RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10210
(435 letters)
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 211 bits (538), Expect = 3e-64
Identities = 61/338 (18%), Positives = 127/338 (37%), Gaps = 24/338 (7%)
Query: 106 ELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPL 165
P +++++ L + + + + +++ L+ N +
Sbjct: 29 RFPLHEMRDDVAFQIINDELYLDG-NARQNLATFCQTWDDENVHKLMDLSIN----KNWI 83
Query: 166 HPDIFPGVCKMEAEVIKMCARMFNG----GPETCGCMTSGGTESIMMACKAYRDYARE-- 219
+ +P ++ + M A +++ + G T G +E+ M+ A + R+
Sbjct: 84 DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 143
Query: 220 --EKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTS-SYTVDLAALQSAITGNTVML 276
+ ++ + K A Y+ ++++ I + +D + A NT+ +
Sbjct: 144 EAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGV 203
Query: 277 VGSMPNFPYGTMD------DIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFD 330
V + G + D + I +H+D GGFLAPF+ P +D
Sbjct: 204 VPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV----APDIVWD 259
Query: 331 FSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSG 390
F LP V SIS HK+G P G V++RD + + D+ GG G+ +++ SR
Sbjct: 260 FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA 319
Query: 391 GIIATCWAAMMYFGFEAQVWICVRYHFNYKSCLQNLSD 428
G + + + G E + + ++
Sbjct: 320 GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 357
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 172 bits (435), Expect = 2e-49
Identities = 36/340 (10%), Positives = 83/340 (24%), Gaps = 40/340 (11%)
Query: 106 ELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNPL 165
+ P G + + + ++ G + L+ +
Sbjct: 18 KCPEDGWDESTLELFLHELAVMDSNNFLGN--CGVGEREGRVASALVARRHYRFIHGIGR 75
Query: 166 HPDIFP---------GVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDY 216
DI + K+ ++ ++ + T + C +
Sbjct: 76 SGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRH 135
Query: 217 AREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRL---TSSYTVDLAALQSA----I 269
R + I+ P + K+ G + I DL A+++
Sbjct: 136 KRPKA----KYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG 191
Query: 270 TGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPF 329
+ + L + F D + +A + Y IP V+ G + M L
Sbjct: 192 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCM-----HLIQQ 246
Query: 330 DFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRS 389
+ + + K P G +++ + + + S
Sbjct: 247 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR-------------AS 293
Query: 390 GGIIATCWAAMMYFGFEAQVWICVRYHFNYKSCLQNLSDL 429
++ G + + L L
Sbjct: 294 ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKL 333
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 145 bits (365), Expect = 2e-39
Identities = 53/372 (14%), Positives = 116/372 (31%), Gaps = 45/372 (12%)
Query: 75 VRKKLEEETGKVAKLFQDDIKQNNAGLEYFLELPSQGRNRLEILELVSNYLARGHYDWKH 134
+ + + K +L ++ + + ++P G + +I +
Sbjct: 6 IEGLIPKNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPK 65
Query: 135 GRVSGAVYYYQQDLVDLLTEVFGLTSYTNPLHPDIFP---------GVCKMEAEVIKMCA 185
G + E+ + ++ + + ++++
Sbjct: 66 SVRIGEREAR--TYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFF 123
Query: 186 RMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYF 245
+ G SI + A R I P +H + KA ++
Sbjct: 124 KQL-GLNVHAIATPISTGMSISLCLSAARKKYGSNVVI------YPYASHKSPIKAVSFV 176
Query: 246 GMKVKHIRL---TSSYTVDLAALQSAI-----TGNTVMLVGSMPNFPYGTMDDIGAIAKL 297
GM ++ + V + +++AI GN ++ ++ FP DDI IAK+
Sbjct: 177 GMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKI 236
Query: 298 GEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVL 357
E Y IP ++ ++ F + V ++ + K TP G +V
Sbjct: 237 CENYDIPHIINGAYAIQNNYYL---EKLKKAFKY---RVDAVVSSSDKNLLTPIGGGLVY 290
Query: 358 YRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRYHF 417
D ++ S S G S + +++ G + + +
Sbjct: 291 STDAEFIK-------------EISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKN 337
Query: 418 NYKSCLQNLSDL 429
+ K + L+DL
Sbjct: 338 SKKLLDELLNDL 349
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 141 bits (355), Expect = 9e-38
Identities = 44/367 (11%), Positives = 105/367 (28%), Gaps = 44/367 (11%)
Query: 105 LELPSQGRNRLEILELVSNYLARGHYDWKHGRVSGAVYYYQQDLVDLLTEVFGLTSYTNP 164
P + +IL+ V + G W + +L ++
Sbjct: 44 ATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAY-FPTASSYPAMLADMLCGAIGCIG 102
Query: 165 LHPDIFPGVCKMEAEVIKMCARMF--------NGGPETCGCMTSGGTESIMMACKAYRDY 216
P ++E ++ +M E G + +E+ ++A A R
