BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10214
(415 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350397326|ref|XP_003484842.1| PREDICTED: hypothetical protein LOC100745114 [Bombus impatiens]
Length = 270
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 135/279 (48%), Positives = 156/279 (55%), Gaps = 46/279 (16%)
Query: 154 LQSCLQVLTKEDE--------VS--TTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF 203
Q CL +L +DE VS T++K+E + E++Q TL+F+DLARQMEAFFLQKRF
Sbjct: 19 FQQCLSILITKDEGLGNNGIGVSGGLTVDKEEARSEVEQVTLRFIDLARQMEAFFLQKRF 78
Query: 204 LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQGSTS 263
LLSALKPEL++KEDI DLR +LARKE+LIKRHYDKI VWQNLL+DLQGWAKSPA QG
Sbjct: 79 LLSALKPELVIKEDINDLRVELARKEDLIKRHYDKITVWQNLLADLQGWAKSPA-QGP-- 135
Query: 264 SASGTTPPNSTP--TQSGPG-ISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQM 320
PN P TQ+G SA GG M + Q Q Q Q
Sbjct: 136 ------APNGLPNGTQTGQNQQSANGGGNATMQ--QQQQILQHQQQLQQQQQQLQHLQQH 187
Query: 321 QQQIHMQHMQQQGMGPGGPPSG---PGGPSSGM--MFMGPGGPRGGGNAGPPPFPSAGPG 375
Q Q H QQ G G PP+ G S G MFM GG G G FP AG G
Sbjct: 188 QMQQQQLHQQQVQQGSGAPPTSGLQGVGVSVGQQGMFMTQGGVSVTGTRG--GFPVAGVG 245
Query: 376 GMGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIGLPDGR 414
LQGPLA+LEKTTSNIG+P+ R
Sbjct: 246 SSA---------------LQGPLAFLEKTTSNIGMPERR 269
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 74/86 (86%), Gaps = 6/86 (6%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
++K+E + E++Q TL+F+DLARQMEAFFLQKRFLLSALKPEL++KE DI DLR +
Sbjct: 46 VDKEEARSEVEQVTLRFIDLARQMEAFFLQKRFLLSALKPELVIKE------DINDLRVE 99
Query: 130 LARKEELIKRHYDKIAVWQNLLSDLQ 155
LARKE+LIKRHYDKI VWQNLL+DLQ
Sbjct: 100 LARKEDLIKRHYDKITVWQNLLADLQ 125
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 33/65 (50%), Gaps = 17/65 (26%)
Query: 2 MFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIGL 61
MFM GG G G FP AG G LQGPLA+LEKTTSNIG+
Sbjct: 223 MFMTQGGVSVTGTRGG--FPVAGVGSSA---------------LQGPLAFLEKTTSNIGM 265
Query: 62 PDGRS 66
P+ RS
Sbjct: 266 PERRS 270
>gi|332029089|gb|EGI69103.1| Mediator of RNA polymerase II transcription subunit 28 [Acromyrmex
echinatior]
Length = 274
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/277 (47%), Positives = 162/277 (58%), Gaps = 38/277 (13%)
Query: 154 LQSCLQVLTKEDEVST---------TLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
Q CL +LTK++ + T++KDE + EI+QAT++F+DLARQMEA+FLQKRFL
Sbjct: 19 FQQCLSILTKDEGLGNSGTGASGGLTVDKDEGRAEIEQATMRFIDLARQMEAYFLQKRFL 78
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQGSTSS 264
LSALKPE++VKE+I +L+ +LARKEELIKRH DKIAVWQN+LSDLQGWA+SPA QG S
Sbjct: 79 LSALKPEMLVKEEINELKLELARKEELIKRHNDKIAVWQNMLSDLQGWAQSPA-QGPAPS 137
Query: 265 A--SGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQMQQ 322
+G + G G ++M + Q PQ QQQ+Q Q
Sbjct: 138 GLPNGNQSGQNQQATGGSGNASMQQQQQILQHQQQLQQQLQQQQQQQQHPQLQQQLQQQM 197
Query: 323 QIHMQHMQQQGMGPGGPPS----GPGGPSSGM-MFMGPGGPRGGGNAGPPPFPSAGPGGM 377
Q +Q QQ G GGPP+ G G P + MFM GG GG A P GGM
Sbjct: 198 QHPLQSQVQQ--GSGGPPTSGLQGVGVPVNQQGMFMTQGGV--GGRATGFPV-----GGM 248
Query: 378 GGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIGLPDGR 414
G LQGPLAYLEKTTSNIG+P+ R
Sbjct: 249 GSSA------------LQGPLAYLEKTTSNIGMPERR 273
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 76/90 (84%), Gaps = 6/90 (6%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
++KDE + EI+QAT++F+DLARQMEA+FLQKRFLLSALKPE++VKE +I +L+ +
Sbjct: 45 VDKDEGRAEIEQATMRFIDLARQMEAYFLQKRFLLSALKPEMLVKE------EINELKLE 98
Query: 130 LARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159
LARKEELIKRH DKIAVWQN+LSDLQ Q
Sbjct: 99 LARKEELIKRHNDKIAVWQNMLSDLQGWAQ 128
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 26 GGMGGPGNLGP-GGMGPGGLLQGPLAYLEKTTSNIGLPDGRS 66
GG+GG P GGMG L QGPLAYLEKTTSNIG+P+ RS
Sbjct: 234 GGVGGRATGFPVGGMGSSAL-QGPLAYLEKTTSNIGMPERRS 274
>gi|383847953|ref|XP_003699617.1| PREDICTED: uncharacterized protein LOC100877461 [Megachile
rotundata]
Length = 266
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 156/284 (54%), Gaps = 60/284 (21%)
Query: 154 LQSCLQVLTKEDE------VSTT----LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF 203
Q CL +L +DE + T ++K+E + E++Q TL+F+DLARQMEAFFLQKRF
Sbjct: 19 FQQCLSILITKDEGLGNNGIGVTGGLIVDKEEARSEVEQVTLRFIDLARQMEAFFLQKRF 78
Query: 204 LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQGSTS 263
LLSALKPEL+VKEDI DLR +LARKE+LIKRHYDKI VWQNLL+DLQGWAKSPA QG
Sbjct: 79 LLSALKPELVVKEDISDLRVELARKEDLIKRHYDKITVWQNLLADLQGWAKSPA-QGP-- 135
Query: 264 SASGTTPPNSTP--TQSGPGISAMGGPLPGMMGGMAPI----VPGSTMQPMSGMPQQQQQ 317
PN P TQSG G GG A I Q + Q Q Q
Sbjct: 136 ------APNGLPNGTQSGQNQQTTNG------GGNATIQQQQQMLQHQQQLQQQQQLQHQ 183
Query: 318 VQMQQQIHMQHMQQQGMGPGGPPSG---PGGPSSGM--MFMGPG--GPRGGGNAGPPPFP 370
+Q Q Q H QQ G G PP+ G S G MFM G G R G FP
Sbjct: 184 MQHQMQQQQLHQQQVQQGSGAPPTSGLQGVGVSVGQQGMFMTQGVTGARAG-------FP 236
Query: 371 SAGPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIGLPDGR 414
G G LQGPLA+LEKTTSNIG+P+ R
Sbjct: 237 VGGVGSSA---------------LQGPLAFLEKTTSNIGMPERR 265
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 74/86 (86%), Gaps = 6/86 (6%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
++K+E + E++Q TL+F+DLARQMEAFFLQKRFLLSALKPEL+VKE DI DLR +
Sbjct: 46 VDKEEARSEVEQVTLRFIDLARQMEAFFLQKRFLLSALKPELVVKE------DISDLRVE 99
Query: 130 LARKEELIKRHYDKIAVWQNLLSDLQ 155
LARKE+LIKRHYDKI VWQNLL+DLQ
Sbjct: 100 LARKEDLIKRHYDKITVWQNLLADLQ 125
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
Query: 37 GGMGPGGLLQGPLAYLEKTTSNIGLPDGRS 66
GG+G L QGPLA+LEKTTSNIG+P+ RS
Sbjct: 238 GGVGSSAL-QGPLAFLEKTTSNIGMPERRS 266
>gi|189234764|ref|XP_001815546.1| PREDICTED: similar to mediator complex [Tribolium castaneum]
gi|270002198|gb|EEZ98645.1| hypothetical protein TcasGA2_TC001173 [Tribolium castaneum]
Length = 198
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 110/145 (75%), Gaps = 15/145 (10%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
Q CL VLTKE+ V + +KDE+K+E++Q TL+F+DLARQMEAFFLQKRFLLSALKPE+I
Sbjct: 19 FQHCLNVLTKEEAVPNS-DKDEMKVEVEQTTLRFIDLARQMEAFFLQKRFLLSALKPEMI 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQGSTSSASGTTPPNS 273
VKEDI + R +LARK+EL+KRHY+KIAVWQNLL+DLQG+AKSPA QGS +
Sbjct: 78 VKEDINEYRLELARKDELLKRHYEKIAVWQNLLADLQGYAKSPA-QGS-----------A 125
Query: 274 TPTQSGPGISAMGGPLPGMMGGMAP 298
TPT + G ++ P+ G+ G P
Sbjct: 126 TPTLNNGG--SVQSPMAGLPGNQTP 148
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 75/85 (88%), Gaps = 6/85 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+KDE+K+E++Q TL+F+DLARQMEAFFLQKRFLLSALKPE+IVKE DI + R +L
Sbjct: 36 DKDEMKVEVEQTTLRFIDLARQMEAFFLQKRFLLSALKPEMIVKE------DINEYRLEL 89
Query: 131 ARKEELIKRHYDKIAVWQNLLSDLQ 155
ARK+EL+KRHY+KIAVWQNLL+DLQ
Sbjct: 90 ARKDELLKRHYEKIAVWQNLLADLQ 114
>gi|110764402|ref|XP_001122387.1| PREDICTED: hypothetical protein LOC726666 [Apis mellifera]
Length = 260
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 130/275 (47%), Positives = 149/275 (54%), Gaps = 56/275 (20%)
Query: 154 LQSCLQVLTKEDE--------VS--TTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF 203
Q CL +L +DE VS T++K+E + E++Q TL+F+DLARQMEAFFLQKRF
Sbjct: 19 FQQCLSILITKDEGLGNNGIGVSGGLTVDKEEARSEVEQVTLRFIDLARQMEAFFLQKRF 78
Query: 204 LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQGSTS 263
LLSALKPEL+VKEDI DLR +LARKE+LIKRHYDKI VWQNLL+DLQGWAKSPA QG
Sbjct: 79 LLSALKPELVVKEDINDLRVELARKEDLIKRHYDKITVWQNLLADLQGWAKSPA-QGP-- 135
Query: 264 SASGTTPPNSTP--TQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQMQ 321
PN P TQSG + G G M Q + QQ Q +Q
Sbjct: 136 ------APNGLPNGTQSGQNQQSANG---GGNTTMQQQQQILQHQQLQQQQQQLQHLQQH 186
Query: 322 QQIHMQHMQQQGMGPGGPP-SGPGGPSSGM----MFMGPG-----GPRGGGNAGPPPFPS 371
Q H QQ G G PP SG G + MFM G G R G FP
Sbjct: 187 QMQQQLHQQQVQQGSGAPPTSGLQGVGVAVGQQGMFMTQGAVGVTGTRAG-------FPV 239
Query: 372 AGPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTTS 406
AG G LQGPLA+LEKTTS
Sbjct: 240 AGVG---------------SSTLQGPLAFLEKTTS 259
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 74/86 (86%), Gaps = 6/86 (6%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
++K+E + E++Q TL+F+DLARQMEAFFLQKRFLLSALKPEL+VKE DI DLR +
Sbjct: 46 VDKEEARSEVEQVTLRFIDLARQMEAFFLQKRFLLSALKPELVVKE------DINDLRVE 99
Query: 130 LARKEELIKRHYDKIAVWQNLLSDLQ 155
LARKE+LIKRHYDKI VWQNLL+DLQ
Sbjct: 100 LARKEDLIKRHYDKITVWQNLLADLQ 125
>gi|380024459|ref|XP_003696013.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Apis florea]
Length = 200
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 92/115 (80%), Gaps = 10/115 (8%)
Query: 154 LQSCLQVLTKEDE--------VS--TTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF 203
Q CL +L +DE VS T++K+E + E++Q TL+F+DLARQMEAFFLQKRF
Sbjct: 19 FQQCLSILITKDEGLGNNGIGVSGGLTVDKEEARSEVEQVTLRFIDLARQMEAFFLQKRF 78
Query: 204 LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
LLSALKPEL+VKEDI DLR +LARKE+LIKRHYDKI VWQNLL+DLQGWAKSPA
Sbjct: 79 LLSALKPELVVKEDINDLRVELARKEDLIKRHYDKITVWQNLLADLQGWAKSPAQ 133
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 74/86 (86%), Gaps = 6/86 (6%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
++K+E + E++Q TL+F+DLARQMEAFFLQKRFLLSALKPEL+VKE DI DLR +
Sbjct: 46 VDKEEARSEVEQVTLRFIDLARQMEAFFLQKRFLLSALKPELVVKE------DINDLRVE 99
Query: 130 LARKEELIKRHYDKIAVWQNLLSDLQ 155
LARKE+LIKRHYDKI VWQNLL+DLQ
Sbjct: 100 LARKEDLIKRHYDKITVWQNLLADLQ 125
>gi|307205253|gb|EFN83633.1| Mediator of RNA polymerase II transcription subunit 28
[Harpegnathos saltator]
Length = 201
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 92/114 (80%), Gaps = 9/114 (7%)
Query: 154 LQSCLQVLTKEDEVSTT---------LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
Q CL +LTK++ +S ++KDE + E++Q TL+F+DLARQMEAFFLQKRFL
Sbjct: 19 FQQCLSILTKDEGLSNNGIGISNGVAVDKDEARTEVEQVTLRFIDLARQMEAFFLQKRFL 78
