ T + ++ N P + D+ A+A L E+ G+ + VD G
Sbjct: 129 EPEAVREALSAKTRAVFVETVAN-PALLVPDLEALATLAEEAGVALVVDNTFG------- 180
Query: 320 SAAGYPLPPFDF 331
AAG P +
Sbjct: 181 -AAGALCRPLAW 191
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 41.7 bits (97), Expect = 3e-04
Identities = 27/221 (12%), Positives = 57/221 (25%), Gaps = 31/221 (14%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKA-ANYFGMKVKHI----- 252
G + + ++K V + H A G K +I
Sbjct: 97 AHQGRGAENILFPVLL--KYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKA 154
Query: 253 -----RLTSSYTVDLAALQSAITGNT-----VMLVGSMPNFPYGT---MDDIGAIAKLGE 299
D+ L+ I + ++ N G M ++ + ++ +
Sbjct: 155 FDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAK 214
Query: 300 KYGIPVHVDCCLGGFLAPF--MSAAGY----PLPPFDFSLPGVTSISVDTHKYGFTPKGS 353
++GI V +D A F Y ++++ K G
Sbjct: 215 QHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGG 274
Query: 354 SVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIA 394
V ++ + + G + G + A
Sbjct: 275 LVA----IRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAA 311
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 41.8 bits (99), Expect = 3e-04
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
+ +G++ + DL+ + A++ T + P+ P ++ DI A+ +L
Sbjct: 137 CSEILPRWGVQTVFVDGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTEL 191
Query: 298 GEKYGIPVHVD 308
G V +D
Sbjct: 192 AHAAGAKVVLD 202
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 41.3 bits (98), Expect = 4e-04
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
F FG++V I + D+ +++A NT M+ P P + DI IA +
Sbjct: 115 FTHWLPRFGIEVDLIDTS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVV 169
Query: 298 GEKYGIPVHVDCCLGGFLAPF 318
+ G + VD F +P
Sbjct: 170 CHERGARLVVDAT---FTSPC 187
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate,
gamma-elimination, direct sulfhydrylation, CY
metabolism, protein thiocarboxylate, TR; 2.20A
{Wolinella succinogenes}
Length = 430
Score = 40.2 bits (95), Expect = 9e-04
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 261 DLAALQSAITGNTVMLVG-SMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFM 319
D A++ A T +L ++ N P + D+ A++K+ GIP+ VD +
Sbjct: 156 DSLAVEHACDETTKLLFLETISN-PQLQVADLEALSKVVHAKGIPLVVDTTM-------- 206
Query: 320 SAAGYPLPPFDF 331
Y L
Sbjct: 207 -TPPYLLEAKRL 217
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 40.3 bits (95), Expect = 9e-04
Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 36/142 (25%)
Query: 199 TSGGTES----IMMACKAYRDYAREEKGISLPEIVLP-------TTA--HPAFDKAANYF 245
TSGGTES I + + + + T H + +
Sbjct: 84 TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHL 143
Query: 246 ----GMKVKHIRLTSSY-TVDLAALQSAITGNT----VMLVGSMPNFPYGTMDDIGAIAK 296
+V + ++ V++ + +A+ T +ML N G + I I++
Sbjct: 144 VEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLA----NNETGVIMPISEISR 199
Query: 297 LGEKYG----------IPVHVD 308
+ + VH D
Sbjct: 200 RIKALNQIRAASGLPRVLVHTD 221
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 40.1 bits (94), Expect = 0.001
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 245 FGMKVKHIRLTSSYTVDLAALQSAITGNTVMLV-----GSMPNFPYGTMDDIGAIAKL-- 297
+ + + LT VD A+ +AI NT M+ G P T+ I +
Sbjct: 138 YNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATR-PSFTISQIKEMIAFVK 196
Query: 298 GEKYGIPVHVDCCLGGF 314
K + V VD C G F
Sbjct: 197 EIKPDVVVFVDNCYGEF 213
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 39.1 bits (92), Expect = 0.002
Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 37/174 (21%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPA----FDKAANYFGMKVKHIRL 254
+ + + +A A E+++ A + +AA+ +G KVK +
Sbjct: 92 GADRAVLLSLLAEASSSRAGLGY-----EVIVSRLDDEANIAPWLRAAHRYGAKVKWAEV 146
Query: 255 TS-SYTVDLAALQSAITGNTVML-VGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLG 312
+ + +S I+ +T ++ V S G + D+ A+ KL G V VD
Sbjct: 147 DIETGELPTWQWESLISKSTRLVAVNSASGT-LGGVTDLRAMTKLVHDVGALVVVDHSAA 205
Query: 313 GFLAPFMSAAGYPLPPFDFSLPGVTSISVD-----THK-YGFTPKGSSVVLYRD 360
AP+ D + D H G P +++RD
Sbjct: 206 ---APYR--------LLD-----IRETDADVVTVNAHAWGG--PPI-GAMVFRD 240
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 39.1 bits (92), Expect = 0.002
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 198 MTSGGTESIMMACKAYRDYAREEKGISLP---EIVLPTTAHPAFDKAANYFGMKVKHIRL 254
MT G S+ + +A ++ E + P + N G ++ +
Sbjct: 104 MTMGAAASLSICFRA----------LTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPA 153
Query: 255 TS-SYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKY 301
+ + +D AL+ I +T ++ + PN P GT+ + I ++ L EK
Sbjct: 154 DTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKK 204
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate,
aspartate aminotransferase, O-antigen; HET: G4M; 1.60A
{Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Length = 391
