Query psy10214
Match_columns 415
No_of_seqs 93 out of 109
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 20:45:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11594 Med28: Mediator compl 99.9 6.9E-27 1.5E-31 199.6 10.9 78 74-157 1-78 (106)
2 PF11594 Med28: Mediator compl 99.9 2.3E-23 5.1E-28 178.0 11.0 86 175-260 1-86 (106)
3 KOG1924|consensus 97.8 0.0031 6.7E-08 70.1 22.0 40 232-277 497-536 (1102)
4 PF05983 Med7: MED7 protein; 97.0 0.0082 1.8E-07 54.9 11.0 56 192-247 107-162 (162)
5 KOG0570|consensus 96.3 0.056 1.2E-06 52.3 11.8 59 193-251 110-168 (223)
6 KOG2675|consensus 96.1 0.18 3.9E-06 53.4 15.0 131 78-249 56-206 (480)
7 PF08581 Tup_N: Tup N-terminal 94.8 0.054 1.2E-06 44.9 4.9 76 148-230 3-78 (79)
8 KOG4368|consensus 94.5 5.5 0.00012 44.2 20.1 25 72-96 81-106 (757)
9 PHA02562 46 endonuclease subun 94.3 5.1 0.00011 41.5 18.8 42 120-161 240-281 (562)
10 PRK11637 AmiB activator; Provi 94.2 7.8 0.00017 39.8 21.2 70 72-143 49-118 (428)
11 KOG3866|consensus 94.1 2.3 5E-05 44.2 15.5 124 125-250 199-380 (442)
12 KOG1924|consensus 93.5 2.4 5.1E-05 48.4 15.4 37 266-302 539-576 (1102)
13 cd00176 SPEC Spectrin repeats, 93.3 4.8 0.0001 34.5 18.9 26 83-108 2-27 (213)
14 PF04652 DUF605: Vta1 like; I 93.2 2.8 6E-05 41.8 14.3 83 81-163 1-93 (380)
15 PF04156 IncA: IncA protein; 93.2 6.4 0.00014 35.6 16.6 34 215-248 157-190 (191)
16 KOG4674|consensus 92.9 1.5 3.2E-05 53.3 13.6 118 113-243 1221-1341(1822)
17 KOG0964|consensus 92.8 4 8.8E-05 47.4 16.1 78 73-159 695-772 (1200)
18 KOG3091|consensus 92.3 5 0.00011 43.4 15.4 108 143-250 377-501 (508)
19 PRK09039 hypothetical protein; 92.2 5.5 0.00012 40.5 14.9 46 204-249 131-177 (343)
20 PF03904 DUF334: Domain of unk 92.0 8.3 0.00018 38.1 15.3 75 172-246 72-150 (230)
21 COG1196 Smc Chromosome segrega 92.0 22 0.00048 41.3 21.1 9 218-226 399-407 (1163)
22 PRK11637 AmiB activator; Provi 91.8 17 0.00037 37.3 20.4 8 348-355 329-336 (428)
23 PF06637 PV-1: PV-1 protein (P 91.1 18 0.0004 38.4 17.5 58 212-272 352-409 (442)
24 PF15469 Sec5: Exocyst complex 91.0 12 0.00025 33.9 14.8 84 73-159 2-88 (182)
25 COG1196 Smc Chromosome segrega 90.9 31 0.00067 40.2 20.9 67 77-144 196-262 (1163)
26 KOG2391|consensus 90.7 24 0.00052 37.0 22.0 66 75-148 207-273 (365)
27 KOG1883|consensus 90.6 1.7 3.8E-05 50.9 10.5 27 304-330 1430-1456(1517)
28 TIGR02169 SMC_prok_A chromosom 90.4 34 0.00073 38.2 20.7 37 215-251 874-910 (1164)
29 PF08317 Spc7: Spc7 kinetochor 90.2 14 0.0003 37.0 15.5 37 215-251 229-265 (325)
30 KOG0977|consensus 89.9 30 0.00065 38.0 18.6 63 76-138 119-186 (546)
31 PTZ00186 heat shock 70 kDa pre 89.8 2.4 5.1E-05 46.5 10.5 61 188-250 553-620 (657)
32 KOG0993|consensus 89.5 18 0.00038 39.0 16.0 52 89-141 3-58 (542)
33 PF13779 DUF4175: Domain of un 89.5 44 0.00096 38.3 22.5 127 117-250 465-615 (820)
34 PF01213 CAP_N: Adenylate cycl 89.5 1.9 4E-05 43.7 8.8 104 76-203 50-171 (312)
35 KOG0996|consensus 89.4 17 0.00038 43.1 17.1 30 221-250 1017-1046(1293)
36 PF07083 DUF1351: Protein of u 89.4 20 0.00044 34.2 15.3 65 67-148 12-77 (215)
37 TIGR02168 SMC_prok_B chromosom 89.4 39 0.00085 37.4 21.5 16 83-98 157-172 (1179)
38 smart00787 Spc7 Spc7 kinetocho 89.2 15 0.00033 37.2 14.9 39 213-251 222-260 (312)
39 PRK04863 mukB cell division pr 89.1 26 0.00056 42.5 18.8 32 122-153 311-342 (1486)
40 KOG0995|consensus 88.8 43 0.00093 37.1 20.1 118 73-199 265-392 (581)
41 KOG4368|consensus 88.7 21 0.00045 39.9 16.2 28 128-155 87-114 (757)
42 PTZ00009 heat shock 70 kDa pro 88.6 5.3 0.00011 43.5 12.0 63 189-251 539-610 (653)
43 KOG3227|consensus 88.6 5.7 0.00012 39.1 10.9 12 344-355 164-175 (231)
44 PRK05771 V-type ATP synthase s 88.6 7.2 0.00016 42.2 12.9 45 114-158 93-140 (646)
45 KOG4302|consensus 88.4 21 0.00047 39.9 16.5 81 73-161 236-324 (660)
46 PF12128 DUF3584: Protein of u 88.4 32 0.0007 40.3 18.7 23 69-91 599-621 (1201)
47 TIGR00606 rad50 rad50. This fa 88.4 32 0.0007 40.5 18.7 16 71-86 823-838 (1311)
48 cd07639 BAR_ACAP1 The Bin/Amph 88.3 16 0.00035 35.1 13.7 68 79-159 59-126 (200)
49 PF15290 Syntaphilin: Golgi-lo 88.2 7.4 0.00016 39.7 11.8 53 213-265 128-198 (305)
50 cd07637 BAR_ACAP3 The Bin/Amph 87.6 26 0.00056 33.4 14.6 108 119-235 7-117 (200)
51 PF12128 DUF3584: Protein of u 87.5 67 0.0014 37.8 20.9 42 215-256 419-461 (1201)
52 PRK05560 DNA gyrase subunit A; 87.4 12 0.00027 42.1 14.2 128 107-251 340-472 (805)
53 KOG0999|consensus 87.2 41 0.00089 37.6 17.3 39 173-213 155-194 (772)
54 cd07638 BAR_ACAP2 The Bin/Amph 86.5 25 0.00054 33.8 13.8 108 119-236 7-118 (200)
55 cd07603 BAR_ACAPs The Bin/Amph 86.3 22 0.00047 33.8 13.2 61 179-239 58-121 (200)
56 PF05600 DUF773: Protein of un 85.9 24 0.00052 38.0 14.8 141 81-249 351-493 (507)
57 PF11867 DUF3387: Domain of un 85.8 36 0.00077 34.2 15.1 26 226-251 201-226 (335)
58 KOG4274|consensus 85.6 8.3 0.00018 42.8 11.2 13 189-201 32-44 (742)
59 PF07739 TipAS: TipAS antibiot 85.5 2.2 4.7E-05 35.1 5.5 92 100-198 21-118 (118)
60 PF07989 Microtub_assoc: Micro 85.2 3.4 7.4E-05 33.9 6.4 50 92-141 20-70 (75)
61 KOG4592|consensus 84.9 3 6.5E-05 46.3 7.6 31 381-412 219-249 (728)
62 PF12252 SidE: Dot/Icm substra 84.8 13 0.00028 43.9 12.8 191 43-249 1175-1418(1439)
63 cd00890 Prefoldin Prefoldin is 84.7 7.9 0.00017 32.5 8.6 35 215-249 93-127 (129)
64 cd00187 TOP4c DNA Topoisomeras 84.4 37 0.0008 36.1 15.1 47 107-158 315-361 (445)
65 PF05427 FIBP: Acidic fibrobla 84.2 18 0.00038 37.9 12.4 80 119-201 229-325 (361)
66 KOG1854|consensus 84.1 79 0.0017 35.6 18.5 113 77-205 325-439 (657)
67 KOG2129|consensus 84.0 69 0.0015 34.8 19.3 36 214-249 283-318 (552)
68 PF13514 AAA_27: AAA domain 83.8 93 0.002 36.2 22.4 165 82-250 748-930 (1111)
69 PF10168 Nup88: Nuclear pore c 83.7 83 0.0018 35.5 19.8 86 71-161 533-623 (717)
70 KOG0964|consensus 83.7 51 0.0011 39.0 16.6 67 162-241 377-443 (1200)
71 PF07426 Dynactin_p22: Dynacti 83.6 39 0.00085 31.7 13.6 90 143-246 85-174 (174)
72 KOG0250|consensus 83.5 71 0.0015 37.8 17.9 51 112-162 279-329 (1074)
73 PRK10350 hypothetical protein; 83.5 0.29 6.3E-06 44.7 -0.5 46 309-354 52-105 (145)
74 PF04108 APG17: Autophagy prot 83.5 60 0.0013 33.8 17.8 53 45-99 219-273 (412)
75 PF11657 Activator-TraM: Trans 83.5 30 0.00065 31.9 12.3 71 121-200 3-90 (144)
76 PF06248 Zw10: Centromere/kine 83.4 50 0.0011 35.5 15.9 34 71-104 26-59 (593)
77 PF10174 Cast: RIM-binding pro 83.3 91 0.002 35.7 20.2 28 115-142 337-364 (775)
78 cd00632 Prefoldin_beta Prefold 83.3 26 0.00057 29.5 11.7 32 111-142 3-34 (105)
79 TIGR01061 parC_Gpos DNA topois 83.3 15 0.00033 41.2 12.3 130 108-251 338-469 (738)
80 PF09731 Mitofilin: Mitochondr 83.3 59 0.0013 34.6 16.2 18 125-142 311-328 (582)
81 TIGR01843 type_I_hlyD type I s 83.2 49 0.0011 32.6 19.4 34 122-155 138-171 (423)
82 PF09602 PhaP_Bmeg: Polyhydrox 83.1 43 0.00093 31.8 14.6 110 77-192 15-135 (165)
83 PHA02592 52 DNA topisomerase I 83.0 30 0.00066 36.8 13.9 121 108-250 315-438 (439)
84 KOG4552|consensus 83.0 40 0.00087 33.7 13.6 18 98-115 9-26 (272)
85 PF13870 DUF4201: Domain of un 83.0 37 0.0008 30.9 14.4 117 118-249 3-124 (177)
86 PF11221 Med21: Subunit 21 of 82.1 17 0.00037 32.5 10.2 106 44-161 18-141 (144)
87 KOG0977|consensus 82.1 45 0.00097 36.7 14.9 54 108-161 107-160 (546)
88 KOG0963|consensus 81.7 96 0.0021 34.8 18.9 57 346-405 459-515 (629)
89 PF07798 DUF1640: Protein of u 81.6 43 0.00093 30.8 17.3 13 215-227 137-149 (177)
90 TIGR00634 recN DNA repair prot 81.6 80 0.0017 33.9 16.9 27 137-163 214-240 (563)
91 PF01920 Prefoldin_2: Prefoldi 81.5 19 0.00042 29.2 9.4 35 215-249 68-102 (106)
92 PRK12758 DNA topoisomerase IV 81.0 36 0.00079 39.3 14.3 124 107-250 328-466 (869)
93 PF00521 DNA_topoisoIV: DNA gy 81.0 13 0.00027 38.7 10.1 111 107-241 303-416 (426)
94 COG3937 Uncharacterized conser 80.4 32 0.00069 30.7 10.9 99 136-239 7-106 (108)
95 PRK14959 DNA polymerase III su 80.3 73 0.0016 35.6 16.0 19 280-298 381-399 (624)
96 cd07666 BAR_SNX7 The Bin/Amphi 80.2 65 0.0014 31.9 15.8 64 90-159 36-99 (243)
97 PF13166 AAA_13: AAA domain 80.0 93 0.002 33.6 17.3 9 122-130 330-338 (712)
98 PF09789 DUF2353: Uncharacteri 79.9 78 0.0017 32.7 15.6 27 70-96 23-49 (319)
99 KOG0979|consensus 79.9 1.1E+02 0.0025 36.1 17.7 171 71-249 703-907 (1072)
100 PF05667 DUF812: Protein of un 79.4 1.1E+02 0.0023 34.0 19.3 24 73-96 397-420 (594)
101 PF08580 KAR9: Yeast cortical 79.4 51 0.0011 37.0 14.6 28 213-240 127-154 (683)
102 KOG3870|consensus 79.2 19 0.00042 38.4 10.8 91 108-205 55-150 (434)
103 KOG1850|consensus 78.5 70 0.0015 33.7 14.2 21 143-163 166-186 (391)
104 KOG4673|consensus 78.5 1.4E+02 0.0029 34.6 17.5 46 215-260 586-635 (961)
105 PF09730 BicD: Microtubule-ass 78.4 1.2E+02 0.0027 34.5 17.2 19 86-104 21-39 (717)
106 PF04849 HAP1_N: HAP1 N-termin 78.4 32 0.0007 35.3 11.8 34 107-140 97-130 (306)
107 cd00584 Prefoldin_alpha Prefol 78.2 3.4 7.4E-05 35.4 4.3 41 110-150 2-42 (129)
108 PF07303 Occludin_ELL: Occludi 78.1 9.2 0.0002 32.9 6.8 72 74-148 26-100 (101)
109 PF03904 DUF334: Domain of unk 78.0 24 0.00052 35.0 10.3 75 71-150 72-149 (230)
110 PF09726 Macoilin: Transmembra 77.8 12 0.00027 41.7 9.4 27 215-241 628-654 (697)
111 PF09738 DUF2051: Double stran 77.7 29 0.00062 35.3 11.2 23 213-235 151-173 (302)
112 TIGR03185 DNA_S_dndD DNA sulfu 77.6 1E+02 0.0022 33.6 16.1 8 242-249 511-518 (650)
113 PF04156 IncA: IncA protein; 77.5 55 0.0012 29.6 13.8 16 97-112 59-74 (191)
114 KOG3227|consensus 77.5 34 0.00074 33.9 11.1 10 183-192 24-33 (231)
115 KOG0250|consensus 77.1 1.7E+02 0.0036 35.0 21.3 152 77-250 207-385 (1074)
116 PF08580 KAR9: Yeast cortical 77.1 1.3E+02 0.0029 33.8 17.1 59 75-134 211-269 (683)
117 cd07601 BAR_APPL The Bin/Amphi 77.0 75 0.0016 30.9 14.5 114 119-237 7-123 (215)
118 KOG3648|consensus 76.9 0.83 1.8E-05 51.0 0.2 14 390-403 127-140 (1179)
119 KOG3850|consensus 76.6 75 0.0016 34.1 14.0 124 22-161 233-365 (455)
120 TIGR00606 rad50 rad50. This fa 75.8 1.8E+02 0.0039 34.6 19.1 48 117-164 329-376 (1311)
121 PRK05561 DNA topoisomerase IV 75.8 55 0.0012 36.9 13.7 44 107-155 350-393 (742)
122 KOG0962|consensus 75.2 1.8E+02 0.004 35.3 18.0 37 215-251 919-955 (1294)
123 PF05667 DUF812: Protein of un 75.2 1.4E+02 0.003 33.1 16.9 20 215-234 453-472 (594)
124 PRK04863 mukB cell division pr 75.1 2.1E+02 0.0046 35.1 22.1 35 215-249 441-475 (1486)
125 PF08317 Spc7: Spc7 kinetochor 75.0 96 0.0021 31.1 20.9 36 214-249 214-249 (325)
126 TIGR02132 phaR_Bmeg polyhydrox 74.7 29 0.00063 33.5 9.7 49 192-240 89-138 (189)
127 PF11559 ADIP: Afadin- and alp 74.5 61 0.0013 28.7 15.2 43 46-89 1-43 (151)
128 KOG0994|consensus 74.4 52 0.0011 39.7 13.3 14 42-55 1474-1487(1758)
129 COG4942 Membrane-bound metallo 74.4 1.1E+02 0.0024 32.8 14.8 8 367-374 299-306 (420)
130 PF09660 DUF2397: Protein of u 74.0 1.1E+02 0.0024 32.8 14.9 150 92-241 16-218 (486)
131 COG5185 HEC1 Protein involved 73.9 67 0.0014 35.4 13.1 37 119-155 262-298 (622)
132 KOG2911|consensus 73.6 82 0.0018 34.0 13.6 65 74-146 230-294 (439)
133 KOG4674|consensus 73.6 2.5E+02 0.0055 35.4 19.9 94 71-165 1265-1362(1822)
134 PRK11115 transcriptional regul 73.6 76 0.0017 29.3 16.0 56 75-131 14-69 (236)
135 cd07307 BAR The Bin/Amphiphysi 73.2 56 0.0012 27.6 15.6 114 126-251 5-119 (194)
136 KOG0946|consensus 73.2 1.2E+02 0.0026 35.4 15.4 36 216-251 904-939 (970)
137 PRK11546 zraP zinc resistance 73.0 27 0.00059 32.2 8.8 67 74-143 47-118 (143)
138 PF07462 MSP1_C: Merozoite sur 72.7 1.6E+02 0.0035 32.9 15.7 59 71-139 62-120 (574)
139 PRK10929 putative mechanosensi 72.6 2.2E+02 0.0047 34.1 18.3 54 194-248 187-240 (1109)
140 cd07604 BAR_ASAPs The Bin/Amph 72.6 95 0.0021 30.0 14.9 94 122-222 10-106 (215)
141 TIGR00293 prefoldin, archaeal 72.4 19 0.0004 30.8 7.2 37 111-147 3-39 (126)
142 KOG0577|consensus 72.3 1.9E+02 0.0041 33.4 17.1 52 84-142 749-801 (948)
143 PRK03918 chromosome segregatio 71.7 1.7E+02 0.0036 32.4 22.1 50 122-171 392-441 (880)
144 PF11221 Med21: Subunit 21 of 71.6 76 0.0017 28.5 13.2 74 173-249 64-137 (144)
145 PF04437 RINT1_TIP1: RINT-1 / 71.3 36 0.00079 35.7 10.5 58 190-247 387-446 (494)
146 TIGR01063 gyrA DNA gyrase, A s 71.3 76 0.0016 36.1 13.5 128 107-251 337-469 (800)
147 PF12238 MSA-2c: Merozoite sur 71.1 1.1E+02 0.0023 30.0 13.7 16 109-124 18-33 (205)
148 PRK03918 chromosome segregatio 71.0 1.7E+02 0.0038 32.3 20.4 23 113-135 192-214 (880)
149 KOG0249|consensus 70.9 43 0.00092 38.4 11.2 29 120-148 90-118 (916)
150 PRK13895 conjugal transfer pro 70.6 59 0.0013 30.4 10.4 76 148-234 45-120 (144)
151 KOG0996|consensus 70.4 2.6E+02 0.0056 34.0 20.1 47 113-159 418-464 (1293)
152 PF09728 Taxilin: Myosin-like 70.2 1.3E+02 0.0028 30.5 20.5 86 79-164 24-122 (309)
153 COG1354 scpA Rec8/ScpA/Scc1-li 70.2 85 0.0019 30.4 12.0 77 76-160 31-124 (248)
154 PF10146 zf-C4H2: Zinc finger- 70.2 60 0.0013 31.8 11.0 10 215-224 94-103 (230)
155 KOG0543|consensus 69.9 74 0.0016 33.9 12.2 135 95-250 217-357 (397)
156 cd07609 BAR_SIP3_fungi The Bin 69.9 1.1E+02 0.0024 29.6 16.5 30 82-115 64-93 (214)
157 smart00150 SPEC Spectrin repea 69.7 47 0.001 25.3 8.6 21 85-105 2-22 (101)
158 KOG4360|consensus 69.7 71 0.0015 35.4 12.3 24 116-139 106-129 (596)
159 TIGR02231 conserved hypothetic 69.5 1E+02 0.0023 32.5 13.4 36 120-155 70-105 (525)
160 PRK04778 septation ring format 69.4 1.7E+02 0.0037 31.6 17.2 37 215-251 396-432 (569)
161 KOG4098|consensus 69.1 40 0.00087 31.3 8.9 51 110-161 18-68 (140)
162 PF11498 Activator_LAG-3: Tran 69.0 1.6 3.4E-05 45.8 0.0 17 116-132 78-94 (468)
163 KOG2199|consensus 68.8 49 0.0011 35.6 10.6 16 117-132 265-280 (462)
164 PF10312 Cactin_mid: Conserved 68.8 69 0.0015 30.5 10.8 79 107-189 63-141 (191)
165 KOG4403|consensus 68.6 1.8E+02 0.004 31.9 14.8 20 228-247 406-425 (575)
166 PF13801 Metal_resist: Heavy-m 68.5 27 0.00059 27.9 7.1 61 71-140 46-106 (125)
167 PF05524 PEP-utilisers_N: PEP- 68.5 47 0.001 28.2 8.8 26 177-202 97-122 (123)
168 KOG4643|consensus 68.3 59 0.0013 38.5 11.9 36 192-229 255-291 (1195)
169 PRK09631 DNA topoisomerase IV 68.3 1.2E+02 0.0027 33.9 14.1 36 214-249 409-444 (635)
170 cd07628 BAR_Atg24p The Bin/Amp 68.2 1E+02 0.0022 28.6 14.6 15 185-199 86-100 (185)
171 PF08172 CASP_C: CASP C termin 68.2 86 0.0019 31.0 11.7 61 172-245 76-136 (248)
172 KOG0995|consensus 68.2 2.1E+02 0.0045 32.1 21.1 118 112-239 422-540 (581)
173 KOG0976|consensus 68.2 2.6E+02 0.0055 33.2 18.6 38 122-159 149-190 (1265)
174 PF04740 LXG: LXG domain of WX 68.1 96 0.0021 28.2 12.6 30 220-249 103-132 (204)
175 PF14643 DUF4455: Domain of un 67.9 1.7E+02 0.0037 31.0 18.8 55 88-142 44-100 (473)
176 KOG0579|consensus 67.9 2.5E+02 0.0053 32.9 16.9 14 192-205 974-987 (1187)
177 PF10267 Tmemb_cc2: Predicted 67.8 1.7E+02 0.0037 31.1 14.3 42 121-162 276-318 (395)
178 PF07888 CALCOCO1: Calcium bin 67.4 2.1E+02 0.0045 31.8 16.8 33 217-249 284-316 (546)
179 PF04129 Vps52: Vps52 / Sac2 f 67.3 1.8E+02 0.0038 31.3 14.6 47 117-163 38-84 (508)
180 cd07603 BAR_ACAPs The Bin/Amph 67.2 1.2E+02 0.0026 28.9 15.9 56 78-144 58-113 (200)
181 PF13166 AAA_13: AAA domain 67.0 1.9E+02 0.0041 31.3 18.8 17 121-137 322-338 (712)
182 KOG0933|consensus 67.0 1.4E+02 0.003 35.7 14.4 22 72-93 611-637 (1174)
183 PF05278 PEARLI-4: Arabidopsis 67.0 49 0.0011 33.5 9.8 38 213-250 204-241 (269)
184 TIGR02135 phoU_full phosphate 66.7 91 0.002 27.4 16.3 54 78-132 6-59 (212)
185 KOG0979|consensus 66.7 1.9E+02 0.004 34.5 15.3 33 217-249 756-788 (1072)
186 PF06295 DUF1043: Protein of u 66.5 31 0.00067 30.5 7.5 48 117-164 28-76 (128)
187 cd07630 BAR_SNX_like The Bin/A 66.3 1.2E+02 0.0027 28.8 16.2 54 93-165 2-55 (198)
188 PF03148 Tektin: Tektin family 66.3 1.7E+02 0.0036 30.3 16.3 68 73-141 225-292 (384)
189 cd07639 BAR_ACAP1 The Bin/Amph 66.2 1.3E+02 0.0028 29.0 14.2 59 180-239 59-121 (200)
190 KOG0976|consensus 66.0 2.8E+02 0.0061 32.8 19.1 69 71-139 135-208 (1265)
191 KOG0247|consensus 65.7 1.2E+02 0.0026 35.0 13.3 23 124-146 537-559 (809)
192 PF10167 NEP: Uncharacterised 65.6 38 0.00082 30.3 7.9 68 173-248 3-76 (118)
193 KOG3335|consensus 65.6 81 0.0017 30.5 10.5 136 119-262 7-145 (181)
194 KOG3598|consensus 65.6 1.9 4.1E-05 51.7 -0.2 18 38-55 1903-1920(2220)
195 KOG1733|consensus 65.5 71 0.0015 28.1 9.2 65 104-194 13-79 (97)
196 PRK11377 dihydroxyacetone kina 65.5 29 0.00064 37.1 8.5 37 177-225 344-380 (473)
197 KOG0933|consensus 65.4 3E+02 0.0066 33.0 19.7 166 78-249 702-876 (1174)
198 PLN03094 Substrate binding sub 65.0 1.2E+02 0.0026 31.8 12.6 29 67-95 213-245 (370)
199 TIGR01837 PHA_granule_1 poly(h 64.6 94 0.002 27.3 10.1 25 211-235 91-115 (118)
200 PLN02939 transferase, transfer 64.3 1.1E+02 0.0024 36.0 13.2 51 192-247 274-324 (977)
201 PF10168 Nup88: Nuclear pore c 63.9 2.6E+02 0.0056 31.7 17.8 18 126-143 559-576 (717)
202 KOG0687|consensus 63.8 34 0.00074 36.1 8.3 76 162-238 109-184 (393)
203 KOG1883|consensus 63.3 5.1 0.00011 47.3 2.6 24 311-334 1429-1452(1517)