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
LSALKPEL+VKEDI DL+ +L RK+ELIKRHYDKIAVWQ+LL+DLQGWAKSPA
Sbjct: 79 LSALKPELVVKEDINDLKLELGRKDELIKRHYDKIAVWQSLLADLQGWAKSPAQ 132
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 87/115 (75%), Gaps = 13/115 (11%)
Query: 45 LQGPLAYLEK----TTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQK 100
Q L+ L K + + IG+ +G ++ +KDE + E++Q TL+F+DLARQMEAFFLQK
Sbjct: 19 FQQCLSILTKDEGLSNNGIGISNGVAV---DKDEARTEVEQVTLRFIDLARQMEAFFLQK 75
Query: 101 RFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155
RFLLSALKPEL+VKE DI DL+ +L RK+ELIKRHYDKIAVWQ+LL+DLQ
Sbjct: 76 RFLLSALKPELVVKE------DINDLKLELGRKDELIKRHYDKIAVWQSLLADLQ 124
>gi|340725940|ref|XP_003401322.1| PREDICTED: hypothetical protein LOC100643863 [Bombus terrestris]
Length = 270
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 92/115 (80%), Gaps = 10/115 (8%)
Query: 154 LQSCLQVLTKEDE--------VS--TTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF 203
Q CL +L +DE VS T++K+E + E++Q TL+F+DLARQMEAFFLQKRF
Sbjct: 19 FQQCLSILITKDEGLGNNGIGVSGGLTVDKEEARSEVEQVTLRFIDLARQMEAFFLQKRF 78
Query: 204 LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
LLSALKPEL++KEDI DLR +LARKE+LIK+HY+KI VWQNLL+DLQGWAKSPA
Sbjct: 79 LLSALKPELVIKEDINDLRVELARKEDLIKKHYEKITVWQNLLADLQGWAKSPAQ 133
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 74/86 (86%), Gaps = 6/86 (6%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
++K+E + E++Q TL+F+DLARQMEAFFLQKRFLLSALKPEL++KE DI DLR +
Sbjct: 46 VDKEEARSEVEQVTLRFIDLARQMEAFFLQKRFLLSALKPELVIKE------DINDLRVE 99
Query: 130 LARKEELIKRHYDKIAVWQNLLSDLQ 155
LARKE+LIK+HY+KI VWQNLL+DLQ
Sbjct: 100 LARKEDLIKKHYEKITVWQNLLADLQ 125
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 33/65 (50%), Gaps = 17/65 (26%)
Query: 2 MFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIGL 61
MFM GG G G FP AG G LQGPLA+LEKTTSNIG+
Sbjct: 223 MFMTQGGVSVTGTRGG--FPVAGVGSSA---------------LQGPLAFLEKTTSNIGM 265
Query: 62 PDGRS 66
P+ RS
Sbjct: 266 PERRS 270
>gi|242021293|ref|XP_002431079.1| mediator of RNA polymerase II transcription subunit, putative
[Pediculus humanus corporis]
gi|212516328|gb|EEB18341.1| mediator of RNA polymerase II transcription subunit, putative
[Pediculus humanus corporis]
Length = 275
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 98/131 (74%), Gaps = 6/131 (4%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL VLTKE + T ++KDEI +++D LKF+DLARQ+EAFFLQKRFLLSALKPE +
Sbjct: 19 FQSCLNVLTKEGALPT-MDKDEISVDVDHTILKFIDLARQLEAFFLQKRFLLSALKPESV 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL--QGWAKSPAHQGSTSSASGTTPP 271
VKEDI DLR +L RK+ELIKRHY+KI+ WQ LL+DL Q WAKSPA S + +GT P
Sbjct: 78 VKEDINDLRAELNRKDELIKRHYEKISAWQTLLADLQVQSWAKSPAQGSSNTPLAGT--P 135
Query: 272 NSTPTQSGPGI 282
PT S P I
Sbjct: 136 TGAPT-SSPNI 145
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 72/90 (80%), Gaps = 6/90 (6%)
Query: 66 SLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVD 125
+L ++KDEI +++D LKF+DLARQ+EAFFLQKRFLLSALKPE +VKE DI D
Sbjct: 31 ALPTMDKDEISVDVDHTILKFIDLARQLEAFFLQKRFLLSALKPESVVKE------DIND 84
Query: 126 LRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155
LR +L RK+ELIKRHY+KI+ WQ LL+DLQ
Sbjct: 85 LRAELNRKDELIKRHYEKISAWQTLLADLQ 114
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 26/26 (100%)
Query: 40 GPGGLLQGPLAYLEKTTSNIGLPDGR 65
GPGG+LQGPLAYLEKTTSNIG+PDGR
Sbjct: 249 GPGGMLQGPLAYLEKTTSNIGMPDGR 274
>gi|307185667|gb|EFN71589.1| Mediator of RNA polymerase II transcription subunit 28 [Camponotus
floridanus]
Length = 266
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 92/114 (80%), Gaps = 9/114 (7%)
Query: 154 LQSCLQVLTKEDEVST---------TLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
Q CL +L K++ + + T++KDE + E++QAT++F+DLARQMEAFFLQKRFL
Sbjct: 19 FQQCLSMLIKDEGLVSNGTGASGGLTVDKDEGRAEMEQATMRFIDLARQMEAFFLQKRFL 78
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
LSALKPE++VKEDI +LR +LARKEELIKRH +KI VWQN+LSDLQGWA+SPA
Sbjct: 79 LSALKPEMVVKEDIQELRMELARKEELIKRHNEKIVVWQNMLSDLQGWAQSPAQ 132
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 75/90 (83%), Gaps = 6/90 (6%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
++KDE + E++QAT++F+DLARQMEAFFLQKRFLLSALKPE++VKE DI +LR +
Sbjct: 45 VDKDEGRAEMEQATMRFIDLARQMEAFFLQKRFLLSALKPEMVVKE------DIQELRME 98
Query: 130 LARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159
LARKEELIKRH +KI VWQN+LSDLQ Q
Sbjct: 99 LARKEELIKRHNEKIVVWQNMLSDLQGWAQ 128
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
Query: 37 GGMGPGGLLQGPLAYLEKTTSNIGLPDGRS 66
GGMG L QGPLA+LEKTTSNIG+P+ RS
Sbjct: 238 GGMGNSAL-QGPLAFLEKTTSNIGMPERRS 266
>gi|242247003|ref|NP_001156065.1| mediator of RNA polymerase II transcription subunit 28-like
[Acyrthosiphon pisum]
gi|239792182|dbj|BAH72461.1| ACYPI000803 [Acyrthosiphon pisum]
Length = 212
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 93/103 (90%)
Query: 156 SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVK 215
S +++++KE+E + ++K+E++++IDQ T++F+D+ARQ+EAFFLQKRFLLSALKPELIVK
Sbjct: 21 SLIEIISKEEETFSPVDKEEVRVDIDQCTMRFIDIARQLEAFFLQKRFLLSALKPELIVK 80
Query: 216 EDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
EDI +LR +LARK++LI+RHYDKI++WQNLL+DLQ AKSPA
Sbjct: 81 EDISELRLELARKDDLIRRHYDKISIWQNLLADLQQVAKSPAQ 123
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 80/92 (86%), Gaps = 6/92 (6%)
Query: 66 SLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVD 125
+ SP++K+E++++IDQ T++F+D+ARQ+EAFFLQKRFLLSALKPELIVKE DI +
Sbjct: 32 TFSPVDKEEVRVDIDQCTMRFIDIARQLEAFFLQKRFLLSALKPELIVKE------DISE 85
Query: 126 LRHDLARKEELIKRHYDKIAVWQNLLSDLQSC 157
LR +LARK++LI+RHYDKI++WQNLL+DLQ
Sbjct: 86 LRLELARKDDLIRRHYDKISIWQNLLADLQQV 117
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 386 GGMGPGGLLQGPLAYLEKTTSNIGLPDGRR 415
GG PG LLQGPLAYLEKTTSNIG+ DGRR
Sbjct: 183 GGPMPGALLQGPLAYLEKTTSNIGMGDGRR 212
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 25/29 (86%)
Query: 37 GGMGPGGLLQGPLAYLEKTTSNIGLPDGR 65
GG PG LLQGPLAYLEKTTSNIG+ DGR
Sbjct: 183 GGPMPGALLQGPLAYLEKTTSNIGMGDGR 211
>gi|170033012|ref|XP_001844373.1| mediator complex [Culex quinquefasciatus]
gi|167873487|gb|EDS36870.1| mediator complex [Culex quinquefasciatus]
Length = 183
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 91/110 (82%), Gaps = 5/110 (4%)
Query: 149 NLLSDL----QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
NL+ +L QSC+ LTKE E +T ++KDEIKLE+DQ TLKF+DLARQMEAFFLQKRFL
Sbjct: 10 NLVDELEEAFQSCIHALTKE-ESATGIDKDEIKLEVDQTTLKFIDLARQMEAFFLQKRFL 68
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254
LSALKP+L++KE+ DLR ++ARK+ELI++HY+KI W+NLLSD Q + K
Sbjct: 69 LSALKPDLLLKEENFDLRQEIARKDELIRKHYEKIESWKNLLSDQQNYNK 118
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 77/97 (79%), Gaps = 6/97 (6%)
Query: 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMV 119
L S + ++KDEIKLE+DQ TLKF+DLARQMEAFFLQKRFLLSALKP+L++KE N
Sbjct: 25 ALTKEESATGIDKDEIKLEVDQTTLKFIDLARQMEAFFLQKRFLLSALKPDLLLKEENF- 83
Query: 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156
DLR ++ARK+ELI++HY+KI W+NLLSD Q+
Sbjct: 84 -----DLRQEIARKDELIRKHYEKIESWKNLLSDQQN 115
>gi|157134765|ref|XP_001656431.1| mediator complex, subunit, putative [Aedes aegypti]
gi|121957757|sp|Q17P98.1|MED28_AEDAE RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Mediator complex subunit 28
Length = 184
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 91/110 (82%), Gaps = 5/110 (4%)
Query: 149 NLLSDL----QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
NL+ +L QSC+ LTKE E +T ++KDEIKLE+DQ TLKF+DLARQMEAFFLQKRFL
Sbjct: 10 NLVDELEEAFQSCIHALTKE-ESATGVDKDEIKLEVDQTTLKFIDLARQMEAFFLQKRFL 68
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254
LSALKP+L++KE+ DL+ ++ARK+ELI++HY+KI W+NLLSD Q + K
Sbjct: 69 LSALKPDLLLKEENFDLKQEIARKDELIRKHYEKIESWKNLLSDQQNYNK 118
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 77/97 (79%), Gaps = 6/97 (6%)
Query: 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMV 119
L S + ++KDEIKLE+DQ TLKF+DLARQMEAFFLQKRFLLSALKP+L++KE N
Sbjct: 25 ALTKEESATGVDKDEIKLEVDQTTLKFIDLARQMEAFFLQKRFLLSALKPDLLLKEENF- 83
Query: 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156
DL+ ++ARK+ELI++HY+KI W+NLLSD Q+
Sbjct: 84 -----DLKQEIARKDELIRKHYEKIESWKNLLSDQQN 115
>gi|312384233|gb|EFR29003.1| hypothetical protein AND_02384 [Anopheles darlingi]
Length = 256
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 90/110 (81%), Gaps = 5/110 (4%)
Query: 149 NLLSDL----QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
NL+ +L QSC+ LTKE E +T ++KDEIK+E+DQ TLKF+DLARQMEAFFLQKRFL
Sbjct: 10 NLVDELEEAFQSCIHALTKE-ESATGIDKDEIKVEVDQTTLKFIDLARQMEAFFLQKRFL 68
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254
LSALKP+L++KE+ DL+ ++ARK+ELI++HY+KI W+ LLSD Q + K
Sbjct: 69 LSALKPDLLLKEENFDLKQEIARKDELIRKHYEKIETWKQLLSDQQNFNK 118
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 76/97 (78%), Gaps = 6/97 (6%)
Query: 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMV 119
L S + ++KDEIK+E+DQ TLKF+DLARQMEAFFLQKRFLLSALKP+L++KE N
Sbjct: 25 ALTKEESATGIDKDEIKVEVDQTTLKFIDLARQMEAFFLQKRFLLSALKPDLLLKEENF- 83
Query: 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156
DL+ ++ARK+ELI++HY+KI W+ LLSD Q+
Sbjct: 84 -----DLKQEIARKDELIRKHYEKIETWKQLLSDQQN 115
>gi|345487844|ref|XP_003425770.1| PREDICTED: hypothetical protein LOC100679347 [Nasonia vitripennis]
Length = 247
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 8/132 (6%)
Query: 154 LQSCLQVLTKEDE-----VSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
Q CL + KED VS+ ++KDE KLE+DQ TL+F+DLARQ+EAFFLQKRFLLSAL
Sbjct: 19 FQQCLNLFIKEDGLEKNGVSSLVDKDETKLEVDQTTLRFIDLARQVEAFFLQKRFLLSAL 78
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQGSTSSASGT 268
KPEL++KE++ DLR++L RKE+L+K+HY+KI +WQ LL+++ G + G +S
Sbjct: 79 KPELVIKEEVQDLRNELVRKEDLMKKHYEKIQIWQKLLAEMHGGVQ---RNGLANSNQAV 135