Score = 38.3 bits (90), Expect = 0.004
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 257 SYTVDLAALQSAITGNT--VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
++ +D A L++ IT T +M V + YG + D+ I ++ ++ + V D
Sbjct: 129 TFNLDAAKLEALITPRTKAIMPV----HL-YGQICDMDPILEVARRHNLLVIEDAA 179
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 37.5 bits (88), Expect = 0.005
Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 19/125 (15%)
Query: 185 ARMFNGGPE--TCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAA 242
A F+ + G E + V +
Sbjct: 61 AEHFSCPEDNLMLVR---GIDECFDRISAEFSS----------MRFVTAWPGFDGYRARI 107
Query: 243 NYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYG 302
G++ I LT +D L A +V + P+ P G G + +L ++
Sbjct: 108 AVSGLRHFEIGLTDDLLLDPNDL--AQVSRDDCVVLANPSNPTGQALSAGELDQLRQR-- 163
Query: 303 IPVHV 307
+
Sbjct: 164 AGKLL 168
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 37.5 bits (88), Expect = 0.006
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 246 GMKVKHIRLTSSYTVDLAALQSAITGNTVML-VGSMPNFPYGTMDDIGAIAKLGEKYGIP 304
G +K ++L + DL ++ ++ T ++ V + N G ++ IA+L + G
Sbjct: 143 GAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNT-LGCVNPAEEIAQLAHQAGAK 201
Query: 305 VHVDCC 310
V VD C
Sbjct: 202 VLVDAC 207
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 37.7 bits (87), Expect = 0.006
Identities = 35/235 (14%), Positives = 63/235 (26%), Gaps = 55/235 (23%)
Query: 150 DLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESI--- 206
D+ V L + L G K EAE + AR+F + +T+G + +
Sbjct: 179 DISISVSELG---SLLDHS---GPHK-EAE--QYIARVF--NADRSYMVTNGTSTANKIV 227
Query: 207 MMACKAYRDYAREEKGISLPEIVLPTTAH------------------PAFDKAANYFGMK 248
M I++ H P + G+
Sbjct: 228 GMYSAPAGS-----------TILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIP 276
Query: 249 VKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVD 308
T+ ++ V V + + G + + I K + I H D
Sbjct: 277 QSEF---QHATIAKRVKETPNATWPVHAVITNSTY-DGLLYNTDFIKKTLDVKSI--HFD 330
Query: 309 CCLGG---FLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRD 360
F + G + + T THK +S++ +
Sbjct: 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYET---QSTHKLLAAFSQASMIHVKG 382
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.007
Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 54/167 (32%)
Query: 202 GTESIMMACKAYR-------------DYAREEKGISLPEIVL--PT--TAHPAFDKA--- 241
G++ M Y+ ++ ++ G S+ +IV+ P T H +K
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 242 -ANYFGMKVKHI---------------RLTSSYTV--DLAALQSAITGNT--VMLVGSMP 281
NY M + I ++SYT + L + T T + +
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQFTQPALTLMEKA 1742
Query: 282 NF----PYGTMDDIGAIA--KLGEKYGIPVHVDCCLGGFLAPFMSAA 322
F G + A LGE Y L + S
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGE-YA----ALASLADVM-SIESLV 1783
Score = 37.7 bits (87), Expect = 0.009
Identities = 46/320 (14%), Positives = 85/320 (26%), Gaps = 127/320 (39%)
Query: 2 ADFLANLLHNLKISINSQFVNKEPWQIVAMTTASVLTTVYVY-ES--LFSRD-------- 50
FL +V+ VL E+ L D
Sbjct: 62 GKFL-------------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 51 PFDTDSLTGKLKK--RVFKLARKIPAVRKKLEEETGKVAKLFQDDIKQNNAGL------- 101
+ D+ K K+ + + AR ++ ++++ + LF+ + + NA L
Sbjct: 109 LQENDTTLVKTKELIKNYITARI--MAKRPFDKKSN--SALFRA-VGEGNAQLVAIFGGQ 163
Query: 102 ----EYFLELPSQGRN-----RLEILELVS------NYLARGHYDWKHGRVSGAVYYYQQ 146
+YF EL R+ + + +L+ + L R D + + Q
Sbjct: 164 GNTDDYFEEL----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE--------KVFTQ 211
Query: 147 --DLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTE 204
++++ L +P P
Sbjct: 212 GLNILEWLE------------NPSNTPDK------------------------------- 228
Query: 205 SIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIR-LTSSYTVDLA 263
Y IS P I + AH + A G +R T
Sbjct: 229 -------DYLLSI----PISCPLIGVIQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 264 ALQSAITGNTVMLVGSMPNF 283
L +A+ + S +F
Sbjct: 276 GLVTAV---AIAETDSWESF 292
Score = 33.5 bits (76), Expect = 0.19
Identities = 38/208 (18%), Positives = 58/208 (27%), Gaps = 84/208 (40%)
Query: 200 SGGTESIMMACKAYR--------DYAR----EEKGISLPEIV---LPTTA--H-----PA 237
SG +S+ R D +R E K + LP + H PA
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK----LKFSNRFLPVASPFHSHLLVPA 435
Query: 238 FDK-----AANYFGMKVKHIRLT--SSYT-VDLAALQSAITGNTVMLVGSMP-NFPYGTM 288
D N K I++ ++ DL L +I+ V + +P +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE---- 491
Query: 289 DDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTS-ISVDTH--K 345
+ H+ DF PG S + V TH K
Sbjct: 492 ----TTTQFK-----ATHI---------------------LDFG-PGGASGLGVLTHRNK 520
Query: 346 YGFTPKGSSVVLYRDLK--------YKH 365
G G V++ L +K
Sbjct: 521 DG---TGVRVIVAGTLDINPDDDYGFKQ 545
Score = 33.1 bits (75), Expect = 0.20
Identities = 50/314 (15%), Positives = 85/314 (27%), Gaps = 127/314 (40%)