204 PF03344 Daxx: Daxx Family; I 63.3 19 0.00042 40.5 6.9 64 69-145 58-129 (713)
205 PF12297 EVC2_like: Ellis van 63.3 2.2E+02 0.0049 30.8 17.5 66 85-156 203-272 (429)
206 PF07139 DUF1387: Protein of u 63.2 88 0.0019 32.2 11.0 40 120-159 159-199 (302)
207 TIGR02677 conserved hypothetic 63.0 1.2E+02 0.0026 32.9 12.4 68 173-240 140-215 (494)
208 TIGR00634 recN DNA repair prot 63.0 2.2E+02 0.0048 30.6 16.1 15 219-233 304-318 (563)
209 KOG4603|consensus 62.6 1.6E+02 0.0034 28.8 13.8 115 76-212 39-153 (201)
210 KOG3156|consensus 62.6 92 0.002 30.9 10.5 66 78-144 78-146 (220)
211 PF10174 Cast: RIM-binding pro 62.6 2.6E+02 0.0057 32.2 15.5 26 171-196 514-539 (775)
212 PF15003 HAUS2: HAUS augmin-li 62.5 1.9E+02 0.0041 29.6 13.6 19 233-251 184-202 (277)
213 KOG0243|consensus 62.5 97 0.0021 36.7 12.3 36 214-249 544-579 (1041)
214 COG3006 MukF Uncharacterized p 62.1 1.8E+02 0.004 30.6 13.0 43 145-194 247-291 (440)
215 TIGR03794 NHPM_micro_HlyD NHPM 62.1 1.9E+02 0.0041 29.5 16.6 82 61-143 80-168 (421)
216 PF07851 TMPIT: TMPIT-like pro 62.0 1.6E+02 0.0034 30.7 12.6 87 144-260 3-97 (330)
217 KOG4250|consensus 61.8 3E+02 0.0065 31.7 18.0 32 218-249 599-630 (732)
218 COG1579 Zn-ribbon protein, pos 61.8 1.8E+02 0.0038 29.1 14.8 131 112-251 15-145 (239)
219 PF10211 Ax_dynein_light: Axon 61.7 1.4E+02 0.0031 28.0 13.2 11 120-130 32-42 (189)
220 KOG4657|consensus 61.5 1.9E+02 0.004 29.2 13.7 41 122-162 66-106 (246)
221 cd07638 BAR_ACAP2 The Bin/Amph 61.5 1.6E+02 0.0034 28.4 18.5 57 78-145 58-114 (200)
222 KOG3647|consensus 61.2 1.4E+02 0.003 31.0 11.8 14 192-205 179-192 (338)
223 PF07544 Med9: RNA polymerase 61.1 13 0.00028 30.7 3.9 29 113-144 54-82 (83)
224 PF07989 Microtub_assoc: Micro 61.1 55 0.0012 27.0 7.5 47 192-238 19-72 (75)
225 PF09726 Macoilin: Transmembra 61.0 1.6E+02 0.0034 33.3 13.3 28 214-241 550-577 (697)
226 PF05565 Sipho_Gp157: Siphovir 60.9 1.3E+02 0.0029 27.4 11.9 35 215-249 53-87 (162)
227 COG0419 SbcC ATPase involved i 60.8 3E+02 0.0065 31.4 20.5 33 217-249 411-443 (908)
228 PF14257 DUF4349: Domain of un 60.5 30 0.00065 33.2 6.9 87 41-148 103-189 (262)
229 PF03999 MAP65_ASE1: Microtubu 60.2 12 0.00026 40.6 4.7 30 215-244 329-358 (619)
230 PF11757 RSS_P20: Suppressor o 59.9 85 0.0018 29.1 9.2 30 192-221 81-110 (137)
231 PF05615 THOC7: Tho complex su 59.8 1.2E+02 0.0025 26.7 9.9 93 45-145 18-121 (139)
232 PF03114 BAR: BAR domain; Int 59.7 1.2E+02 0.0027 26.6 17.3 35 217-251 122-156 (229)
233 COG0497 RecN ATPase involved i 59.5 2E+02 0.0043 32.0 13.5 68 122-194 298-365 (557)
234 KOG2150|consensus 59.0 68 0.0015 35.6 9.9 27 385-411 327-353 (575)
235 cd07651 F-BAR_PombeCdc15_like 58.9 1.2E+02 0.0026 28.7 10.5 15 185-199 192-206 (236)
236 COG1283 NptA Na+/phosphate sym 58.6 2.4E+02 0.0053 31.2 13.9 58 78-144 332-389 (533)
237 PF08663 HalX: HalX domain; I 58.6 69 0.0015 26.3 7.6 56 77-144 4-59 (71)
238 KOG2398|consensus 58.5 2.7E+02 0.0059 31.2 14.4 151 95-248 12-171 (611)
239 cd07597 BAR_SNX8 The Bin/Amphi 58.4 1.8E+02 0.004 28.2 14.5 59 107-165 15-73 (246)
240 PRK10780 periplasmic chaperone 58.0 1.2E+02 0.0027 27.4 10.0 39 65-107 24-62 (165)
241 PF06576 DUF1133: Protein of u 57.9 82 0.0018 30.3 9.1 122 117-249 44-166 (176)
242 PF06160 EzrA: Septation ring 57.8 2.8E+02 0.0061 30.1 19.2 88 74-164 64-155 (560)
243 KOG2346|consensus 57.7 1E+02 0.0022 34.3 10.8 126 74-204 444-594 (636)
244 PF04849 HAP1_N: HAP1 N-termin 57.7 2.4E+02 0.0051 29.2 16.7 70 89-163 186-255 (306)
245 PF05781 MRVI1: MRVI1 protein; 57.4 1.1E+02 0.0023 33.9 11.0 46 84-132 195-242 (538)
246 KOG0971|consensus 57.4 4.1E+02 0.0089 31.9 15.9 141 85-239 668-818 (1243)
247 cd07623 BAR_SNX1_2 The Bin/Amp 57.3 1.8E+02 0.0039 27.7 15.1 53 94-165 11-63 (224)
248 PF13863 DUF4200: Domain of un 56.8 1.2E+02 0.0026 25.6 15.2 41 214-254 79-119 (126)
249 KOG0244|consensus 56.5 88 0.0019 36.5 10.6 39 117-155 470-512 (913)
250 COG3096 MukB Uncharacterized p 56.2 3.6E+02 0.0078 32.0 14.9 38 214-251 388-425 (1480)
251 COG5124 Protein predicted to b 56.1 1.6E+02 0.0036 28.8 10.8 60 122-181 90-159 (209)
252 PF10158 LOH1CR12: Tumour supp 55.8 1.2E+02 0.0025 27.5 9.3 70 84-157 27-99 (131)
253 KOG4196|consensus 55.0 1.8E+02 0.0039 27.0 11.6 42 213-254 78-119 (135)
254 PF04568 IATP: Mitochondrial A 54.9 74 0.0016 27.8 7.7 32 185-227 52-83 (100)
255 smart00806 AIP3 Actin interact 54.7 2E+02 0.0043 31.1 12.2 34 120-156 154-187 (426)
256 PRK13729 conjugal transfer pil 54.6 1.3E+02 0.0027 32.9 10.9 37 215-251 82-118 (475)
257 KOG3915|consensus 54.2 1.4E+02 0.003 33.1 11.0 43 73-115 502-545 (641)
258 KOG1961|consensus 53.9 2.9E+02 0.0063 31.4 13.6 79 71-164 33-111 (683)
259 cd07664 BAR_SNX2 The Bin/Amphi 53.8 2.2E+02 0.0049 27.8 15.0 53 94-165 21-73 (234)
260 PF03915 AIP3: Actin interacti 53.8 59 0.0013 34.7 8.2 21 120-140 150-170 (424)
261 PF08614 ATG16: Autophagy prot 53.4 67 0.0014 29.8 7.7 41 121-161 116-156 (194)
262 KOG2004|consensus 53.4 4.4E+02 0.0094 31.0 15.3 39 213-251 317-366 (906)
263 PF03962 Mnd1: Mnd1 family; I 53.3 1.4E+02 0.0031 28.1 9.9 24 73-96 72-95 (188)
264 KOG2128|consensus 53.2 2.7E+02 0.0059 34.2 14.0 103 54-161 535-644 (1401)
265 cd07636 BAR_GRAF The Bin/Amphi 53.1 2.3E+02 0.0049 27.7 15.2 61 71-144 59-119 (207)
266 KOG0980|consensus 53.0 4.6E+02 0.0099 31.1 20.3 8 252-259 607-614 (980)
267 KOG0774|consensus 52.7 1.6E+02 0.0036 30.4 10.7 63 182-249 180-254 (334)
268 PF05833 FbpA: Fibronectin-bin 52.6 4.6 9.9E-05 41.2 -0.0 143 84-236 275-421 (455)
269 PRK10476 multidrug resistance 52.3 1.1E+02 0.0023 30.4 9.3 36 60-95 69-104 (346)
270 PRK13979 DNA topoisomerase IV 52.3 1.8E+02 0.0038 34.2 12.2 128 107-251 356-488 (957)
271 cd07652 F-BAR_Rgd1 The F-BAR ( 52.3 2.3E+02 0.0049 27.4 14.3 28 218-245 204-231 (234)
272 PF05483 SCP-1: Synaptonemal c 52.3 4.3E+02 0.0093 30.6 21.0 78 78-155 191-274 (786)
273 PF07888 CALCOCO1: Calcium bin 52.2 3.8E+02 0.0081 29.9 19.5 21 213-233 368-388 (546)
274 PF12795 MscS_porin: Mechanose 52.2 2.2E+02 0.0047 27.2 18.2 52 192-244 162-213 (240)
275 cd07606 BAR_SFC_plant The Bin/ 52.1 2.2E+02 0.0049 27.3 14.7 73 72-157 53-126 (202)
276 smart00434 TOP4c DNA Topoisome 52.0 77 0.0017 33.6 8.8 33 110-142 326-359 (445)
277 KOG1451|consensus 52.0 4.2E+02 0.0091 30.4 15.7 56 71-132 77-132 (812)
278 PF10186 Atg14: UV radiation r 52.0 2.1E+02 0.0046 26.9 13.9 22 230-251 195-216 (302)
279 cd00187 TOP4c DNA Topoisomeras 51.6 3.2E+02 0.0069 29.3 13.2 34 215-248 411-444 (445)
280 PF07544 Med9: RNA polymerase 51.3 78 0.0017 26.2 7.0 25 215-239 58-82 (83)
281 cd00176 SPEC Spectrin repeats, 51.3 1.6E+02 0.0034 25.2 20.8 42 118-160 83-124 (213)
282 PF07516 SecA_SW: SecA Wing an 51.3 2.1E+02 0.0046 26.7 11.8 43 83-130 7-50 (214)
283 TIGR02338 gimC_beta prefoldin, 51.1 1.6E+02 0.0034 25.2 11.3 35 110-144 6-40 (110)
284 PLN03184 chloroplast Hsp70; Pr 51.0 1E+02 0.0022 34.1 9.9 46 189-235 566-611 (673)
285 KOG0971|consensus 50.9 5.2E+02 0.011 31.1 17.8 55 197-251 383-438 (1243)
286 KOG4438|consensus 50.8 3.7E+02 0.0079 29.3 14.9 40 125-164 245-298 (446)
287 PRK10787 DNA-binding ATP-depen 50.7 1.1E+02 0.0024 34.7 10.2 33 217-249 312-344 (784)
288 cd07606 BAR_SFC_plant The Bin/ 50.5 2.4E+02 0.0052 27.1 14.8 110 119-235 6-119 (202)
289 KOG2815|consensus 50.4 2.9E+02 0.0062 28.1 12.3 35 215-251 211-245 (256)
290 KOG0368|consensus 50.4 1.9E+02 0.0041 36.3 12.1 107 74-205 1993-2103(2196)
291 PF11498 Activator_LAG-3: Tran 50.3 5.3 0.00011 42.1 0.0 37 107-144 62-99 (468)
292 PF14063 DUF4254: Protein of u 50.2 58 0.0013 29.9 6.6 102 62-164 22-135 (145)
293 KOG0161|consensus 50.1 6.6E+02 0.014 32.2 21.1 27 111-137 954-980 (1930)
294 smart00787 Spc7 Spc7 kinetocho 50.0 3E+02 0.0065 28.1 20.5 21 123-143 142-162 (312)
295 PF13094 CENP-Q: CENP-Q, a CEN 50.0 1.6E+02 0.0035 26.4 9.4 62 185-252 23-84 (160)
296 PF10018 Med4: Vitamin-D-recep 50.0 1.6E+02 0.0036 27.3 9.7 40 211-250 24-63 (188)
297 PRK10869 recombination and rep 50.0 3.7E+02 0.0081 29.2 19.1 28 135-162 208-235 (553)
298 TIGR01843 type_I_hlyD type I s 49.8 2.7E+02 0.0058 27.5 17.4 33 225-259 248-280 (423)
299 TIGR01000 bacteriocin_acc bact 49.8 3.2E+02 0.007 28.4 13.6 140 92-240 141-315 (457)
300 PRK14127 cell division protein 49.7 30 0.00065 30.6 4.6 26 120-145 43-68 (109)
301 KOG2148|consensus 49.7 3.2E+02 0.0069 31.6 13.2 16 83-98 648-663 (867)
302 PF14988 DUF4515: Domain of un 49.7 2.5E+02 0.0053 27.1 20.1 68 70-143 29-96 (206)
303 KOG1029|consensus 49.6 5.1E+02 0.011 30.7 15.4 13 127-139 386-398 (1118)
304 TIGR01062 parC_Gneg DNA topois 49.5 3.2E+02 0.0069 31.3 13.4 124 108-249 338-461 (735)
305 KOG2572|consensus 49.5 2.2E+02 0.0047 31.1 11.5 136 81-243 45-185 (498)
306 COG2433 Uncharacterized conser 49.4 4.5E+02 0.0097 30.0 15.2 31 213-243 478-508 (652)
307 PF03915 AIP3: Actin interacti 49.4 2.1E+02 0.0045 30.7 11.4 72 71-142 207-281 (424)
308 PRK11546 zraP zinc resistance 49.2 52 0.0011 30.4 6.2 41 102-142 42-82 (143)
309 TIGR00998 8a0101 efflux pump m 48.7 1.3E+02 0.0029 29.0 9.3 35 60-94 63-97 (334)
310 PF00038 Filament: Intermediat 48.7 2.6E+02 0.0057 27.1 17.7 58 193-250 188-250 (312)
311 PF05635 23S_rRNA_IVP: 23S rRN 48.7 1.2E+02 0.0027 25.3 7.9 21 139-159 1-21 (110)
312 PF14992 TMCO5: TMCO5 family 48.6 3.2E+02 0.0069 28.0 12.3 34 121-154 32-65 (280)
313 PF08385 DHC_N1: Dynein heavy 48.6 3.4E+02 0.0073 28.3 18.7 49 145-196 264-312 (579)
314 PLN03128 DNA topoisomerase 2; 48.4 1.8E+02 0.0038 34.9 11.6 38 213-250 1092-1131(1135)
315 cd07631 BAR_APPL1 The Bin/Amph 48.4 2.8E+02 0.0062 27.4 14.0 149 86-244 7-171 (215)
316 cd07602 BAR_RhoGAP_OPHN1-like 48.3 2.7E+02 0.0058 27.1 14.3 62 180-241 65-129 (207)
317 KOG2908|consensus 48.3 1.9E+02 0.0042 30.7 10.7 90 143-251 57-150 (380)
318 PF06637 PV-1: PV-1 protein (P 48.3 3.4E+02 0.0074 29.4 12.6 136 59-196 82-252 (442)
319 PF04912 Dynamitin: Dynamitin 48.3 1.8E+02 0.0039 29.9 10.5 39 213-251 326-364 (388)
320 COG5022 Myosin heavy chain [Cy 47.8 4.8E+02 0.01 32.4 15.0 26 72-97 837-862 (1463)
321 KOG0994|consensus 47.8 6.4E+02 0.014 31.3 17.0 33 217-249 1599-1631(1758)
322 KOG2295|consensus 47.6 4.7E+02 0.01 29.7 13.9 25 230-254 530-554 (648)
323 COG5104 PRP40 Splicing factor 47.5 4.3E+02 0.0094 29.3 14.7 34 192-225 446-481 (590)
324 PF06008 Laminin_I: Laminin Do 47.5 2.7E+02 0.0059 26.9 18.9 64 77-142 45-108 (264)
325 KOG2701|consensus 47.5 4.2E+02 0.009 30.0 13.5 119 118-238 313-451 (608)
326 PF09787 Golgin_A5: Golgin sub 47.4 3.9E+02 0.0084 28.7 14.9 26 79-104 167-192 (511)
327 PF03087 DUF241: Arabidopsis p 47.3 1.4E+02 0.0029 28.9 9.0 40 177-229 31-73 (231)
328 PRK13837 two-component VirA-li 47.1 2.8E+02 0.0061 30.9 12.4 49 115-163 87-135 (828)
329 PF12017 Tnp_P_element: Transp 47.1 57 0.0012 32.1 6.5 51 92-159 6-56 (236)
330 PF06698 DUF1192: Protein of u 47.0 49 0.0011 26.5 5.0 32 215-246 27-58 (59)
331 PF15254 CCDC14: Coiled-coil d 46.9 2.7E+02 0.0058 32.5 12.2 29 209-237 522-550 (861)
332 PF10458 Val_tRNA-synt_C: Valy 46.8 82 0.0018 24.7 6.2 31 112-142 2-33 (66)
333 PF14643 DUF4455: Domain of un 46.8 3.8E+02 0.0083 28.4 18.5 60 174-233 369-428 (473)
334 PF02403 Seryl_tRNA_N: Seryl-t 46.8 1.2E+02 0.0027 25.2 7.6 61 95-157 33-96 (108)
335 PF04799 Fzo_mitofusin: fzo-li 46.7 1E+02 0.0022 29.4 7.8 77 58-142 67-148 (171)
336 PF14644 DUF4456: Domain of un 46.3 2.6E+02 0.0057 26.4 15.2 88 67-160 15-117 (208)
337 PF12761 End3: Actin cytoskele 46.2 2.9E+02 0.0063 26.9 11.0 22 122-143 97-118 (195)
338 KOG1029|consensus 46.0 5.8E+02 0.013 30.3 17.0 11 397-407 743-753 (1118)
339 PF05557 MAD: Mitotic checkpoi 46.0 6.8 0.00015 43.0 0.0 42 208-249 280-331 (722)
340 COG3679 Regulatory protein inv 45.8 2.3E+02 0.005 25.6 9.5 66 95-161 24-100 (118)
341 PF11291 DUF3091: Protein of u 45.7 1.3E+02 0.0028 26.5 7.7 82 72-159 5-96 (100)
342 PF01496 V_ATPase_I: V-type AT 45.7 68 0.0015 35.6 7.5 34 215-248 235-272 (759)
343 TIGR01417 PTS_I_fam phosphoeno 45.6 2E+02 0.0043 31.5 10.8 37 177-225 100-136 (565)
344 PF08427 DUF1741: Domain of un 45.5 2.8E+02 0.0061 27.5 10.9 107 137-245 48-177 (237)
345 KOG4025|consensus 45.3 48 0.001 32.1 5.5 109 69-193 60-168 (207)
346 TIGR01834 PHA_synth_III_E poly 45.0 2.6E+02 0.0056 29.1 11.0 28 213-240 286-313 (320)
347 COG0466 Lon ATP-dependent Lon 45.0 4.6E+02 0.0099 30.5 13.6 62 176-251 210-278 (782)
348 COG2733 Predicted membrane pro 45.0 4.4E+02 0.0094 28.6 13.4 20 70-89 196-215 (415)
349 smart00502 BBC B-Box C-termina 44.9 1.7E+02 0.0036 23.7 10.4 50 84-144 35-84 (127)
350 PF02601 Exonuc_VII_L: Exonucl 44.8 3.1E+02 0.0068 26.9 14.5 14 234-247 258-271 (319)
351 PF09712 PHA_synth_III_E: Poly 44.7 3.4E+02 0.0075 27.3 14.0 90 145-235 187-291 (293)
352 KOG3478|consensus 44.7 2.5E+02 0.0054 25.6 10.4 43 215-257 75-117 (120)
353 cd07602 BAR_RhoGAP_OPHN1-like 44.6 3.1E+02 0.0067 26.7 15.9 61 71-144 59-119 (207)
354 PF05529 Bap31: B-cell recepto 44.4 1.5E+02 0.0033 27.2 8.5 17 118-134 158-174 (192)
355 KOG2376|consensus 44.4 4.8E+02 0.01 29.7 13.4 24 173-199 141-164 (652)
356 COG0466 Lon ATP-dependent Lon 44.4 96 0.0021 35.6 8.4 37 215-251 311-347 (782)
357 PF14735 HAUS4: HAUS augmin-li 44.3 3.3E+02 0.0071 27.0 17.6 45 200-244 160-206 (238)
358 PRK03598 putative efflux pump 44.2 88 0.0019 30.7 7.3 36 61-96 65-100 (331)
359 PF14193 DUF4315: Domain of un 44.1 39 0.00085 28.6 4.2 27 225-251 3-29 (83)
360 TIGR01541 tape_meas_lam_C phag 44.0 3.8E+02 0.0082 27.6 18.0 32 210-241 113-144 (332)
361 PF09731 Mitofilin: Mitochondr 44.0 4.3E+02 0.0094 28.3 18.6 21 73-93 247-267 (582)
362 KOG2991|consensus 44.0 3.9E+02 0.0085 27.7 15.6 28 129-156 126-154 (330)
363 KOG0104|consensus 43.7 5.4E+02 0.012 30.3 13.9 31 218-248 814-844 (902)
364 TIGR01062 parC_Gneg DNA topois 43.7 39 0.00085 38.2 5.4 46 97-142 398-452 (735)
365 TIGR03545 conserved hypothetic 43.7 4.3E+02 0.0094 29.2 13.0 21 122-142 165-185 (555)
366 PF09321 DUF1978: Domain of un 43.6 3.6E+02 0.0078 27.2 13.8 43 122-164 92-135 (241)
367 COG1730 GIM5 Predicted prefold 43.5 78 0.0017 29.2 6.4 39 106-144 5-43 (145)
368 KOG3595|consensus 43.5 2.6E+02 0.0057 33.9 12.2 87 67-157 871-963 (1395)
369 PHA03247 large tegument protei 43.4 3.4E+02 0.0073 35.9 13.2 26 179-204 954-979 (3151)
370 PF10112 Halogen_Hydrol: 5-bro 43.3 2.7E+02 0.0059 25.7 14.5 30 209-239 154-183 (199)
371 PF04108 APG17: Autophagy prot 43.3 4.1E+02 0.0089 27.8 21.4 62 75-143 141-221 (412)
372 PF02252 PA28_beta: Proteasome 43.0 1.4E+02 0.0031 27.5 8.0 80 61-144 43-138 (150)
373 PF05911 DUF869: Plant protein 42.7 5.9E+02 0.013 29.5 18.1 24 231-254 734-757 (769)
374 KOG4593|consensus 42.5 5.9E+02 0.013 29.4 18.6 35 214-248 280-324 (716)
375 PF15216 TSLP: Thymic stromal 42.5 1.1E+02 0.0023 28.1 6.9 71 44-118 19-92 (124)
376 PRK13411 molecular chaperone D 42.3 2.2E+02 0.0048 31.4 10.6 64 186-250 526-596 (653)
377 PF15456 Uds1: Up-regulated Du 42.2 2.6E+02 0.0056 25.1 10.3 36 122-157 23-58 (124)
378 PRK02224 chromosome segregatio 42.2 5.4E+02 0.012 28.8 21.4 15 72-86 323-337 (880)
379 PF08367 M16C_assoc: Peptidase 42.1 25 0.00054 33.5 3.1 45 120-165 16-61 (248)
380 PRK03947 prefoldin subunit alp 41.8 42 0.00092 29.3 4.3 33 112-144 11-43 (140)
381 PRK01294 lipase chaperone; Pro 41.8 4.1E+02 0.0089 27.4 13.2 84 41-142 88-173 (336)
382 PF03962 Mnd1: Mnd1 family; I 41.4 2.8E+02 0.0062 26.1 9.9 8 192-199 153-160 (188)
383 PRK07353 F0F1 ATP synthase sub 41.4 2.3E+02 0.0051 24.4 9.3 70 179-249 7-76 (140)
384 COG5141 PHD zinc finger-contai 41.4 1E+02 0.0022 34.2 7.8 151 41-201 436-596 (669)
385 KOG1103|consensus 41.3 5E+02 0.011 28.2 14.5 44 217-260 253-298 (561)
386 PF14576 SEO_N: Sieve element 41.2 3E+02 0.0065 28.2 10.6 72 173-250 203-282 (286)
387 COG1269 NtpI Archaeal/vacuolar 41.1 5.5E+02 0.012 28.7 13.6 25 225-249 249-273 (660)
388 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.0 2.5E+02 0.0054 24.7 15.4 26 120-145 2-27 (132)
389 CHL00043 cemA envelope membran 40.8 1.4E+02 0.0031 30.1 8.2 37 123-159 113-151 (261)
390 cd07636 BAR_GRAF The Bin/Amphi 40.8 3.6E+02 0.0077 26.4 13.6 115 122-240 3-128 (207)
391 PRK11677 hypothetical protein; 40.7 1.2E+02 0.0027 27.6 7.2 44 120-163 35-79 (134)
392 KOG1265|consensus 40.7 4.3E+02 0.0094 31.7 12.7 72 71-144 1027-1101(1189)
393 KOG1162|consensus 40.7 3.9E+02 0.0084 30.2 12.2 42 126-167 122-164 (617)
394 PHA02562 46 endonuclease subun 40.5 4.5E+02 0.0098 27.5 20.3 81 74-155 178-261 (562)
395 PF05701 WEMBL: Weak chloropla 40.5 5E+02 0.011 28.0 19.6 35 122-160 226-260 (522)
396 TIGR00414 serS seryl-tRNA synt 40.4 94 0.002 32.5 7.2 31 95-127 34-64 (418)
397 COG2433 Uncharacterized conser 40.2 1.9E+02 0.0041 32.8 9.7 36 215-250 473-508 (652)
398 KOG3677|consensus 40.2 1.8E+02 0.0039 31.9 9.2 163 80-251 289-473 (525)
399 KOG3648|consensus 39.9 47 0.001 38.0 5.1 6 282-287 52-57 (1179)
400 PF04799 Fzo_mitofusin: fzo-li 39.9 99 0.0022 29.5 6.6 38 214-251 125-162 (171)
401 KOG0244|consensus 39.9 6.7E+02 0.015 29.8 14.1 80 46-134 271-350 (913)