Query: 269 TPPNSTPTQSGP 280
P +T + P
Sbjct: 136 QPQVTTNGSNNP 147
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 78/100 (78%), Gaps = 6/100 (6%)
Query: 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMV 119
GL S ++KDE KLE+DQ TL+F+DLARQ+EAFFLQKRFLLSALKPEL++KE
Sbjct: 31 GLEKNGVSSLVDKDETKLEVDQTTLRFIDLARQVEAFFLQKRFLLSALKPELVIKE---- 86
Query: 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159
++ DLR++L RKE+L+K+HY+KI +WQ LL+++ +Q
Sbjct: 87 --EVQDLRNELVRKEDLMKKHYEKIQIWQKLLAEMHGGVQ 124
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 8 GPRGGGNAGPPPFPSAG-PGG-----MGGPGNLGPGGMGPGGL----LQGPLAYLEKTTS 57
GP G GN+ P AG P G M P P G P G+ LQGPLA+LEKTTS
Sbjct: 182 GPSGAGNS--PNIQGAGVPVGPQNVMMNQPNTARPAGF-PVGVNNSPLQGPLAFLEKTTS 238
Query: 58 NIGLPDGRS 66
NIG+P+ RS
Sbjct: 239 NIGMPERRS 247
>gi|347970790|ref|XP_310426.4| AGAP003867-PA [Anopheles gambiae str. PEST]
gi|333466832|gb|EAA06018.5| AGAP003867-PA [Anopheles gambiae str. PEST]
Length = 243
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 89/110 (80%), Gaps = 5/110 (4%)
Query: 149 NLLSDL----QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
NL+ +L QSC+ LTKE E +T ++KDEIK+E+DQ TLKF+DLARQMEAFFLQKRFL
Sbjct: 11 NLVDELEEAFQSCIHALTKE-ESATGIDKDEIKVEVDQTTLKFIDLARQMEAFFLQKRFL 69
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254
LSALKP+L++KE+ DL+ ++ RK+ELI++HY+KI W+ LLSD Q + K
Sbjct: 70 LSALKPDLLLKEENFDLKQEIGRKDELIRKHYEKIESWKQLLSDQQNFNK 119
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 84/131 (64%), Gaps = 17/131 (12%)
Query: 28 MGGPGNLGPGGMGPG--GLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLK 85
M N+G G + Q + L K S G+ +KDEIK+E+DQ TLK
Sbjct: 1 MASSSNVGSGNLVDELEEAFQSCIHALTKEESATGI---------DKDEIKVEVDQTTLK 51
Query: 86 FLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIA 145
F+DLARQMEAFFLQKRFLLSALKP+L++KE N DL+ ++ RK+ELI++HY+KI
Sbjct: 52 FIDLARQMEAFFLQKRFLLSALKPDLLLKEENF------DLKQEIGRKDELIRKHYEKIE 105
Query: 146 VWQNLLSDLQS 156
W+ LLSD Q+
Sbjct: 106 SWKQLLSDQQN 116
>gi|125778136|ref|XP_001359845.1| GA18674 [Drosophila pseudoobscura pseudoobscura]
gi|195157506|ref|XP_002019637.1| GL12107 [Drosophila persimilis]
gi|121989487|sp|Q294G7.1|MED28_DROPS RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Mediator complex subunit 28
gi|54639595|gb|EAL28997.1| GA18674 [Drosophila pseudoobscura pseudoobscura]
gi|194116228|gb|EDW38271.1| GL12107 [Drosophila persimilis]
Length = 190
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 12/153 (7%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLSLTKQEPNSGT-NKEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKS----PAHQGSTSSASGTT 269
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q + P + G SG
Sbjct: 78 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQQGVHNRPTPPINPGMLQGPSGMQ 137
Query: 270 PPNSTPTQSGPGISAMGGPLPGM-MGGMAPIVP 301
P G G+ G +PGM GGM+P+ P
Sbjct: 138 QP------MGGGVPPRPGLMPGMPPGGMSPVGP 164
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 63/84 (75%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKEALLQKHYNRLEEWKACLSDIQ 114
>gi|195038053|ref|XP_001990475.1| GH19375 [Drosophila grimshawi]
gi|193894671|gb|EDV93537.1| GH19375 [Drosophila grimshawi]
Length = 183
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
Q+CL LTK++ S T K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 21 FQACLLSLTKQEPNSGT-NKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPHML 79
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL-QGWAKSPAH 258
+K++ DL ++ARKE L+++HY+++ W+ LSD+ QG P H
Sbjct: 80 IKDENQDLSIEIARKETLLQKHYNRLEEWKACLSDIQQGVHNRPTH 125
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 63/84 (75%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++A
Sbjct: 39 KEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPHMLIKDENQ------DLSIEIA 92
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 93 RKETLLQKHYNRLEEWKACLSDIQ 116
>gi|260805604|ref|XP_002597676.1| hypothetical protein BRAFLDRAFT_217297 [Branchiostoma floridae]
gi|229282943|gb|EEN53688.1| hypothetical protein BRAFLDRAFT_217297 [Branchiostoma floridae]
Length = 127
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 78/113 (69%), Gaps = 5/113 (4%)
Query: 149 NLLSDLQSCLQVL----TKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
NL+ DL+S L +D V+ +E+DEIK ++Q KFLD A+Q+E FFLQ+R L
Sbjct: 13 NLVDDLESSFHTLFSSLVNQDHVNI-VEQDEIKTSVEQNVQKFLDTAKQIECFFLQRRLL 71
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
LS+ +PE I+KEDI +LR +L RKE LI++H KIA WQ +L+D++G + P+
Sbjct: 72 LSSQRPEQILKEDIQELRTELQRKEALIQKHQQKIAQWQTVLADIRGLGRRPS 124
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 66/96 (68%), Gaps = 6/96 (6%)
Query: 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMV 119
L + ++ +E+DEIK ++Q KFLD A+Q+E FFLQ+R LLS+ +PE I+KE
Sbjct: 28 SLVNQDHVNIVEQDEIKTSVEQNVQKFLDTAKQIECFFLQRRLLLSSQRPEQILKE---- 83
Query: 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155
DI +LR +L RKE LI++H KIA WQ +L+D++
Sbjct: 84 --DIQELRTELQRKEALIQKHQQKIAQWQTVLADIR 117
>gi|195445444|ref|XP_002070327.1| GK11095 [Drosophila willistoni]
gi|194166412|gb|EDW81313.1| GK11095 [Drosophila willistoni]
Length = 178
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
Q CL LTK++ S T K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQLCLLSLTKQEPNSGT-NKEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPHML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL H++ RK+ L+++HY+++ W+ LSD+Q
Sbjct: 78 IKDENQDLHHEIQRKDALLQKHYNRLEEWKACLSDIQ 114
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 64/84 (76%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL H++
Sbjct: 37 KEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPHMLIKDENQ------DLHHEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RK+ L+++HY+++ W+ LSD+Q
Sbjct: 91 RKDALLQKHYNRLEEWKACLSDIQ 114
>gi|357631489|gb|EHJ78961.1| putative mediator complex [Danaus plexippus]
Length = 521
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 5/96 (5%)
Query: 156 SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVK 215
+CL VLTK++ +++ +F+DLAR MEAFFLQKRFLLSA+KPEL+VK
Sbjct: 399 ACLNVLTKQETSPCVEKEEVR-----VEVERFIDLARLMEAFFLQKRFLLSAMKPELLVK 453
Query: 216 EDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251
ED +L+ +L RKEEL++RH DKI+ WQNLL+DLQG
Sbjct: 454 EDNNELKCELQRKEELLRRHSDKISQWQNLLADLQG 489
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 6/70 (8%)
Query: 86 FLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIA 145
F+DLAR MEAFFLQKRFLLSA+KPEL+VKE N +L+ +L RKEEL++RH DKI+
Sbjct: 425 FIDLARLMEAFFLQKRFLLSAMKPELLVKEDNN------ELKCELQRKEELLRRHSDKIS 478
Query: 146 VWQNLLSDLQ 155
WQNLL+DLQ
Sbjct: 479 QWQNLLADLQ 488
>gi|195573897|ref|XP_002104928.1| GD21218 [Drosophila simulans]
gi|194200855|gb|EDX14431.1| GD21218 [Drosophila simulans]
Length = 190
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLTLTKQEPNSGT-NKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 78 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKEALLQKHYNRLEEWKACLSDIQ 114
>gi|195349447|ref|XP_002041256.1| GM10244 [Drosophila sechellia]
gi|194122951|gb|EDW44994.1| GM10244 [Drosophila sechellia]
Length = 190
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLTLTKQEPNSGT-NKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 78 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKEALLQKHYNRLEEWKACLSDIQ 114
>gi|24650074|ref|NP_651397.1| mediator complex subunit 28 [Drosophila melanogaster]
gi|60392753|sp|Q9VBQ9.1|MED28_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Mediator complex subunit 28; AltName:
Full=dMED23
gi|7301342|gb|AAF56470.1| mediator complex subunit 28 [Drosophila melanogaster]
gi|21430116|gb|AAM50736.1| GM31575p [Drosophila melanogaster]
gi|220950074|gb|ACL87580.1| MED28-PA [synthetic construct]
gi|220959136|gb|ACL92111.1| MED28-PA [synthetic construct]
Length = 189
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLTLTKQEPNSGT-NKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 78 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKEALLQKHYNRLEEWKACLSDIQ 114
>gi|195504331|ref|XP_002099033.1| GE23602 [Drosophila yakuba]
gi|194185134|gb|EDW98745.1| GE23602 [Drosophila yakuba]
Length = 190
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLSLTKQEPNSGT-NKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 78 IKDENQDLSIEIQRKETLLQKHYNRLEEWKACLSDIQ 114
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKETLLQKHYNRLEEWKACLSDIQ 114
>gi|194908552|ref|XP_001981792.1| GG11406 [Drosophila erecta]
gi|190656430|gb|EDV53662.1| GG11406 [Drosophila erecta]
Length = 190
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLSLTKQEPNSGT-NKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 78 IKDENQDLSIEIQRKETLLQKHYNRLEEWKACLSDIQ 114
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKETLLQKHYNRLEEWKACLSDIQ 114
>gi|195111564|ref|XP_002000348.1| GI22577 [Drosophila mojavensis]
gi|193916942|gb|EDW15809.1| GI22577 [Drosophila mojavensis]
Length = 181
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 21 FQSCLLSLTKQEPNSGT-NKEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 79
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 80 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 116
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 63/84 (75%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 39 KEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 92
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 93 RKEALLQKHYNRLEEWKACLSDIQ 116
>gi|195395384|ref|XP_002056316.1| GJ10299 [Drosophila virilis]
gi|194143025|gb|EDW59428.1| GJ10299 [Drosophila virilis]
Length = 187
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