Query: 2 ADFLANLLHNLKISINSQFVNKEPWQIV----------------AMTTASVLTTVYVYES 45
AD + SI V P + AM +++ E
Sbjct: 1649 AD--NHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 46 LFSRDPFDTDSLT-----GKLKK------RVFKLARKIPAVRKKLEEETGKVA-KLFQDD 93
+F + S T G L + L K A + L+ + A F
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALT-LMEK--AAFEDLKSKGLIPADATF--- 1759
Query: 94 IKQNNAGL---EY--------FLELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVY 142
AG EY + + S ++E+V RG + AV
Sbjct: 1760 -----AGHSLGEYAALASLADVMSIES-------LVEVVF---YRGMT------MQVAV- 1797
Query: 143 YYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGG 202
+D + G ++Y M A P G + +
Sbjct: 1798 --PRDEL-------GRSNY--------------------GMIAI----NP---GRVAASF 1821
Query: 203 TESIMMACKAYRDYAREEKGISLPEIV---LP--------TTAHPAFDKAA---NYFG-M 247
++ A + + + G + EIV + A D N+
Sbjct: 1822 SQE---ALQYVVERVGKRTGWLV-EIVNYNVENQQYVAAGDLR--ALDTVTNVLNFIKLQ 1875
Query: 248 KVKHIRLTSSYTVD 261
K+ I L S +++
Sbjct: 1876 KIDIIELQKSLSLE 1889
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 37.6 bits (88), Expect = 0.007
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAIT-GNTVML-VGSMPNFPYGTMDDIGAIA 295
+ G+ I D+ AL+ A+ + S N P+ DI ++
Sbjct: 170 IETILPKMGITATVIDPA-----DVGALELALNQKKVNLFFTESPTN-PFLRCVDIELVS 223
Query: 296 KLGEKYGIPVHVDCCLGGFLAPF 318
KL + G V +D F P
Sbjct: 224 KLCHEKGALVCIDGT---FATPL 243
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 37.6 bits (88), Expect = 0.007
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
+ G+ VK + T L + +AI T ++ P P + DI I+++
Sbjct: 188 LSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEM 242
Query: 298 GEKYGIPVHVD 308
G V VD
Sbjct: 243 AHAQGALVLVD 253
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis;
HET: MSE PMP; 1.80A {Coxiella burnetii}
Length = 374
Score = 37.5 bits (88), Expect = 0.007
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 257 SYTVDLAALQSAITGNT-----VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
Y +D +++AIT T V G++ + M + IAK K+ + + D C
Sbjct: 110 GYVIDPEKIEAAITDKTKAIMPVHYTGNIAD-----MPALAKIAK---KHNLHIVEDAC 160
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 37.1 bits (87), Expect = 0.008
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 15/119 (12%)
Query: 192 PETCGCMTSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKV 249
P G E + A + P ++LP A+P++ AA ++
Sbjct: 86 PRREALALIGSQEGLAHLLLALTE----------PEDLLLLPEVAYPSYFGAARVASLRT 135
Query: 250 KHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPV 305
I L DL A+ + +L+ + PN P G L K+G+ +
Sbjct: 136 FLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWL 194
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 37.5 bits (88), Expect = 0.008
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 246 GMKVKHIRLTSSYTVDLAALQSAITGNTVML-VGSMPNFPYGTMDDIGAIAKLGEKYGIP 304
G +++ I L T+ L L + T +L + + N GT + + + L ++G
Sbjct: 138 GAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNV-LGTENPLAEMITLAHQHGAK 196
Query: 305 VHVDCC 310
V VD
Sbjct: 197 VLVDGA 202
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars,
antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces
venezuelae} PDB: 2oge_A*
Length = 399
Score = 37.2 bits (87), Expect = 0.008
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 257 SYTVDLAALQSAITGNTVMLVGSMPNFP---YGTMDDIGAIAKLGEKYGIPVHVDCC 310
T+D ++ AIT T L+ P YG D+ A+ +L +++G+ + D
Sbjct: 136 HPTLDPLLVEKAITPRTRALL------PVHLYGHPADMDALRELADRHGLHIVEDAA 186
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine
sulfhydrase, structural genomic structural
genomics/proteomics initiative; HET: PLP; 2.60A {Thermus
thermophilus} SCOP: c.67.1.3
Length = 421
Score = 37.1 bits (87), Expect = 0.009
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 261 DLAALQSAITGNTVMLVG-SMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFM 319
+ T S+ N P + D+ A+A+ + G+ + VD G
Sbjct: 133 RPEEFLALTDEKTRAWWVESIGN-PALNIPDLEALAQAAREKGVALIVDNTFG------- 184
Query: 320 SAAGYPLPPFDF 331
GY L P +
Sbjct: 185 -MGGYLLRPLAW 195
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 37.2 bits (87), Expect = 0.010
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 31/129 (24%)
Query: 196 GCMTSGGTESIMMACKA--YRDYAREEKGISLPEIVLP-----TTAHPAFDKAANYFGMK 248
M S G+ + ++ A + R +KG EI++P TT +P +G++
Sbjct: 52 AVMVSSGSTANLLMIAALFFTKKPRLKKG---DEIIVPAVSWSTTYYPLQ-----QYGLR 103
Query: 249 VKH--IRLTSSYTVDLAALQSAITGNT--VMLV---GSMPNFPYGTMDDIGAIAKLGEKY 301
VK I + ++ +D+ +L+ A+T +T ++ V G+ N D+I I
Sbjct: 104 VKFVDIDI-NTLNIDIESLKEAVTDSTKAILTVNLLGNPNN-----FDEINKIIG---GR 154
Query: 302 GIPVHVDCC 310
I + D C
Sbjct: 155 DIILLEDNC 163
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET:
TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Length = 373
Score = 36.7 bits (86), Expect = 0.010