402 PF10167 NEP: Uncharacterised 39.8 2.5E+02 0.0054 25.2 8.8 56 73-142 4-65 (118)
403 KOG0978|consensus 39.7 6.4E+02 0.014 29.0 20.3 36 215-250 537-572 (698)
404 PF10018 Med4: Vitamin-D-recep 39.6 1.7E+02 0.0038 27.2 8.2 31 116-146 24-54 (188)
405 KOG1899|consensus 39.3 2.6E+02 0.0056 32.2 10.5 40 122-161 147-186 (861)
406 PF01540 Lipoprotein_7: Adhesi 39.3 4.7E+02 0.01 27.3 15.9 24 176-199 282-305 (353)
407 PRK11177 phosphoenolpyruvate-p 39.1 2.8E+02 0.0062 30.5 10.8 37 177-225 101-137 (575)
408 KOG0978|consensus 39.1 6.6E+02 0.014 28.9 18.8 124 116-250 498-621 (698)
409 TIGR00570 cdk7 CDK-activating 38.8 3.5E+02 0.0075 28.1 10.7 25 139-163 87-111 (309)
410 PF06419 COG6: Conserved oligo 38.8 4.9E+02 0.011 28.8 12.5 147 78-249 49-214 (618)
411 KOG1853|consensus 38.7 4.7E+02 0.01 27.1 15.7 34 217-250 148-181 (333)
412 KOG4677|consensus 38.6 5.9E+02 0.013 28.3 14.6 38 214-251 335-376 (554)
413 PF10376 Mei5: Double-strand r 38.5 64 0.0014 31.5 5.3 96 40-139 41-156 (221)
414 KOG4302|consensus 38.5 6.5E+02 0.014 28.7 17.2 25 73-97 113-137 (660)
415 cd07601 BAR_APPL The Bin/Amphi 38.4 3.9E+02 0.0084 26.1 21.8 87 45-157 42-128 (215)
416 KOG0717|consensus 38.2 5.6E+02 0.012 28.4 12.5 61 74-142 182-250 (508)
417 PF05622 HOOK: HOOK protein; 38.1 11 0.00023 41.5 0.0 51 114-164 239-289 (713)
418 PF06409 NPIP: Nuclear pore co 38.0 4.5E+02 0.0099 26.8 11.2 42 169-212 150-191 (265)
419 KOG2391|consensus 38.0 2.8E+02 0.006 29.5 9.9 42 210-251 240-285 (365)
420 KOG3543|consensus 37.9 3.2E+02 0.0069 31.7 11.0 106 40-161 735-845 (1218)
421 PF13815 Dzip-like_N: Iguana/D 37.9 2.7E+02 0.0058 24.1 10.2 63 179-250 52-114 (118)
422 PF07445 priB_priC: Primosomal 37.8 2E+02 0.0043 26.8 8.2 33 215-247 101-133 (173)
423 KOG0245|consensus 37.5 47 0.001 39.4 4.8 49 46-95 302-350 (1221)
424 KOG2216|consensus 37.4 61 0.0013 33.4 5.1 51 117-167 150-202 (303)
425 KOG1265|consensus 37.3 8.2E+02 0.018 29.5 18.3 15 182-196 1128-1142(1189)
426 KOG4677|consensus 37.3 6.2E+02 0.013 28.1 14.1 24 124-147 182-205 (554)
427 PRK09562 mazG nucleoside triph 37.2 2.6E+02 0.0057 27.8 9.4 48 177-229 213-260 (262)
428 PF14629 ORC4_C: Origin recogn 37.1 2.4E+02 0.0053 25.8 8.6 52 106-161 18-69 (203)
429 COG0419 SbcC ATPase involved i 37.0 6.9E+02 0.015 28.6 19.5 13 193-205 604-616 (908)
430 PF01213 CAP_N: Adenylate cycl 37.0 1.5E+02 0.0032 30.4 7.9 19 233-251 179-197 (312)
431 KOG4673|consensus 37.0 7.5E+02 0.016 29.0 19.8 28 67-94 336-363 (961)
432 TIGR02680 conserved hypothetic 36.9 8.5E+02 0.018 29.6 19.8 159 73-241 233-393 (1353)
433 PF06248 Zw10: Centromere/kine 36.9 5.8E+02 0.012 27.6 12.9 19 68-86 5-23 (593)
434 PRK05658 RNA polymerase sigma 36.8 6.1E+02 0.013 27.9 17.3 38 122-159 262-299 (619)
435 cd07637 BAR_ACAP3 The Bin/Amph 36.8 3.9E+02 0.0084 25.6 18.5 64 79-155 59-122 (200)
436 PF08424 NRDE-2: NRDE-2, neces 36.6 1.4E+02 0.003 29.7 7.5 34 127-161 2-35 (321)
437 PF05911 DUF869: Plant protein 36.6 7.3E+02 0.016 28.8 15.8 24 213-236 131-154 (769)
438 COG0188 GyrA Type IIA topoisom 36.5 5.1E+02 0.011 30.2 12.6 155 82-250 314-475 (804)
439 smart00549 TAFH TAF homology. 36.4 1.2E+02 0.0025 26.6 6.0 61 173-233 21-84 (92)
440 TIGR00763 lon ATP-dependent pr 36.3 6.4E+02 0.014 28.5 13.2 152 71-259 118-283 (775)
441 PF15573 Imm27: Immunity prote 36.2 1.6E+02 0.0036 29.7 7.7 34 193-230 168-201 (259)
442 cd07635 BAR_GRAF2 The Bin/Amph 36.2 4.2E+02 0.0091 25.9 14.9 115 122-239 3-127 (207)
443 PF15070 GOLGA2L5: Putative go 36.1 6.7E+02 0.015 28.2 17.2 32 132-163 119-150 (617)
444 PF03999 MAP65_ASE1: Microtubu 36.0 12 0.00026 40.6 0.0 39 213-251 232-278 (619)
445 KOG4721|consensus 36.0 83 0.0018 35.9 6.2 40 122-161 411-451 (904)
446 PF14728 PHTB1_C: PTHB1 C-term 36.0 5E+02 0.011 27.3 11.6 30 73-104 210-239 (377)
447 PF14817 HAUS5: HAUS augmin-li 35.7 3.8E+02 0.0083 30.2 11.2 84 73-163 321-417 (632)
448 PRK07739 flgK flagellar hook-a 35.7 1.7E+02 0.0037 31.3 8.3 84 39-134 115-198 (507)
449 PF15053 Njmu-R1: Mjmu-R1-like 35.7 44 0.00096 35.0 3.9 55 137-191 157-212 (353)
450 smart00806 AIP3 Actin interact 35.3 5.5E+02 0.012 27.9 11.8 70 69-142 209-278 (426)
451 COG3599 DivIVA Cell division i 35.2 4.4E+02 0.0095 25.8 14.6 33 215-247 122-160 (212)
452 KOG1684|consensus 35.2 31 0.00067 36.6 2.8 26 79-105 244-269 (401)
453 PRK15136 multidrug efflux syst 35.1 2.3E+02 0.0049 29.1 8.9 85 61-154 83-167 (390)
454 KOG3758|consensus 35.1 4.4E+02 0.0095 30.1 11.4 41 124-164 52-100 (655)
455 PF09763 Sec3_C: Exocyst compl 35.1 6.6E+02 0.014 27.8 15.5 41 71-111 27-67 (701)
456 PF07352 Phage_Mu_Gam: Bacteri 35.0 1E+02 0.0022 27.6 5.7 32 117-148 6-37 (149)
457 KOG4643|consensus 35.0 9.1E+02 0.02 29.4 20.3 94 71-182 169-268 (1195)
458 PF08393 DHC_N2: Dynein heavy 35.0 1.5E+02 0.0033 29.7 7.5 169 70-241 126-309 (408)
459 KOG2010|consensus 34.9 1.6E+02 0.0036 31.2 7.8 31 109-139 135-165 (405)
460 TIGR01837 PHA_granule_1 poly(h 34.9 1.3E+02 0.0028 26.4 6.2 29 111-139 85-114 (118)
461 PF10212 TTKRSYEDQ: Predicted 34.9 6.3E+02 0.014 28.1 12.4 94 129-248 406-501 (518)
462 PF05008 V-SNARE: Vesicle tran 34.9 2.2E+02 0.0049 22.3 8.4 57 71-138 22-78 (79)
463 PF07445 priB_priC: Primosomal 34.9 3.8E+02 0.0083 25.0 16.1 62 180-241 107-170 (173)
464 PF14915 CCDC144C: CCDC144C pr 34.8 5.5E+02 0.012 26.8 15.9 43 97-142 42-84 (305)
465 PLN02678 seryl-tRNA synthetase 34.8 1.3E+02 0.0029 32.1 7.4 30 96-127 38-67 (448)
466 KOG0579|consensus 34.5 8.4E+02 0.018 28.9 18.8 57 74-134 871-927 (1187)
467 cd07662 BAR_SNX6 The Bin/Amphi 34.4 4.7E+02 0.01 25.9 14.5 55 91-164 19-73 (218)
468 PF13815 Dzip-like_N: Iguana/D 34.3 1.7E+02 0.0036 25.4 6.7 28 71-98 45-72 (118)
469 KOG3091|consensus 34.2 5.3E+02 0.012 28.6 11.7 60 172-235 370-430 (508)
470 PF05278 PEARLI-4: Arabidopsis 34.2 3.9E+02 0.0084 27.3 10.1 79 75-156 164-242 (269)
471 PF05149 Flagellar_rod: Parafl 34.0 5.4E+02 0.012 26.5 17.0 62 190-251 192-254 (289)
472 KOG0239|consensus 34.0 7.5E+02 0.016 28.1 13.7 13 392-404 419-431 (670)
473 PF13339 AATF-Che1: Apoptosis 34.0 3.1E+02 0.0068 23.7 8.7 27 216-242 101-128 (131)
474 KOG2685|consensus 33.8 6.5E+02 0.014 27.4 20.1 68 173-246 223-290 (421)
475 TIGR00444 mazG MazG family pro 33.7 3.9E+02 0.0085 26.5 9.9 43 177-224 204-246 (248)
476 PRK13411 molecular chaperone D 33.6 1.9E+02 0.0042 31.8 8.6 15 124-138 558-572 (653)
477 cd07627 BAR_Vps5p The Bin/Amph 33.4 4.2E+02 0.0091 25.0 15.8 145 94-251 3-157 (216)
478 PHA02592 52 DNA topisomerase I 33.2 2.7E+02 0.0059 29.9 9.3 33 116-148 397-431 (439)
479 PF04912 Dynamitin: Dynamitin 33.2 5.6E+02 0.012 26.4 14.1 31 131-161 291-321 (388)
480 PF10498 IFT57: Intra-flagella 33.1 5.9E+02 0.013 26.6 12.7 17 122-138 192-208 (359)
481 PRK01203 prefoldin subunit alp 33.0 1.9E+02 0.0042 26.4 7.1 33 110-142 3-35 (130)
482 COG1293 Predicted RNA-binding 33.0 3.3E+02 0.0071 29.9 10.1 37 92-134 270-306 (564)
483 KOG0241|consensus 32.9 2.1E+02 0.0046 34.5 8.9 80 46-134 305-384 (1714)
484 KOG4074|consensus 32.9 6.2E+02 0.014 26.8 13.8 38 125-162 137-183 (383)
485 PRK13922 rod shape-determining 32.8 4.4E+02 0.0096 25.4 10.0 25 73-97 37-61 (276)
486 KOG1696|consensus 32.7 4.2E+02 0.0092 25.8 9.6 136 97-237 5-161 (193)
487 PF04177 TAP42: TAP42-like fam 32.6 2.6E+02 0.0056 28.2 8.7 44 43-94 4-47 (340)
488 KOG2160|consensus 32.6 5E+02 0.011 27.4 10.8 53 92-156 162-220 (342)
489 KOG1168|consensus 32.5 13 0.00027 38.6 -0.5 120 91-232 217-353 (385)
490 PF05103 DivIVA: DivIVA protei 32.4 44 0.00095 28.3 2.8 39 120-158 31-69 (131)
491 KOG1318|consensus 32.4 2.7E+02 0.0058 30.0 9.0 27 121-147 222-251 (411)
492 PF10408 Ufd2P_core: Ubiquitin 32.4 2.1E+02 0.0046 31.2 8.6 39 92-132 174-212 (629)
493 PF02050 FliJ: Flagellar FliJ 32.4 2.5E+02 0.0055 22.2 14.3 29 126-154 3-31 (123)
494 KOG2063|consensus 32.3 2.5E+02 0.0055 32.8 9.4 188 42-247 517-719 (877)
495 PRK13386 fliH flagellar assemb 32.2 4.1E+02 0.0089 25.8 9.7 86 72-178 88-176 (236)
496 PRK14150 heat shock protein Gr 32.2 4.5E+02 0.0099 25.1 12.0 103 114-235 34-136 (193)
497 COG5665 NOT5 CCR4-NOT transcri 32.2 1.6E+02 0.0035 31.9 7.4 83 136-228 3-90 (548)
498 TIGR00763 lon ATP-dependent pr 32.2 7.8E+02 0.017 27.8 13.7 149 67-245 182-338 (775)
499 PRK05560 DNA gyrase subunit A; 32.1 79 0.0017 35.9 5.5 62 97-158 404-474 (805)
500 TIGR02492 flgK_ends flagellar 32.0 2.6E+02 0.0057 27.9 8.6 111 36-158 100-211 (322)
No 1
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=99.94 E-value=6.9e-27 Score=199.59 Aligned_cols=78 Identities=56% Similarity=0.914 Sum_probs=75.8
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHh
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 153 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsd 153 (415)
|||++||++|+||||+|||||+||||||++||++|||++||| |+.+||.|++||++||+|||+||+.|++++++
T Consensus 1 eirt~vEq~~~~FlD~aRq~e~~FlqKr~~LS~~kpe~~lkE------Ei~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d 74 (106)
T PF11594_consen 1 EIRTYVEQLIQSFLDVARQMEAFFLQKRFELSAYKPEQVLKE------EINELKEELQRKEQLLQKHYEKIDYWEKLLSD 74 (106)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999 99999999999999999999999999999988
Q ss_pred HHHH
Q psy10214 154 LQSC 157 (415)
Q Consensus 154 fQsc 157 (415)
+++.
T Consensus 75 ~~~~ 78 (106)
T PF11594_consen 75 AQNQ 78 (106)
T ss_pred HHhh
Confidence 8764
No 2
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=99.90 E-value=2.3e-23 Score=178.00 Aligned_cols=86 Identities=53% Similarity=0.849 Sum_probs=83.3
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy10214 175 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254 (415)
Q Consensus 175 EIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~ 254 (415)
|+++.||+++++|||+||++|+|||+|++.+|++||+.++|+||++||.|++||++|++||++||++|+++|+|++++++
T Consensus 1 eirt~vEq~~~~FlD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~k 80 (106)
T PF11594_consen 1 EIRTYVEQLIQSFLDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQHK 80 (106)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10214 255 SPAHQG 260 (415)
Q Consensus 255 spaq~~ 260 (415)
.|++.+
T Consensus 81 ~~~evp 86 (106)
T PF11594_consen 81 VPDEVP 86 (106)
T ss_pred Cchhcc
Confidence 888864
No 3
>KOG1924|consensus
Probab=97.83 E-value=0.0031 Score=70.10 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10214 232 IKRHYDKIAVWQNLLSDLQGWAKSPAHQGSTSSASGTTPPNSTPTQ 277 (415)
Q Consensus 232 IqKh~eKIeeWQsvL~dlq~~~~spaq~~~~~~~~~~~~p~~~~~~ 277 (415)
++||-+||..-+.... .++||++-+|- ..++|+|.++|+.
T Consensus 497 l~k~e~Ki~~l~ae~~----al~s~~~~~~~--~~~iP~PP~~pp~ 536 (1102)
T KOG1924|consen 497 LQKHEEKIKLLEAEKQ----ALSSPSQLLPI--DGGIPPPPPLPPT 536 (1102)
T ss_pred HHHhhhhcccCchhhh----hccCcccCCCC--CCCCCCCCCCCCC
Confidence 4444455544433332 46677775443 3455556566553
No 4
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=97.02 E-value=0.0082 Score=54.91 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 192 RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~ 247 (415)
..+...|+|.+++++.++|+++...-|..|+.++++|.+.+++..+.++..+++|+
T Consensus 107 ~~i~~L~~NmhhllNeyRPhQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~le 162 (162)
T PF05983_consen 107 EDIRLLFINMHHLLNEYRPHQARETLIMMMEEQLEEKREEIEEIRKVCEKAREVLE 162 (162)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999999999999999999999999999988874
No 5
>KOG0570|consensus
Probab=96.34 E-value=0.056 Score=52.25 Aligned_cols=59 Identities=10% Similarity=0.300 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 193 QMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 193 QLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.+...|++.+|+++.++|+++..+-|--++.+|+++...++..+..+++-..+|+|...
T Consensus 110 di~tifvnlHHLiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~l~d~~~ 168 (223)
T KOG0570|consen 110 DIRTIFVNLHHLINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHLRQVREVLDDQFQ 168 (223)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999987744
No 6
>KOG2675|consensus
Probab=96.09 E-value=0.18 Score=53.43 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh---hh
Q psy10214 78 EIDQATLKFLDLARQM------------EAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH---YD 142 (415)
Q Consensus 78 ~veq~~~kFid~Arq~------------E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh---y~ 142 (415)
-+...+.+|+++++.+ ++||++|-|+.++.+-..= +..++..=|..-++.|.+. .+
T Consensus 56 ~i~~~l~~~~~lS~kIggdv~~~~~~v~~~F~s~R~~L~~A~q~qKP---------ds~elad~LkPI~e~i~eI~~fkE 126 (480)
T KOG2675|consen 56 LISEPLAEYLKLSKKIGGDVADVAEMVKSAFASQRAFLWVASQKQKP---------DSNELADLLKPINEEIGEINNFKE 126 (480)
T ss_pred HHHhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhccCC---------ChHHHHHHhhhHHHhhhHHhhhhh
Confidence 3667788888887754 6899998888776543211 3333443344444333332 22
Q ss_pred ---HHHHHHHhHHhHHHHhhhh--hcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHH
Q psy10214 143 ---KIAVWQNLLSDLQSCLQVL--TKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKED 217 (415)
Q Consensus 143 ---KIavWqnLlsdfQscLs~L--SkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEE 217 (415)
+...| |-|+++-.-+..| ++.+ .+=--|++.++++-.|+.++.+ |
T Consensus 127 ~nRkS~~F-NhLsav~e~i~algWVav~----------------~tP~p~vke~~daa~FY~NrvL-----------k-- 176 (480)
T KOG2675|consen 127 KNRKSPFF-NHLSAVSESIPALGWVAVK----------------PTPAPYVKEFKDAAQFYTNRVL-----------K-- 176 (480)
T ss_pred cccCchHH-HHHHHHHhhcccceeEecC----------------CCCchHHHHHHHHHHHHHHHHH-----------H--
Confidence 34455 4444444444444 2211 2223455666777778888753 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 218 IVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 218 I~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
++|..-.+.=+|.+.+++-..+-++-+++-
T Consensus 177 --Eyk~~D~~hveWvKa~l~l~~eL~~YVk~h 206 (480)
T KOG2675|consen 177 --EYKEKDPRHVEWVKAYLALFLELQAYVKEH 206 (480)
T ss_pred --HhccCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666665555544444444
No 7
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=94.83 E-value=0.054 Score=44.94 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=54.9
Q ss_pred HHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q psy10214 148 QNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLAR 227 (415)
Q Consensus 148 qnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqR 227 (415)
.+|++++...|..++.+..++.. ..+|++..|...+ .....+..-++ .+..++.|.++-+.+||..|+.||+.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~-~~~e~e~ki~~Qi----~Em~~ir~~v~--eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKH-QKDEYEHKINSQI----QEMQQIRQKVY--ELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999888776655344 5677766665555 55555666666 44566677788889999999999988
Q ss_pred HHH
Q psy10214 228 KEE 230 (415)
Q Consensus 228 KEr 230 (415)
++.
T Consensus 76 r~~ 78 (79)
T PF08581_consen 76 RGR 78 (79)
T ss_dssp HTT
T ss_pred hCC
Confidence 753
No 8
>KOG4368|consensus
Probab=94.50 E-value=5.5 Score=44.19 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=16.1
Q ss_pred hhhHhHhHHHHHHHHHHHHH-HHHHH
Q psy10214 72 KDEIKLEIDQATLKFLDLAR-QMEAF 96 (415)
Q Consensus 72 k~E~~~~veq~~~kFid~Ar-q~E~f 96 (415)
+.-|++.|++-|+|.|+-.. -||.|
T Consensus 81 ~~a~~~~~~~~~~k~l~~~~l~~~~~ 106 (757)
T KOG4368|consen 81 TAAVAHAVEQQMQKLLEETQLDMNEF 106 (757)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 34567777888888876543 25555
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.29 E-value=5.1 Score=41.49 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
++++.++++++...++.|++-.+.+...+.-++.++..+..+
T Consensus 240 ~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 240 TDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333444444445555555555555554444
No 10
>PRK11637 AmiB activator; Provisional
Probab=94.15 E-value=7.8 Score=39.76 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=29.8
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhH
Q psy10214 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDK 143 (415)
Q Consensus 72 k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~K 143 (415)
.++++..+++.-.+.-++-+++..-.-+ +.-...+-+.+-++.|....+|.++..++.++++.|.+.-.+
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~--l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQ--LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566655555555444444432221 211112223333334444444444444444444444444333
No 11
>KOG3866|consensus
Probab=94.07 E-value=2.3 Score=44.17 Aligned_cols=124 Identities=20% Similarity=0.314 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHhhh------------HHHHHH------------------------------HhHHhHHHHhhhh-
Q psy10214 125 DLRHDLARKEELIKRHYD------------KIAVWQ------------------------------NLLSDLQSCLQVL- 161 (415)
Q Consensus 125 eLR~ElaRKnaLLrkhy~------------KIavWq------------------------------nLlsdfQscLs~L- 161 (415)
++|.+.++-++-++||.+ --+||. +|++-|+-.|.-.