Q+CL LTK++ S T K+EI+L++ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 21 FQACLLSLTKQEPNSGT-NKEEIELDVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 79
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 80 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 116
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 63/84 (75%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI+L++ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 39 KEEIELDVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 92
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 93 RKEALLQKHYNRLEEWKACLSDIQ 116
>gi|410957882|ref|XP_003985553.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Felis catus]
Length = 175
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 45 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 103
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 104 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINAQHKKPAEIPQGSLAYLEQ 163
Query: 265 ASGTTP 270
AS P
Sbjct: 164 ASANIP 169
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 7 GGPRGGGNAGPPPFPSAGPGGMGGPGNL-----GPGGMGPGGLLQGPLAYLEKTTSNIGL 61
P GG +G PP PG G +L GP L+ + E +++
Sbjct: 2 AAPLGGMFSGQPP---GHPGDSRGQASLLQAAPGPPRTSNSTLVDELESSFEACFASLVS 58
Query: 62 PDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTK 121
D ++ +++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE
Sbjct: 59 QD--YVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------ 110
Query: 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156
D+ +LR++L RK+ L+++H K+ WQ +L D+ +
Sbjct: 111 DVSELRNELQRKDALVQKHLTKLRHWQQVLEDINA 145
>gi|395841436|ref|XP_003793543.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Otolemur garnettii]
Length = 178
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 6/133 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDISVQHKKPADIPQGSLAYLE 165
Query: 264 SASGTTPPNSTPT 276
AS T P PT
Sbjct: 166 QASATIPAPLKPT 178
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|194743130|ref|XP_001954053.1| GF16936 [Drosophila ananassae]
gi|190627090|gb|EDV42614.1| GF16936 [Drosophila ananassae]
Length = 190
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI+L++ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLSLTKQEPNSGT-NKEEIELDVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 78 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 63/84 (75%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI+L++ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIELDVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKEALLQKHYNRLEEWKACLSDIQ 114
>gi|432847379|ref|XP_004065995.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Oryzias latipes]
Length = 180
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE +VKED+ +LR++L RKE+L+++H K+ WQ +L D+ G + P
Sbjct: 107 PEQVVKEDVSELRNELQRKEQLVQKHLAKLHHWQQVLEDVSGQHRKPT 154
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE +VKE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVVKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE+L+++H K+ WQ +L D+
Sbjct: 123 QRKEQLVQKHLAKLHHWQQVLEDV 146
>gi|296196827|ref|XP_002746002.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Callithrix jacchus]
Length = 178
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D VS T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVSGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADIPQGSLAYLE 165
Query: 264 SASGTTPPNSTPT 276
AS P PT
Sbjct: 166 QASANIPAPLKPT 178
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|355702042|gb|AES01799.1| mediator complex subunit 28 [Mustela putorius furo]
Length = 174
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 44 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 102
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 103 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPAEIPQGSLAYLEQ 162
Query: 265 ASGTTP 270
AS P
Sbjct: 163 ASANIP 168
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 16/153 (10%)
Query: 7 GGPRGGGNAGPPPFPSAGPGGMGGPGNL-----GPGGMGPGGLLQGPLAYLEKTTSNIGL 61
P GG +G PP PG G +L GP L+ + E +++
Sbjct: 1 AAPMGGMFSGQPP---GHPGDSRGQASLLQAAPGPPRTSNSTLVDELESSFEACFASLVS 57
Query: 62 PDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTK 121
D ++ +++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE
Sbjct: 58 QD--YVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------ 109
Query: 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
D+ +LR++L RK+ L+++H K+ WQ +L D+
Sbjct: 110 DVSELRNELQRKDALVQKHLTKLRHWQQVLEDI 142
>gi|301761774|ref|XP_002916302.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Ailuropoda melanoleuca]
gi|281352300|gb|EFB27884.1| hypothetical protein PANDA_004369 [Ailuropoda melanoleuca]
Length = 175
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 44 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 102
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 103 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPAEIPQGSLAYLE 162
Query: 264 SASGTTP 270
AS P
Sbjct: 163 QASANIP 169
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 16/153 (10%)
Query: 7 GGPRGGGNAGPPPFPSAGPGGMGGPGNL-----GPGGMGPGGLLQGPLAYLEKTTSNIGL 61
P GG +G PP PG G +L GP L+ + E +++
Sbjct: 2 AAPLGGMFSGQPP---GHPGDSRGQASLLQAAPGPPRTSNSTLVDELESSFEACFASLVS 58
Query: 62 PDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTK 121
D ++ +++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE
Sbjct: 59 QD--YVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------ 110
Query: 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
D+ +LR++L RK+ L+++H K+ WQ +L D+
Sbjct: 111 DVSELRNELQRKDALVQKHLTKLRHWQQVLEDI 143
>gi|73951404|ref|XP_850777.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
isoform 2 [Canis lupus familiaris]
Length = 175
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 45 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 103
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 104 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPAEIPQGSLAYLEQ 163
Query: 265 ASGTTP 270
AS P
Sbjct: 164 ASANIP 169
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 66 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 119
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 120 QRKDALVQKHLTKLRHWQQVLEDI 143
>gi|348558561|ref|XP_003465086.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Cavia porcellus]
Length = 178
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSLQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPAEMPQGSLAYLE 165
Query: 264 SASGTTP 270
AS P
Sbjct: 166 QASANIP 172
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 7 GGPRGGGNAGPPPFPSAGPGGMGGPGNL---GPGG--MGPGGLLQGPLAYLEKTTSNIGL 61
P GG + P PS P G+ +L PG L+ + E +++
Sbjct: 2 AAPLGGMFSAQLPGPSGAPPGLSSQPSLLQAAPGAPRSSNSTLVDELESSFEACFASLVS 61
Query: 62 PDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTK 121
D ++ +++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE
Sbjct: 62 QD--YVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSLQKPEQVIKE------ 113
Query: 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
D+ +LR++L RK+ L+++H K+ WQ +L D+
Sbjct: 114 DVSELRNELQRKDALVQKHLTKLRHWQQVLEDI 146
>gi|410038132|ref|XP_003950342.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
isoform 1 [Pan troglodytes]
gi|119613188|gb|EAW92782.1| mediator of RNA polymerase II transcription, subunit 28 homolog
(yeast), isoform CRA_b [Homo sapiens]
Length = 182
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADIPQGSLAYLE 165
Query: 264 SASGTTPPNSTPT 276
AS P PT
Sbjct: 166 QASANIPAPLKPT 178
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|348524448|ref|XP_003449735.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Oreochromis niloticus]
Length = 180
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE +VKED+ +LR++L RKE L+++H K+ WQ +L D+ G + P+
Sbjct: 107 PEQVVKEDVSELRNELQRKEMLVQKHLTKLHHWQQVLEDVSGQHRKPS 154
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Query: 32 GNLGPGGMGPGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLAR 91
+ P G L+ A E +++ D ++ +++EI+ +DQ KFLD+AR
Sbjct: 32 ASAAPRTQGSNTLVDELEASFEACFASLVSQD--YVNGTDQEEIRTGVDQCIQKFLDVAR 89
Query: 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLL 151
Q E FFLQKR LS KPE +VKE D+ +LR++L RKE L+++H K+ WQ +L
Sbjct: 90 QTECFFLQKRLQLSVQKPEQVVKE------DVSELRNELQRKEMLVQKHLTKLHHWQQVL 143
Query: 152 SDL 154
D+
Sbjct: 144 EDV 146
>gi|52851391|ref|NP_079481.2| mediator of RNA polymerase II transcription subunit 28 [Homo
sapiens]
gi|297673221|ref|XP_002814672.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Pongo abelii]
gi|332819123|ref|XP_517120.3| PREDICTED: mediator of RNA polymerase II transcription subunit 28
isoform 2 [Pan troglodytes]
gi|397513098|ref|XP_003826862.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Pan paniscus]
gi|426343926|ref|XP_004038531.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Gorilla gorilla gorilla]
gi|59799838|sp|Q9H204.1|MED28_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Endothelial-derived protein 1;
AltName: Full=Mediator complex subunit 28; AltName:
Full=Merlin and Grb2-interacting cytoskeletal protein;
Short=Magicin; AltName: Full=Tumor angiogenesis marker
EG-1
gi|16588816|gb|AAL26906.1|AF318059_1 FKSG20 [Homo sapiens]
gi|11596418|gb|AAG38612.1| unknown [Homo sapiens]
gi|13605460|gb|AAK32724.1| tumor angiogenesis marker [Homo sapiens]
gi|15080367|gb|AAH11936.1| Mediator complex subunit 28 [Homo sapiens]
gi|119613187|gb|EAW92781.1| mediator of RNA polymerase II transcription, subunit 28 homolog
(yeast), isoform CRA_a [Homo sapiens]
gi|123993431|gb|ABM84317.1| mediator of RNA polymerase II transcription, subunit 28 homolog (S.
cerevisiae) [synthetic construct]
gi|124000407|gb|ABM87712.1| mediator of RNA polymerase II transcription, subunit 28 homolog (S.