Sbjct: 103 FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK 162
Query: 217 A-----------REEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAAL 265
+ + AH + ++A G+K+K I + + +AL
Sbjct: 163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASAL 222
Query: 266 QSAITGNT------VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFM 319
Q A+ + +V ++ + D++ + + + I +HVD G
Sbjct: 223 QEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICP 282
Query: 320 SAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGN- 378
+ S + + HK+ S + + + + + +
Sbjct: 283 EFR-----HLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSH 337
Query: 379 --------YGSPSVSGSRSGGIIATCWAAMMYF---GFEAQVWICVRYHFNYKSCLQNLS 427
Y + R + W + G +A + V+ +++ +
Sbjct: 338 QGSGLITDYRHWQLPLGRRFRSLK-MWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDP 396
Query: 428 DLWLYLP 434
+
Sbjct: 397 RFEVCAE 403
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 65.0 bits (157), Expect = 4e-12
Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 16/251 (6%)
Query: 185 ARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANY 244
A + P TSG TES +A K ++ ++KG + A +
Sbjct: 58 ADLVGADPREI-VFTSGATESDNLAIKGAANF-YQKKGKHIITSKTEHKAVLDTCRQLER 115
Query: 245 FGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIP 304
G +V ++ + +DL L++A+ +T+++ N G + DI AI ++ GI
Sbjct: 116 EGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGII 175
Query: 305 VHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYK 364
HVD P D S V +S HK ++ + R + +
Sbjct: 176 YHVDAT-----------QSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVR 224
Query: 365 HCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRYHFNYKSCLQ 424
G G A A ++ +N ++
Sbjct: 225 IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNG---IK 281
Query: 425 NLSDLWLYLPW 435
++ +++L
Sbjct: 282 DIEEVYLNGDL 292
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 60.3 bits (145), Expect = 2e-10
Identities = 28/242 (11%), Positives = 61/242 (25%), Gaps = 32/242 (13%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTA-HPAFDKAANYFGMKVKHI----- 252
T G + + +EKG+ ++V + + G V+++
Sbjct: 95 THQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEA 154
Query: 253 -----RLTSSYTVDLAALQSAITGNTVMLVGSMPNFP--------YGTMDDIGAIAKLGE 299
R DL L+ I V + ++ ++ A+ + +
Sbjct: 155 FDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK 214
Query: 300 KYGIPVHVDCCL------GGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGS 353
KY IPV +D + +++ K P G
Sbjct: 215 KYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGG 274
Query: 354 SVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICV 413
+ + D + GG+ + ++ +
Sbjct: 275 LLCMKDDSFFDVYTE-------CRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327
Query: 414 RY 415
Y
Sbjct: 328 AY 329
>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 366
Score = 54.1 bits (129), Expect = 1e-08
Identities = 18/161 (11%), Positives = 48/161 (29%), Gaps = 18/161 (11%)
Query: 168 DIFPGVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPE 227
+ + G +V + + G + + +I+ A + K +
Sbjct: 43 NTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-----KPKKVIH-- 95
Query: 228 IVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVM-LVGSMPNFPYG 286
+ HP+ +++ K + + + + I +T++ + GS +
Sbjct: 96 YLPELPGHPSIERSCKIVNAK--YFESD-----KVGEILNKIDKDTLVIITGSTMDLKVI 148
Query: 287 TMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLP 327
+++ + + V VD A P
Sbjct: 149 ELENFKKVINTAKNKEAIVFVDD---ASGARVRLLFNQPPA 186
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 52.9 bits (126), Expect = 4e-08
Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 28/237 (11%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFD--KAANYFGMKVKHIRLTS 256
T G + + + + + ++ T H + + + L
Sbjct: 96 THQGRGAENLLSQLAI---KPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNL 152
Query: 257 SYT--VDLAALQSAITGNT--------VMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVH 306
+ +DL L + I + + ++ +M ++ A+ ++ YGI +
Sbjct: 153 PFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIF 212
Query: 307 VDCC--LGGFLAPFMSAAGYP------LPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLY 358
D + AGY + FS ++S K G + +
Sbjct: 213 YDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMS--GKKDCLVNIGGFLCMN 270
Query: 359 RDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRY 415
+ + + V +YG + + +A M + + VRY