T Consensus 199 ~Rkeaesk~EE~~krH~~HpKvnhPGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvY 278 (442)
T KOG3866|consen 199 ERKEAESKHEESLKRHNDHPKVNHPGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVY 278 (442)
T ss_pred HHHHHHHHHHHHHHhhccCccCCCCCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhc
Confidence 555556666788888887 357887 4555555555432
Q ss_pred -hcccccccccchhhHhHhHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCc---------hh-hhHHHHHHHHHHHH
Q psy10214 162 -TKEDEVSTTLEKDEIKLEIDQATLKFLDLAR----QMEAFFLQKRFLLSALKP---------EL-IVKEDIVDLRHDLA 226 (415)
Q Consensus 162 -SkqE~ser~~DqdEIKv~VEq~tnRFLD~AR----QLE~FFLQKrlllSa~KP---------e~-vvKEEI~dLK~ELq 226 (415)
.++++. .|.+-+|-...|.-+|++=+|..+ .||.|.- .--.-...-| +. .+.+|+..+++|++
T Consensus 279 dpkNeeD-DM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~-~t~~kef~~p~e~WEtl~q~~~yTeEEL~~fE~e~A 356 (442)
T KOG3866|consen 279 DPKNEED-DMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLN-DTDNKEFNPPKEEWETLGQKKVYTEEELQQFEREYA 356 (442)
T ss_pred CCCCcch-HHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHh-hhhhcccCCcchhhhhhcccccccHHHHHHHHHHHH
Confidence 333332 344555555666667777666553 4555443 1111111112 22 45889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 227 RKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 227 RKErLIqKh~eKIeeWQsvL~dlq 250 (415)
.|++-+.+--+.+..=...|+..+
T Consensus 357 ~ke~El~~ka~~lqq~~ealqr~h 380 (442)
T KOG3866|consen 357 QKEQELQHKAEALQQPPEALQRVH 380 (442)
T ss_pred HHHHHHhchHHHhhCCHHHHHHHH
Confidence 999888776666655555554444
No 12
>KOG1924|consensus
Probab=93.47 E-value=2.4 Score=48.38 Aligned_cols=37 Identities=38% Similarity=0.752 Sum_probs=21.2
Q ss_pred CCCCCCCCCC-CCCCCCccCCCCCCCCCCCCCCCCCCC
Q psy10214 266 SGTTPPNSTP-TQSGPGISAMGGPLPGMMGGMAPIVPG 302 (415)
Q Consensus 266 ~~~~~p~~~~-~~~~~~~~~~~g~~~~~~~~map~qq~ 302 (415)
.++|||.+.| -.+|.+..--++|+||++||-+||.+.
T Consensus 539 ~g~pppPppPPlpggag~PPPPpplPg~aG~PPpPppp 576 (1102)
T KOG1924|consen 539 TGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPP 576 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCccCCC
Confidence 3444444443 234455556667788888776665544
No 13
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=93.28 E-value=4.8 Score=34.48 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLSALK 108 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls~~k 108 (415)
..+|.+.++.+++|+-...-.|....
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~ 27 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTD 27 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcc
Confidence 35788888888888887766665443
No 14
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=93.25 E-value=2.8 Score=41.79 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHhhcChhHHHHhhhhch----hHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy10214 81 QATLKFLDLARQMEA------FFLQKRFLLSALKPELIVKEVNMVT----KDIVDLRHDLARKEELIKRHYDKIAVWQNL 150 (415)
Q Consensus 81 q~~~kFid~Arq~E~------fFLqkr~~ls~~kpe~i~ke~n~~~----~di~eLR~ElaRKnaLLrkhy~KIavWqnL 150 (415)
+.|.+||..|.++|. ||.+.-++...++-..-.+|...|. +++++.|+++...++++.+.-.+..|.+=-
T Consensus 1 k~i~~~l~~a~e~~~~~p~v~Y~c~~ya~~~~l~~~~~~~e~~~~~~~Ll~~lE~~K~~~~~~~~~~~~~~~~~~v~~fa 80 (380)
T PF04652_consen 1 KSISPFLKRAQELEKRDPVVAYYCRLYAVEQILKLKLRSKECRQFLTSLLDKLEKMKAELGDNEAILDDVAAQAYVENFA 80 (380)
T ss_dssp --HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHTT-TT--HHHHHHHHHHHHHHHHHHHCT---CHHC-HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhcCCEEhHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhhhccCcHHhhcCHHHHHHHHHHHH
Confidence 357899999999994 5655544444444333333322222 244445555554445554444455555544
Q ss_pred HHhHHHHhhhhhc
Q psy10214 151 LSDLQSCLQVLTK 163 (415)
Q Consensus 151 lsdfQscLs~LSk 163 (415)
+.-|..|...+.+
T Consensus 81 ~~~f~~a~~~~~~ 93 (380)
T PF04652_consen 81 LKLFNRADKEDRA 93 (380)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHc
Confidence 7777777777644
No 15
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.18 E-value=6.4 Score=35.62 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~d 248 (415)
++++.+++.++.+.........+++.+-+.+++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 157 REEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666655566666666666655543
No 16
>KOG4674|consensus
Probab=92.90 E-value=1.5 Score=53.28 Aligned_cols=118 Identities=27% Similarity=0.276 Sum_probs=81.6
Q ss_pred HHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHH-
Q psy10214 113 VKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLA- 191 (415)
Q Consensus 113 ~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~A- 191 (415)
+.+.|.+++...-||+|..+....|++-+++|+....=+.-||+.+..|.+.-.. -..+-.-++..+++...||=|..
T Consensus 1221 v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~-~~ael~~l~~e~~~wK~R~q~L~~ 1299 (1822)
T KOG4674|consen 1221 VEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQE-KVAELKKLEEENDRWKQRNQDLLE 1299 (1822)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888899999999999999999998888877777788777776443111 11122233444455554554433
Q ss_pred --HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 192 --RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQ 243 (415)
Q Consensus 192 --RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQ 243 (415)
+..+--||.+ ++.+|..|+.||..|+++|+.+..++.+-+
T Consensus 1300 k~k~~d~~~~~k------------L~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1300 KYKDSDKNDYEK------------LKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HhhcCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334422 256999999999999999999999998877
No 17
>KOG0964|consensus
Probab=92.76 E-value=4 Score=47.38 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=61.4
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 152 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLls 152 (415)
+++-..|+|+++..-.+--+.++||.+.+ .+..|.|+.+++...+...+.-|...|......++...+-.+
T Consensus 695 ~~~~~~i~q~~~~~qk~e~~~~~~~~~~~---------~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~ 765 (1200)
T KOG0964|consen 695 EDIDQKIDQLNNNMQKVENDRNAFKREHE---------KLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSN 765 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888887764 445678888889999999999999988888888877776666
Q ss_pred hHHHHhh
Q psy10214 153 DLQSCLQ 159 (415)
Q Consensus 153 dfQscLs 159 (415)
.|.+.+.
T Consensus 766 ~~e~el~ 772 (1200)
T KOG0964|consen 766 YFESELG 772 (1200)
T ss_pred hHHHHHh
Confidence 6665444
No 18
>KOG3091|consensus
Probab=92.34 E-value=5 Score=43.38 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=52.0
Q ss_pred HHHHHHHhHHhHH-HHhhhhhcccccc---cccch--hhHhHhHHHHHHHHHHH---HHHHHHHHHHHHHhhhccCc---
Q psy10214 143 KIAVWQNLLSDLQ-SCLQVLTKEDEVS---TTLEK--DEIKLEIDQATLKFLDL---ARQMEAFFLQKRFLLSALKP--- 210 (415)
Q Consensus 143 KIavWqnLlsdfQ-scLs~LSkqE~se---r~~Dq--dEIKv~VEq~tnRFLD~---ARQLE~FFLQKrlllSa~KP--- 210 (415)
||+..++=+-+|. .+|+.+.+.|-+. ..+.+ +++.+..+-.+...-+. -..++.+|=+.|..-++++-
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~ 456 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQES 456 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhccccc
Confidence 8888888888887 6677767766331 23333 34444333211111111 12444444444444334332
Q ss_pred ----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q psy10214 211 ----ELIVKEDIVDLRHDLARKEELIKRHYDKIAVW-QNLLSDLQ 250 (415)
Q Consensus 211 ----e~vvKEEI~dLK~ELqRKErLIqKh~eKIeeW-QsvL~dlq 250 (415)
++...+....|..|.++...|+.-+++..+.- ..+.++++
T Consensus 457 ~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~~~l~E~~~ 501 (508)
T KOG3091|consen 457 YWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQEDIKHQLIEDLE 501 (508)
T ss_pred eeechhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHH
Confidence 22323333455555555555555555444444 44445554
No 19
>PRK09039 hypothetical protein; Validated
Probab=92.18 E-value=5.5 Score=40.45 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=26.2
Q ss_pred hhhccCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 204 LLSALKPEL-IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 204 llSa~KPe~-vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
.++...|+. .++.+|..|+.+|+.-+..|.-..++.++-+.-++++
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 4566777777777666666665555555544444444
No 20
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=91.96 E-value=8.3 Score=38.10 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=50.3
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHH-HHHhhhccCchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 172 EKDEIKLEIDQATLKFLDLARQMEAFFLQ-KRFLLSALKPEL---IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLL 246 (415)
Q Consensus 172 DqdEIKv~VEq~tnRFLD~ARQLE~FFLQ-KrlllSa~KPe~---vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL 246 (415)
+.++++..++.++-+|++.+-.+-.=|+. .+..+..++-+. ++.+||.+++.|+++.-+=++..+++.+.|++.+
T Consensus 72 ~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 72 NLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777787788888877777666652 233444444443 5577899999888777666777667766666554
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.96 E-value=22 Score=41.32 Aligned_cols=9 Identities=11% Similarity=0.608 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy10214 218 IVDLRHDLA 226 (415)
Q Consensus 218 I~dLK~ELq 226 (415)
+..++.+++
T Consensus 399 l~~l~~~i~ 407 (1163)
T COG1196 399 LEELKREIE 407 (1163)
T ss_pred HHHHHHHHH
Confidence 333333333
No 22
>PRK11637 AmiB activator; Provisional
Probab=91.84 E-value=17 Score=37.35 Aligned_cols=8 Identities=25% Similarity=0.247 Sum_probs=3.9
Q ss_pred CCccccCC
Q psy10214 348 SGMMFMGP 355 (415)
Q Consensus 348 ~~~~~~~~ 355 (415)
+.|+.+..
T Consensus 329 ~~Gi~i~~ 336 (428)
T PRK11637 329 WKGMVIGA 336 (428)
T ss_pred CCCEEeec
Confidence 44555543
No 23
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=91.08 E-value=18 Score=38.41 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCC
Q psy10214 212 LIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQGSTSSASGTTPPN 272 (415)
Q Consensus 212 ~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~spaq~~~~~~~~~~~~p~ 272 (415)
.+++.|-+.|..||+.|++-++.....++.=-+.|+.--. +| +|++.|.+-+.-|+||
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCik-aK--sq~~~p~~r~~~p~pn 409 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIK-AK--SQPMTPGPRPVGPVPN 409 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hc--cCCCCCCCCCCCCCCC
Confidence 3668889999999999999999888888888887776532 33 4555454444334443
No 24
>PF15469 Sec5: Exocyst complex component Sec5
Probab=91.02 E-value=12 Score=33.92 Aligned_cols=84 Identities=7% Similarity=0.118 Sum_probs=49.1
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHH---H
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQ---N 149 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWq---n 149 (415)
++++.=|+....+||+|-..++..+-+-+-..+....+..+.+ +.+-+.+.......+-.-|-+...|+.... +
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~---L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~ 78 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEK---LEESLNEASSKANSVFKPLLERREKADKLRNALE 78 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHH---HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5788899999999999999999988776655443222223322 233445555555444444444444444433 4
Q ss_pred hHHhHHHHhh
Q psy10214 150 LLSDLQSCLQ 159 (415)
Q Consensus 150 LlsdfQscLs 159 (415)
++..++-+|.
T Consensus 79 ~l~r~~flF~ 88 (182)
T PF15469_consen 79 FLQRNRFLFN 88 (182)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.91 E-value=31 Score=40.18 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
.+|+.-+.++=.-|..-+. |+.....+..+.-..++.+|+.+.+++.+++.++.+.++.+.....++
T Consensus 196 ~el~~~l~~L~~q~~~a~~-y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 262 (1163)
T COG1196 196 EELEKQLEKLERQAEKAER-YQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEEL 262 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333343333333333 333344445555666677777777777777777777766665555533
No 26
>KOG2391|consensus
Probab=90.67 E-value=24 Score=36.96 Aligned_cols=66 Identities=18% Similarity=0.075 Sum_probs=42.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 75 IKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL-KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 75 ~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~-kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
||++|-.++..=++.+++-|.==++ .+++.+ .-|..|++ ...+|+.|+.+.+.-+..-...|.+..
T Consensus 207 irasvisa~~eklR~r~eeeme~~~--aeq~slkRt~EeL~~------G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 207 IRASVISAVREKLRRRREEEMERLQ--AEQESLKRTEEELNI------GKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHh------hHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 8888888888877777765543333 233333 34677777 888888888888855555444444433
No 27
>KOG1883|consensus
Probab=90.62 E-value=1.7 Score=50.91 Aligned_cols=27 Identities=33% Similarity=0.254 Sum_probs=17.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhhh
Q psy10214 304 TMQPMSGMPQQQQQVQMQQQIHMQHMQ 330 (415)
Q Consensus 304 ~~q~~~~~~qq~qq~q~q~~~~~q~~~ 330 (415)
|||.+++++++|||++.+.||||||+.
T Consensus 1430 q~q~t~q~q~~Qqq~~~~~qqqlqhq~ 1456 (1517)
T KOG1883|consen 1430 QMQDTSQHQTIQQQSNHPTQQQLQHQI 1456 (1517)
T ss_pred hhhhhhHHHHHHHHhcchHHHHHHHhc
Confidence 455556666666666666777777765
No 28
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.41 E-value=34 Score=38.20 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+.++.++..+++..+.-+....++++.++.-++.++.
T Consensus 874 ~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~ 910 (1164)
T TIGR02169 874 EAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555566666655543
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.25 E-value=14 Score=36.96 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+.++.+++.++++++.-|+...+++.+...-+++++.
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555543
No 30
>KOG0977|consensus
Probab=89.95 E-value=30 Score=38.04 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=35.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----hhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 76 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALK-----PELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 76 ~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~k-----pe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
+.+|+..-.+|.+..+-...+=.+.+-.++.++ -.++.-....+.+|+.+||+|..|..+-|.
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 345555566666666666555555553333322 123333445566777888888877774433
No 31
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=89.83 E-value=2.4 Score=46.48 Aligned_cols=61 Identities=7% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q psy10214 188 LDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKR-------HYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 188 LD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqK-------h~eKIeeWQsvL~dlq 250 (415)
++.....|.+....+-.+... ..+..++..+++..+++-++||.. +.+++++-+..+..+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 620 (657)
T PTZ00186 553 VEVRNNAETQLTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECG 620 (657)
T ss_pred HHHHHHHHHHHHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444333221 234455566666666666666653 2334444445555443
No 32
>KOG0993|consensus
Probab=89.53 E-value=18 Score=39.05 Aligned_cols=52 Identities=27% Similarity=0.243 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhcChhHHHHhhhh----chhHHHHHHHHHHHHHHHHHHhh
Q psy10214 89 LARQMEAFFLQKRFLLSALKPELIVKEVNM----VTKDIVDLRHDLARKEELIKRHY 141 (415)
Q Consensus 89 ~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~----~~~di~eLR~ElaRKnaLLrkhy 141 (415)
.+.++|+=|.+||-.+-.-|-|.+-.+ |- -++|+..||.+|..-.+.....+
T Consensus 3 a~~~l~~e~nqkrk~~~~a~ee~~~rq-~a~~qa~q~dl~~lrtql~~a~aeme~ik 58 (542)
T KOG0993|consen 3 AQQQLEQEFNQKRKELYLAKEEDLKRQ-NAVLQAAQDDLGHLRTQLWEAQAEMENIK 58 (542)
T ss_pred chhhhhHHHHHhhhhcccchhhHHHhc-cchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 578999999999988877777666555 43 36788899999887765554433
No 33
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=89.53 E-value=44 Score=38.26 Aligned_cols=127 Identities=14% Similarity=0.210 Sum_probs=64.5
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhh---HHHHHHHhHHhHHHHhhhhhccc---cccc--ccchhhH----hHhHHHHH
Q psy10214 117 NMVTKDIVDLRHDLARKEELIKRHYD---KIAVWQNLLSDLQSCLQVLTKED---EVST--TLEKDEI----KLEIDQAT 184 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLrkhy~---KIavWqnLlsdfQscLs~LSkqE---~ser--~~DqdEI----Kv~VEq~t 184 (415)
..+++-..+||..-.|..+.|++.-. --.+.++|.++++.-+..|..+. .... ..+.... ..++++-+
T Consensus 465 G~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mm 544 (820)
T PF13779_consen 465 GDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMM 544 (820)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHH
Confidence 44555666777777777777776544 23456677777777777764331 1100 0011111 11133333
Q ss_pred HHHHHHHH---------HHH---HHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 185 LKFLDLAR---------QME---AFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 185 nRFLD~AR---------QLE---~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
++.-+.++ .|+ .-.=+.+. -+++. ..-.+.+..++....+|++..+-+++--+.+++..
T Consensus 545 d~ie~la~~G~~~~A~q~L~qlq~mmenmq~----~~~q~---~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~q~q~ 615 (820)
T PF13779_consen 545 DRIEELARSGRMDEARQLLEQLQQMMENMQN----AQPQQ---QQQQEMQQAMEELGDLLRRQQQLMDETFRQLQEQQ 615 (820)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----cCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 33333331 222 11111111 12232 34556667777777888887777777666666654
No 34
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=89.52 E-value=1.9 Score=43.73 Aligned_cols=104 Identities=18% Similarity=0.355 Sum_probs=53.2
Q ss_pred hHhHHHHHHHHHHHHHHH------------HHHHHHHHHHHhh---cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q psy10214 76 KLEIDQATLKFLDLARQM------------EAFFLQKRFLLSA---LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH 140 (415)
Q Consensus 76 ~~~veq~~~kFid~Arq~------------E~fFLqkr~~ls~---~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh 140 (415)
..-|+..+.+|+++++.+ ++|-.||+|++.+ .||++- ++.+ ||+--
T Consensus 50 D~~i~~~l~~f~~~S~~igg~V~~~a~~v~~aF~~qr~~L~~as~~kKP~~~---------~~~~----------lL~Pl 110 (312)
T PF01213_consen 50 DELINGPLKPFVELSKKIGGDVAEQAQLVKKAFQAQRKFLLVASKCKKPDQS---------ELQE----------LLKPL 110 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHBE---HH---------HHHH----------HCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChh---------hHHH----------HHHHH
Confidence 334788899999988765 5788888887754 455332 2222 33333
Q ss_pred hhHHHHHHHhHHhHH--HHhhhhhcc-cccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 141 YDKIAVWQNLLSDLQ--SCLQVLTKE-DEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF 203 (415)
Q Consensus 141 y~KIavWqnLlsdfQ--scLs~LSkq-E~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrl 203 (415)
.++|....++.+.=. .+|+.|++- |.+ .+.- =+.|+.+=-.|++.++..-.||.||.+
T Consensus 111 ~~~i~~i~~~ke~nR~s~~fNHLsavsEgi-~aLg----WV~v~p~P~~~V~e~~dsA~Fy~NRVL 171 (312)
T PF01213_consen 111 SEAIQKIQEFKEKNRGSKFFNHLSAVSEGI-PALG----WVAVEPKPAPYVKEMKDSAQFYTNRVL 171 (312)
T ss_dssp HHHHHHHHHHHHTTTTSTTHHHHHHHHCGG-GGGG----GGG--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHhh-heee----eeeeCCchHhHHHHHHHHHHHHHhHHH
Confidence 333333333333321 133444333 222 2221 111233445677888888889998854
No 35
>KOG0996|consensus
Probab=89.43 E-value=17 Score=43.07 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 221 LRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 221 LK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
++..++.....+..+..+|..|...++.+.
T Consensus 1017 ~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~ 1046 (1293)
T KOG0996|consen 1017 IENKLEAINGELNEIESKIKQPEKELKKLS 1046 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhCccc
Confidence 445566666666677777777776666654
No 36
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=89.39 E-value=20 Score=34.17 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=41.3
Q ss_pred CCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh-HHH
Q psy10214 67 LSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD-KIA 145 (415)
Q Consensus 67 ~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~-KIa 145 (415)
|...+-|+++..|+..+.+|-++. --|.-+++.=.++.++.++++.|..++.-|++.|. ++.
T Consensus 12 I~~~n~e~lk~~v~~~~~~Y~~~v-----------------vTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~ 74 (215)
T PF07083_consen 12 IEIFNFEELKAEVDEAVEKYKGYV-----------------VTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIK 74 (215)
T ss_pred eecCCHHHHHHHHHHHHHHhCCcc-----------------cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 444789999999998888774432 12333444444566666677777777777777776 354
Q ss_pred HHH
Q psy10214 146 VWQ 148 (415)
Q Consensus 146 vWq 148 (415)
.+.
T Consensus 75 ~Fe 77 (215)
T PF07083_consen 75 EFE 77 (215)
T ss_pred HHH
Confidence 444
No 37
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.38 E-value=39 Score=37.43 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10214 83 TLKFLDLARQMEAFFL 98 (415)
Q Consensus 83 ~~kFid~Arq~E~fFL 98 (415)
..+|+|-+-.+..|..
T Consensus 157 ~~~~~~~~~~~~~~~~ 172 (1179)
T TIGR02168 157 RRAIFEEAAGISKYKE 172 (1179)
T ss_pred HHHHHHHHccHHHHHH
Confidence 3444555544555543
No 38
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.22 E-value=15 Score=37.20 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
..+.++.++..+++.++.-|+...+++.++...++++++
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788888888888888888888888888888888876
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.08 E-value=26 Score=42.49 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHh
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 153 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsd 153 (415)
+|.+.-.||.++-+.|++.+.+...|.++...
T Consensus 311 rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 311 EMARELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555577777777778888877777777664
No 40
>KOG0995|consensus
Probab=88.79 E-value=43 Score=37.14 Aligned_cols=118 Identities=25% Similarity=0.178 Sum_probs=66.2
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHH-----
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVW----- 147 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavW----- 147 (415)
.|.+..+.--++||.+.-.+|+.==-..==.|+.++.|...|| .|+..|+.+..+..+-|.+..-..+.+
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kE-----eE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~ 339 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKE-----EEIEKLQKENDELKKQIELQGISGEDVERMNL 339 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4556667777889999999888754333345677788877777 355555555555554444332222222
Q ss_pred -----HHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHH
Q psy10214 148 -----QNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFL 199 (415)
Q Consensus 148 -----qnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFL 199 (415)
+.-++.+++.+..|++..-. ...+|....+..-..|+++.......-|
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~----~~l~~~~~f~~le~~~~~~~~l~~~i~l 392 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWE----LKLEIEDFFKELEKKFIDLNSLIRRIKL 392 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344455555555554321 1333444444444677777766665555
No 41
>KOG4368|consensus
Probab=88.67 E-value=21 Score=39.93 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHHhHH
Q psy10214 128 HDLARKEELIKRHYDKIAVWQNLLSDLQ 155 (415)
Q Consensus 128 ~ElaRKnaLLrkhy~KIavWqnLlsdfQ 155 (415)
+|.++-+++|.+....++.++++|.++-
T Consensus 87 ~~~~~~~k~l~~~~l~~~~~~~~l~~~~ 114 (757)
T KOG4368|consen 87 AVEQQMQKLLEETQLDMNEFDNLLQPII 114 (757)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3445556777777777777777776654
No 42
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=88.64 E-value=5.3 Score=43.46 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhhcc-CchhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhc
Q psy10214 189 DLARQMEAFFLQKRFLLSAL-KPELIVKEDIVDLRHDLARKEELIK--------RHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 189 D~ARQLE~FFLQKrlllSa~-KPe~vvKEEI~dLK~ELqRKErLIq--------Kh~eKIeeWQsvL~dlq~ 251 (415)
+.-..+|.|.+..+-+++.. ..+.+..++..+|+..+++.++||. .+.+|+++-+.+++.+..
T Consensus 539 eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~ 610 (653)
T PTZ00009 539 EAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMT 610 (653)
T ss_pred HHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 33356888888888777531 2334668888999999999999995 346777777777777754
No 43
>KOG3227|consensus
Probab=88.62 E-value=5.7 Score=39.08 Aligned_cols=12 Identities=42% Similarity=0.420 Sum_probs=7.9
Q ss_pred CCCCCCccccCC
Q psy10214 344 GGPSSGMMFMGP 355 (415)
Q Consensus 344 g~~~~~~~~~~~ 355 (415)
.++++++|-+-.
T Consensus 164 ~gp~sq~m~~~~ 175 (231)
T KOG3227|consen 164 AGPSSQQMPQQE 175 (231)
T ss_pred CCcccccccccc
Confidence 556677777665
No 44
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=88.56 E-value=7.2 Score=42.21 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=27.1
Q ss_pred HhhhhchhHHHHHHHHHHHHH---HHHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 114 KEVNMVTKDIVDLRHDLARKE---ELIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 114 ke~n~~~~di~eLR~ElaRKn---aLLrkhy~KIavWqnLlsdfQscL 158 (415)
++++.+.+++.++.+++.+.+ +.+++..+.++.|.++.-++....