cerevisiae) [synthetic construct]
gi|410217840|gb|JAA06139.1| mediator complex subunit 28 [Pan troglodytes]
gi|410259764|gb|JAA17848.1| mediator complex subunit 28 [Pan troglodytes]
gi|410335155|gb|JAA36524.1| mediator complex subunit 28 [Pan troglodytes]
Length = 178
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADIPQGSLAYLE 165
Query: 264 SASGTTPPNSTPT 276
AS P PT
Sbjct: 166 QASANIPAPLKPT 178
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|363733796|ref|XP_003641296.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Gallus gallus]
Length = 178
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RKE LI++H K+ WQ +L D+ K PA
Sbjct: 107 PEQVIKEDVSELRNELQRKEALIQKHLSKLRHWQQVLEDISVQHKKPA 154
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE LI++H K+ WQ +L D+
Sbjct: 123 QRKEALIQKHLSKLRHWQQVLEDI 146
>gi|449501002|ref|XP_002192020.2| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Taeniopygia guttata]
Length = 167
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
+L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 36 DLEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQ 94
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
KPE ++KED+ +LR++L RKE LI++H K+ WQ +L D+ K PA
Sbjct: 95 KPEQVIKEDVSELRNELQRKEALIQKHLSKLRHWQQVLEDISVQHKKPA 143
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 58 DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 111
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE LI++H K+ WQ +L D+
Sbjct: 112 QRKEALIQKHLSKLRHWQQVLEDI 135
>gi|417396565|gb|JAA45316.1| Putative mediator of rna polymerase ii transcription subunit 28
[Desmodus rotundus]
Length = 178
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 149 NLLSDLQ----SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
L DL +C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR
Sbjct: 43 TLFCDLXXXXXACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQ 101
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGST 262
LS KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ G K PA QGS
Sbjct: 102 LSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINGQHKKPADIPQGSL 161
Query: 263 S---SASGTTP 270
+ AS P
Sbjct: 162 AYLEQASANIP 172
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|410917994|ref|XP_003972471.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Takifugu rubripes]
Length = 180
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ+E FFLQKRF LS
Sbjct: 47 ELEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQIECFFLQKRFQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
KPE +VKED+ +LR++L RKE L+++H K+ WQ +L ++ + P+
Sbjct: 106 KPEQVVKEDVSELRYELQRKEMLVQKHLSKLHHWQQVLEEVSLQHRKPS 154
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 59/84 (70%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ+E FFLQKRF LS KPE +VKE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDVARQIECFFLQKRFQLSVQKPEQVVKE------DVSELRYEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE L+++H K+ WQ +L ++
Sbjct: 123 QRKEMLVQKHLSKLHHWQQVLEEV 146
>gi|432112335|gb|ELK35132.1| Mediator of RNA polymerase II transcription subunit 28 [Myotis
davidii]
Length = 174
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S Q C L +D V+ ++++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFQVCFASLVSQDYVNG-MDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ LR +L RK+ L+++H K+ WQ +L D+ G K PA QGS +
Sbjct: 106 KPEQVIKEDVSALRKELQRKDALVQKHLTKLWHWQQVLEDINGQHKKPADIPQGSLAYLE 165
Query: 264 SASGTTP 270
AS P
Sbjct: 166 QASANIP 172
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 6/85 (7%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
++++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ LR +
Sbjct: 68 MDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSALRKE 121
Query: 130 LARKEELIKRHYDKIAVWQNLLSDL 154
L RK+ L+++H K+ WQ +L D+
Sbjct: 122 LQRKDALVQKHLTKLWHWQQVLEDI 146
>gi|344279282|ref|XP_003411418.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Loxodonta africana]
Length = 174
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 144 IAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF 203
I + L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR
Sbjct: 42 ITLVDELESSFETCFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRL 100
Query: 204 LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGS 261
LS KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS
Sbjct: 101 QLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLDDINVQHKKPADLPQGS 160
Query: 262 TS---SASGTTP 270
+ AS P
Sbjct: 161 LAYLEQASANIP 172
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLDDI 146
>gi|47211302|emb|CAF92151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 166
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ+E FFLQKRF LS
Sbjct: 47 ELEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQIECFFLQKRFQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
KPE +VKEDI +LR++L RKE L+++H K+ WQ +L ++ + P+
Sbjct: 106 KPEQVVKEDISELRNELQRKEMLVQKHLSKLHHWQQVLEEVSLQHRKPS 154
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ+E FFLQKRF LS KPE +VKE DI +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDVARQIECFFLQKRFQLSVQKPEQVVKE------DISELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE L+++H K+ WQ +L ++
Sbjct: 123 QRKEMLVQKHLSKLHHWQQVLEEV 146
>gi|13021850|gb|AAK11563.1| tumor-related protein [Homo sapiens]
Length = 193
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 106 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPA 154
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|149702868|ref|XP_001500349.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Equus caballus]
Length = 178
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PEQVIKEDVSELRNELQRKDTLVQKHLTKLRHWQQVLEDINVQHKKPADIPQGSLAYLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDTLVQKHLTKLRHWQQVLEDI 146
>gi|296486688|tpg|DAA28801.1| TPA: mediator of RNA polymerase II transcription subunit 28 [Bos
taurus]
gi|440913286|gb|ELR62754.1| Mediator of RNA polymerase II transcription subunit 28 [Bos
grunniens mutus]
Length = 178
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINMQHKKPADIPQGSLAYLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|343780968|ref|NP_001230498.1| mediator complex subunit 28 [Sus scrofa]
Length = 178
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADLPQGSLAYLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|355749186|gb|EHH53585.1| Mediator complex subunit 28 [Macaca fascicularis]
Length = 178
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L ++ K PA QGS +
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEEINVQHKKPADIPQGSLAYLEQ 166
Query: 265 ASGTTPPNSTPT 276
AS P PT
Sbjct: 167 ASANIPAPLKPT 178
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L ++
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEEI 146
>gi|403277973|ref|XP_003930614.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Saimiri boliviensis boliviensis]
Length = 178
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 148 QNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSA 207
+ L S ++C L +D VS T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 46 EELESSFEACFASLVSQDYVSGT-DQEEIRTGVDQCIQKFLDIARQKECFFLQKRLQLSI 104
Query: 208 LKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 105 QKPEQVIKEDVSELRNELQRKDVLVQKHLTKLRHWQQVLEDINVQHKKPA 154
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQKECFFLQKRLQLSIQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDVLVQKHLTKLRHWQQVLEDI 146
>gi|402869023|ref|XP_003898574.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Papio anubis]
Length = 178
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L ++ K PA QGS +
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEEINVHHKKPADIPQGSLAYLEQ 166
Query: 265 ASGTTPPNSTPT 276
AS P PT
Sbjct: 167 ASANIPAPLKPT 178
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L ++
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEEI 146
>gi|355687188|gb|EHH25772.1| Mediator complex subunit 28 [Macaca mulatta]
Length = 178
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L ++ K PA QGS +
Sbjct: 106 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEEINVQHKKPADIPQGSLAYLE 165
Query: 264 SASGTTPPNSTPT 276
AS P PT
Sbjct: 166 QASANIPAPLKPT 178
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L ++
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEEI 146
>gi|84370101|ref|NP_001033627.1| mediator of RNA polymerase II transcription subunit 28 [Bos taurus]
gi|110810431|sp|Q2TBN4.1|MED28_BOVIN RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Mediator complex subunit 28
gi|83638750|gb|AAI09887.1| Mediator complex subunit 28 [Bos taurus]
Length = 178
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIKKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINMQHKKPADIPQGSLAYLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIKKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|354487729|ref|XP_003506024.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Cricetulus griseus]
gi|344235593|gb|EGV91696.1| Mediator of RNA polymerase II transcription subunit 28 [Cricetulus
griseus]
Length = 178
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KP+ ++KED+ +LR +L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPDQVIKEDVSELRSELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPAEIPQGSLAYLE 165
Query: 264 SASGTTPPNSTPT 276
AS P PT
Sbjct: 166 QASANIPAPLKPT 178
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR +L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRSEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|431897201|gb|ELK06463.1| Cytosol aminopeptidase [Pteropus alecto]
Length = 592
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Query: 156 SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVK 215
+C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++K
Sbjct: 468 ACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIK 526
Query: 216 EDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGS 261
ED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS
Sbjct: 527 EDVSELRNELQRKDALVQKHLTKLRHWQQVLEDVSAQHKKPADIPQGS 574
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 483 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 536
Query: 131 ARKEELIKRHYDKIAVWQNLLSDLQS 156
RK+ L+++H K+ WQ +L D+ +
Sbjct: 537 QRKDALVQKHLTKLRHWQQVLEDVSA 562
>gi|449273510|gb|EMC83004.1| Mediator of RNA polymerase II transcription subunit 28, partial
[Columba livia]
Length = 126
Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 6/121 (4%)
Query: 155 QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIV 214
Q+C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++
Sbjct: 1 QACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVI 59
Query: 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGS---TSSASGTT 269
KED+ +LR++L RKE LI++H K+ WQ +L D+ K PA QG AS T
Sbjct: 60 KEDVSELRNELQRKEALIQKHLAKLRHWQQVLEDISVQHKKPAEMPQGPLVYLEQASATI 119
Query: 270 P 270
P
Sbjct: 120 P 120
Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 17 DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 70
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE LI++H K+ WQ +L D+
Sbjct: 71 QRKEALIQKHLAKLRHWQQVLEDI 94