Sbjct: 271 DEEMFSAAKELVVVYEGMPSYGGLAGRDMEA---MAIGLREAMQYEYIEHRVKQVRY 324
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 51.1 bits (121), Expect = 1e-07
Identities = 30/248 (12%), Positives = 65/248 (26%), Gaps = 32/248 (12%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHI------ 252
G + + Y ++++G + + + G K +I
Sbjct: 96 AHQGRGAENILFPVLLKY-KQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAF 154
Query: 253 ----RLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYG--------TMDDIGAIAKLGEK 300
D+ L+ I + + ++ + +M ++ + ++ ++
Sbjct: 155 DSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ 214
Query: 301 YGIPVHVDCCLGGFLAPF-----MSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSV 355
+GI V +D A F + F + + K +
Sbjct: 215 HGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGL 274
Query: 356 VLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRY 415
V RD + P GG+ AAM+ E + Y
Sbjct: 275 VAIRDNEEIFT--------LARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHY 326
Query: 416 HFNYKSCL 423
L
Sbjct: 327 RIGQVKYL 334
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 50.1 bits (119), Expect = 2e-07
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 177 EAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHP 236
EA K +T GG++++ +A D E +++ +
Sbjct: 75 EALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDE--------VIVLSPYWV 126
Query: 237 AFDKAANYFGMKVKHIRLTSSYT--VDLAALQSAITGNTVMLVGSMPNFPYGTM---DDI 291
++ + + G V + D ++ AIT T LV + PN P G + + +
Sbjct: 127 SYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVL 186
Query: 292 GAIAKLGEKYGIPVHVDCCLGGFL 315
A+A+L ++ + D L
Sbjct: 187 EALARLAVEHDFYLVSDEIYEHLL 210
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 48.9 bits (116), Expect = 6e-07
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 198 MTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSS 257
G T+ I + ++V +P F + YF K
Sbjct: 128 FGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG--- 184
Query: 258 YTVDLAALQSAITGNTVMLVGSMPNFPYGTM 288
+ A + + + + PN P G +
Sbjct: 185 ---NAANYVNVSNPEQYIEMVTSPNNPEGLL 212
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 41.1 bits (95), Expect = 2e-04
Identities = 38/222 (17%), Positives = 60/222 (27%), Gaps = 18/222 (8%)
Query: 198 MTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSS 257
S T + +A A +E I T + V +
Sbjct: 51 AVSSATAGMHIALMALGIGEGDEV------ITPSMTWVSTLNMIVLLGANPVMVDVDRDT 104
Query: 258 YTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAP 317
V +++AIT T + +P G D+ AI LGE+YGIPV D
Sbjct: 105 LMVTPEHIEAAITPQTKAI---IPVHYAGAPADLDAIYALGERYGIPVIEDAA------- 154
Query: 318 FMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGG 377
A G G S K +G VV +
Sbjct: 155 --HATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD 212
Query: 378 NYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRYHFNY 419
+ S + ++A + + A ++
Sbjct: 213 AWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDAL 254
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 36.7 bits (83), Expect = 0.004
Identities = 27/269 (10%), Positives = 67/269 (24%), Gaps = 23/269 (8%)
Query: 175 KMEAEVIKMCARMFNGGP-ETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLPTT 233
+ ++ + + T + G+ ++ + + +S
Sbjct: 33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMV 92
Query: 234 AHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGA 293
A++ + R + I+ ++ G ++ I
Sbjct: 93 EMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHS----ETTTGMLNPIDE 148
Query: 294 IAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGS 353
+ L +YG VD + + P D + + + +K G
Sbjct: 149 VGALAHRYGKTYIVDA-----------MSSFGGIPMDIAALHIDYLISSANKCIQGVPGF 197
Query: 354 SVVLYRDLKYKHCQYFVTS-------DWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFE 406
+ V+ R+ K C+ S W + + A+ E
Sbjct: 198 AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKE 257
Query: 407 AQVWICVRYHFNYKSCLQNLSDLWLYLPW 435
V + + + L +
Sbjct: 258 GGVAARHQRYQQNQRSLVAGMRALGFNTL 286
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 33.3 bits (74), Expect = 0.054
Identities = 27/268 (10%), Positives = 57/268 (21%), Gaps = 21/268 (7%)
Query: 172 GVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLP 231
G ++ A+V + +F + + GT + + A I
Sbjct: 35 GTDELTAQVKRKFCEIF--ERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINND 92
Query: 232 TTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMD-- 289
P F + + +T