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 257 SYTVDLAALQSAITGNT--VMLV---GSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+Y +D + ++SAIT T ++ V G + MD+I IAK KY + + D
Sbjct: 109 TYNIDPSLIESAITEKTKAIIAVHLYGQPAD-----MDEIKRIAK---KYNLKLIEDAA 159
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 36.7 bits (86), Expect = 0.012
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 257 SYTVDLAALQSAITGNT-----VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+Y +D L++AIT T V L G + D I AIA KYGIPV D
Sbjct: 108 TYNLDPQLLEAAITPRTKAIIPVSLYGQCAD-----FDAINAIAS---KYGIPVIEDAA 158
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 36.4 bits (85), Expect = 0.017
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
F+ A FG++V I ++ + NT ++ P P + D+ + K
Sbjct: 118 FEHALTKFGIQVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKD 172
Query: 298 GEK-YGIPVHVDCCLGGFLAPFMS 320
G+ V D F S
Sbjct: 173 AHSQEGVLVIADNT-------FCS 189
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 36.2 bits (84), Expect = 0.019
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 28/136 (20%)
Query: 199 TSGGTESIMMA----CKAYRDYAREEKGISLP--EIVLP-----------TTAHPAFDKA 241
T+G + A+ + ++K I+LP F
Sbjct: 112 TNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAV 171
Query: 242 -ANYFGMKVKHIRLTSSYTVDLAALQ---SAITGNTVMLVGSMPNF--PYG---TMDDIG 292
+ + Y VD AL+ + G + P G T +++
Sbjct: 172 LPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAIC--CSRPTNPTGNVLTDEEMA 229
Query: 293 AIAKLGEKYGIPVHVD 308
+A++ ++Y IP+ +D
Sbjct: 230 HLAEIAKRYDIPLIID 245
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 36.0 bits (84), Expect = 0.020
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
FD A +V + D AL++A+ +++ P+ P + DI I L
Sbjct: 108 FDSLAKRGCYRVLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHL 162
Query: 298 GEKYGIPVHVD 308
+ G VD
Sbjct: 163 AREVGAVSVVD 173
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 36.0 bits (84), Expect = 0.020
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
DK + ++ + L DL A+++AI T ++ P P ++ DI IA+L
Sbjct: 122 IDKVFTGWNVEYTPVALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQL 176
Query: 298 GEKYGIPVHVD 308
G V VD
Sbjct: 177 GADSSAKVLVD 187
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 35.9 bits (84), Expect = 0.022
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKVKHIRLT- 255
G ++ +M A+ E+++PT A ++ A G K +
Sbjct: 93 LLGANQAFLMGLSAFLK----------DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYE 142
Query: 256 -SSYTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPV 305
+ +++ L+ +T T L+ + P P G + D+ IA ++ + V
Sbjct: 143 EDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIV 196
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 36.0 bits (84), Expect = 0.023
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 257 SYTVDLAALQSAITGNT--VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+ V +++AIT T ++ V ++ G D+ AI LGE+YGIPV D
Sbjct: 112 TLMVTPEHIEAAITPQTKAIIPV----HY-AGAPADLDAIYALGERYGIPVIEDAA 162
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 35.6 bits (83), Expect = 0.025
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKVKHIRLTS 256
T G + + A + D E+++ +P + + G K T
Sbjct: 95 TGGSSLGLFFALSSIID----------DGDEVLIQNPCYPCYKNFIRFLGAKPVFCDFT- 143
Query: 257 SYTVDLAALQSAITGNTVMLVGSMPNFPYGT-MDDIGAIAKLGEKYGIPVHVD 308
+ +L+ A++ T ++ + P+ P G +D I + + + D
Sbjct: 144 -----VESLEEALSDKTKAIIINSPSNPLGEVIDR--EIYEFAYENIPYIISD 189
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 35.6 bits (83), Expect = 0.028
Identities = 8/54 (14%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 257 SYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+ +D + +A+T T + + +G + K+ +++G+ ++ D
Sbjct: 123 TGNLDPDQVAAAVTPRTSAV---VGVHLWGRPCAADQLRKVADEHGLRLYFDAA 173
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase);
rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A
{Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Length = 388
Score = 35.6 bits (83), Expect = 0.029
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 257 SYTVDLAALQSAITGNT--VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+Y +D A+ +A+T T +M V M G M D+ A+AK+ G+P+ D
Sbjct: 111 TYNLDPEAVAAAVTPRTKVIMPV-HM----AGLMADMDALAKISADTGVPLLQDAA 161
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 35.3 bits (82), Expect = 0.035
Identities = 13/116 (11%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 198 MTSGGTESIMMACKAYRDYAREEKGISLPEIVLPT--TAHPAFDKAANYFGMKVKHIRLT 255
+T+G + + + + + P + + + + L
Sbjct: 103 LTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLP 162
Query: 256 S-SYTVDLAALQSAITGNTVMLVGSMPNF--PYG---TMDDIGAIAKLGEKYGIPV 305
+ + I T M+ + P G T +++ + +L ++ IP+
Sbjct: 163 EGQFKYHVDFEHLHIGEETGMIC--VSRPTNPTGNVITDEELMKLDRLANQHNIPL 216