>gi|351696103|gb|EHA99021.1| Mediator of RNA polymerase II transcription subunit 28
[Heterocephalus glaber]
Length = 178
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K P QGS +
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPTEIPQGSLAYLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|291385577|ref|XP_002709413.1| PREDICTED: mediator complex subunit 28 [Oryctolagus cuniculus]
Length = 178
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
P+ ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PDQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPAEIPQGSLAYLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|156717872|ref|NP_001096476.1| mediator of RNA polymerase II transcription subunit 28 [Xenopus
(Silurana) tropicalis]
gi|158705956|sp|A4IIZ9.1|MED28_XENTR RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Mediator complex subunit 28
gi|134024314|gb|AAI36219.1| LOC100125095 protein [Xenopus (Silurana) tropicalis]
gi|160773108|gb|AAI55039.1| med28 protein [Xenopus (Silurana) tropicalis]
Length = 169
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
+L S ++C L +D V+ T +++EI+ ++Q KFLD+ARQ E FFLQKR LS
Sbjct: 38 DLESSFEACFASLVSQDYVNGT-DQEEIRTGVEQCIQKFLDVARQTECFFLQKRLQLSVQ 96
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
KPE ++KED+ +LR++L RKE LI++H K+ WQ +L ++ G K +
Sbjct: 97 KPEQVIKEDVSELRNELQRKEALIQKHLTKLRSWQQVLEEINGQHKKTSE 146
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 36 PGGMGPGGLLQGPL-AYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQME 94
PG P L L + E +++ D ++ +++EI+ ++Q KFLD+ARQ E
Sbjct: 26 PGAKNPSSTLVDDLESSFEACFASLVSQDY--VNGTDQEEIRTGVEQCIQKFLDVARQTE 83
Query: 95 AFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
FFLQKR LS KPE ++KE D+ +LR++L RKE LI++H K+ WQ +L ++
Sbjct: 84 CFFLQKRLQLSVQKPEQVIKE------DVSELRNELQRKEALIQKHLTKLRSWQQVLEEI 137
>gi|391333297|ref|XP_003741055.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Metaseiulus occidentalis]
Length = 175
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 71/111 (63%)
Query: 148 QNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSA 207
+ L + SC+ T + + DEIK+ ++Q KFLD ARQME FFLQKR L+S
Sbjct: 7 EELETAFHSCIAATTNNEYFAPRDNGDEIKVTVEQTVRKFLDTARQMECFFLQKRLLVSP 66
Query: 208 LKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
KPE IV ED ++L+++L RKE+L+++++ K+ WQ L+SD + +P H
Sbjct: 67 QKPEQIVMEDNMELKNELMRKEQLLEKYHAKLIDWQRLVSDTSIGSGAPPH 117
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%), Gaps = 6/81 (7%)
Query: 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132
DEIK+ ++Q KFLD ARQME FFLQKR L+S KPE IV E NM +L+++L R
Sbjct: 33 DEIKVTVEQTVRKFLDTARQMECFFLQKRLLVSPQKPEQIVMEDNM------ELKNELMR 86
Query: 133 KEELIKRHYDKIAVWQNLLSD 153
KE+L+++++ K+ WQ L+SD
Sbjct: 87 KEQLLEKYHAKLIDWQRLVSD 107
>gi|380800723|gb|AFE72237.1| mediator of RNA polymerase II transcription subunit 28, partial
[Macaca mulatta]
Length = 167
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 37 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 95
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L ++ K PA QGS +
Sbjct: 96 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEEINVQHKKPADIPQGSLAYLEQ 155
Query: 265 ASGTTPPNSTPT 276
AS P PT
Sbjct: 156 ASANIPAPLKPT 167
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 58 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 111
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L ++
Sbjct: 112 QRKDALVQKHLTKLRHWQQVLEEI 135
>gi|426231483|ref|XP_004009768.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Ovis aries]
Length = 178
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
P+ ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PDQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINMQHKKPADIPQGSLAYLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|444705570|gb|ELW46983.1| Mediator of RNA polymerase II transcription subunit 28 [Tupaia
chinensis]
Length = 178
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++ K+ WQ +L DL + PA QGS +
Sbjct: 106 KPEQVIKEDVSELRNELQRKDTLVQKQLAKLRHWQQVLEDLSAQHRQPAEGPQGSLAYLE 165
Query: 264 SASGTTP 270
AS P
Sbjct: 166 QASANIP 172
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++ K+ WQ +L DL
Sbjct: 123 QRKDTLVQKQLAKLRHWQQVLEDL 146
>gi|395542987|ref|XP_003773404.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Sarcophilus harrisii]
Length = 183
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 53 LEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 111
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RKE L+++H K+ WQ +L ++ K PA
Sbjct: 112 PEQVIKEDVSELRNELQRKEALVQKHLAKLRHWQQVLEEINMQHKKPA 159
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 74 DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 127
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE L+++H K+ WQ +L ++
Sbjct: 128 QRKEALVQKHLAKLRHWQQVLEEI 151
>gi|157821997|ref|NP_001100687.1| mediator of RNA polymerase II transcription subunit 28 [Rattus
norvegicus]
gi|60392647|sp|P68943.1|MED28_RAT RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Mediator complex subunit 28
gi|149047257|gb|EDL99926.1| mediator of RNA polymerase II transcription, subunit 28 homolog
(yeast) (predicted) [Rattus norvegicus]
Length = 178
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KP+ ++KED+ +LR +L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPDQVIKEDVSELRSELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADMPQGSLAYLE 165
Query: 264 SASGTTP 270
AS P
Sbjct: 166 QASANIP 172
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR +L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRSEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|387016900|gb|AFJ50568.1| Mediator of RNA polymerase II transcription subunit 28-like
[Crotalus adamanteus]
Length = 182
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
+L + ++C L +D V+ T +++EI+ +DQ KFL++ARQ E FFLQKR LS
Sbjct: 51 DLEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLEVARQTECFFLQKRLQLSVQ 109
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
KP+ ++KED+ +LR++L RKE LI++H K+ WQ +L D+ K P
Sbjct: 110 KPDQVIKEDVSELRNELQRKETLIQKHLGKLRHWQQVLDDINIQQKKPTE 159
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFL++ARQ E FFLQKR LS KP+ ++KE D+ +LR++L
Sbjct: 73 DQEEIRTGVDQCIQKFLEVARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRNEL 126
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE LI++H K+ WQ +L D+
Sbjct: 127 QRKETLIQKHLGKLRHWQQVLDDI 150
>gi|13385388|ref|NP_080171.1| mediator of RNA polymerase II transcription subunit 28 [Mus
musculus]
gi|60392752|sp|Q920D3.2|MED28_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Mediator complex subunit 28
gi|12834775|dbj|BAB23039.1| unnamed protein product [Mus musculus]
gi|12838383|dbj|BAB24184.1| unnamed protein product [Mus musculus]
gi|12841676|dbj|BAB25307.1| unnamed protein product [Mus musculus]
gi|19354307|gb|AAH24941.1| Med28 protein [Mus musculus]
gi|74178401|dbj|BAE32464.1| unnamed protein product [Mus musculus]
gi|148705675|gb|EDL37622.1| mediator of RNA polymerase II transcription, subunit 28 homolog
(yeast) [Mus musculus]
Length = 178
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
P+ ++KED+ +LR +L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PDQVIKEDVSELRSELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADMPQGSLAFLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR +L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRSEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|442750695|gb|JAA67507.1| Putative mediator of rna polymerase ii transcription subunit
[Ixodes ricinus]
Length = 190
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 152 SDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPE 211
+ Q+CL +T D + +E+K ++Q +FLD+A+QME FFLQKR +LSA KPE
Sbjct: 13 NSFQACLAAVTNPDYFYVR-DSEEVKTGVEQTIQRFLDVAKQMECFFLQKRLVLSAQKPE 71
Query: 212 LIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248
IV ED +L+++LARKE+L++++++KI WQ+LL+D
Sbjct: 72 QIVMEDNTELKNELARKEQLLQKYHEKIHFWQSLLND 108
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 62/83 (74%), Gaps = 6/83 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+ +E+K ++Q +FLD+A+QME FFLQKR +LSA KPE IV E D +L+++L
Sbjct: 32 DSEEVKTGVEQTIQRFLDVAKQMECFFLQKRLVLSAQKPEQIVME------DNTELKNEL 85
Query: 131 ARKEELIKRHYDKIAVWQNLLSD 153
ARKE+L++++++KI WQ+LL+D
Sbjct: 86 ARKEQLLQKYHEKIHFWQSLLND 108
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 38 GMGPGGLLQG---PLAYLEKTTSNIGLPDGR 65
GM G +QG PLAYLE+TTS+IG+PD R
Sbjct: 159 GMPMNGTVQGLPGPLAYLERTTSSIGMPDSR 189
>gi|126331864|ref|XP_001363063.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Monodelphis domestica]
Length = 183
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 53 LEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 111
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSP 256
PE ++KED+ +LR++L RKE L+++H K+ WQ +L ++ K P
Sbjct: 112 PEQVIKEDVSELRNELQRKEALVQKHLAKLRHWQQVLEEINIQHKKP 158
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 14/130 (10%)
Query: 25 PGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATL 84
P GGP N L+ A E +++ D ++ +++EI+ +DQ
Sbjct: 36 PTAAGGPRN------SNNTLVDELEASFEACFASLVSQD--YVNGTDQEEIRTGVDQCIQ 87
Query: 85 KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144
KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L RKE L+++H K+
Sbjct: 88 KFLDVARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNELQRKEALVQKHLAKL 141
Query: 145 AVWQNLLSDL 154
WQ +L ++
Sbjct: 142 RHWQQVLEEI 151
>gi|241154569|ref|XP_002407335.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
gi|215494096|gb|EEC03737.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
Length = 190
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 152 SDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPE 211
+ Q+CL +T D + +E+K ++Q +FLD+A+QME FFLQKR +LSA KPE
Sbjct: 13 NSFQACLAAVTNPDYFYVR-DSEEVKTGVEQTIQRFLDVAKQMECFFLQKRLVLSAQKPE 71
Query: 212 LIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248
IV ED +L+++LARKE+L++++++KI WQ+LL+D
Sbjct: 72 QIVMEDNTELKNELARKEQLLQKYHEKIHFWQSLLND 108
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 62/83 (74%), Gaps = 6/83 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+ +E+K ++Q +FLD+A+QME FFLQKR +LSA KPE IV E D +L+++L
Sbjct: 32 DSEEVKTGVEQTIQRFLDVAKQMECFFLQKRLVLSAQKPEQIVME------DNTELKNEL 85
Query: 131 ARKEELIKRHYDKIAVWQNLLSD 153
ARKE+L++++++KI WQ+LL+D
Sbjct: 86 ARKEQLLQKYHEKIHFWQSLLND 108
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 38 GMGPGGLLQG---PLAYLEKTTSNIGLPDGR 65
GM G +QG PLAYLE+TTSNIG+PD R
Sbjct: 159 GMPMNGTVQGLPGPLAYLERTTSNIGMPDSR 189
>gi|16588819|gb|AAL26907.1|AF318060_1 FKSG20 [Mus musculus]
Length = 178
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
P ++KED+ +LR +L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PHQVIKEDVSELRSELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADMPQGSLAFLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP ++KE D+ +LR +L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPHQVIKE------DVSELRSEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|443698083|gb|ELT98251.1| hypothetical protein CAPTEDRAFT_28737, partial [Capitella teleta]
Length = 110
Score = 98.2 bits (243), Expect = 6e-18, Method: Composition-based stats.