Sbjct: 93 ECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY 152
Query: 290 ---DIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKY 346
+I AI + + + +H+D + + P GV ++S K
Sbjct: 153 TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS----PAEMTWKAGVDALSFGATKN 208
Query: 347 GFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFE 406
G + S+ + A A + +
Sbjct: 209 GVLAAE----------AIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWL 258
Query: 407 AQVWICVRYHFNYKSCLQNLSDLWLYLP 434
L+ L + +
Sbjct: 259 RNARKANAAAQRLAQGLEGLGGVEVLGG 286
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 382
Score = 31.2 bits (69), Expect = 0.26
Identities = 25/246 (10%), Positives = 48/246 (19%), Gaps = 19/246 (7%)
Query: 198 MTSGGTESIMMACKAY-RDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTS 256
+ GT + + A + + + + S
Sbjct: 62 LAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGES 121
Query: 257 SYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLA 316
+ S + V + + + + A VD
Sbjct: 122 VPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE 181
Query: 317 PFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPG 376
F GV + K P G S+ L + +
Sbjct: 182 EFEFDE-----------WGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVH 230
Query: 377 GNYGSPSVSGSRSGGIIATCWA-------AMMYFGFEAQVWICVRYHFNYKSCLQNLSDL 429
G + S A A ++ A I + +SD
Sbjct: 231 GYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDW 290
Query: 430 WLYLPW 435
+
Sbjct: 291 FKDSLV 296
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 30.7 bits (67), Expect = 0.34
Identities = 26/263 (9%), Positives = 50/263 (19%), Gaps = 14/263 (5%)
Query: 172 GVCKMEAEVIKMCARMFNGGPETCGCMTSGGTESIMMACKAYRDYAREEKGISLPEIVLP 231
G A+ ++ + P+ SGGT++ ++AC L I
Sbjct: 32 GQDSHCAKAARLIGELL-ERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTH 90
Query: 232 TTAHPAFDKAANYFGMKVKHIRLTSSYTVDLAALQSAITGNTVMLVGSMPNFPYGTMDDI 291
T + L +S ++ S
Sbjct: 91 ETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYT-- 148
Query: 292 GAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPK 351
E I A P + + D G T
Sbjct: 149 -----KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA 203
Query: 352 GSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWI 411
G + + ++ + +M ++
Sbjct: 204 GGMFGEALIILNDALKPNARHLIKQRGALMAKG------WLLGIQFEVLMKDNLFFELGA 257
Query: 412 CVRYHFNYKSCLQNLSDLWLYLP 434
+ L P
Sbjct: 258 HSNKMAAILKAGLEACGIRLAWP 280
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 29.2 bits (64), Expect = 1.2
Identities = 9/151 (5%), Positives = 24/151 (15%)
Query: 285 YGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTH 344
YGT + G+ V+ D + + S +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQ 137
Query: 345 KYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFG 404
+ Y K++ + +
Sbjct: 138 AWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYD 197
Query: 405 FEAQVWICVRYHFNYKSCLQNLSDLWLYLPW 435
+ + + +
Sbjct: 198 YLMYADLDMDHPEVVTELKSWGKWYVNTTNI 228
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 172
Score = 27.3 bits (60), Expect = 2.3
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 163 NPLHPDIFPGVCKMEAEVIKMCARMFNGGPETCGCMT 199
P+HP+IF + + +++ + +G E C T
Sbjct: 14 TPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 50
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 28.0 bits (61), Expect = 2.5
Identities = 18/147 (12%), Positives = 35/147 (23%), Gaps = 1/147 (0%)
Query: 285 YGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPFMSAAGYPLPPFDFSLPGVTSISVDTH 344
YGT ++ + V+ D L + + + TS
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 345 KYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSVSGSRSGGIIATCWAAMMYFG 404
+ Y D K+ H +F +DW S G ++
Sbjct: 135 AWTDFRFPGRGNTYSDFKW-HWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNY 193
Query: 405 FEAQVWICVRYHFNYKSCLQNLSDLWL 431
H + + + +
Sbjct: 194 DYLMYADVDYDHPDVVAETKKWGIWYA 220
>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium
adolescentis [TaxId: 1680]}
Length = 434
Score = 27.8 bits (60), Expect = 2.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 47 FSRDPFDTDSLTGKLKKRVFKLARKIPAVRKKLE 80
+R + T + LK+ V K + R +L+
Sbjct: 401 INRHYYSTAEIDENLKRPVVKALNALAKFRNELD 434
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 27.9 bits (60), Expect = 3.0
Identities = 27/221 (12%), Positives = 56/221 (25%), Gaps = 15/221 (6%)
Query: 199 TSGGTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSY 258