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ld~~l~~~~ 140 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLL 140 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHhC
Confidence 344455555555555544444 445566667888988777775443
No 45
>KOG4302|consensus
Probab=88.45 E-value=21 Score=39.91 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=49.8
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHH-------HHhhhhchhHHH-HHHHHHHHHHHHHHHhhhHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI-------VKEVNMVTKDIV-DLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i-------~ke~n~~~~di~-eLR~ElaRKnaLLrkhy~KI 144 (415)
.+++.+..+-.+|.-|++.+|..++. |+..|.-..+.+ +.++|..+-|+. .+++|+.|.++|=..+
T Consensus 236 ~~l~~~k~qr~~kl~~l~~~~~~LWn--~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~---- 309 (660)
T KOG4302|consen 236 KKLKEEKKQRLQKLQDLRTKLLELWN--LLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASN---- 309 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHh----
Confidence 45667777777888888888887765 233333333333 567777666654 4778888887653333
Q ss_pred HHHHHhHHhHHHHhhhh
Q psy10214 145 AVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 145 avWqnLlsdfQscLs~L 161 (415)
..+|..+.+..|..|
T Consensus 310 --mKeli~k~r~Eleel 324 (660)
T KOG4302|consen 310 --MKELIEKKRSELEEL 324 (660)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 344555555555544
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.43 E-value=32 Score=40.29 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=14.5
Q ss_pred CCchhhHhHhHHHHHHHHHHHHH
Q psy10214 69 PLEKDEIKLEIDQATLKFLDLAR 91 (415)
Q Consensus 69 ~~~k~E~~~~veq~~~kFid~Ar 91 (415)
..++++++..++.+.....++-.
T Consensus 599 ~~~ee~L~~~l~~~~~~l~~~~~ 621 (1201)
T PF12128_consen 599 AASEEELRERLEQAEDQLQSAEE 621 (1201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHH
Confidence 45777888877766655444433
No 47
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.39 E-value=32 Score=40.52 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=8.0
Q ss_pred chhhHhHhHHHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKF 86 (415)
Q Consensus 71 ~k~E~~~~veq~~~kF 86 (415)
+.+||..+++..=.++
T Consensus 823 s~~ele~ei~~~~~el 838 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHEL 838 (1311)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4456665555443333
No 48
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=88.30 E-value=16 Score=35.06 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 79 IDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 79 veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscL 158 (415)
+.-++.||.++-+.||+||- .++.. -+.+|.. -+..+++|-=++=.-.||+|+|. |+++..++...+
T Consensus 59 i~~~l~kFs~~l~ei~~~~~---~Ll~~--~~~~l~~------~L~~F~k~dl~~vKe~kK~FdK~--s~~~d~al~K~~ 125 (200)
T cd07639 59 MAECLEKFSDGLNHILDSHA---ELLEA--TQFSFKQ------QLQLLVKEDLRGFRDARKEFERG--AESLEAALQHNA 125 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHH------HHHHHHHhhhHHHHHHhhhHhhc--chhHHHHHHHHh
Confidence 88899999999999999982 33322 3333333 45555444444445678889987 777777755444
Q ss_pred h
Q psy10214 159 Q 159 (415)
Q Consensus 159 s 159 (415)
.
T Consensus 126 ~ 126 (200)
T cd07639 126 E 126 (200)
T ss_pred h
Confidence 3
No 49
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=88.21 E-value=7.4 Score=39.72 Aligned_cols=53 Identities=30% Similarity=0.365 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------c-----------ccCCCCCCCCCCCC
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL-Q------G-----------WAKSPAHQGSTSSA 265 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl-q------~-----------~~~spaq~~~~~~~ 265 (415)
-+|+-|+-+|.-|..||.=|+||+-.|..-..-|+-| + + .+.||+..++.+++
T Consensus 128 QLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~~rde~~l~~~c~SP~~sLt~sst 198 (305)
T PF15290_consen 128 QLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGSLRDEGCLDFSCDSPAKSLTRSST 198 (305)
T ss_pred HHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhccccccCCcCCccCCcccccccccc
Confidence 5688888888899999999999999988754444443 1 1 45677777766553
No 50
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.65 E-value=26 Score=33.41 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=63.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHH
Q psy10214 119 VTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFF 198 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FF 198 (415)
+..|+.+|+.+|.|..++++.-++-=..+.+....|=+.|..+... +.... -|..++.+|.+..+.+++|.
T Consensus 7 ~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~-----~~gd~----~i~~~L~kF~~~l~ei~~~~ 77 (200)
T cd07637 7 VETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQ-----CKKDE----MISECLDKFGDSLQEMVNYH 77 (200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCch----HHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999988888877775434444444454555444332 22211 26677789999999998887
Q ss_pred HHHHHhh--hccC-chhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 199 LQKRFLL--SALK-PELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 199 LQKrlll--Sa~K-Pe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
.-..-.. +... -...+++||..+|..=.+-|+.-++|
T Consensus 78 ~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~y 117 (200)
T cd07637 78 MILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDL 117 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6332111 1111 23356777777765443334433333
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.47 E-value=67 Score=37.80 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q psy10214 215 KEDIVDLRHDLA-RKEELIKRHYDKIAVWQNLLSDLQGWAKSP 256 (415)
Q Consensus 215 KEEI~dLK~ELq-RKErLIqKh~eKIeeWQsvL~dlq~~~~sp 256 (415)
.+++..+..++. +.+..+.++......++.-+..++..+++|
T Consensus 419 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 461 (1201)
T PF12128_consen 419 EEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNP 461 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344445555544 455556666666666666666666555533
No 52
>PRK05560 DNA gyrase subunit A; Validated
Probab=87.38 E-value=12 Score=42.06 Aligned_cols=128 Identities=15% Similarity=0.252 Sum_probs=71.2
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH---HHhhhhhcccccccccchhhHhHhHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ---SCLQVLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ---scLs~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
...+.|++||=.+|.++-..|.+..-+... .++++...+.-++. ..+..+.+. -+.+|++..+.
T Consensus 340 ~~~~~il~~~~~~r~~~~~~r~~~~l~~~~-----~~~~~l~g~~~~~~~~d~vI~iir~s------~~~~~~~~~L~-- 406 (805)
T PRK05560 340 LNLKEILEAFLEHRKEVITRRTRFELRKAE-----ERAHILEGLLIALDNIDEVIALIRAS------PTPAEAKEGLM-- 406 (805)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHcC------CCHHHHHHHHH--
Confidence 457889999999988888877665444433 34433333333322 222222111 13344443333
Q ss_pred HHHHHHHH-HHHHHHHHHHHH-hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 184 TLKFLDLA-RQMEAFFLQKRF-LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 184 tnRFLD~A-RQLE~FFLQKrl-llSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.+| +.. .+.| +-|..++ .+|...-+ -+++|+.+|+.||++.+.+|....+.++.|..-|.++..
T Consensus 407 -~~f-~~~~~qa~-~IL~m~L~~LT~~e~~-kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikk 472 (805)
T PRK05560 407 -ERF-GLSEIQAQ-AILDMRLQRLTGLERD-KIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKE 472 (805)
T ss_pred -Hhc-CCCHHHHH-HHHHhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 222 111 1221 2222222 12222222 347889999999999999998888888888888888855
No 53
>KOG0999|consensus
Probab=87.23 E-value=41 Score=37.65 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=18.9
Q ss_pred hhhHhHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCchhh
Q psy10214 173 KDEIKLEIDQATLKFLDLAR-QMEAFFLQKRFLLSALKPELI 213 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~AR-QLE~FFLQKrlllSa~KPe~v 213 (415)
.+|++..-.+-..-+-+|+- .=|+.-|||.+ |.++..+|
T Consensus 155 r~elKe~KfRE~RllseYSELEEENIsLQKqV--s~LR~sQV 194 (772)
T KOG0999|consen 155 RDELKEYKFREARLLSEYSELEEENISLQKQV--SNLRQSQV 194 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH--HHHhhhhh
Confidence 44555444433333334442 33456777743 55555554
No 54
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.51 E-value=25 Score=33.78 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHH
Q psy10214 119 VTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFF 198 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FF 198 (415)
+..|+.+|+.++.|.....++-++=-..+-+-...|-..|..+.+ .+.+.+ -+..++.+|.+.-+.+++|.
T Consensus 7 ~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~-----~~~~De----~i~~~l~kF~~~l~ei~~~~ 77 (200)
T cd07638 7 VEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQ-----YSSKDA----VIETSLTKFSDTLQEMINYH 77 (200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----hCCcch----hhHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999998655555666777777777744 122222 45667788989888888875
Q ss_pred H----HHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 199 L----QKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHY 236 (415)
Q Consensus 199 L----QKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~ 236 (415)
- |....+. .+-+..++++|.+.|..=.+-|+.-+++.
T Consensus 78 ~~L~~q~~~~l~-~~L~~F~k~dl~~vke~kk~FdK~s~~~~ 118 (200)
T cd07638 78 TILFDQAQRSIK-AQLQTFVKEDLRKFKDAKKQFDKVSEEKE 118 (200)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Confidence 4 2221110 11233557777766665444444444433
No 55
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.33 E-value=22 Score=33.79 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 179 EIDQATLKFLDLARQMEAFFLQKRFLLS--ALKP-ELIVKEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 179 ~VEq~tnRFLD~ARQLE~FFLQKrlllS--a~KP-e~vvKEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
.|..++.+|.+..+.+++++....-... -..| +..+|+||..+|..=.+-|..-.+|...+
T Consensus 58 ~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al 121 (200)
T cd07603 58 LVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNAL 121 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999998774332111 1223 44668888877744444444444443333
No 56
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=85.89 E-value=24 Score=38.02 Aligned_cols=141 Identities=14% Similarity=0.165 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH-HHHHHhhh-HHHHHHHhHHhHHHHh
Q psy10214 81 QATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE-ELIKRHYD-KIAVWQNLLSDLQSCL 158 (415)
Q Consensus 81 q~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn-aLLrkhy~-KIavWqnLlsdfQscL 158 (415)
.+=++|||=--.+|+|+-||...++. ....++.. -+..+. ..|+.+-. +|. +++++.+.++
T Consensus 351 ~~R~~fldeL~EL~aFL~qRl~El~~-~~~~~l~~-------------~~~~~ap~~lq~~t~~~i~---~ml~~V~~ii 413 (507)
T PF05600_consen 351 ETRNQFLDELLELEAFLKQRLYELSN-EESSSLSF-------------SQFQNAPSILQQQTAESIE---EMLSAVEEII 413 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcc-cccchHHH-------------HHhhhccHHHHhcCHHHHH---HHHHHHHHHH
Confidence 45578999999999999999888864 22222222 111111 22332222 343 4477777888
Q ss_pred hhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 159 QVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDK 238 (415)
Q Consensus 159 s~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eK 238 (415)
..|+...-. +.........-||+.+..|....+..+.+-..+. .+.+-+.++..++....--|....++
T Consensus 414 ~~Lt~~~~~-~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~----------~l~~kr~e~~~e~~~l~pkL~~l~~~ 482 (507)
T PF05600_consen 414 SQLTNPRTQ-HLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKRE----------DLEEKRQEAQEEQQELEPKLDALVER 482 (507)
T ss_pred HHhcCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 877654321 2222333344477777777776666666554332 22444666666666666667777777
Q ss_pred HHHHHHHHHHH
Q psy10214 239 IAVWQNLLSDL 249 (415)
Q Consensus 239 IeeWQsvL~dl 249 (415)
-++.|+.++.-
T Consensus 483 Tr~Lq~~iE~~ 493 (507)
T PF05600_consen 483 TRELQKQIEAD 493 (507)
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 57
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=85.77 E-value=36 Score=34.17 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 226 ARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 226 qRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
++.+++|++|..+...|..+++.|-.
T Consensus 201 ErLe~iI~~Y~~~~i~~~e~~~eLi~ 226 (335)
T PF11867_consen 201 ERLEEIIEKYNNRSISSEEVIEELIK 226 (335)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 46788888888887778888777744
No 58
>KOG4274|consensus
Probab=85.61 E-value=8.3 Score=42.79 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q psy10214 189 DLARQMEAFFLQK 201 (415)
Q Consensus 189 D~ARQLE~FFLQK 201 (415)
+.||+||+|++-|
T Consensus 32 k~a~~mE~hVF~K 44 (742)
T KOG4274|consen 32 KSAKDMESHVFLK 44 (742)
T ss_pred cchHHHHHHHHHh
Confidence 6678999987744
No 59
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=85.48 E-value=2.2 Score=35.13 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=46.5
Q ss_pred HHHHHhhcChhHHHHhhhhchhHHHHHHHH-----HHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcc-cccccccch
Q psy10214 100 KRFLLSALKPELIVKEVNMVTKDIVDLRHD-----LARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKE-DEVSTTLEK 173 (415)
Q Consensus 100 kr~~ls~~kpe~i~ke~n~~~~di~eLR~E-----laRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkq-E~ser~~Dq 173 (415)
+...|+...-+.+-+||+.+..++..+..+ -.+-.+|+++|+.-+..|-....++..+|..+-.. +.+ .
T Consensus 21 ~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~-----~ 95 (118)
T PF07739_consen 21 RLASLSKEEWQELQKEWDELFAELAALMEEGVDPDSPEVQELAERWMELINQFTGGDPELLRGLAQMYVEDPRF-----A 95 (118)
T ss_dssp ------------TTHHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHHHSS---HHHHHHHHHHTTSTHHH-----H
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCHHH-----H
Confidence 335555555666667777766666655554 12234888899988888877777777777766322 222 2
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHH
Q psy10214 174 DEIKLEIDQATLKFLDLARQMEAFF 198 (415)
Q Consensus 174 dEIKv~VEq~tnRFLD~ARQLE~FF 198 (415)
..+...+...+.+||. ++++.|+
T Consensus 96 ~~~~~~~~~~~~~fi~--~Ai~~y~ 118 (118)
T PF07739_consen 96 AMYDKKFGPGLAEFIE--KAIEAYA 118 (118)
T ss_dssp HHHG-GGSTTHHHHHH--HHHHHHH
T ss_pred hhccccCCHHHHHHHH--HHHHHHC
Confidence 2223345556677777 6666664
No 60
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=85.20 E-value=3.4 Score=33.92 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHH-HhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhh
Q psy10214 92 QMEAFFLQKRFL-LSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHY 141 (415)
Q Consensus 92 q~E~fFLqkr~~-ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy 141 (415)
-+.-|||..|+. .+-.-.+.+++|--...-++..|++|+.++..+|++--
T Consensus 20 KLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 20 KLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366799999998 44556678888844556678888899998888887644
No 61
>KOG4592|consensus
Probab=84.90 E-value=3 Score=46.27 Aligned_cols=31 Identities=29% Similarity=0.669 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCcchhhHHhhccCCCCCC
Q psy10214 381 GNLGPGGMGPGGLLQGPLAYLEKTTSNIGLPD 412 (415)
Q Consensus 381 ~~~~~~~~~~~~~~~~~la~le~~tsnig~~~ 412 (415)
++-+|-||+ |..+++|.-||-+.----|||.
T Consensus 219 ~s~~p~g~~-~~~vP~pvi~~pqmPlQ~gm~~ 249 (728)
T KOG4592|consen 219 SSQQPNGIG-GNRVPPPVIYLPQMPLQQGMPH 249 (728)
T ss_pred CccCccCCC-CCCCCCCccccccChhhcCCCC
Confidence 445555553 5667777777655443344443
No 62
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=84.83 E-value=13 Score=43.88 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=109.6
Q ss_pred ccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhH
Q psy10214 43 GLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKD 122 (415)
Q Consensus 43 ~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~d 122 (415)
.|.+..|...||. .+.+.. ++-.=-++|..-|.+|-|.---+|- .-++|+..-.--.|-++.= |
T Consensus 1175 kL~dAyl~eitKq-IsaLe~--------e~PKnltdvK~missf~d~laeiE~-LrnErIKkHGaSkePLDlS------D 1238 (1439)
T PF12252_consen 1175 KLYDAYLVEITKQ-ISALEK--------EKPKNLTDVKSMISSFNDRLAEIEF-LRNERIKKHGASKEPLDLS------D 1238 (1439)
T ss_pred hhHHHHHHHHHHH-HHHHHh--------hCCCchhhHHHHHHHHHhhhhHHHH-HHHHHhhccCCCCCccchh------h
Confidence 4667777777775 333321 1111224777888899888888875 7888988877666666666 9
Q ss_pred HHHHHHHHHHHH-----HHHHHhhhHHH-----HHHHhHHhHHHHhhhhhcccccccccc-hhhHhHhHHHHHHHHHHHH
Q psy10214 123 IVDLRHDLARKE-----ELIKRHYDKIA-----VWQNLLSDLQSCLQVLTKEDEVSTTLE-KDEIKLEIDQATLKFLDLA 191 (415)
Q Consensus 123 i~eLR~ElaRKn-----aLLrkhy~KIa-----vWqnLlsdfQscLs~LSkqE~ser~~D-qdEIKv~VEq~tnRFLD~A 191 (415)
|.+||.+|++-| .||+.....++ -++.=+...|.||..|.+-+..-..++ ....+.++.+..+-|++.-
T Consensus 1239 lDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQ 1318 (1439)
T PF12252_consen 1239 LDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQ 1318 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 45555544333 333445566777776644332101111 1223444555555555543
Q ss_pred H----------HHHHHHHHHHHhhhc----------cCchhhhHH----------------------HHHHHHHHHHHHH
Q psy10214 192 R----------QMEAFFLQKRFLLSA----------LKPELIVKE----------------------DIVDLRHDLARKE 229 (415)
Q Consensus 192 R----------QLE~FFLQKrlllSa----------~KPe~vvKE----------------------EI~dLK~ELqRKE 229 (415)
+ .+|++..|.|.+-.+ .|-+.+-+. ...+=+.+|+.|+
T Consensus 1319 KAYP~M~QlQ~ksealI~qLRelC~~h~~~l~k~~~~r~~el~~~~~e~Gi~~~~~~~~~~~t~~iglt~der~~i~~K~ 1398 (1439)
T PF12252_consen 1319 KAYPAMVQLQFKSEALIIQLRELCEAHQDNLAKTRKTRLQELTKQDREGGITGMVGNMFQGLTDYIGLTTDERLEIAMKQ 1398 (1439)
T ss_pred hhchHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccccchhhhhhHHHHhhhhhhccchhHHHHHHHHH
Confidence 3 346666666654322 111111111 1122356677777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10214 230 ELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 230 rLIqKh~eKIeeWQsvL~dl 249 (415)
+.+++.++.+..=+.-+++|
T Consensus 1399 ~~l~~fk~~Lnndk~di~qL 1418 (1439)
T PF12252_consen 1399 QSLARFKTDLNNDKYDIDQL 1418 (1439)
T ss_pred HHHHHHHHhhccCcccHHHH
Confidence 77777777776655555555
No 63
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=84.65 E-value=7.9 Score=32.52 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+..+..|..+++..+.-+.+..++++.++..++.+
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666667777776666654
No 64
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=84.40 E-value=37 Score=36.14 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=29.4
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscL 158 (415)
+..+.|+++|=.+|.++-..|.+. +|++...++++..++.-++..+.
T Consensus 315 ~~l~~iL~~f~~~R~~~~~rR~~~-----~l~k~~~rl~il~g~~~~i~~id 361 (445)
T cd00187 315 LNLKEILQEFLDHRLEVYTRRKEY-----ELGKAEARLHILEGLLKAILNID 361 (445)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHH
Confidence 457889999888888777665544 44455555555555555554443
No 65
>PF05427 FIBP: Acidic fibroblast growth factor binding (FIBP) ; InterPro: IPR008614 Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF [].; GO: 0017134 fibroblast growth factor binding
Probab=84.16 E-value=18 Score=37.92 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhh--------HHH--HHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHH
Q psy10214 119 VTKDIVDLRHDLARKEELIKRHYD--------KIA--VWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFL 188 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLrkhy~--------KIa--vWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFL 188 (415)
|-.|+-|+|.=+.+|+. |.+|.. ++. ..+++++.|.+..+.|..-.. +.++..|++.--+-.+.|||
T Consensus 229 FlqdLRdlK~ll~~k~~-ld~hk~lV~~~L~~~l~~~~l~elesnFK~l~Ralv~Ia~--gLs~sKElRdlF~DLvEK~I 305 (361)
T PF05427_consen 229 FLQDLRDLKTLLNDKDE-LDQHKHLVCRRLKGKLSERSLQELESNFKSLSRALVNIAS--GLSHSKELRDLFEDLVEKFI 305 (361)
T ss_pred HHHHHHHHHHHhcChhH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHh
Confidence 45588888876655443 344433 444 677889999988888755432 56788999888777889999
Q ss_pred HHHH-------HHHHHHHHH
Q psy10214 189 DLAR-------QMEAFFLQK 201 (415)
Q Consensus 189 D~AR-------QLE~FFLQK 201 (415)
+..| +++.||-..
T Consensus 306 EPlr~~~Wt~~dl~~FL~ay 325 (361)
T PF05427_consen 306 EPLRQAGWTKEDLRLFLSAY 325 (361)
T ss_pred HHHHHCCCCHHHHHHHHHHH
Confidence 9996 566666533
No 66
>KOG1854|consensus
Probab=84.11 E-value=79 Score=35.61 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=57.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQs 156 (415)
+-||+--..|+|. +..|.||+.+-+.=-.+.-+-+.++ ++-.|+.+-+..|+.+..|+... ..++..+
T Consensus 325 ~rvdql~~~l~d~-k~~~~~~~~~aiEk~Rl~~~~a~~~---------~~~~~~~~h~~~~~~E~~~~~~~--~~~~~~~ 392 (657)
T KOG1854|consen 325 TRVDQLQKELEDQ-KADEELHIKRAIEKQRLQDSRALRA---------QLEYELEAHRRELQQELFKLIEE--IRSSSKN 392 (657)
T ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhhHhhhHH---------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3344443444431 2235578776554434443333333 34444444444455555443222 2333333
Q ss_pred Hhh-hhhcccccccccchhhHhHhHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q psy10214 157 CLQ-VLTKEDEVSTTLEKDEIKLEIDQATLKF-LDLARQMEAFFLQKRFLL 205 (415)
Q Consensus 157 cLs-~LSkqE~ser~~DqdEIKv~VEq~tnRF-LD~ARQLE~FFLQKrlll 205 (415)
.++ .|..+... +-|.|+.-|.+.-+.| |+-.+.+|.-.||.|-+.
T Consensus 393 el~~ql~~qa~a----h~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl~ 439 (657)
T KOG1854|consen 393 ELRNQLKRQAKA----HLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNLH 439 (657)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcch
Confidence 333 23222322 5677777777655555 566688999899887655
No 67
>KOG2129|consensus
Probab=83.95 E-value=69 Score=34.82 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+.+|-.+.+.|.+|..+.|.+-.+|.+.--.+|++-
T Consensus 283 y~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEs 318 (552)
T KOG2129|consen 283 YRAEEVDHREENERLQRKLINELERREALCRMLSES 318 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355666677777777777777777776655555544
No 68
>PF13514 AAA_27: AAA domain
Probab=83.81 E-value=93 Score=36.16 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCh-------hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH
Q psy10214 82 ATLKFLDLARQMEAFFLQKRFLLSALKP-------ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154 (415)
Q Consensus 82 ~~~kFid~Arq~E~fFLqkr~~ls~~kp-------e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf 154 (415)
.-.+.-.+-+.++.|.-+-..++..+.+ +..+.++...-++..+...++.+.++-|.+.-..+..+..-++.+
T Consensus 748 ~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 827 (1111)
T PF13514_consen 748 LRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEEL 827 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666677666666666555 234443333222333333444444555555555666666666666
Q ss_pred HHHhhhhhcccccccccchhhHhHhHHH------HHHHHHHHHHHHHH----HHH-HHHHhhhccCchhhhHHHHHHHHH
Q psy10214 155 QSCLQVLTKEDEVSTTLEKDEIKLEIDQ------ATLKFLDLARQMEA----FFL-QKRFLLSALKPELIVKEDIVDLRH 223 (415)
Q Consensus 155 QscLs~LSkqE~ser~~DqdEIKv~VEq------~tnRFLD~ARQLE~----FFL-QKrlllSa~KPe~vvKEEI~dLK~ 223 (415)
+..+..|.... ++.+.+++...+++ ...+.-+.-++++. ..+ .....+...-+. .++.++.+++.
T Consensus 828 ~~~l~~L~~~a---~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~-~l~~~l~~l~~ 903 (1111)
T PF13514_consen 828 EAELAELLEQA---GVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPD-ELEAELEELEE 903 (1111)
T ss_pred HHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHH-HHHHHHHHHHH
Confidence 66665553322 23334444332221 11111111122211 000 000011111111 23566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 224 DLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 224 ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
++++.+.-+....+++...+.-|+.+.
T Consensus 904 ~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 904 ELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777666666664
No 69
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.67 E-value=83 Score=35.50 Aligned_cols=86 Identities=22% Similarity=0.221 Sum_probs=45.4
Q ss_pred chhhHhHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLD----LARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAV 146 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid----~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIav 146 (415)
+.+|..--+-++++.|-+ .... =.+-+++|..+-..+-|+-++|.+ ++.+.++++..+.+.|.+-|+.|..
