BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10214
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17P98|MED28_AEDAE Mediator of RNA polymerase II transcription subunit 28 OS=Aedes
aegypti GN=MED28 PE=3 SV=1
Length = 184
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 91/110 (82%), Gaps = 5/110 (4%)
Query: 149 NLLSDL----QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 204
NL+ +L QSC+ LTKE E +T ++KDEIKLE+DQ TLKF+DLARQMEAFFLQKRFL
Sbjct: 10 NLVDELEEAFQSCIHALTKE-ESATGVDKDEIKLEVDQTTLKFIDLARQMEAFFLQKRFL 68
Query: 205 LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254
LSALKP+L++KE+ DL+ ++ARK+ELI++HY+KI W+NLLSD Q + K
Sbjct: 69 LSALKPDLLLKEENFDLKQEIARKDELIRKHYEKIESWKNLLSDQQNYNK 118
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 77/97 (79%), Gaps = 6/97 (6%)
Query: 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMV 119
L S + ++KDEIKLE+DQ TLKF+DLARQMEAFFLQKRFLLSALKP+L++KE N
Sbjct: 25 ALTKEESATGVDKDEIKLEVDQTTLKFIDLARQMEAFFLQKRFLLSALKPDLLLKEENF- 83
Query: 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156
DL+ ++ARK+ELI++HY+KI W+NLLSD Q+
Sbjct: 84 -----DLKQEIARKDELIRKHYEKIESWKNLLSDQQN 115
>sp|Q294G7|MED28_DROPS Mediator of RNA polymerase II transcription subunit 28
OS=Drosophila pseudoobscura pseudoobscura GN=MED28 PE=3
SV=1
Length = 190
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 12/153 (7%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLSLTKQEPNSGT-NKEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKS----PAHQGSTSSASGTT 269
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q + P + G SG
Sbjct: 78 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQQGVHNRPTPPINPGMLQGPSGMQ 137
Query: 270 PPNSTPTQSGPGISAMGGPLPGM-MGGMAPIVP 301
P G G+ G +PGM GGM+P+ P
Sbjct: 138 QP------MGGGVPPRPGLMPGMPPGGMSPVGP 164
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 63/84 (75%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKEALLQKHYNRLEEWKACLSDIQ 114
>sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcription subunit 28
OS=Drosophila melanogaster GN=MED28 PE=1 SV=1
Length = 189
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213
QSCL LTK++ S T K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP ++
Sbjct: 19 FQSCLLTLTKQEPNSGT-NKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYML 77
Query: 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
+K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 78 IKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 6/84 (7%)
Query: 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131
K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL ++
Sbjct: 37 KEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLSIEIQ 90
Query: 132 RKEELIKRHYDKIAVWQNLLSDLQ 155
RKE L+++HY+++ W+ LSD+Q
Sbjct: 91 RKEALLQKHYNRLEEWKACLSDIQ 114
>sp|Q9H204|MED28_HUMAN Mediator of RNA polymerase II transcription subunit 28 OS=Homo
sapiens GN=MED28 PE=1 SV=1
Length = 178
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KPE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADIPQGSLAYLE 165
Query: 264 SASGTTPPNSTPT 276
AS P PT
Sbjct: 166 QASANIPAPLKPT 178
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>sp|Q2TBN4|MED28_BOVIN Mediator of RNA polymerase II transcription subunit 28 OS=Bos
taurus GN=MED28 PE=2 SV=1
Length = 178
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIKKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINMQHKKPADIPQGSLAYLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIKKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>sp|A4IIZ9|MED28_XENTR Mediator of RNA polymerase II transcription subunit 28 OS=Xenopus
tropicalis GN=med28 PE=2 SV=1
Length = 169
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
+L S ++C L +D V+ T +++EI+ ++Q KFLD+ARQ E FFLQKR LS
Sbjct: 38 DLESSFEACFASLVSQDYVNGT-DQEEIRTGVEQCIQKFLDVARQTECFFLQKRLQLSVQ 96
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH 258
KPE ++KED+ +LR++L RKE LI++H K+ WQ +L ++ G K +
Sbjct: 97 KPEQVIKEDVSELRNELQRKEALIQKHLTKLRSWQQVLEEINGQHKKTSE 146
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 36 PGGMGPGGLLQGPL-AYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQME 94