T+G E+ + A +
Sbjct: 68 TNGAREAKFAVMHSLAKKDAWVVMDENCHYSSY-VAAERAGLNIALVPKTDYPDYAITPE 126
Query: 259 TVDLAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFLAPF 318
++ G V+ + + P+ YG + D+ IAK+ +Y +P+ V+ +
Sbjct: 127 NFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGA---YAIGR 183
Query: 319 MSAAGYPLPPFDFSLPGVTSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGN 378
M + + G G V+ K + + + N
Sbjct: 184 MPVSLKEIGADFIVGSG---------HKSMAASGPIGVMGM--KEEWAEIVLRRSEKYKN 232
Query: 379 YGSPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRYHFNY 419
+ + G I T A+ + + W
Sbjct: 233 KEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARR 273
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common
tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 398
Score = 27.5 bits (60), Expect = 3.8
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 275 MLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFL 315
+ P P+ DI ++KL + G V +D L
Sbjct: 156 LFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPL 196
>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
virus [TaxId: 11099]}
Length = 588
Score = 27.5 bits (61), Expect = 4.2
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 10/71 (14%)
Query: 349 TPKGSSVVLYRDLKYKHCQ----YFVTSDWPGGN--YGSPSVSGSRSGGIIATCWAAM-- 400
K V+ Y + K + Y P Y + W +
Sbjct: 189 VEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGYEG-KTPLFNIFDKVRKEWDSFNE 247
Query: 401 -MYFGFEAQVW 410
+ F+ + W
Sbjct: 248 PVAVSFDTKAW 258
>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase,
catalytic domain {Alcaligenes faecalis [TaxId: 511]}
Length = 358
Score = 27.1 bits (59), Expect = 4.2
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 5/35 (14%)
Query: 214 RDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMK 248
Y+R+ L V T A FG+
Sbjct: 326 GHYSRDLGLFPLETAVWKMTGLT-----AAKFGLA 355
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 27.3 bits (59), Expect = 4.6
Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 281 PNFPYGTMDDIGAIAKLGEKYGIPVHVD----CCLGGFLAPFMSAAGYPLPPFDFSLPGV 336
+GTM+D + + + + +D S D+ +
Sbjct: 71 IMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRP 130
Query: 337 TSISVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSV 384
+ + +G GS+ + F + P N+ + V
Sbjct: 131 GKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLF-SKKQPDLNWDNEKV 177
>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable
domain, VL-lambda {Human (Homo sapiens), cluster 2
[TaxId: 9606]}
Length = 114
Score = 25.4 bits (55), Expect = 6.9
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 381 SPSVSGSRSGGIIATCWAAMMYFGFEAQVWICVRYHFNYKSCLQNLSDLWLYLP 434
PS SG+ + +C + G + +W K + L +
Sbjct: 7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVS 60
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 26.4 bits (57), Expect = 7.4
Identities = 13/114 (11%), Positives = 31/114 (27%)
Query: 202 GTESIMMACKAYRDYAREEKGISLPEIVLPTTAHPAFDKAANYFGMKVKHIRLTSSYTVD 261
G ++ + + E + + R +
Sbjct: 97 GYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTH 156
Query: 262 LAALQSAITGNTVMLVGSMPNFPYGTMDDIGAIAKLGEKYGIPVHVDCCLGGFL 315
LA L ++ M+V G + I ++ +++ + VD G +
Sbjct: 157 LARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGV 210
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 403
Score = 26.4 bits (57), Expect = 7.6
Identities = 19/164 (11%), Positives = 39/164 (23%), Gaps = 15/164 (9%)
Query: 285 YGTMDDIGAIAKLGEKYGIPVHVD-----CCLGGFLAPFMSAAGYPLPPFDFSLPGVTSI 339
G ++ + G+ ++VD C G A + G P + P V
Sbjct: 73 SGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYS 132
Query: 340 SVDTHKYGFTPKGSSVVLYRDLKYKHCQYFVTSDWPGGNYGSPSV--------SGSRSGG 391
+ D + + Y D V + G
Sbjct: 133 AWDFNDGKCKTASGGIESYNDPYQVRDCQL--VGLLDLALEKDYVRSMIADYLNKLIDIG 190
Query: 392 IIATCWAAMMYFGFEAQVWICVRYHFNYKSCLQNLSDLWLYLPW 435
+ A + + + H + S +++
Sbjct: 191 VAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEV 234
>d1t0tv_ d.58.4.10 (V:) YwfI homologue {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 243
Score = 26.0 bits (57), Expect = 8.5
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 73 PAVRKKLEEETGKVAKLFQDDIKQN 97
R++L G + + + Q
Sbjct: 156 MEQRRELMRAHGMTGRKYAGKVTQI 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,720,093
Number of extensions: 83506
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 33
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)