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 35.2 bits (82), Expect = 0.037
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 28/122 (22%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGM------KVK 250
T+GG+E+I+ + + P EI++ P + ANY K+
Sbjct: 108 TNGGSEAILFSFAVIAN----------PGDEILVLE---PFY---ANYNAFAKIAGVKLI 151
Query: 251 HIRLTSSYTVDLAA-LQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPVH 306
+ + L+S I T +V S P P G + D++ + ++ E++G+ +
Sbjct: 152 PVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLI 211
Query: 307 VD 308
VD
Sbjct: 212 VD 213
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 35.4 bits (81), Expect = 0.039
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 288 MDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFM--SAAGYPLPPFDFSLPGVT----SISV 341
+ ++ A+ + +KY IPV +D A F+ A Y + +++
Sbjct: 203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAM 262
Query: 342 DTHKYGFTPKGSSVVLYRD 360
K P G + + D
Sbjct: 263 SAKKDAMVPMGGLLCMKDD 281
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 35.2 bits (82), Expect = 0.040
Identities = 18/145 (12%), Positives = 43/145 (29%), Gaps = 25/145 (17%)
Query: 171 PGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGIS---LPE 227
E + + G + T +++ + + E
Sbjct: 32 KRSLLFEEALCEFL-----GVKHALVF--NSATSALLTLYRNF--------SEFSADRNE 76
Query: 228 IVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNT--VMLVGSMPNFPY 285
I+ + A G + + +D AL+ I T ++ V ++
Sbjct: 77 IITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSV----DY-A 131
Query: 286 GTMDDIGAIAKLGEKYGIPVHVDCC 310
G ++ ++ KL +K+ + D
Sbjct: 132 GKSVEVESVQKLCKKHSLSFLSDSS 156
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin,
aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus
circulans} PDB: 2c7t_A*
Length = 418
Score = 35.0 bits (81), Expect = 0.043
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 13/59 (22%)
Query: 257 SYTVDLAALQSAITGNT--VMLV---GSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC 310
+Y +D ++SAIT T ++ V GSM N MD+I IA+ ++ + V DC
Sbjct: 115 TYCIDPQLIKSAITDKTKAIIPVHLFGSMAN-----MDEINEIAQ---EHNLFVIEDCA 165
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 34.9 bits (81), Expect = 0.053
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 21/121 (17%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKVKHIRLTS 256
T G ++ +A A ++ + + A K +F ++ ++L
Sbjct: 108 TPGTQGALFLAVAATVA----------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDY 157
Query: 257 S------YTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKYGIPVHV 307
+DL L+ A + + S PN P G + ++IG IA L +YG V
Sbjct: 158 VSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217
Query: 308 D 308
D
Sbjct: 218 D 218
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 34.0 bits (78), Expect = 0.11
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 22/116 (18%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGM------KVKHI 252
T GGT +I+ A + + +KG +I + P F Y + ++ +
Sbjct: 170 TEGGTAAIVYAFHSLAENHLLKKG---DKIAINE---PIF---TPYLRIPELKDYELVEV 220
Query: 253 RLTSS----YTVDLAALQSAITGNTVMLVGSMPNFPYGTM---DDIGAIAKLGEKY 301
L S + ++ ++ + L+ P P + + AI + EK
Sbjct: 221 DLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKN 276
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 33.7 bits (78), Expect = 0.11
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 233 TAHPAF---DKAANYFGMKVKHIRLTSSYTVDLAALQSAITG-NTVMLVGSMPNFPYGTM 288
P F +A + G++ + L + +T+D A+ +A+ ++ + PN P G +
Sbjct: 114 APVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNL 173
Query: 289 DDIGAIAKL-----GEKYGIPVHVD 308
D + + G V VD
Sbjct: 174 FDAADMEAIVRAAQGSVCRSLVVVD 198
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 33.3 bits (76), Expect = 0.15
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 285 YGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTH 344
YG ++ + K + IPV +D G P + + H
Sbjct: 158 YGETFNVEEVIKSLHQLNIPVLIDEAHGAH------FGLQGFPDSTLNY-QADYVVQSFH 210
Query: 345 KYGFTPKGSSVVLYRD 360
K SV+
Sbjct: 211 KTLPALTMGSVLYIHK 226
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism
PLP-dependent enzyme family, CYST gamma lyase,
pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae
PV} PDB: 3e6g_A* 3nnp_A*
Length = 400
Score = 32.9 bits (76), Expect = 0.21
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 238 FDK-AANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAK 296
F++ G+ + LT D AA ++AI +T M+ P P + DI AIA
Sbjct: 122 FERVRRRTAGLDFSFVDLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAV 176
Query: 297 LGEKYGIPVHVD 308
+ K+G+ VD
Sbjct: 177 IARKHGLLTVVD 188
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 32.9 bits (76), Expect = 0.22
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 228 IVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYG- 286