PG P L L + E +++ D ++ +++EI+ ++Q KFLD+ARQ E
Sbjct: 26 PGAKNPSSTLVDDLESSFEACFASLVSQDY--VNGTDQEEIRTGVEQCIQKFLDVARQTE 83
Query: 95 AFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
FFLQKR LS KPE ++KE D+ +LR++L RKE LI++H K+ WQ +L ++
Sbjct: 84 CFFLQKRLQLSVQKPEQVIKE------DVSELRNELQRKEALIQKHLTKLRSWQQVLEEI 137
>sp|P68943|MED28_RAT Mediator of RNA polymerase II transcription subunit 28 OS=Rattus
norvegicus GN=Med28 PE=1 SV=1
Length = 178
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 208
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS
Sbjct: 47 ELESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQ 105
Query: 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS--- 263
KP+ ++KED+ +LR +L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 106 KPDQVIKEDVSELRSELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADMPQGSLAYLE 165
Query: 264 SASGTTP 270
AS P
Sbjct: 166 QASANIP 172
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR +L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRSEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>sp|Q920D3|MED28_MOUSE Mediator of RNA polymerase II transcription subunit 28 OS=Mus
musculus GN=Med28 PE=2 SV=2
Length = 178
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAH--QGSTS---S 264
P+ ++KED+ +LR +L RK+ L+++H K+ WQ +L D+ K PA QGS +
Sbjct: 107 PDQVIKEDVSELRSELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADMPQGSLAFLEQ 166
Query: 265 ASGTTP 270
AS P
Sbjct: 167 ASANIP 172
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR +L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRSEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
>sp|Q5RKN3|MED28_DANRE Mediator of RNA polymerase II transcription subunit 28 OS=Danio
rerio GN=med28 PE=2 SV=1
Length = 179
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 49 LEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 107
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE + KED +L+++L RKE LI++H KI WQ +L D+ K P
Sbjct: 108 PEQVEKEDASELKNELQRKEMLIQKHLAKIHHWQQVLEDINVQHKKPT 155
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 9/120 (7%)
Query: 36 PGGMGPGGLLQGPL-AYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQME 94
PG G L L A E +++ D ++ +++EI+ +DQ KFLD+ARQ E
Sbjct: 36 PGNRGANNTLVDELEASFEACFASLVSQD--YVNGTDQEEIRTGVDQCIQKFLDVARQTE 93
Query: 95 AFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154
FFLQKR LS KPE + KE D +L+++L RKE LI++H KI WQ +L D+
Sbjct: 94 CFFLQKRLQLSVQKPEQVEKE------DASELKNELQRKEMLIQKHLAKIHHWQQVLEDI 147
>sp|Q61IR6|MED14_CAEBR Mediator of RNA polymerase II transcription subunit 14
OS=Caenorhabditis briggsae GN=rgr-1 PE=3 SV=3
Length = 1540
Score = 42.7 bits (99), Expect = 0.005, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 52/132 (39%), Gaps = 34/132 (25%)
Query: 277 QSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQ--------- 327
Q P IS + P P + PGS P SG PQQQQ Q MQ
Sbjct: 1385 QDEPIISTVAPPAPQQYVNPPSVAPGSIAPPGSGAPQQQQHQQQPPPSVMQPGSMMGPQS 1444
Query: 328 -HMQQQGMGP--GGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLG 384
+ Q GM GGPPS PSS GPP PG +G PG++G
Sbjct: 1445 VNAHQYGMHRQMGGPPSMQMNPSS---------------VGPP------PGSVGMPGSVG 1483
Query: 385 PGG-MGPGGLLQ 395
PG M PG Q
Sbjct: 1484 PGSMMNPGSHQQ 1495
>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis
thaliana GN=At4g32640 PE=1 SV=3
Length = 1080
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 336 PGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPG-GMGPGGLL 394
PGGP + P SSG GP G AGPP P + P G P +G G M P G++
Sbjct: 135 PGGPVAQPAASSSGFPAFGPS---GSVAAGPP--PGSRPMAFGSPPPVGSGMSMPPSGMI 189
Query: 395 QGPLAYLEKTTSNIGLPDG 413
GP++ + + G P G
Sbjct: 190 GGPVSNGHQMVGSGGFPRG 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,425,374
Number of Sequences: 539616
Number of extensions: 11959252
Number of successful extensions: 130547
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 1758
Number of HSP's that attempted gapping in prelim test: 60237
Number of HSP's gapped (non-prelim): 43554
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)