Identities = 43/99 (43%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
+L CL +T ++ + + + DE+K +DQ+ KFLD+A+QME +FLQ+R LLS
Sbjct: 11 DLEGAFHGCLACMTSQEHFNIS-DSDEVKTSVDQSIQKFLDVAKQMECYFLQQRTLLSIY 69
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247
KPE I+KEDI +LR ++A K+ LI+RH++K+ WQ++++
Sbjct: 70 KPEQIIKEDIQELRQEIAVKDALIERHHEKLTQWQSIIT 108
Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 60/82 (73%), Gaps = 6/82 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+ DE+K +DQ+ KFLD+A+QME +FLQ+R LLS KPE I+KE DI +LR ++
Sbjct: 33 DSDEVKTSVDQSIQKFLDVAKQMECYFLQQRTLLSIYKPEQIIKE------DIQELRQEI 86
Query: 131 ARKEELIKRHYDKIAVWQNLLS 152
A K+ LI+RH++K+ WQ++++
Sbjct: 87 AVKDALIERHHEKLTQWQSIIT 108
>gi|440899197|gb|ELR50537.1| hypothetical protein M91_15548 [Bos grunniens mutus]
Length = 171
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L ++ V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 41 LESYFKACFASLVSQNYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 99
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L R++ L+++H K+ WQ +L D+ K PA
Sbjct: 100 PEQVIKEDVSELRNELQREDALVQKHLTKLRHWQQVLEDINMQHKKPA 147
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 62 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 115
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
R++ L+++H K+ WQ +L D+
Sbjct: 116 QREDALVQKHLTKLRHWQQVLEDI 139
>gi|346469869|gb|AEO34779.1| hypothetical protein [Amblyomma maculatum]
Length = 170
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 152 SDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPE 211
S Q+CL +T D + +E+K ++Q +FLDLA+QME+FFLQKR +LSA K E
Sbjct: 13 SSFQACLAAVTNPDYFYVR-DSEEVKTGVEQTIQRFLDLAKQMESFFLQKRLVLSAQKSE 71
Query: 212 LIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248
I+ ED +L+++LARKE+L++++ +KI WQ+LL+D
Sbjct: 72 QIIMEDNTELKNELARKEQLLQKYNEKILYWQSLLND 108
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 62/86 (72%), Gaps = 6/86 (6%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+ +E+K ++Q +FLDLA+QME+FFLQKR +LSA K E I+ E D +L+++L
Sbjct: 32 DSEEVKTGVEQTIQRFLDLAKQMESFFLQKRLVLSAQKSEQIIME------DNTELKNEL 85
Query: 131 ARKEELIKRHYDKIAVWQNLLSDLQS 156
ARKE+L++++ +KI WQ+LL+D S
Sbjct: 86 ARKEQLLQKYNEKILYWQSLLNDTSS 111
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 374 PGGMGGPGNLG-PGGMGPGGLLQGPLAYLEKTTSNIGLPDGRR 415
P GM G P G GL GPLAYLE+TTSNIG+PD RR
Sbjct: 129 PQGMPTQGQQSMPMGSSAQGL-PGPLAYLERTTSNIGMPDPRR 170
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 25 PGGMGGPGNLG-PGGMGPGGLLQGPLAYLEKTTSNIGLPDGR 65
P GM G P G GL GPLAYLE+TTSNIG+PD R
Sbjct: 129 PQGMPTQGQQSMPMGSSAQGL-PGPLAYLERTTSNIGMPDPR 169
>gi|296474957|tpg|DAA17072.1| TPA: endothelial-derived gene 1-like [Bos taurus]
Length = 177
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L ++ V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 47 LESYFKACFASLVSQNYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 105
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L R++ L+ +H K+ WQ +L D+ K PA
Sbjct: 106 PEQVIKEDVSELRNELQREDALVPKHLTKLRHWQQVLEDINMQHKKPA 153
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 7 GGPRGGGNAGPPPFPSAGPGGMGGPGNL-----GPGGMGPGGLLQGPLAYLEKTTSNIGL 61
P GG +G P P P G+ G +L G L+ +Y + ++ L
Sbjct: 1 SAPLGGMFSGQPLRPPQPPSGLLGQASLLQATPGVPRTSNSILVDKLESYFKACFAS--L 58
Query: 62 PDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTK 121
++ +++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE
Sbjct: 59 VSQNYVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------ 112
Query: 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
D+ +LR++L R++ L+ +H K+ WQ +L D+
Sbjct: 113 DVSELRNELQREDALVPKHLTKLRHWQQVLEDI 145
>gi|291395047|ref|XP_002713986.1| PREDICTED: endothelial-derived gene 1-like [Oryctolagus cuniculus]
Length = 178
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ K LD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFTSLVSQDYVNGT-DQEEIRTGVDQCIQKLLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 107 PEPVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINLQHKKPAE 155
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ K LD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKLLDIARQTECFFLQKRLQLSVQKPEPVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>gi|56090172|ref|NP_001007771.1| mediator of RNA polymerase II transcription subunit 28 [Danio
rerio]
gi|82179813|sp|Q5RKN3.1|MED28_DANRE RecName: Full=Mediator of RNA polymerase II transcription subunit
28; AltName: Full=Mediator complex subunit 28
gi|55716119|gb|AAH85569.1| Zgc:103633 [Danio rerio]
gi|182891660|gb|AAI64956.1| Zgc:103633 [Danio rerio]
Length = 179
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 49 LEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 107
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE + KED +L+++L RKE LI++H KI WQ +L D+ K P
Sbjct: 108 PEQVEKEDASELKNELQRKEMLIQKHLAKIHHWQQVLEDINVQHKKPT 155
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 9/120 (7%)
Query: 36 PGGMGPGGLLQGPL-AYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQME 94
PG G L L A E +++ D ++ +++EI+ +DQ KFLD+ARQ E
Sbjct: 36 PGNRGANNTLVDELEASFEACFASLVSQD--YVNGTDQEEIRTGVDQCIQKFLDVARQTE 93
Query: 95 AFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
FFLQKR LS KPE + KE D +L+++L RKE LI++H KI WQ +L D+
Sbjct: 94 CFFLQKRLQLSVQKPEQVEKE------DASELKNELQRKEMLIQKHLAKIHHWQQVLEDI 147
>gi|289743071|gb|ADD20283.1| mediator complex subunit 28 [Glossina morsitans morsitans]
Length = 207
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%), Gaps = 5/106 (4%)
Query: 146 VWQNLLSDL----QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQK 201
V NL+ + Q+CL LTK E +T K+EI+ E + +F+D+ARQMEAFFLQK
Sbjct: 7 VNSNLMDEFEEAFQNCLLSLTKL-EANTGSTKEEIEFEAQKTIDRFIDVARQMEAFFLQK 65
Query: 202 RFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247
RFL+S LKP+ ++K++ DLR ++ RKE L+ +HY ++ W+ L+
Sbjct: 66 RFLVSTLKPDQLIKDENHDLRIEIQRKEALLNKHYSRLEEWKACLA 111
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 12/93 (12%)
Query: 66 SLSPLE------KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMV 119
SL+ LE K+EI+ E + +F+D+ARQMEAFFLQKRFL+S LKP+ ++K+ N
Sbjct: 25 SLTKLEANTGSTKEEIEFEAQKTIDRFIDVARQMEAFFLQKRFLVSTLKPDQLIKDENH- 83
Query: 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 152
DLR ++ RKE L+ +HY ++ W+ L+
Sbjct: 84 -----DLRIEIQRKEALLNKHYSRLEEWKACLA 111
>gi|149412297|ref|XP_001512975.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Ornithorhynchus anatinus]
Length = 172
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 151 LSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKP 210
L +++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS KP
Sbjct: 43 LFQVEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLHLSVQKP 101
Query: 211 ELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249
E ++KED+ +L+++L RKE LI++H K+ WQ +L D+
Sbjct: 102 EQVIKEDVSELKNELQRKEALIQKHLGKLRQWQQVLEDI 140
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +L+++L
Sbjct: 63 DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLHLSVQKPEQVIKE------DVSELKNEL 116
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE LI++H K+ WQ +L D+
Sbjct: 117 QRKEALIQKHLGKLRQWQQVLEDI 140
>gi|387913784|gb|AFK10501.1| mediator of RNA polymerase II transcription subunit 28-like protein
[Callorhinchus milii]
Length = 168
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ + +++EI+ ++Q KFLD+ARQ E FFLQKR L+ K
Sbjct: 38 LEASFEACFASLVSQDYVNGS-DQEEIRTGVEQCIQKFLDVARQTECFFLQKRLQLAVQK 96
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +L+++L RKE LI++H K+ WQ +L D+ K P+
Sbjct: 97 PEQVIKEDVSELKNELQRKEALIQKHLSKLRHWQQVLEDINVQPKKPS 144
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ ++Q KFLD+ARQ E FFLQKR L+ KPE ++KE D+ +L+++L
Sbjct: 59 DQEEIRTGVEQCIQKFLDVARQTECFFLQKRLQLAVQKPEQVIKE------DVSELKNEL 112
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE LI++H K+ WQ +L D+
Sbjct: 113 QRKEALIQKHLSKLRHWQQVLEDI 136
>gi|427786605|gb|JAA58754.1| Putative mediator of rna polymerase ii transcription subunit
[Rhipicephalus pulchellus]
Length = 171
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 152 SDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPE 211
+ Q+CL +T D + +E+K ++Q +FLD A+QME+FFLQKR +LSA K E
Sbjct: 13 NSFQACLAAVTNPDYFYVR-DSEEVKTGVEQTIQRFLDAAKQMESFFLQKRLVLSAQKSE 71
Query: 212 LIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248
+V ED +L+++LARKE+L++++ +KI WQ+LL+D
Sbjct: 72 QMVMEDNTELKNELARKEQLLQKYNEKIHYWQSLLND 108
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%), Gaps = 6/83 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+ +E+K ++Q +FLD A+QME+FFLQKR +LSA K E MV +D +L+++L
Sbjct: 32 DSEEVKTGVEQTIQRFLDAAKQMESFFLQKRLVLSAQKSE------QMVMEDNTELKNEL 85
Query: 131 ARKEELIKRHYDKIAVWQNLLSD 153
ARKE+L++++ +KI WQ+LL+D
Sbjct: 86 ARKEQLLQKYNEKIHYWQSLLND 108
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 386 GGMGPGGLLQGPLAYLEKTTSNIGLPDGRR 415
GG G L GPLAYLE+TTSNIG+PD RR
Sbjct: 144 GGAAQG--LPGPLAYLERTTSNIGMPDPRR 171
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 37 GGMGPGGLLQGPLAYLEKTTSNIGLPDGR 65
GG G L GPLAYLE+TTSNIG+PD R
Sbjct: 144 GGAAQG--LPGPLAYLERTTSNIGMPDPR 170
>gi|321456888|gb|EFX67985.1| hypothetical protein DAPPUDRAFT_114938 [Daphnia pulex]
Length = 117
Score = 92.8 bits (229), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 61/76 (80%)
Query: 173 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELI 232
K+E++ + +Q KF+++A+Q+E FFLQ+R +S LKPE ++KED +L+ +LARK+ELI
Sbjct: 29 KEELRTDAEQNVAKFIEVAKQLETFFLQRRLQISVLKPEQLIKEDCSELKQELARKDELI 88
Query: 233 KRHYDKIAVWQNLLSD 248
K+HY+KI++W N+L +
Sbjct: 89 KKHYEKISIWLNMLGE 104
Score = 86.3 bits (212), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 61/82 (74%), Gaps = 6/82 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+E++ + +Q KF+++A+Q+E FFLQ+R +S LKPE ++KE D +L+ +LA
Sbjct: 29 KEELRTDAEQNVAKFIEVAKQLETFFLQRRLQISVLKPEQLIKE------DCSELKQELA 82
Query: 132 RKEELIKRHYDKIAVWQNLLSD 153
RK+ELIK+HY+KI++W N+L +
Sbjct: 83 RKDELIKKHYEKISIWLNMLGE 104
>gi|405954806|gb|EKC22144.1| Mediator of RNA polymerase II transcription subunit 28 [Crassostrea
gigas]
Length = 262
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 10/155 (6%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L Q+C++ LT + E + DE+K ++ + KFL+LARQ EAFFL+KR +LS K
Sbjct: 56 LEESFQNCIESLTSQ-EYFNVQDYDEVKTGMELSLQKFLELARQTEAFFLKKRLILSKQK 114
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG---WAKSPAHQGSTSSAS 266
PE +K++ DLR +L RK+ +IK+H +++ WQ +L+ + ++ Q S S
Sbjct: 115 PEQFIKDETEDLRAELERKDIMIKKHQERLQKWQAMLNSVNKGSFYSSQAQQQMSGPSGG 174
Query: 267 GTTPPNSTP----TQSG--PGISAMGGPLPGMMGG 295
P++ P T SG PG + MG M GG
Sbjct: 175 QQYNPHAVPPGPFTGSGGMPGQTHMGLSSSAMSGG 209
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Query: 52 LEKTTSNI--GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKP 109
LE++ N L + + DE+K ++ + KFL+LARQ EAFFL+KR +LS KP
Sbjct: 56 LEESFQNCIESLTSQEYFNVQDYDEVKTGMELSLQKFLELARQTEAFFLKKRLILSKQKP 115
Query: 110 ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
E +K+ + DLR +L RK+ +IK+H +++ WQ +L+ +
Sbjct: 116 EQFIKD------ETEDLRAELERKDIMIKKHQERLQKWQAMLNSV 154
>gi|346464543|gb|AEO32116.1| hypothetical protein [Amblyomma maculatum]
Length = 139
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%)
Query: 172 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEEL 231