+++PT A+P F + + I + ++ ++L ++ ++ P P G
Sbjct: 108 VIVPTPAYPPFFHLLSATQREG--IFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGM 165
Query: 287 --TMDDIGAIAKLGEKYGIPV-----HVDCCLGGFLAPFMSAA 322
+ + + L +Y V H G +
Sbjct: 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVS 208
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 32.6 bits (74), Expect = 0.25
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 11/132 (8%)
Query: 159 TSYT-NPLHPDIFPGVCKMEAEVIKMCARMFNG-GPETCGCMTSGGTESIMMACKAYRDY 216
SY NP+ I +E + ++ + N + G T+ I +
Sbjct: 90 MSYFFNPVSNFISFE---LEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPN 146
Query: 217 AREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVML 276
++V +P F + YF K + A + +
Sbjct: 147 MTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG------NAANYVNVSNPEQYIE 200
Query: 277 VGSMPNFPYGTM 288
+ + PN P G +
Sbjct: 201 MVTSPNNPEGLL 212
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 32.6 bits (75), Expect = 0.25
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 21/151 (13%)
Query: 227 EIVLPTTAHPAFDK--AANYFGMKVKHIRLTSSY-TVDLAALQSAITGNTVMLVGSMP-- 281
I +H D+ A +F K + + +D+ L+ + + P
Sbjct: 85 NIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPAC 144
Query: 282 -----NFPYGT---MDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYP-LPPFDFS 332
G+ +D+I AI + + + +H+D G + F +A P + +
Sbjct: 145 VSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMD---G---SRFANALVSLGCSPAEMT 198
Query: 333 LP-GVTSISVDTHKYGFTPKGSSVVLYRDLK 362
GV ++S K G + V+ L
Sbjct: 199 WKAGVDALSFGATKNGVLAAEAIVLFNTSLA 229
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 32.5 bits (75), Expect = 0.28
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 16/120 (13%)
Query: 192 PETCGCMTSGGTESIMMACKAYRDYAREEKGISLP--EIVLPTTAHPAFDKAANYFGMKV 249
E C+ G ++ + P ++LP + + K
Sbjct: 108 KEDEVCILYGTKNGLVAVPTCVIN----------PGDYVLLPDPGYTDYLAGVLLADGKP 157
Query: 250 KHIRLTSS-YTVDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPV 305
+ L Y D + + S I T ++ + PN P G T + + +
Sbjct: 158 VPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKI 217
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 32.2 bits (74), Expect = 0.33
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 257 SYTVDLAALQSAITGNT-----VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCC- 310
+Y +D+ L+ AI ++L + YG + I ++ ++ I + D
Sbjct: 104 TYNIDVDLLKLAIKECEKKPKALILT----HL-YGNAAKMDEIVEICKENDIVLIEDAAE 158
Query: 311 -LGGF 314
LG F
Sbjct: 159 ALGSF 163
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 32.1 bits (74), Expect = 0.39
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
F + A+ FG+K+ + + + L++AIT T ++ P P + DI A +
Sbjct: 122 FRQVASEFGLKISFVDCS-----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHI 176
Query: 298 GEKYG-IPVHVD 308
K+G I + VD
Sbjct: 177 VHKHGDIILVVD 188
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 31.8 bits (73), Expect = 0.42
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 227 EIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAI-TGNTVMLVGSMPNFPY 285
+ ++ A + + + + +D+ I ++ + PN P
Sbjct: 118 TALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPT 177
Query: 286 GTMDDIGAIAKLGEKYGIPVHVD 308
G + + + ++ V VD
Sbjct: 178 GDVTSLDDVERIINVAPGIVIVD 200
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis}
SCOP: c.67.1.3
Length = 331
Score = 31.7 bits (73), Expect = 0.48
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
F+ FG++V I + ++ + NT ++ P P + DI K
Sbjct: 54 FEHQLRKFGVEVDFIDMA-----VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQ 108
Query: 298 GEK-YGIPVHVDCCLGGFLAPF 318
K I V VD F +P
Sbjct: 109 ARKQKDILVIVDNT---FASPI 127
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 31.3 bits (72), Expect = 0.61
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 228 IVLPTTAHPAFDKAANYFGMKVKHIRLTSS----YTVDLAALQSAITGNTVMLVGSMPNF 283
I++ + F+ ++ L Y +D +++ I + ++ + P+
Sbjct: 117 IMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKDVKLFILCN-PHN 175
Query: 284 PYG---TMDDIGAIAKLGEKYGIPV-----HVDCCLGG 313
P G T D++ + + K+ + + H D L
Sbjct: 176 PVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKK 213
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 30.9 bits (71), Expect = 0.90
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 228 IVLPTTAHPAFDKAANYFGMKVKHIRLTSS---YTVDLAALQSAITGNTVMLVGSMPNFP 284
+++ +P F + ++ L Y +D L+ +++ P+ P
Sbjct: 109 VLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNP 168
Query: 285 YG---TMDDIGAIAKLGEKYGIPV-----HVDCCLGG 313
G +++ + L KY + V H D
Sbjct: 169 IGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYAD 205
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 30.6 bits (70), Expect = 0.91