T Consensus 533 ~~~E~l~lL~~a~~vlreeYi~~~~~-ar~ei~~rv~~Lk~~~e~Ql~~L~----~l~e~~~~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEYIEKQDL-AREEIQRRVKLLKQQKEQQLKELQ----ELQEERKSLRESAEKLAERYEEAKD 607 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556677777633 2211 135577887765555555556533 4444555555566666666665554
Q ss_pred HHHhHH-hHHHHhhhh
Q psy10214 147 WQNLLS-DLQSCLQVL 161 (415)
Q Consensus 147 WqnLls-dfQscLs~L 161 (415)
-++.+. -++.++..+
T Consensus 608 ~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 608 KQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 443322 244444433
No 70
>KOG0964|consensus
Probab=83.66 E-value=51 Score=38.99 Aligned_cols=67 Identities=27% Similarity=0.245 Sum_probs=35.2
Q ss_pred hcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 162 TKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 162 SkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
.++..-..-+.++|-+.||. +.++++.+.+... ...+.+++.||.+++.++..+.+-|+++-.-|.+
T Consensus 377 ~Kqgr~sqFssk~eRDkwir---~ei~~l~~~i~~~----------ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e 443 (1200)
T KOG0964|consen 377 AKQGRYSQFSSKEERDKWIR---SEIEKLKRGINDT----------KEQENILQKEIEDLESELKEKLEEIKELESSINE 443 (1200)
T ss_pred HhhccccccCcHHHHHHHHH---HHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 44433335677889999988 3334433322221 1123344556666666665555555555554443
No 71
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=83.59 E-value=39 Score=31.67 Aligned_cols=90 Identities=14% Similarity=0.260 Sum_probs=53.0
Q ss_pred HHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHH
Q psy10214 143 KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLR 222 (415)
Q Consensus 143 KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK 222 (415)
|+++.-.-+++++...+.|.+-..++...|.+.+ ++|..+.+.-..|....++... ...+-..++.
T Consensus 85 K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~i-----~~vp~~~~kL~~L~~~~~~Q~e---------~~~~ls~~~~ 150 (174)
T PF07426_consen 85 KLQIILAEEDEIKSTAELLEKIKSLEPVLDSESI-----RNVPELCDKLQKLSQIHLEQQE---------ESEELSEEVQ 150 (174)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHHH-----hhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 5555556666666666655554445455665555 2333333444445544443222 2244456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 223 HDLARKEELIKRHYDKIAVWQNLL 246 (415)
Q Consensus 223 ~ELqRKErLIqKh~eKIeeWQsvL 246 (415)
.=++++..++....++..+|..+|
T Consensus 151 ~Ll~~YN~ii~~lSk~Fv~wD~~l 174 (174)
T PF07426_consen 151 ELLQQYNKIILLLSKQFVQWDEIL 174 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 668888888888888888898764
No 72
>KOG0250|consensus
Probab=83.54 E-value=71 Score=37.85 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhh
Q psy10214 112 IVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLT 162 (415)
Q Consensus 112 i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LS 162 (415)
+.+++|+..+.|...+..+.+..+.|++.|.|++-...-+..++.-+..+.
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~ 329 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELK 329 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344555555555555555556667777777777777655566665555543
No 73
>PRK10350 hypothetical protein; Provisional
Probab=83.52 E-value=0.29 Score=44.71 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhh------cCCCCCCCC--CCCCCCCCCccccC
Q psy10214 309 SGMPQQQQQVQMQQQIHMQHMQQ------QGMGPGGPP--SGPGGPSSGMMFMG 354 (415)
Q Consensus 309 ~~~~qq~qq~q~q~~~~~q~~~q------~~~~~~~~p--~~~g~~~~~~~~~~ 354 (415)
..+.|++|+|.+.+|+++|.++. ++.++|+.+ .++=.-..+||.-+
T Consensus 52 ~~LnQqlq~Qtq~qQQ~LQ~Ql~~n~QRiqq~qPgn~~~~~Q~LpN~nGGML~~ 105 (145)
T PRK10350 52 GMLNQQLKTQTRLQQQHLQNQINNNSQRVQQGQPGNNPARQQMLPNTNGGMLNS 105 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCcCCCCccccC
Confidence 33444445555556666666553 456666643 44444556677633
No 74
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=83.51 E-value=60 Score=33.78 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=32.3
Q ss_pred chhHhhhhhhccccCCCCC--CCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 45 LQGPLAYLEKTTSNIGLPD--GRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQ 99 (415)
Q Consensus 45 f~~~l~~~~~~~~~~~~~~--~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLq 99 (415)
||.|...+.-+|+...... .+.+.|+.+|- .+|+-++...-+....||+.+..
T Consensus 219 fDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da--~El~~V~~el~~~~~~~~~~~~~ 273 (412)
T PF04108_consen 219 FDQCVTAVRHTEGEPMSEEERQEMLEVLENDA--QELPDVVKELQERLDEMENNEER 273 (412)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766655222211 22333444442 35677788888888888888877
No 75
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=83.48 E-value=30 Score=31.92 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHH-----------------HHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHH
Q psy10214 121 KDIVDLRHDLARKE-----------------ELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 121 ~di~eLR~ElaRKn-----------------aLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
+.+.++.+|+++|. +.+=+.|.+. -++.++.|...|..++.+ -.++.|...|+.
T Consensus 3 dk~~eiI~~IA~khgI~L~~DDPILil~TiNe~ll~~~~~a--q~~~l~~fk~elE~~~~~-------w~~dak~kAEki 73 (144)
T PF11657_consen 3 DKIEEIIAEIARKHGIALSRDDPILILQTINERLLEDSAKA--QQEQLDQFKEELEEIASR-------WGEDAKEKAEKI 73 (144)
T ss_pred cHHHHHHHHHHHHcCCccCCCCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 46778888888885 2222223222 256677777777666443 345778888999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10214 184 TLKFLDLARQMEAFFLQ 200 (415)
Q Consensus 184 tnRFLD~ARQLE~FFLQ 200 (415)
++..+.+++.-=.-+++
T Consensus 74 L~aal~~ske~m~~~l~ 90 (144)
T PF11657_consen 74 LNAALAASKEAMNKILQ 90 (144)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888654333343
No 76
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=83.40 E-value=50 Score=35.48 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=24.2
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLL 104 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~l 104 (415)
-|+||+..|+..-..|+......+..-.+-+.+.
T Consensus 26 ~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~ 59 (593)
T PF06248_consen 26 LKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLA 59 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3677777777777888888888877765554443
No 77
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.33 E-value=91 Score=35.70 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=17.0
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 115 EVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 115 e~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
+++++..|+..||.++.+|+..|.+--.
T Consensus 337 ~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 337 EAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555443
No 78
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=83.29 E-value=26 Score=29.46 Aligned_cols=32 Identities=3% Similarity=0.063 Sum_probs=22.3
Q ss_pred HHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 111 LIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 111 ~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
.++.+||..++++..+-.++++.+.-+++|..
T Consensus 3 ~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~ 34 (105)
T cd00632 3 EQLAQLQQLQQQLQAYIVQRQKVEAQLNENKK 34 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777766666644
No 79
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=83.28 E-value=15 Score=41.19 Aligned_cols=130 Identities=12% Similarity=0.168 Sum_probs=71.5
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKF 187 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRF 187 (415)
..+.|+++|=.+|.++-..|.+. +|++-..|+++...++.++.. +..+.+--. ...+.+|++..+. .+|
T Consensus 338 ~l~~il~~~~~~R~~~~~rr~~~-----~l~k~~~r~~il~g~~~~~~~-id~~i~iir--~~~~~~~~~~~l~---~~f 406 (738)
T TIGR01061 338 GLLSYLDAYIKHCHEVIINRSKY-----ELEKASKRLEIVEGLIKAISI-IDEIIKLIR--SSEDKSDAKENLI---DNF 406 (738)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh-hhhHhHHHH--cCCCHHHHHHHHH---Hhc
Confidence 45788999888888877665544 444555556666555555552 222111000 0113334443332 222
Q ss_pred HHHH-HHHHHHHHHHHH-hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 188 LDLA-RQMEAFFLQKRF-LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 188 LD~A-RQLE~FFLQKrl-llSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
... .+.| +-|..++ .++.+.-+ -+++|+.+|+.||++.+.+|....+..+.|..-|.++..
T Consensus 407 -~~~~~q~~-~il~m~l~~lt~~e~~-kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~ 469 (738)
T TIGR01061 407 -KFTENQAE-AIVSLRLYRLTNTDIF-ELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKK 469 (738)
T ss_pred -CCCHHHHH-HHHhhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 000 1211 2232222 12222222 337788888889999999888888888888888888854
No 80
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=83.28 E-value=59 Score=34.63 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy10214 125 DLRHDLARKEELIKRHYD 142 (415)
Q Consensus 125 eLR~ElaRKnaLLrkhy~ 142 (415)
+++.|..++.+.|++.|.
T Consensus 311 ~~~~e~~~~~~~l~~~~~ 328 (582)
T PF09731_consen 311 ELREEFEREREELEEKYE 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.21 E-value=49 Score=32.56 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ 155 (415)
....+++++...++.|......++.+++-++..+
T Consensus 138 ~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~ 171 (423)
T TIGR01843 138 RKSTLRAQLELILAQIKQLEAELAGLQAQLQALR 171 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333
No 82
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=83.08 E-value=43 Score=31.78 Aligned_cols=110 Identities=18% Similarity=0.319 Sum_probs=58.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhh---------hHHHHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHY---------DKIAVW 147 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy---------~KIavW 147 (415)
-...+++..|-|.-+++|...|++ +.+ ..|.|.|-.-.++++....+++......-+.+.. +.|+.|
T Consensus 15 ~~~~~sls~~~~~~kqve~~~l~~-lkq---qqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~ 90 (165)
T PF09602_consen 15 KQWSQSLSLFASFMKQVEQQTLKK-LKQ---QQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEW 90 (165)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999998 332 3455555544555555555555544443322222 256666
Q ss_pred HHhHHhHHHHhhhhhcc-cc-cccccchhhHhHhHHHHHHHHHHHHH
Q psy10214 148 QNLLSDLQSCLQVLTKE-DE-VSTTLEKDEIKLEIDQATLKFLDLAR 192 (415)
Q Consensus 148 qnLlsdfQscLs~LSkq-E~-ser~~DqdEIKv~VEq~tnRFLD~AR 192 (415)
.+=...+-.-+..|... -. ++... +-++-.++.++..||+..+
T Consensus 91 t~k~~El~~~i~el~~~~~Ks~~~~l--~q~~~~~eEtv~~~ieqqk 135 (165)
T PF09602_consen 91 TDKLNELSAKIQELLLSPSKSSFSLL--SQISKQYEETVKQLIEQQK 135 (165)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHH--HHHHhhHHHHHHHHHHHHH
Confidence 54333333333322111 00 00011 1234456777778888765
No 83
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=82.97 E-value=30 Score=36.78 Aligned_cols=121 Identities=9% Similarity=0.053 Sum_probs=62.8
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKF 187 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRF 187 (415)
-.+.|++||=.+|.++-..|++-.-+.. ..+++...+....+...++-+.. + ...+.+++. ..+.+|
T Consensus 315 ~~~~Il~~f~~~R~~~~~kR~~~~l~k~-----~~r~~~l~~~~~fI~~vi~~~~~---~-~~~~~~~~~----~~l~~~ 381 (439)
T PHA02592 315 NAEDLIRDFVEIRKTYVQKRIQYEIKET-----EEAFDLALAKAEFIKRVIAGEIV---L-QGKTRSELT----EELSDN 381 (439)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh---c-cCCCHHHHH----HHHHHc
Confidence 6788999998888888877665443332 22333322222222222221111 1 001122222 122222
Q ss_pred -HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Q psy10214 188 -LDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDK--IAVWQNLLSDLQ 250 (415)
Q Consensus 188 -LD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eK--IeeWQsvL~dlq 250 (415)
+. ..-=.|.|..++.. +.++++..|+.|++.++.-|+.+.++ .+-|..-|+++.
T Consensus 382 ~~~--~~q~~~lL~m~L~~-------LT~~e~~kL~~e~~~l~~ei~~l~~~t~~~~w~~DL~~~~ 438 (439)
T PHA02592 382 KDF--GEYADKLVAMNIYS-------MTSDEREKLQKEAEELEKEHEYWKKTTAKKEYIKDLEELK 438 (439)
T ss_pred CCC--HHHHHHHHHhHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 10 11122444444333 66888888888888888877777665 555988888764
No 84
>KOG4552|consensus
Probab=82.97 E-value=40 Score=33.65 Aligned_cols=18 Identities=50% Similarity=0.445 Sum_probs=16.4
Q ss_pred HHHHHHHhhcChhHHHHh
Q psy10214 98 LQKRFLLSALKPELIVKE 115 (415)
Q Consensus 98 Lqkr~~ls~~kpe~i~ke 115 (415)
+++|++.++..-|.|+||
T Consensus 9 trerLL~~~dDlE~i~ke 26 (272)
T KOG4552|consen 9 TRERLLESADDLEHIVKE 26 (272)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 578999999999999999
No 85
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.95 E-value=37 Score=30.89 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=66.4
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH-HHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHH---H
Q psy10214 118 MVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ-SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLAR---Q 193 (415)
Q Consensus 118 ~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ-scLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~AR---Q 193 (415)
..+.++.++|-.......-|.+.-.++..++++-+.|. .-|..| +..+.....++-+-.. .
T Consensus 3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqL---------------kien~~l~~kIeERn~eL~~ 67 (177)
T PF13870_consen 3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQL---------------KIENQQLNEKIEERNKELLK 67 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 34567888888887777777777777777776655554 333333 2222222212211110 1
Q ss_pred HHHHHHHHHHhhhccCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 194 MEAFFLQKRFLLSALKPEL-IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 194 LE~FFLQKrlllSa~KPe~-vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
|-.-.-...+.++++|.+. .+..++..++.+|..++..+.+..+.+..-+..-..+
T Consensus 68 Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 68 LKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112223455555544 5577888888888888888888888877755554444
No 86
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=82.13 E-value=17 Score=32.53 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=55.5
Q ss_pred cchhHhhhhhhccccCCCCCCC-CCC-----------------CCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 44 LLQGPLAYLEKTTSNIGLPDGR-SLS-----------------PLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLS 105 (415)
Q Consensus 44 ~f~~~l~~~~~~~~~~~~~~~~-~~~-----------------~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls 105 (415)
+|-+|+.+|........++... .+. ....++.+..++....-+|..||++|. +.+
T Consensus 18 ~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~kakqIe~-------LId 90 (144)
T PF11221_consen 18 QFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIRKAKQIEY-------LID 90 (144)
T ss_dssp HHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 4667777777664444443333 222 235677777788777788999999984 455
Q ss_pred hcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 106 ALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 106 ~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
.+=....-.|.. .+.|.+|..|+...++.+++- +..=+++++.++.+|..+
T Consensus 91 sLPg~~~see~Q--~~~i~~L~~E~~~~~~el~~~---v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 91 SLPGIEVSEEEQ--LKRIKELEEENEEAEEELQEA---VKEAEELLKQVQELIREI 141 (144)
T ss_dssp HSTTSSS-HHHH--HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred hCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 554322222200 024555555555555444433 333345566777777665
No 87
>KOG0977|consensus
Probab=82.05 E-value=45 Score=36.74 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=42.3
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
+-.-+..|+++.+.|+.++|+-+.++...+..+-+++..|...++.+++.+..+
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~ 160 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTL 160 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHH
Confidence 444566677778888888888888888888888889999998888888766644
No 88
>KOG0963|consensus
Probab=81.70 E-value=96 Score=34.84 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=34.3
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHHhhc
Q psy10214 346 PSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTT 405 (415)
Q Consensus 346 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~le~~t 405 (415)
+-+--|++++.++.+|...-++|. +.++--+|=+.|+.-- +-+..+..++++|+-++
T Consensus 459 ~e~s~~~~~p~~~~~~~~s~~l~i-i~~qRdrfr~~n~~~e--~~~r~a~~~~~~l~~el 515 (629)
T KOG0963|consen 459 PESSIMGGGPSLPNGGVLSRILSV-ISSQRDRFRARNVELE--AQVRLANDKIGFLESEL 515 (629)
T ss_pred CcccccCCCCCccccccccccchh-hhcccchhhhhhhhHH--HHHhhccCchhHHhhhh
Confidence 445567788888877777443332 2346666766666432 22345677777777654
No 89
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.63 E-value=43 Score=30.77 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLAR 227 (415)
Q Consensus 215 KEEI~dLK~ELqR 227 (415)
..+|.+|+.+|+.
T Consensus 137 ~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 137 DTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666553
No 90
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.59 E-value=80 Score=33.86 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=19.0
Q ss_pred HHHhhhHHHHHHHhHHhHHHHhhhhhc
Q psy10214 137 IKRHYDKIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 137 Lrkhy~KIavWqnLlsdfQscLs~LSk 163 (415)
|...|.++...+.+.++++.++..|..
T Consensus 214 L~~e~~~L~n~e~i~~~~~~~~~~L~~ 240 (563)
T TIGR00634 214 LEAEQQRLSNLEKLRELSQNALAALRG 240 (563)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhC
Confidence 555555777777788888888777743
No 91
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=81.53 E-value=19 Score=29.18 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
++++..+..+|...+.-+....++++.|+..|..+
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777777777777777777777654
No 92
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=81.03 E-value=36 Score=39.31 Aligned_cols=124 Identities=13% Similarity=0.140 Sum_probs=69.6
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh---HHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD---KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~---KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
+....|+++|=.++.++-..|.|...+++.=|-|+. .|-+-+.....+. .+.+.+++...+.
T Consensus 328 ~~l~eiL~~~~~~r~~vl~rr~~~~l~k~~er~hi~~le~i~i~d~Ii~~Ir-------------~s~~~~~a~~~l~-- 392 (869)
T PRK12758 328 LGVSDILRRSTDHTVSLLKQELEIRLSELEEQWHFASLEKIFIEERIYKEIE-------------EAETWEAVIEAID-- 392 (869)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHH-------------cCCCHHHHHHHHH--
Confidence 456789999999999999999888888877777772 2222111111111 1123334433332
Q ss_pred HHHH----------HH--HHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 184 TLKF----------LD--LARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 184 tnRF----------LD--~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
.+| +. -+.++-.-=|+ ++|.+--+.+ .+|+.+|+.+|+..+.+|....+-|.+|-..|++-=
T Consensus 393 -~~~~p~~~~l~r~lte~qa~aIlemrL~---rlt~le~~k~-~~e~~~l~~~i~~~~~~L~~l~~~ii~el~~i~~ky 466 (869)
T PRK12758 393 -KGLEPFKKQFIREVTEDDIVRLTEIKIK---RISKFDSDKA-DELIARLEAEIAEVKHHLAHLTDYAIAYFTNLKKKY 466 (869)
T ss_pred -HhcccchhhhcCCCCHHHHHHHHHhHHH---HHhchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 00 01111111111 2222223333 778999999999999999887776777766666553
No 93
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=81.02 E-value=13 Score=38.72 Aligned_cols=111 Identities=15% Similarity=0.270 Sum_probs=56.6
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH---HHhhhhhcccccccccchhhHhHhHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ---SCLQVLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ---scLs~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
..++.|++||=.+|.++-..|.+.. |++-..+++.-..|+-++. -++..+... .+.++.+..+...
T Consensus 303 ~~~~eIL~~f~~~R~~~~~kR~~~~-----l~kl~~~l~il~gl~~~~~~idfIi~vI~~s------~~~~~~k~~L~~~ 371 (426)
T PF00521_consen 303 DSLKEILKEFYEFRLEYYQKRKQYL-----LEKLEERLHILEGLIKALNKIDFIIEVIRGS------IDKNKAKKDLIEE 371 (426)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHS------SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc------ccchHHHHHHHhh
Confidence 4678999999888888777665544 4444444444443333332 111111110 0122222222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 184 TLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 184 tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
|.. .-=.|.|. .+--.+.++++.+|..|++.+++-|+.+.+.+..
T Consensus 372 ----L~~--~q~~yLL~-------m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~ 416 (426)
T PF00521_consen 372 ----LSE--EQADYLLS-------MPLRRLTKEEIEKLQKEIKELEKEIEELEKILPK 416 (426)
T ss_dssp ----HCH--HHHHHHHT-------SBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----chH--HHHHHHHh-------chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 00112332 2223467888888888888887777777766655
No 94
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=80.38 E-value=32 Score=30.72 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=55.0
Q ss_pred HHHHhhh-HHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhh
Q psy10214 136 LIKRHYD-KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIV 214 (415)
Q Consensus 136 LLrkhy~-KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vv 214 (415)
.|++.-. .+-.|..+.+..+.++..|++...+ +.+|.+.-|+-.++..-.....+|.= +++++..-.-+-+.+.
T Consensus 7 ~l~k~~~~gaG~~a~~~ek~~klvDelVkkGel----n~eEak~~vddl~~q~k~~~~e~e~K-~~r~i~~ml~~~~~~r 81 (108)
T COG3937 7 GLRKLALIGAGLAAETAEKVQKLVDELVKKGEL----NAEEAKRFVDDLLRQAKEAQGELEEK-IPRKIEEMLSDLEVAR 81 (108)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHHhhhHHHh-hhHHHHHHHhhccccc
Confidence 3444333 5667888888888888888887665 67888777763332222211233332 2222222111222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
+.+.++|+.++++.++-+++..+++
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 82 QSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666665554
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.33 E-value=73 Score=35.56 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=9.1
Q ss_pred CCccCCCCCCCCCCCCCCC
Q psy10214 280 PGISAMGGPLPGMMGGMAP 298 (415)
Q Consensus 280 ~~~~~~~g~~~~~~~~map 298 (415)
++.++++||.+|--+++++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~ 399 (624)
T PRK14959 381 PSGSAAEGPASGGAATIPT 399 (624)
T ss_pred CCCCCCCCCCCCCCCCCCC
Confidence 3444556666643333433
No 96
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=80.17 E-value=65 Score=31.88 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhh
Q psy10214 90 ARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 90 Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs 159 (415)
+-.+-++|-..|-. .+|..--.| .+.-+.+|..-|...+..+.|...+...+.+....|...+.
T Consensus 36 ~d~~~~~~s~~~~v---~~~~~eF~E---mkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~ 99 (243)
T cd07666 36 GQTVKAVASSVRGV---KNRPEEFTE---MNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYT 99 (243)
T ss_pred HHHHHHHHHhcccc---CCCCHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555666654431 344333333 33366666666666665555444333233333333333333
No 97
>PF13166 AAA_13: AAA domain
Probab=79.95 E-value=93 Score=33.58 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy10214 122 DIVDLRHDL 130 (415)
Q Consensus 122 di~eLR~El 130 (415)
.+..++.++
T Consensus 330 ~~~~l~~~l 338 (712)
T PF13166_consen 330 AIEALKEEL 338 (712)
T ss_pred HHHHHHHHH
Confidence 333333333
No 98
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.91 E-value=78 Score=32.70 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=20.0
Q ss_pred CchhhHhHhHHHHHHHHHHHHHHHHHH
Q psy10214 70 LEKDEIKLEIDQATLKFLDLARQMEAF 96 (415)
Q Consensus 70 ~~k~E~~~~veq~~~kFid~Arq~E~f 96 (415)
.+.|+.|.-+|+...|+-.+=+..+++
T Consensus 23 ~ErDqyKlMAEqLqer~q~LKkk~~el 49 (319)
T PF09789_consen 23 SERDQYKLMAEQLQERYQALKKKYREL 49 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367888888888888887777766544
No 99
>KOG0979|consensus
Probab=79.89 E-value=1.1e+02 Score=36.13 Aligned_cols=171 Identities=20% Similarity=0.193 Sum_probs=87.0
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchh--HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTK--DIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~--di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
+=++++.+++....+-|+-+.-+=..=+-+-+.+...-.|.-+++.|..+. +-..+.-|+.|| |.++...|...+
T Consensus 703 ~l~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~---i~~~e~~i~~~~ 779 (1072)
T KOG0979|consen 703 DLDRQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERK---IEKLEDNISFLE 779 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHhHHHHHH
Confidence 446666666666666666655554444444455555555656666665443 222333344444 344444555555
Q ss_pred HhHHhHHHHhhhhhccc----------------ccccccchhhHh---HhHH---HHHHHHHHHH------HHHHHHHHH
Q psy10214 149 NLLSDLQSCLQVLTKED----------------EVSTTLEKDEIK---LEID---QATLKFLDLA------RQMEAFFLQ 200 (415)
Q Consensus 149 nLlsdfQscLs~LSkqE----------------~ser~~DqdEIK---v~VE---q~tnRFLD~A------RQLE~FFLQ 200 (415)
..++.++..+..+.+.. ++ ...+..|-. .... .+++.=||.+ +++=-++++
T Consensus 780 ~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s-~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~n 858 (1072)
T KOG0979|consen 780 AREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMS-PATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVN 858 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHhhhcccc-ccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 55555554444321110 11 111111100 0000 1122222322 222222332
Q ss_pred HHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy10214 201 KRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAV----WQNLLSDL 249 (415)
Q Consensus 201 KrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIee----WQsvL~dl 249 (415)
.- ++..=.+++.||..|...+.+..+=++.+++||.. |-.-|+++
T Consensus 859 e~----~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~ 907 (1072)
T KOG0979|consen 859 ED----AVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEM 907 (1072)
T ss_pred hH----HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 21 12222367889999999999999988888888765 88888887
No 100
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.39 E-value=1.1e+02 Score=33.98 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=20.9
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAF 96 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~f 96 (415)
+.+..-||.+.+|.+++++|.|.+
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~ 420 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKH 420 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999999999865
No 101
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=79.35 E-value=51 Score=36.96 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIA 240 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIe 240 (415)
+.+.-|.+|-.||+.|-+++++..|+..