+ +E+K ++QA KFLD A+Q++ FFLQKR LSA KPE IV EDI L++ LARK++L
Sbjct: 5 DSEEVKTGVEQAIQKFLDAAKQVDGFFLQKRLALSAQKPEQIVMEDITGLKNALARKKQL 64
Query: 232 IKRHYDKIAVWQNLLSD 248
+++ +KI WQ+LL+D
Sbjct: 65 LQKFNEKILYWQSLLND 81
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 6/87 (6%)
Query: 67 LSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDL 126
S + +E+K ++QA KFLD A+Q++ FFLQKR LSA KPE IV E DI L
Sbjct: 1 FSVHDSEEVKTGVEQAIQKFLDAAKQVDGFFLQKRLALSAQKPEQIVME------DITGL 54
Query: 127 RHDLARKEELIKRHYDKIAVWQNLLSD 153
++ LARK++L+++ +KI WQ+LL+D
Sbjct: 55 KNALARKKQLLQKFNEKILYWQSLLND 81
>gi|326919416|ref|XP_003205977.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Meleagris gallopavo]
Length = 117
Score = 86.7 bits (213), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%)
Query: 180 IDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKI 239
+DQ KFLD+ARQ E FFLQKR LS KPE ++KED+ +LR++L RKE LI++H K+
Sbjct: 16 VDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKEDVSELRNELQRKEALIQKHLSKL 75
Query: 240 AVWQNLLSDLQGWAKSPA 257
WQ +L D+ K PA
Sbjct: 76 RHWQQVLEDISVQHKKPA 93
Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 6/76 (7%)
Query: 79 IDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138
+DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L RKE LI+
Sbjct: 16 VDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNELQRKEALIQ 69
Query: 139 RHYDKIAVWQNLLSDL 154
+H K+ WQ +L D+
Sbjct: 70 KHLSKLRHWQQVLEDI 85
>gi|297292354|ref|XP_001118952.2| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Macaca mulatta]
Length = 137
Score = 85.5 bits (210), Expect = 4e-14, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKI 239
PE ++KED+ +LR++L RK+ L+++H K+
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKL 136
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 6/74 (8%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKI 144
RK+ L+++H K+
Sbjct: 123 QRKDALVQKHLTKL 136
>gi|327273271|ref|XP_003221404.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like, partial [Anolis carolinensis]
Length = 102
Score = 84.0 bits (206), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 53/77 (68%)
Query: 180 IDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKI 239
+DQ KFLD+ARQ E FFLQKR LS KPE ++KED+ +LR++L RKE LI++H K+
Sbjct: 1 VDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKEDVSELRNELQRKEALIQKHLGKL 60
Query: 240 AVWQNLLSDLQGWAKSP 256
WQ +L D+ K P
Sbjct: 61 RHWQQVLDDINIQHKKP 77
Score = 75.9 bits (185), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 6/76 (7%)
Query: 79 IDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138
+DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L RKE LI+
Sbjct: 1 VDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNELQRKEALIQ 54
Query: 139 RHYDKIAVWQNLLSDL 154
+H K+ WQ +L D+
Sbjct: 55 KHLGKLRHWQQVLDDI 70
>gi|301619535|ref|XP_002939145.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 28-like [Xenopus (Silurana)
tropicalis]
Length = 164
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 10/110 (9%)
Query: 149 NLLSDLQSCLQV----LTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
L+ DL+S + L +D V+ T +E++ ++Q FLD+ARQ E F LQK+
Sbjct: 34 TLVDDLESSFEAYFASLVSQDYVNGT---EELRSGVEQCIQTFLDVARQTECFLLQKKLQ 90
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254
LS KPE ++ ED+ +LR++L RKE LI++H K+ + +L ++ G K
Sbjct: 91 LSVQKPEQVIXEDVSELRNELQRKEALIQKHLTKL---RXVLEEINGQHK 137
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132
+E++ ++Q FLD+ARQ E F LQK+ LS KPE ++ E D+ +LR++L R
Sbjct: 60 EELRSGVEQCIQTFLDVARQTECFLLQKKLQLSVQKPEQVIXE------DVSELRNELQR 113
Query: 133 KEELIKRHYDKI 144
KE LI++H K+
Sbjct: 114 KEALIQKHLTKL 125
>gi|198437927|ref|XP_002124297.1| PREDICTED: similar to tumor-related protein [Ciona intestinalis]
Length = 142
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 145 AVWQNLLSDLQSCL-QVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF 203
+V +L S +SC+ Q ++ E V T +DE + ++ A +FL LARQ EA+FL++R
Sbjct: 9 SVIDDLESAFRSCISQFVSDEPSVGVT-HQDEQRPTVEFAVNEFLKLARQTEAYFLKERA 67
Query: 204 LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249
L+ +PEL+++EDI +L +L RK++ I+ H +K+ W+N L +
Sbjct: 68 SLAMKQPELVLQEDIEELETELQRKDDAIRNHGEKLQQWKNALHQI 113
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 6/94 (6%)
Query: 61 LPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVT 120
+ D S+ +DE + ++ A +FL LARQ EA+FL++R L+ +PEL+++E
Sbjct: 26 VSDEPSVGVTHQDEQRPTVEFAVNEFLKLARQTEAYFLKERASLAMKQPELVLQE----- 80
Query: 121 KDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
DI +L +L RK++ I+ H +K+ W+N L +
Sbjct: 81 -DIEELETELQRKDDAIRNHGEKLQQWKNALHQI 113
>gi|72007697|ref|XP_786267.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Strongylocentrotus purpuratus]
Length = 211
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++CL L ++ V + ++ E+K +DQ+ ++ +LA++ E FFLQ++ L++ K
Sbjct: 17 LEAAFKACLSPLVAQENVHVS-DQVELKTSVDQSMQRYQELAKETENFFLQRQMLMATTK 75
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
PE I+KE+I +L+ +L RK L+++ K+ W +L L+
Sbjct: 76 PESIIKEEIDELKAELTRKNALLQKQQTKVNNWLGILQSLE 116
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARK 133
E+K +DQ+ ++ +LA++ E FFLQ++ L++ KPE I+KE +I +L+ +L RK
Sbjct: 41 ELKTSVDQSMQRYQELAKETENFFLQRQMLMATTKPESIIKE------EIDELKAELTRK 94
Query: 134 EELIKRHYDKIAVWQNLLSDLQS 156
L+++ K+ W +L L+
Sbjct: 95 NALLQKQQTKVNNWLGILQSLEC 117
>gi|403271336|ref|XP_003927584.1| PREDICTED: mediator of RNA polymerase II transcription subunit 28
[Saimiri boliviensis boliviensis]
Length = 157
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D VS T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVSGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKED 217
KPE ++KE+
Sbjct: 106 KPEQVIKEE 114
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKE 115
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE 113
>gi|156389116|ref|XP_001634838.1| predicted protein [Nematostella vectensis]
gi|156221925|gb|EDO42775.1| predicted protein [Nematostella vectensis]
Length = 133
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 57/102 (55%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
+L S LQSC+ +L + + ++ ++ KFL A+ +EA FL K+ +
Sbjct: 8 SLESSLQSCVSLLLSNEGIEKGQHHNDNTKGVEFTITKFLKNAQALEADFLNKQMYIRLN 67
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+P+ K+++ L+ +LA+KEEL+ + +++ W +L DLQ
Sbjct: 68 QPQETTKQEVGHLKTELAQKEELLNKLSERVDYWNKILDDLQ 109
Score = 44.3 bits (103), Expect = 0.11, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 85 KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144
KFL A+ +EA FL K+ + +P+ K+ ++ L+ +LA+KEEL+ + +++
Sbjct: 45 KFLKNAQALEADFLNKQMYIRLNQPQETTKQ------EVGHLKTELAQKEELLNKLSERV 98
Query: 145 AVWQNLLSDLQ 155
W +L DLQ
Sbjct: 99 DYWNKILDDLQ 109
>gi|339233694|ref|XP_003381964.1| hypothetical protein Tsp_11065 [Trichinella spiralis]
gi|316979151|gb|EFV61979.1| hypothetical protein Tsp_11065 [Trichinella spiralis]
Length = 168
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 7/106 (6%)
Query: 146 VWQNLLSDLQSCLQVLTKEDEV---STTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKR 202
V N ++SCL +L+ V S +E DEIK + AT + ++ AR+ E F++
Sbjct: 8 VINNFRQAVKSCLTLLS----VPVKSRHIEADEIKTTAEVATHRLIEAARRSERHFVRLY 63
Query: 203 FLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248
L SA PE ++KE+I +++ ++ RK+ ++ +H +K+ W+ +LS+
Sbjct: 64 ALFSAYCPEEVLKEEINEMKQEIERKKNMLLKHEEKMIAWEQILSE 109
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
+E DEIK + AT + ++ AR+ E F++ L SA PE ++KE +I +++ +
Sbjct: 32 IEADEIKTTAEVATHRLIEAARRSERHFVRLYALFSAYCPEEVLKE------EINEMKQE 85
Query: 130 LARKEELIKRHYDKIAVWQNLLSDLQS 156
+ RK+ ++ +H +K+ W+ +LS+ ++
Sbjct: 86 IERKKNMLLKHEEKMIAWEQILSEAET 112
>gi|301786068|ref|XP_002928450.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 28-like [Ailuropoda melanoleuca]
Length = 170
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
+L S ++C + V+ ++ EI+ +DQ F L + + FFLQK L
Sbjct: 44 DLESYFEACFASFVSQGYVNGR-DQQEIRTGVDQCIRNFWILXDR-QCFFLQKILQLFVQ 101
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVW 242
+PE ++KED+ +LR++L RK+ L+++H K+ W
Sbjct: 102 EPEQVIKEDVSELRNELQRKDALVQKHLTKLRHW 135
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 35 GPGGMGPGGLLQGPLAYLEKTTSNI---GLPDGRSLSPLEKDEIKLEIDQATLKFLDLAR 91
GP + L+ +Y E ++ G +GR ++ EI+ +DQ F L
Sbjct: 32 GPSRISTSTLVDDLESYFEACFASFVSQGYVNGR-----DQQEIRTGVDQCIRNFWILXD 86
Query: 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVW 147
+ + FFLQK L +PE ++KE D+ +LR++L RK+ L+++H K+ W
Sbjct: 87 R-QCFFLQKILQLFVQEPEQVIKE------DVSELRNELQRKDALVQKHLTKLRHW 135
>gi|84617508|emb|CAI44745.1| MED28 protein [Bos taurus]
Length = 44
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 197 FFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKI 239
FFLQKR LS KPE ++KED+ +LR++L RK+ L+++H K+
Sbjct: 2 FFLQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKL 44
Score = 47.8 bits (112), Expect = 0.010, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 6/49 (12%)
Query: 96 FFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144
FFLQKR LS KPE ++KE D+ +LR++L RK+ L+++H K+
Sbjct: 2 FFLQKRLQLSVQKPEQVIKE------DVSELRNELQRKDALVQKHLTKL 44
>gi|308501929|ref|XP_003113149.1| CRE-RGR-1 protein [Caenorhabditis remanei]
gi|308265450|gb|EFP09403.1| CRE-RGR-1 protein [Caenorhabditis remanei]
Length = 1546
Score = 47.0 bits (110), Expect = 0.016, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 55/144 (38%), Gaps = 29/144 (20%)
Query: 252 WAKSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGM 311
W S + SS + T + + + PG A G PG + A PGS MQP S M
Sbjct: 1382 WNPSNRDEPIISSVAPTANYANPGSVAAPGSIAPGSVAPGSVAP-ASQQPGSIMQPGSMM 1440
Query: 312 PQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPS 371
Q Q +H Q GGPPS PSS GP P
Sbjct: 1441 GPQSVNAH-QYGMHRQM--------GGPPSMQMNPSS---------------VGPQPGSV 1476
Query: 372 AGPGGMGGPGNLGPGGMGPGGLLQ 395
PG +GGPG++ M PG Q
Sbjct: 1477 GMPGSVGGPGSM----MNPGSHQQ 1496
>gi|288558846|sp|Q61IR6.3|MED14_CAEBR RecName: Full=Mediator of RNA polymerase II transcription subunit 14;
AltName: Full=Mediator complex subunit 14; AltName:
Full=Mediator complex subunit rgr-1
Length = 1540
Score = 42.7 bits (99), Expect = 0.29, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 52/132 (39%), Gaps = 34/132 (25%)
Query: 277 QSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQ--------- 327
Q P IS + P P + PGS P SG PQQQQ Q MQ
Sbjct: 1385 QDEPIISTVAPPAPQQYVNPPSVAPGSIAPPGSGAPQQQQHQQQPPPSVMQPGSMMGPQS 1444
Query: 328 -HMQQQGMGP--GGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLG 384
+ Q GM GGPPS PSS GPP PG +G PG++G
Sbjct: 1445 VNAHQYGMHRQMGGPPSMQMNPSS---------------VGPP------PGSVGMPGSVG 1483
Query: 385 PGG-MGPGGLLQ 395
PG M PG Q
Sbjct: 1484 PGSMMNPGSHQQ 1495
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,554,965,195
Number of Sequences: 23463169
Number of extensions: 508510227
Number of successful extensions: 4527532
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4576
Number of HSP's successfully gapped in prelim test: 30190
Number of HSP's that attempted gapping in prelim test: 2986256
Number of HSP's gapped (non-prelim): 1111136
length of query: 415
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 270
effective length of database: 8,957,035,862
effective search space: 2418399682740
effective search space used: 2418399682740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)