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 258 YTVDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPVHVD 308
+ D ++ AIT T LV + PN P G + + A+A+L ++ + D
Sbjct: 150 FVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSD 203
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 30.5 bits (68), Expect = 0.96
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 86 VAKLFQDDIKQNNAGLEYFLELPSQGRNRL-EILELVSNYLARGHYDWKHGRVSGAVYYY 144
+++LF D KQ+ A L+ + L L +L+ + ++ + V
Sbjct: 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFE-TNPAALIKVLEL 110
Query: 145 QQDLVDLLTE 154
+ +V+L+ +
Sbjct: 111 CKVIVELIRD 120
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 30.6 bits (70), Expect = 1.0
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 207 MMACKAYRDYAREEKGISLP--EIVLPTTAH---PAFDKAANYFGMKVKHIRLTSSYTVD 261
++ +AY E++G +++P +AH PA A+ G +V+ I VD
Sbjct: 140 ILIIRAYH----EDRGEGRTRRVVLVPDSAHGSNPA---TASMAGYQVREIPSGPEGEVD 192
Query: 262 LAALQSAITGNT--VML 276
L AL+ + + +ML
Sbjct: 193 LEALKRELGPHVAALML 209
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG
BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Length = 141
Score = 29.6 bits (67), Expect = 1.1
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 192 PETCGCMTSGGTESIMMACKAYRDYAREEKGISLPE 227
+G + +M +Y+ +G
Sbjct: 44 DTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTI 79
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 30.6 bits (70), Expect = 1.1
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 258 YTVDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPV 305
+ L ++ + G T ++ + PN P G + + + +L +K +
Sbjct: 160 FQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYI 210
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 29.9 bits (67), Expect = 1.7
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 214 RDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMK 248
Y RE + ++L + V TA P A FG
Sbjct: 386 GRYVREARLMTLEQAVARMTALP-----ARVFGFA 415
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 29.5 bits (67), Expect = 2.2
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 287 TMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAA---GYPLPPFDFSLPGVTSISVDT 343
T ++ I+ +++G+ + +D G A SA L D + +
Sbjct: 162 TKQELEDISASCKEHGLYLFLD---G---ARLASALSSPVNDLTLADIAR-LTDMFYIGA 214
Query: 344 HKYGFTPKGSSVVLYRDLK 362
K G + ++L LK
Sbjct: 215 TKAGGMFGEALIILNDALK 233
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate,
beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces
cerevisiae} SCOP: c.79.1.1
Length = 514
Score = 29.7 bits (67), Expect = 2.2
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 209 ACKAYRDYAREEKGISLPEIVLPTTAHPA 237
A ++ S+ I L +TAHPA
Sbjct: 426 GVCATERLIAKDNDKSIQYISL-STAHPA 453
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine;
1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Length = 310
Score = 29.5 bits (67), Expect = 2.2
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 192 PETCGCMTSGGTESIMMACKAYRDYAREEKGISLPE 227
+ T+G ESI+ A E+G ++ E
Sbjct: 213 NDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEE 248
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 29.5 bits (67), Expect = 2.3
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 238 FDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
K + G+ A + + NT ++ P + D+ AI
Sbjct: 138 CSKILSKLGVTTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAA 192
Query: 298 GEKY--GIPVHVD 308
+ +D
Sbjct: 193 VRSVVPDAIIMID 205
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 29.0 bits (66), Expect = 2.8
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 26/91 (28%)
Query: 202 GTESIMMACKAYRDYAREEKGISL--PEIVLPTTAHPAF-------------DKAANYFG 246
G E++ A K R +A + K + EI+ F ++ FG
Sbjct: 102 GAEAVETAIKTARRWAYDVKKVEANRAEII---VCEDNFHGRTMGAVSMSSNEEYKRGFG 158
Query: 247 MKV---KHIRLTSSYTVDLAALQSAITGNTV 274
+ I DL AL++AIT NT
Sbjct: 159 PMLPGIIVIPYG-----DLEALKAAITPNTA 184
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta
alpha, sandwich, hydrolase; 1.90A {Elizabethkingia
meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A
9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A*
2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Length = 295
Score = 29.0 bits (65), Expect = 2.9
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 193 ETCGCMTSGGTESIMMACKAYRDYAREEKGISLPE 227
E +G E ++ + +G + +
Sbjct: 196 EIGAATATGHGEEVIRTVGTHLVVELMNQGRTPQQ 230
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 29.2 bits (65), Expect = 3.1
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 213 YRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMK 248
Y+R+ L V T A FG+
Sbjct: 399 LGHYSRDLGLFPLETAVWKMTGLT-----AAKFGLA 429
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 28.6 bits (65), Expect = 3.9