T Consensus 127 L~~~vlg~l~~EIe~~~~~vfemeE~R~ 154 (683)
T PF08580_consen 127 LWNDVLGDLDNEIEECIRLVFEMEEKRH 154 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4466788888888888888888877653
No 102
>KOG3870|consensus
Probab=79.18 E-value=19 Score=38.40 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=50.2
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHH--HHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEEL--IKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATL 185 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaL--Lrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tn 185 (415)
+-+.++.+--.+-+++++||.||..-..+ |...-..+.+|.++++.+......--+ .-=--++-.+++-|.
T Consensus 55 ~g~~~~~d~k~ii~~l~~Lr~ei~~drpl~p~~~~~~D~d~wN~~L~~l~~~~~~wf~-------a~WL~aECYlYRrI~ 127 (434)
T KOG3870|consen 55 YGSEVVEDGKQIIKLLSKLRYEIQTDRPLQPLTGEEPDIDSWNEFLKKLPEAKRTWFK-------APWLHAECYLYRRIS 127 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCChhhhhhcc-------chhhhhhHHHHHHHH
Confidence 33333333333334566677666655433 233333799999999998764432111 001123556788888
Q ss_pred HHHHHHH---HHHHHHHHHHHhh
Q psy10214 186 KFLDLAR---QMEAFFLQKRFLL 205 (415)
Q Consensus 186 RFLD~AR---QLE~FFLQKrlll 205 (415)
.|...+. .-|.||=||+.-+
T Consensus 128 s~F~~s~~l~~yD~F~~~K~~~~ 150 (434)
T KOG3870|consen 128 SIFQRSSELKKYDYFFDQKESTL 150 (434)
T ss_pred HHHHhhhhhhhcChHHHHhHHHH
Confidence 8888774 4445666665433
No 103
>KOG1850|consensus
Probab=78.48 E-value=70 Score=33.67 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=11.5
Q ss_pred HHHHHHHhHHhHHHHhhhhhc
Q psy10214 143 KIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 143 KIavWqnLlsdfQscLs~LSk 163 (415)
++.+|..+-.+=+-....|++
T Consensus 166 ~kel~~ql~~aKlq~~~~l~a 186 (391)
T KOG1850|consen 166 KKELWEQLGKAKLQEIKLLTA 186 (391)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 677787665554433344433
No 104
>KOG4673|consensus
Probab=78.47 E-value=1.4e+02 Score=34.60 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccCCCCCCC
Q psy10214 215 KEDIVDLRHDLARKEELIKRH----YDKIAVWQNLLSDLQGWAKSPAHQG 260 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh----~eKIeeWQsvL~dlq~~~~spaq~~ 260 (415)
-.-+.+|+..|.+++..+.+- ...|++-+.-|+..+.-|.+-.|..
T Consensus 586 vqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 586 VQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334666666666666655443 2334445555555554444444443
No 105
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.42 E-value=1.2e+02 Score=34.47 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10214 86 FLDLARQMEAFFLQKRFLL 104 (415)
Q Consensus 86 Fid~Arq~E~fFLqkr~~l 104 (415)
.|.-+--.|+++..+...|
T Consensus 21 Ll~esa~~E~~~~~~i~~l 39 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILEL 39 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555677776665554
No 106
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.42 E-value=32 Score=35.29 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=27.7
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH 140 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh 140 (415)
.+-+.+-++.+...+.|..||.||..|++||+-.
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~y 130 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIY 130 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777888899999999999999999743
No 107
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=78.24 E-value=3.4 Score=35.40 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=25.6
Q ss_pred hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy10214 110 ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNL 150 (415)
Q Consensus 110 e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnL 150 (415)
+++...+|....++..+.+++.+.+..+.++..-++..+.+
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666677777777777776666665555444333
No 108
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=78.14 E-value=9.2 Score=32.91 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=39.2
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhch---hHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVT---KDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~---~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
++..+|+.+..+|.+|..+|...-- =.-.-..-+.|+.|||+.. -+-.+.|+.+.-.-..|.....+|..||
T Consensus 26 ~L~~~v~~v~~~f~~L~~~l~~l~~---~s~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~KL~HIK~~I~~yD 100 (101)
T PF07303_consen 26 ELHAEVDAVSRRFQELDSELKRLPP---GSQEYKRIAQILQEYNKKKKRDPNYQEKKKRCEYLHNKLSHIKQLIQDYD 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-T---TSHHHHHHH---HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5788999999999999998865322 0000111125567777762 3344444444444455555555555554
No 109
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=78.00 E-value=24 Score=35.03 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=56.2
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQ---KRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVW 147 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLq---kr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavW 147 (415)
+.++|++.++.++..|+|.+-.+-.=|+. ++ |...+-|.+ .|+.++|+.++|.|..|.-..++.-+++-..|
T Consensus 72 ~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~--Lk~V~tde~---k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~ 146 (230)
T PF03904_consen 72 NLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDE--LKDVDTDEL---KNIAQNEIKKVREENKSMLQEVKQSHEKYQKR 146 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999998887766643 33 333455533 34577799999999999888888888877777
Q ss_pred HHh
Q psy10214 148 QNL 150 (415)
Q Consensus 148 qnL 150 (415)
+.+
T Consensus 147 ~k~ 149 (230)
T PF03904_consen 147 QKS 149 (230)
T ss_pred HHH
Confidence 643
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.77 E-value=12 Score=41.71 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
|.++.++...|..||+=|...+.||++
T Consensus 628 krq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 628 KRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 111
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.74 E-value=29 Score=35.35 Aligned_cols=23 Identities=35% Similarity=0.777 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh 235 (415)
.++.++.+|+.+|..+++||++|
T Consensus 151 ~L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 151 SLREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Confidence 66889999999999999999665
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.63 E-value=1e+02 Score=33.60 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy10214 242 WQNLLSDL 249 (415)
Q Consensus 242 WQsvL~dl 249 (415)
|..+++.+
T Consensus 511 ~~~~f~~l 518 (650)
T TIGR03185 511 ITKSFKKL 518 (650)
T ss_pred HHHHHHHH
Confidence 34444444
No 113
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.50 E-value=55 Score=29.61 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=6.9
Q ss_pred HHHHHHHHhhcChhHH
Q psy10214 97 FLQKRFLLSALKPELI 112 (415)
Q Consensus 97 FLqkr~~ls~~kpe~i 112 (415)
|+.++...+..+++.+
T Consensus 59 ~~~~~~~~~~~~~~~~ 74 (191)
T PF04156_consen 59 CLLSKRPVQSVRPQQI 74 (191)
T ss_pred HHHHccccccchHHHH
Confidence 3333344444555444
No 114
>KOG3227|consensus
Probab=77.50 E-value=34 Score=33.89 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q psy10214 183 ATLKFLDLAR 192 (415)
Q Consensus 183 ~tnRFLD~AR 192 (415)
+|.|+||..+
T Consensus 24 ~IQk~LdEN~ 33 (231)
T KOG3227|consen 24 QIQKMLDENK 33 (231)
T ss_pred HHHHHHHhhh
Confidence 4567777543
No 115
>KOG0250|consensus
Probab=77.10 E-value=1.7e+02 Score=34.95 Aligned_cols=152 Identities=16% Similarity=0.259 Sum_probs=74.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh------------hhHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH------------YDKI 144 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh------------y~KI 144 (415)
|.+++++..+..++.-++.++-.- .+ ..| +|..+++++.+.+++|+.- ...-
T Consensus 207 T~L~qi~~~~~~~~~~~~~~~~~i--~~--------~~e------~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k 270 (1074)
T KOG0250|consen 207 TQLEQITESYSEIMESLDHAKELI--DL--------KEE------EIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAK 270 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HH--------HHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777765332 21 112 4555555555555444411 1122
Q ss_pred HHHH---HhHHhHHHHhhhhhcc-cccc--------cccchhhHh---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy10214 145 AVWQ---NLLSDLQSCLQVLTKE-DEVS--------TTLEKDEIK---LEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209 (415)
Q Consensus 145 avWq---nLlsdfQscLs~LSkq-E~se--------r~~DqdEIK---v~VEq~tnRFLD~ARQLE~FFLQKrlllSa~K 209 (415)
-+|. +...++..|...+.+- +... ......+++ +.++..++.+.+.....+.=+=..+-.+-
T Consensus 271 ~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~--- 347 (1074)
T KOG0250|consen 271 MAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLD--- 347 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH---
Confidence 2444 2233444444433221 1110 122334444 55666777777776555444433332221
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 210 Pe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
.++.+.++++.++.++++=+++.+++++...+.+.+++
T Consensus 348 ---~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 348 ---DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666666666555555554
No 116
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=77.07 E-value=1.3e+02 Score=33.80 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=42.2
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH
Q psy10214 75 IKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE 134 (415)
Q Consensus 75 ~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn 134 (415)
|++.+|..=+|.=+....-|.+|---+-.| ..+-|.|.+.|+++.+|+..||+|+-.+.
T Consensus 211 LraSLdfLP~Ri~~F~~ra~~~fp~a~e~L-~~r~~~L~~k~~~L~~e~~~LK~ELiedR 269 (683)
T PF08580_consen 211 LRASLDFLPMRIEEFQSRAESIFPSACEEL-EDRYERLEKKWKKLEKEAESLKKELIEDR 269 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 466666665554444444477776655444 35667899999999999999999998776
No 117
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=76.99 E-value=75 Score=30.89 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=64.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHH
Q psy10214 119 VTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFF 198 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FF 198 (415)
+..|+.+|+.-+.+.-+..+.-++=....-.-...|-..|..+.+.. ++. +..|++-. .++.+|...-+.++.|+
T Consensus 7 ~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~-f~~-~~dDe~~~---~~l~kFs~~l~El~~~~ 81 (215)
T cd07601 7 FEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQK-FEL-GRDDEILV---STLKQFSKVVDELSTMH 81 (215)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCC-CCCcHHHH---HHHHHHHHHHHHHHHHH
Confidence 44588888887777777777666655555555556666666665441 212 23455544 27788988888888875
Q ss_pred HHHHHhhh--c-cCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 199 LQKRFLLS--A-LKPELIVKEDIVDLRHDLARKEELIKRHYD 237 (415)
Q Consensus 199 LQKrlllS--a-~KPe~vvKEEI~dLK~ELqRKErLIqKh~e 237 (415)
--..-... - .+-+..+|++|.+.|..=.+-|+.-.+|..
T Consensus 82 ~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~ 123 (215)
T cd07601 82 STLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDG 123 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Confidence 42211110 0 112335677777766444333443333333
No 118
>KOG3648|consensus
Probab=76.94 E-value=0.83 Score=50.99 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=11.1
Q ss_pred CCCCCCcchhhHHh
Q psy10214 390 PGGLLQGPLAYLEK 403 (415)
Q Consensus 390 ~~~~~~~~la~le~ 403 (415)
|-+-+.++||.||=
T Consensus 127 P~~~~s~~msiLEC 140 (1179)
T KOG3648|consen 127 PKHTWSNNLAVLEC 140 (1179)
T ss_pred CCcccccchHHHHH
Confidence 67778888888874
No 119
>KOG3850|consensus
Probab=76.59 E-value=75 Score=34.13 Aligned_cols=124 Identities=26% Similarity=0.353 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCCCCCC------CCccchhHhhhhhhcc-ccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q psy10214 22 SAGPGGMGGPGNLGPGGMG------PGGLLQGPLAYLEKTT-SNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQME 94 (415)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~------~~~~f~~~l~~~~~~~-~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E 94 (415)
|+-||..+..+|-+||+.+ ++++|+.+|+-|..+- .-..+ +++. -.=||.++.++ +||--+=|=|
T Consensus 233 S~~~gSa~~~~n~~~g~~~~n~~~s~~~~l~aileeL~eIk~~q~~L--eesy-e~Lke~~krdy-----~fi~etLQEE 304 (455)
T KOG3850|consen 233 SSRPGSAADETNNVPGHGGANPYHSQGAALDAILEELREIKETQALL--EESY-ERLKEQIKRDY-----KFIAETLQEE 304 (455)
T ss_pred cCCCCccccccCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHH-----HHHHHHHHHH
Confidence 3444544455555555544 3456998888887651 11111 1110 00123333332 4555555544
Q ss_pred HHHHHHHHHHhhcChhHHHHh-hhhchhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 95 AFFLQKRFLLSALKPELIVKE-VNMVTKDIVDLRHDLARKEELIK-RHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 95 ~fFLqkr~~ls~~kpe~i~ke-~n~~~~di~eLR~ElaRKnaLLr-khy~KIavWqnLlsdfQscLs~L 161 (415)
.| -..|+. .++.+ .----.||..||.|++--++.+- -+|+|...+++-++++|+.++-|
T Consensus 305 Ry-R~erLE-------EqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKl 365 (455)
T KOG3850|consen 305 RY-RYERLE-------EQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKL 365 (455)
T ss_pred HH-HHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 333332 22221 11123489999999998886654 68899877777777777776643
No 120
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.82 E-value=1.8e+02 Score=34.63 Aligned_cols=48 Identities=15% Similarity=0.013 Sum_probs=24.4
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcc
Q psy10214 117 NMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkq 164 (415)
+....++.+++.+..++...+.++-.+..........+..++..|+..
T Consensus 329 ~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1311)
T TIGR00606 329 EKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATR 376 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333345555555555555555555445555555555555555555443
No 121
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=75.80 E-value=55 Score=36.91 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=27.0
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ 155 (415)
.....|+++|=.+|.++-..|.+..-+. -..++++...|..++.
T Consensus 350 ~~l~~il~~f~~~R~~~~~rr~~~~l~k-----~~~r~~~l~g~~~~~~ 393 (742)
T PRK05561 350 KGLKEILSEWLDHRREVVTRRSQFRLDK-----VEKRLHILEGLLIAFL 393 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 4557799998888888877766654443 3344444444444443
No 122
>KOG0962|consensus
Probab=75.20 E-value=1.8e+02 Score=35.33 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.++..+++.+-.+-+.++++...+|.+|.+.|..+..
T Consensus 919 ~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~ 955 (1294)
T KOG0962|consen 919 QSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYK 955 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555445688889999999999999998866
No 123
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.19 E-value=1.4e+02 Score=33.12 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKR 234 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqK 234 (415)
++++.++..|+..|++++.+
T Consensus 453 r~~~k~~~~e~~~Kee~~~q 472 (594)
T PF05667_consen 453 REEIKEIEEEIRQKEELYKQ 472 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444
No 124
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.12 E-value=2.1e+02 Score=35.14 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+..++.|...++.+...+....+++..-+..++.+
T Consensus 441 e~~LenF~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444444
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.01 E-value=96 Score=31.14 Aligned_cols=36 Identities=6% Similarity=0.346 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+++++.++..+|+.+.+.+.....+++.+...++++
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555556666666665555555
No 126
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=74.69 E-value=29 Score=33.52 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLLSALK-PELIVKEDIVDLRHDLARKEELIKRHYDKIA 240 (415)
Q Consensus 192 RQLE~FFLQKrlllSa~K-Pe~vvKEEI~dLK~ELqRKErLIqKh~eKIe 240 (415)
..||.+|-.+-..+++.. ..-.++.+++.++..|.+.|.=+.+.++-|+
T Consensus 89 D~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 89 DLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777776655555221 1114566666666666666666666666655
No 127
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.55 E-value=61 Score=28.65 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=25.5
Q ss_pred hhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHH
Q psy10214 46 QGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDL 89 (415)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~ 89 (415)
++|+.||...=...|+.......... ++....+..+|+=--++
T Consensus 1 ~~~~~yiN~~L~s~G~~~~~~~~~~~-~~~~~~~~~vin~i~~L 43 (151)
T PF11559_consen 1 RNAIEYINQQLLSRGYPSDGLLFDSA-EESEDNDVRVINCIYDL 43 (151)
T ss_pred ChHHHHHHHHHHHCCCCCCCccCccc-ccccccHHHHHHHHHHH
Confidence 36888888877777877666544444 44455555444443333
No 128
>KOG0994|consensus
Probab=74.43 E-value=52 Score=39.69 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=8.8
Q ss_pred CccchhHhhhhhhc
Q psy10214 42 GGLLQGPLAYLEKT 55 (415)
Q Consensus 42 ~~~f~~~l~~~~~~ 55 (415)
++||++.-+.||..
T Consensus 1474 ~~Li~~v~~Flt~~ 1487 (1758)
T KOG0994|consen 1474 RNLIQQVRDFLTQP 1487 (1758)
T ss_pred HHHHHHHHHHhcCC
Confidence 45666666666655
No 129
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.43 E-value=1.1e+02 Score=32.78 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=4.4
Q ss_pred CCCCCCCC
Q psy10214 367 PPFPSAGP 374 (415)
Q Consensus 367 ~~~~~~~~ 374 (415)
.++||.|.
T Consensus 299 l~~PV~G~ 306 (420)
T COG4942 299 LAWPVTGR 306 (420)
T ss_pred cCCCCCCc
Confidence 45566554
No 130
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=74.01 E-value=1.1e+02 Score=32.77 Aligned_cols=150 Identities=20% Similarity=0.230 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhhh---chh-HHHHHHHHHHHHHHH--------------HHHhhhHHHHHH-----
Q psy10214 92 QMEAFFLQKRFLLSALKPELIVKEVNM---VTK-DIVDLRHDLARKEEL--------------IKRHYDKIAVWQ----- 148 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe~i~ke~n~---~~~-di~eLR~ElaRKnaL--------------Lrkhy~KIavWq----- 148 (415)
-|.+||.++.-...-+.||.|..+... +.+ ++.+|+..|...-+| |.++|-|--.|+
T Consensus 16 Imr~F~~~~e~~~~~L~~edV~~~L~~~~~~~~~t~e~l~~~L~qLv~WgNL~~~qD~~r~~tieef~~kr~rYqlT~~g 95 (486)
T PF09660_consen 16 IMRAFYEAYERLRYWLRPEDVLARLRADGGFADYTIEQLQQDLDQLVEWGNLTAIQDTSRVRTIEEFKRKRFRYQLTPYG 95 (486)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhcCCcCCCCHHHHHHHHHHHHhcCCeeeeccccccCcHHHHhcccceeccCHHH
Confidence 467899888888888999999766433 222 255666555544321 112221111111
Q ss_pred ----------------------HhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10214 149 ----------------------NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLS 206 (415)
Q Consensus 149 ----------------------nLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllS 206 (415)
.+++++..-|..|..-....+..|.+++-.++......|-+.+...-.|.....-..+
T Consensus 96 ~~ieR~v~~le~~~~~~gsL~~~~l~~I~~~L~~L~~~~~~~~~~d~~~~~~~w~~L~~~f~~L~~na~df~~~L~~~~~ 175 (486)
T PF09660_consen 96 VEIERMVEELENLLGERGSLQRTLLERILERLRALAELAESPREGDAAEVYEWWRDLFEDFERLAQNAQDFYASLQSVKA 175 (486)
T ss_pred HHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2333333333322111111034577888888887778887777766666653222111
Q ss_pred --ccCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 207 --ALKPEL------IVKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 207 --a~KPe~------vvKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
..+++. .+=.++.++-.+|+++-..|+...+.|+.
T Consensus 176 ~~~~~~e~Fl~yKd~Li~YL~~Fv~~L~r~~~~I~~~l~~l~~ 218 (486)
T PF09660_consen 176 EEDMDTEAFLAYKDALIDYLRRFVQDLQRRAPRIAAALRELED 218 (486)
T ss_pred hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 122322 12346777778888888888888777775
No 131
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.87 E-value=67 Score=35.45 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH
Q psy10214 119 VTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ 155 (415)
|.+-+..+-++++++..-.++-|++|.....+.++.+
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~ 298 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIK 298 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555666666666666666666655555544444
No 132
>KOG2911|consensus
Probab=73.63 E-value=82 Score=33.98 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=44.6
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAV 146 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIav 146 (415)
|+-..|-+.++--+.++||+| ||-+++.-+-.+--+-+|| =-..+..+-.|+..++.|+.++...
T Consensus 230 ~~D~~V~~L~~~~~~L~kqie--~L~qeie~~~~~~r~~~k~------g~K~iA~~ylr~rk~~eK~~er~~~ 294 (439)
T KOG2911|consen 230 EIDGSVADLIQARAKLAKQIE--FLEQEIEKSKEKLRQALKE------GKKQIAITYLRARKLLEKDLERKVS 294 (439)
T ss_pred cchhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHhhHHHHHH
Confidence 444556666666778899998 6777787766666666666 3335556667777888888887643
No 133
>KOG4674|consensus
Probab=73.63 E-value=2.5e+02 Score=35.36 Aligned_cols=94 Identities=23% Similarity=0.283 Sum_probs=67.8
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHH--
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQ-- 148 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWq-- 148 (415)
+..+.+.+++-++...--+=--++.|=.+..-++..++- -=..+|++...+|..|+.|+..|+.+|..-..++...+
T Consensus 1265 ~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~-~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~ 1343 (1822)
T KOG4674|consen 1265 ELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKD-SDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEK 1343 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777666666777776666666654331 11345778888999999999999988888777666666
Q ss_pred --HhHHhHHHHhhhhhccc
Q psy10214 149 --NLLSDLQSCLQVLTKED 165 (415)
Q Consensus 149 --nLlsdfQscLs~LSkqE 165 (415)
+-+++|..|...++...
T Consensus 1344 ~k~qld~l~~e~~~lt~~~ 1362 (1822)
T KOG4674|consen 1344 IKKQLDELNNEKANLTKEL 1362 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 77888888888776653
No 134
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=73.56 E-value=76 Score=29.31 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=29.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHH
Q psy10214 75 IKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA 131 (415)
Q Consensus 75 ~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~Ela 131 (415)
....++++...+.+.+..+..-|-.-.-.+.... +..+++.-...+++.++..++.
T Consensus 14 ~~~~l~~~~~el~~M~~~v~~ml~~~~~al~~~d-~~~~~~i~~~e~~id~l~~~I~ 69 (236)
T PRK11115 14 FNAELESIRTQVLTMGGLVEQQLSDAITAMHNQD-AELAKRVIEGDHKVNMMEVAID 69 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHChHHHHHHHHHHH
Confidence 4555666666777777776666655444443333 2344443333445555555544
No 135
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=73.25 E-value=56 Score=27.61 Aligned_cols=114 Identities=19% Similarity=0.155 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10214 126 LRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLL 205 (415)
Q Consensus 126 LR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlll 205 (415)
+++.+.+.-...+..+......-.-..+|-.+|..|.......... .+-..+.+|-+..+.++.++-+....+
T Consensus 5 ~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-------~l~~~l~~~~~~~~~l~~~~~~~~~~~ 77 (194)
T cd07307 5 LEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNT-------DLGEALEKFGKIQKELEEFRDQLEQKL 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333334455555555555443220100 223455666666666666665444333
Q ss_pred hccCchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 206 SALKPELIVKEDIVDLR-HDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 206 Sa~KPe~vvKEEI~dLK-~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
. +.+ -+-+..+. ..+..-...++++.++...|.+.+..+..
T Consensus 78 ~----~~v-~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~ 119 (194)
T cd07307 78 E----NKV-IEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKK 119 (194)
T ss_pred H----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112 12233333 44555555555555555666666655544
No 136
>KOG0946|consensus
Probab=73.21 E-value=1.2e+02 Score=35.42 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 216 EDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 216 EEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
-+|..++.|=+.+-=++.+.++||...+..++||..
T Consensus 904 lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q 939 (970)
T KOG0946|consen 904 LKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQ 939 (970)
T ss_pred hcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 367888888888888899999999999999999964
No 137
>PRK11546 zraP zinc resistance protein; Provisional
Probab=73.02 E-value=27 Score=32.24 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=40.5
Q ss_pred hHhHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcChhHH-HHhhhhchhHHHHHHHHHHHHHHHHHHhhhH
Q psy10214 74 EIKLEIDQATLKFLDLARQM----EAFFLQKRFLLSALKPELI-VKEVNMVTKDIVDLRHDLARKEELIKRHYDK 143 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~----E~fFLqkr~~ls~~kpe~i-~ke~n~~~~di~eLR~ElaRKnaLLrkhy~K 143 (415)
|-...++...++|.+-...+ =+==..-+++++..+|+.- |+ .+++||.+||.+|..+...++..+.|
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~---aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKIN---AVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666543333 2222334667777888664 33 37778888888888777666655555
No 138
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=72.72 E-value=1.6e+02 Score=32.85 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=37.0
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
+-+++|-.++.+.++|=..---+|.||-+|- .++..| .--+++.-||+.|.|+..+|..