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 258 YTVDLAALQSAITGNTVMLVGSMPNFPYG---TMDDIGAIAKLGEKYGIPVHVD 308
+ V ++ AIT T +LV + P+ P G T D++ AIA++ + G+ V D
Sbjct: 149 FKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD 202
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2,
protein structure initiative, joint center structural
genomics, JCSG; 2.46A {Thermotoga maritima} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 380
Score = 28.4 bits (64), Expect = 5.4
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 277 VGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVD 308
+ NFP I L EKYGI V V+
Sbjct: 167 IIDPRNFPL---SQIPLANLLKEKYGIEVWVE 195
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 28.3 bits (64), Expect = 5.5
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 228 IVLPTTAHPAFDKAANYFGMKVKHIRLTSS---YTVDLAALQSAITGNTV-MLVGSMPNF 283
+V+ T A+ AF KA V + L + D+ L++ + +++ P
Sbjct: 114 VVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQN 173
Query: 284 PYG---TMDDIGAIAKLGEKYGIPV-----HVDCCLGG 313
P G T D++ +A L E++G+ V H+D G
Sbjct: 174 PTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGE 211
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 28.3 bits (64), Expect = 6.1
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 27/93 (29%)
Query: 202 GTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAF-------------DKAANYFGMK 248
GTESI A K R YA KG+ + + +F +K F
Sbjct: 102 GTESIEGAMKTARKYAFN-KGVKGGQFI---AFKHSFHGRTLGALSLTANEKYQKPFKPL 157
Query: 249 V---KHIRLTSSYTVDLAALQSAITGNT--VML 276
+ K + D+++++ + T ++L
Sbjct: 158 ISGVKFAKYN-----DISSVEKLVNEKTCAIIL 185
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 27.8 bits (63), Expect = 6.4
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 27/93 (29%)
Query: 202 GTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAF-------------DKAANYFGMK 248
GTES+ A K R Y R+ KG + + + + +F K F
Sbjct: 95 GTESVEAAIKLARKYWRD-KGKNKWKFI---SFENSFHGRTYGSLSATGQPKFHKGFEPL 150
Query: 249 V---KHIRLTSSYTVDLAALQSAITGNT--VML 276
V + +L D+ ++ + T +++
Sbjct: 151 VPGFSYAKLN-----DIDSVYKLLDEETAGIII 178
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 27.9 bits (63), Expect = 6.6
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 27/93 (29%)
Query: 202 GTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAF-------------DKAANYFGMK 248
GTE+ A K R Y ++ K I+ +AH +F K F
Sbjct: 106 GTEANEAAIKIARKYGKK-KSEKKYRIL---SAHNSFHGRTLGSLTATGQPKYQKPFEPL 161
Query: 249 V---KHIRLTSSYTVDLAALQSAITGNT--VML 276
V ++ ++ L+ ++ + V L
Sbjct: 162 VPGFEYFEFN-----NVEDLRRKMSEDVCAVFL 189
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.2 bits (63), Expect = 6.7
Identities = 11/64 (17%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 53 DTDSLTGKLKKRVFKLARKIPAVRKKLEEETGKVAKLFQDDIKQNNAGLEYFLELPSQGR 112
+T+ L +LK++ L + + +++ ++ ++ + + + + LE L+L + R
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE--LDL-NDER 1076
Query: 113 NRLE 116
R +
Sbjct: 1077 LRYQ 1080
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 28.3 bits (63), Expect = 6.8
Identities = 27/141 (19%), Positives = 43/141 (30%), Gaps = 28/141 (19%)
Query: 128 GHY-DWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFPGVCKMEAEVIKMCAR 186
G Y + G + YY +D D V + N L + V
Sbjct: 177 GSYLWSQDGEI---RSYYHRDWFDY-DAVKDNVTDKNELRQALEDSVKS----------H 222
Query: 187 MFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFD------- 239
+ + P G + SGG +S +++ + AR + E P A
Sbjct: 223 LMSDVP--YGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDL 280
Query: 240 ----KAANYFGMKVKHIRLTS 256
+ AN+ G I T
Sbjct: 281 KAAQEVANHLGTVHHEIHFTV 301
>2gez_B L-asparaginase beta subunit; isoaspartyl aminopeptidase,
NTN-hydrolase, autoproteolysis, taspase, sodium binding,
hydrolase; 2.60A {Lupinus luteus}
Length = 133
Score = 26.9 bits (60), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 193 ETCGCMTSGGTESIMMACKAYRDYAR-EEKGISLPE 227
E C +G E I+ A A A E KG+SL E
Sbjct: 44 ELCAVSATGKGEEIIRATVARDVAALMEFKGLSLKE 79
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase,
autoprot precursor, hydrolase; 1.95A {Escherichia coli}
PDB: 2zak_A
Length = 320
Score = 27.7 bits (62), Expect = 7.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 193 ETCGCMTSGGTESIMMACKAYRDYAR-EEKGISLPE 227
+ +G E + A AY A + G+SL E
Sbjct: 222 ASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAE 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,000,476
Number of extensions: 439333
Number of successful extensions: 1384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 133
Length of query: 435
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 339
Effective length of database: 4,021,377
Effective search space: 1363246803
Effective search space used: 1363246803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)