T Consensus 62 eI~~LK~~~q~s~d~y~kYKLKLeR~~~Kk~-ki~~sk---------~~ik~lt~lK~~L~~r~n~lN~ 120 (574)
T PF07462_consen 62 EIEELKKKIQVSLDHYGKYKLKLERLLKKKN-KISNSK---------EQIKKLTILKNKLERRQNLLNN 120 (574)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHHHHHhhcC
Confidence 4456677777778888777777777766553 222221 1123466788888888777654
No 139
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=72.62 E-value=2.2e+02 Score=34.12 Aligned_cols=54 Identities=7% Similarity=-0.041 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 194 MEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248 (415)
Q Consensus 194 LE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~d 248 (415)
.+.-+++... .|+.+-.++.+...+.++.++++.+..++...+.|..++....+
T Consensus 187 ~~~~~l~~~l-~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se 240 (1109)
T PRK10929 187 ALVDELELAQ-LSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAE 240 (1109)
T ss_pred HHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554443 34444444556666777777888888888777777765544333
No 140
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=72.59 E-value=95 Score=29.99 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQK 201 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQK 201 (415)
.+..+|.+|.|-.+..+...+-....-+-...|-..|..|.. .+.+.+| ..|.....+|...-+.++.|+-..
T Consensus 10 ~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~-----~~~~~~~--~~i~~~l~kF~~~l~El~~~~~~L 82 (215)
T cd07604 10 SLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGS-----KALSREE--EDLGAAFLKFSVFTKELAALFKNL 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc-----cccCccc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888887777777666433333334444444444432 1222222 244556678888888888776533
Q ss_pred HHhhhc---cCchhhhHHHHHHHH
Q psy10214 202 RFLLSA---LKPELIVKEDIVDLR 222 (415)
Q Consensus 202 rlllSa---~KPe~vvKEEI~dLK 222 (415)
+--++. ..-+..+|++|.+.+
T Consensus 83 ~~~~~~~i~~pL~~f~k~dL~~~k 106 (215)
T cd07604 83 MQNLNNIIMFPLDSLLKGDLKGSK 106 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 322211 123446687775544
No 141
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=72.37 E-value=19 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=22.2
Q ss_pred HHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy10214 111 LIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVW 147 (415)
Q Consensus 111 ~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavW 147 (415)
++...++.+..++..+...+++.+..|.++..-++..
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556677777777777666666665554333
No 142
>KOG0577|consensus
Probab=72.31 E-value=1.9e+02 Score=33.36 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=37.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 84 LKFLDLAR-QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 84 ~kFid~Ar-q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
.-|-+.|+ |+..| .-.|..+-..-|-.--|| -+..||.|-.||-++|-+.|+
T Consensus 749 kqfq~tck~qtrqy-k~~~~~~le~tpk~e~K~------l~k~lk~eq~rklaiLaeqye 801 (948)
T KOG0577|consen 749 KQFQQTCKTQTRQY-KAYRAQLLETTPKDEQKE------LLKRLKEEQTRKLAILAEQYE 801 (948)
T ss_pred HHHHhhhhHHHHHH-HHHHHhhhhcCChHHHHH------HHHHHHHHHHHHHHHHHHHhh
Confidence 45777776 45554 444555555666555566 778999999999999999999
No 143
>PRK03918 chromosome segregation protein; Provisional
Probab=71.72 E-value=1.7e+02 Score=32.44 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhccccccccc
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTL 171 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~ 171 (415)
++.++..+...+++.|.+...++..+..-.+.++..+..|...++.|+.|
T Consensus 392 ~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c 441 (880)
T PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVC 441 (880)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 33344434444444444444455555545555555555555445555533
No 144
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=71.56 E-value=76 Score=28.46 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=42.6
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 173 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
.++++..++-....++..+|++|..-= .+...-..+.--.+.|.+|..|++..++-++.-.++-+.|-+.++.+
T Consensus 64 ~~~~~~~~~elA~dIi~kakqIe~LId---sLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 64 PEEFEENIKELATDIIRKAKQIEYLID---SLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666777777764321 12221222332245788888888877777766666666666555554
No 145
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=71.34 E-value=36 Score=35.66 Aligned_cols=58 Identities=9% Similarity=0.160 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhhccCchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 190 LARQMEAFFLQKRFLLSALKPEL--IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 190 ~ARQLE~FFLQKrlllSa~KPe~--vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~ 247 (415)
.+..++.||++..+..+..-..= -++.|++.|+.-++........+..||.+.-.+|+
T Consensus 387 ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p~~~f~~l~E~~~LL~ 446 (494)
T PF04437_consen 387 IASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQYTPRPEAFFKRLREACKLLN 446 (494)
T ss_dssp HHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS--TTSGG-HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHcC
Confidence 34688889987665544222211 33678888888888877778889999999888887
No 146
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=71.27 E-value=76 Score=36.05 Aligned_cols=128 Identities=18% Similarity=0.282 Sum_probs=63.4
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH---HHHhhhhhcccccccccchhhHhHhHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL---QSCLQVLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf---QscLs~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
.....|+++|=.+|.++-..|.+..-+...-|.|.. ..+.-++ ...+..+.+ ..+.+|++..+.
T Consensus 337 ~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~~-----~g~~~~~~~~d~vi~~ir~------~~~~~~~~~~L~-- 403 (800)
T TIGR01063 337 LNLKELLEAFVEHRKDVITRRTIFELRKAEERAHIL-----EGLLIALDNIDEVIALIRA------SQNTEEAKTRLV-- 403 (800)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHh------CCCHHHHHHHHH--
Confidence 356889999999988888877765544444343333 2222222 112222211 112334433332
Q ss_pred HHHHHHHH-HHHHHHHHHHHHh-hhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 184 TLKFLDLA-RQMEAFFLQKRFL-LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 184 tnRFLD~A-RQLE~FFLQKrll-lSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.+| ... .+.| +.|..++. +|.+.-+ -+++|+.+|+.|+++.+.+|....+..+.=.+-|.++..
T Consensus 404 -~~~-~~~~~qa~-~il~m~L~~Lt~~e~~-kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikk 469 (800)
T TIGR01063 404 -ERF-SLSEIQAQ-AILDMRLQRLTGLERE-KLQEEYKELLELIADLEDILASEERVLEIIREELEEIKE 469 (800)
T ss_pred -Hhc-CCCHHHHH-HHHHhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 222 000 1111 22322221 1111111 336777788888888887777776666666666666543
No 147
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=71.07 E-value=1.1e+02 Score=29.99 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=8.7
Q ss_pred hhHHHHhhhhchhHHH
Q psy10214 109 PELIVKEVNMVTKDIV 124 (415)
Q Consensus 109 pe~i~ke~n~~~~di~ 124 (415)
.-.+||+..+|+.+.-
T Consensus 18 v~~~iK~~~pf~t~lF 33 (205)
T PF12238_consen 18 VLDLIKENPPFKTSLF 33 (205)
T ss_pred HHHHHccCCCCchhhh
Confidence 3445666666655544
No 148
>PRK03918 chromosome segregation protein; Provisional
Probab=71.02 E-value=1.7e+02 Score=32.33 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=9.1
Q ss_pred HHhhhhchhHHHHHHHHHHHHHH
Q psy10214 113 VKEVNMVTKDIVDLRHDLARKEE 135 (415)
Q Consensus 113 ~ke~n~~~~di~eLR~ElaRKna 135 (415)
...++.+..++.++++++...++
T Consensus 192 ~~~l~~l~~~~~~l~~ei~~l~~ 214 (880)
T PRK03918 192 EELIKEKEKELEEVLREINEISS 214 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444333
No 149
>KOG0249|consensus
Probab=70.87 E-value=43 Score=38.43 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
++-+++|.++|++|++.++-.-+|..+-+
T Consensus 90 ~d~ndklE~~Lankda~lrq~eekn~slq 118 (916)
T KOG0249|consen 90 HDLNDKLENELANKDADLRQNEEKNRSLQ 118 (916)
T ss_pred ccchHHHHHHHhCcchhhchhHHhhhhhh
Confidence 34567899999999988887777665554
No 150
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=70.56 E-value=59 Score=30.36 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=54.3
Q ss_pred HHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q psy10214 148 QNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLAR 227 (415)
Q Consensus 148 qnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqR 227 (415)
+++|+.|+..+..++.+= .++.|...|+.+|-=|..+|..-.-+++.-...+ ..++|.+|.+...|+..
T Consensus 45 q~mL~~FkeelE~iasrW-------~~dak~KAEkiLnaaLaaSKeam~~~m~e~~~~~----~~~i~~~i~~~~~e~~~ 113 (144)
T PRK13895 45 QEMLDQFKEELESIASRW-------GDDAKEKAERILNAALAASKEAMAKGMQEGAKAA----AEAVRREISASLAELAA 113 (144)
T ss_pred HHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 467888888888876542 3466888899999999999988888886655443 34567788877777766
Q ss_pred HHHHHHH
Q psy10214 228 KEELIKR 234 (415)
Q Consensus 228 KErLIqK 234 (415)
.-+..++
T Consensus 114 ~~~~tr~ 120 (144)
T PRK13895 114 PVREARR 120 (144)
T ss_pred HHHHHHH
Confidence 5554444
No 151
>KOG0996|consensus
Probab=70.37 E-value=2.6e+02 Score=34.03 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=24.7
Q ss_pred HHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhh
Q psy10214 113 VKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 113 ~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs 159 (415)
-||.-+.+.++.++++....-+..|.++...|..-..++...+..|.
T Consensus 418 eke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 418 EKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555666666665555555555554444
No 152
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.19 E-value=1.3e+02 Score=30.51 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHH---HHH--HHHHHHHHHHHhhcChhHHHHhhhh---chhHHHHHHHHHHHHHHHHHHhhhHH-----H
Q psy10214 79 IDQATLKFLDLA---RQM--EAFFLQKRFLLSALKPELIVKEVNM---VTKDIVDLRHDLARKEELIKRHYDKI-----A 145 (415)
Q Consensus 79 veq~~~kFid~A---rq~--E~fFLqkr~~ls~~kpe~i~ke~n~---~~~di~eLR~ElaRKnaLLrkhy~KI-----a 145 (415)
|+..+.|+.|+- |.+ +..-++|++......-+.+..|.|+ +++.+..|=.|++|-|..|+.++.+. .
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~ 103 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE 103 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555553 222 3355666666666666666666554 35566777889999999999888743 4
Q ss_pred HHHHhHHhHHHHhhhhhcc
Q psy10214 146 VWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 146 vWqnLlsdfQscLs~LSkq 164 (415)
.+.++.+.||..|..|++.
T Consensus 104 kR~el~~kFq~~L~dIq~~ 122 (309)
T PF09728_consen 104 KRKELSEKFQATLKDIQAQ 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667788888888877554
No 153
>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair]
Probab=70.17 E-value=85 Score=30.42 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=57.0
Q ss_pred hHhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHhhcChh-HHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 76 KLEIDQATLKFLDLARQMEA----------------FFLQKRFLLSALKPE-LIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 76 ~~~veq~~~kFid~Arq~E~----------------fFLqkr~~ls~~kpe-~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
.+.|-+.|.+||..+++|.. +++|-|++| .++| ..-.+ ++.+.+.++-++-...+
T Consensus 31 dI~i~~lt~qyL~~i~~~~~~~l~~a~~~LvmAa~Ll~~KS~~Ll--p~~~~~~e~~------~~e~~~~~L~~rl~ey~ 102 (248)
T COG1354 31 DIPIVELTDQYLAYIEELKKLDLEVAADYLVMAAILLRIKSRMLL--PKEEEEAEDE------ELEEPRDELVARLEEYE 102 (248)
T ss_pred hCcHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhC--CCCccccccc------chhhhHHHHHHHHHHHH
Confidence 35678889999999888843 334445555 3332 22223 67789999999999999
Q ss_pred HhhhHHHHHHHhHHhHHHHhhh
Q psy10214 139 RHYDKIAVWQNLLSDLQSCLQV 160 (415)
Q Consensus 139 khy~KIavWqnLlsdfQscLs~ 160 (415)
+.+.....+.+.......+++.
T Consensus 103 ~~k~~~~~l~~~~~~~~~~~~k 124 (248)
T COG1354 103 RYKEAAELLAELEEERRDVFSK 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988888776
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.17 E-value=60 Score=31.83 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q psy10214 215 KEDIVDLRHD 224 (415)
Q Consensus 215 KEEI~dLK~E 224 (415)
|++|++++.|
T Consensus 94 k~~in~~R~e 103 (230)
T PF10146_consen 94 KDEINELRKE 103 (230)
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 155
>KOG0543|consensus
Probab=69.94 E-value=74 Score=33.91 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhcChhHHHHhhhhchh-HHHHHHHHHHHHHHH---HHHhhhHHHHHHHhHHhHHHHhhhhhcccccccc
Q psy10214 95 AFFLQKRFLLSALKPELIVKEVNMVTK-DIVDLRHDLARKEEL---IKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTT 170 (415)
Q Consensus 95 ~fFLqkr~~ls~~kpe~i~ke~n~~~~-di~eLR~ElaRKnaL---Lrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~ 170 (415)
.||-+-+|.++..+=|.+++..|..+. +..+-++-.+=|... |---|.|+..|. +++++|-..|.-+.+.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~---~Ai~~c~kvLe~~~~N--- 290 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK---EAIESCNKVLELDPNN--- 290 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH---HHHHHHHHHHhcCCCc---
Confidence 578888999999998888887663221 223333333333322 223345887775 8999999998554322
Q ss_pred cchhhHhHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy10214 171 LEKDEIKLEIDQATLKFLDLAR-QMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDK-IAVWQNLLSD 248 (415)
Q Consensus 171 ~DqdEIKv~VEq~tnRFLD~AR-QLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eK-IeeWQsvL~d 248 (415)
+|+- +|.=.-.+.... ++-..++++.+++ ..+..+..+||.++.+-++++.+| -+-|++++.-
T Consensus 291 -----~KAL-yRrG~A~l~~~e~~~A~~df~ka~k~---------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 -----VKAL-YRRGQALLALGEYDLARDDFQKALKL---------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred -----hhHH-HHHHHHHHhhccHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1111 111111111110 1112344454433 445577778888888888888888 6679999998
Q ss_pred Hh
Q psy10214 249 LQ 250 (415)
Q Consensus 249 lq 250 (415)
+-
T Consensus 356 ~~ 357 (397)
T KOG0543|consen 356 LA 357 (397)
T ss_pred cc
Confidence 84
No 156
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.92 E-value=1.1e+02 Score=29.63 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHh
Q psy10214 82 ATLKFLDLARQMEAFFLQKRFLLSALKPELIVKE 115 (415)
Q Consensus 82 ~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke 115 (415)
++.+|.|..|.+. -..+.+.....+.|++-
T Consensus 64 al~~f~~~l~e~~----~~ll~~~~~~~~~~~~p 93 (214)
T cd07609 64 ALKRFGDGLKDFW----GGVLSALKGNDSLILDP 93 (214)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhcchHHHHHH
Confidence 7789999999887 33344433444444444
No 157
>smart00150 SPEC Spectrin repeats.
Probab=69.71 E-value=47 Score=25.28 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy10214 85 KFLDLARQMEAFFLQKRFLLS 105 (415)
Q Consensus 85 kFid~Arq~E~fFLqkr~~ls 105 (415)
+|.+.++.+++|.-.+.-.++
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~ 22 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLA 22 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 688889999999887764443
No 158
>KOG4360|consensus
Probab=69.70 E-value=71 Score=35.37 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=20.4
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 116 VNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
.|.-.+.+..|+.|+.||++||+-
T Consensus 106 v~~~~d~vvql~hels~k~ellr~ 129 (596)
T KOG4360|consen 106 VDAPWDRVVQLGHELSRKDELLRG 129 (596)
T ss_pred hcchHHHHHHhhhhhhhhhhhhhe
Confidence 455577899999999999999974
No 159
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.51 E-value=1e+02 Score=32.53 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ 155 (415)
+.++.+|+++|.+.++.|.+...+++..+..+.-|.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666666666666666666655544444333333
No 160
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=69.44 E-value=1.7e+02 Score=31.64 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+++..+++..|+....-.....++|..|+..|..+..
T Consensus 396 e~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 396 EKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555556666667777777776654
No 161
>KOG4098|consensus
Probab=69.07 E-value=40 Score=31.27 Aligned_cols=51 Identities=14% Similarity=0.320 Sum_probs=40.5
Q ss_pred hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 110 ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 110 e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
+.|+.-||-.|.+..++-.++.+.+.-+++|..=|...+++.. =+.||+.+
T Consensus 18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp-~RKCfRmI 68 (140)
T KOG4098|consen 18 QAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDP-TRKCFRMI 68 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCh-hhHHHHHh
Confidence 4566678889999999999999999999999887765554433 36899876
No 162
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=69.01 E-value=1.6 Score=45.84 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=7.7
Q ss_pred hhhchhHHHHHHHHHHH
Q psy10214 116 VNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaR 132 (415)
++.|++|+...|.|..+
T Consensus 78 f~RfTEdeeRKr~E~QK 94 (468)
T PF11498_consen 78 FTRFTEDEERKRAEMQK 94 (468)
T ss_dssp HHHHHHHHHHHHH----
T ss_pred HHhhchHHHHHHHHHHh
Confidence 55566666555555543
No 163
>KOG2199|consensus
Probab=68.81 E-value=49 Score=35.63 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=10.5
Q ss_pred hhchhHHHHHHHHHHH
Q psy10214 117 NMVTKDIVDLRHDLAR 132 (415)
Q Consensus 117 n~~~~di~eLR~ElaR 132 (415)
|-|+.++.+++.|-.+
T Consensus 265 nfVT~~le~~~~ee~~ 280 (462)
T KOG2199|consen 265 NFVTADLEEPKIEEQE 280 (462)
T ss_pred hhhhhhhcccchhhhh
Confidence 5666677666666655
No 164
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=68.78 E-value=69 Score=30.45 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=48.6
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLK 186 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnR 186 (415)
..|..|++- -.-+|+.+|..+|.--.. |.+......-|.+++.--...+..+.+.+...+.. ...+...|..+|++
T Consensus 63 ~eP~~i~~g--L~~~dleeL~~dIk~y~~-Le~~~~n~~fW~~~~~v~~del~~~~~~~~~~~~~-~~~ih~sV~~dI~~ 138 (191)
T PF10312_consen 63 HEPYTIFEG--LSLEDLEELLEDIKVYLE-LERDNKNREFWEAMLVVCEDELAKLRKKEPEGRAV-RSGIHSSVAADIQK 138 (191)
T ss_pred cCHHHHHhh--CCHHHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHHHHHhhcccccccch-hhcccHHHHHHHHH
Confidence 556555543 345688888888876665 44555478899888777777777765543332222 34556667766655
Q ss_pred HHH
Q psy10214 187 FLD 189 (415)
Q Consensus 187 FLD 189 (415)
++.
T Consensus 139 il~ 141 (191)
T PF10312_consen 139 ILS 141 (191)
T ss_pred HHc
Confidence 543
No 165
>KOG4403|consensus
Probab=68.61 E-value=1.8e+02 Score=31.92 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10214 228 KEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 228 KErLIqKh~eKIeeWQsvL~ 247 (415)
.+++.....+++..|+.+-.
T Consensus 406 l~evtt~lrErl~RWqQIE~ 425 (575)
T KOG4403|consen 406 LSEVTTLLRERLHRWQQIES 425 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888988643
No 166
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=68.53 E-value=27 Score=27.86 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=44.4
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH 140 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh 140 (415)
.+++|+.-.+....+..++-+++.+....-+.++++.+++ .+ .|..+.+|+.+....+++.
T Consensus 46 Q~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D---~~------~i~a~~~~~~~~~~~l~~~ 106 (125)
T PF13801_consen 46 QQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPD---EA------AIEALLEEIREAQAELRQE 106 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS----HH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---HH------HHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888899999999888888888777763 33 4555666666665554443
No 167
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=68.52 E-value=47 Score=28.18 Aligned_cols=26 Identities=12% Similarity=0.400 Sum_probs=18.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 177 KLEIDQATLKFLDLARQMEAFFLQKR 202 (415)
Q Consensus 177 Kv~VEq~tnRFLD~ARQLE~FFLQKr 202 (415)
..-|...+.+|++...+|++-+|+.|
T Consensus 97 e~Av~~~~~~~~~~f~~~~d~ylreR 122 (123)
T PF05524_consen 97 EYAVQEVIEEYIEQFEAMDDPYLRER 122 (123)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhh
Confidence 44466777888888888888777655
No 168
>KOG4643|consensus
Probab=68.28 E-value=59 Score=38.51 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhccCch-hhhHHHHHHHHHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLLSALKPE-LIVKEDIVDLRHDLARKE 229 (415)
Q Consensus 192 RQLE~FFLQKrlllSa~KPe-~vvKEEI~dLK~ELqRKE 229 (415)
|-||.-|+..|+. .+|.. .|+-++...|+.+|++..
T Consensus 255 rlmDs~fykdRve--elkedN~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVE--ELKEDNRVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred hhhhhHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4677777766542 23322 355556666666665544
No 169
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=68.26 E-value=1.2e+02 Score=33.91 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+++|+.+|+.+|+..+.+|....+=+..|-..|++-
T Consensus 409 ~~~e~~~l~~~i~~~~~~L~~~~~~~~~el~~l~~k 444 (635)
T PRK09631 409 NQKEIRILNKELKSVEKNLKSIKGYAINFIDKLLAK 444 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888555455454444433
No 170
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.25 E-value=1e+02 Score=28.64 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy10214 185 LKFLDLARQMEAFFL 199 (415)
Q Consensus 185 nRFLD~ARQLE~FFL 199 (415)
..|++.-|.+..|.-
T Consensus 86 ~~f~~~Lkd~~~y~~ 100 (185)
T cd07628 86 ENYLTSLKDLLHYIL 100 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456555555555544
No 171
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.21 E-value=86 Score=31.01 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=42.8
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 172 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNL 245 (415)
Q Consensus 172 DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsv 245 (415)
+...|=.-|-...+||=.-...||.=.- -.+++|..|+.|++....==-|.||||+.+++-
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr-------------~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELR-------------KQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445555566777888777777776443 225677888888877776667999999988764
No 172
>KOG0995|consensus
Probab=68.20 E-value=2.1e+02 Score=32.10 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=55.1
Q ss_pred HHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHH
Q psy10214 112 IVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI-AVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDL 190 (415)
Q Consensus 112 i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI-avWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ 190 (415)
.++||+. +|.+.=++...+..-|++|..-. +...++-+-+-.+...|++.+..+-. ++-..+..-.++=..
T Consensus 422 ~l~el~~---ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~-----~k~e~eee~~k~~~E 493 (581)
T KOG0995|consen 422 LLKELLD---EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYEL-----KKEEAEEEWKKCRKE 493 (581)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 3455444 66666666666667777777722 22222222222222233322211111 111112111223334
Q ss_pred HHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 191 ARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 191 ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
+..||.-.++..+.+ .....++ .+.+.....++++--..+..+..||
T Consensus 494 ~e~le~~l~~l~l~~-~~~m~~a-~~~v~s~e~el~~~~~~~~eer~ki 540 (581)
T KOG0995|consen 494 IEKLEEELLNLKLVL-NTSMKEA-EELVKSIELELDRMVATGEEERQKI 540 (581)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666543322 1222222 5567777777777666666666666
No 173
>KOG0976|consensus
Probab=68.17 E-value=2.6e+02 Score=33.16 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----HHHHHHHhHHhHHHHhh
Q psy10214 122 DIVDLRHDLARKEELIKRHYD----KIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~----KIavWqnLlsdfQscLs 159 (415)
+..++..||+-|..-|.+..+ |-.+..++.+.|+..++
T Consensus 149 rlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~ 190 (1265)
T KOG0976|consen 149 RLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLA 190 (1265)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Confidence 333444444444433333333 33444455666665554
No 174
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=68.06 E-value=96 Score=28.22 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 220 DLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 220 dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+++..|.+-.+.+....+.+..+-.-++|+
T Consensus 103 el~~~l~~~~~~~~~~~~~~~~~~~~vsdi 132 (204)
T PF04740_consen 103 ELKKKLNQLKEQIEDLQDEINSILSSVSDI 132 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence 455555555555555555554444444444
No 175
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=67.92 E-value=1.7e+02 Score=31.02 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHH--HhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 88 DLARQMEAFFLQKRFL--LSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 88 d~Arq~E~fFLqkr~~--ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
+-=..+++.|-+---. |-.+--+.|++-|+++......++..|.+-++.|..-+.
T Consensus 44 ~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~ 100 (473)
T PF14643_consen 44 ESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELEK 100 (473)
T ss_pred hhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555432211 223334555556666666666666666666544444333
No 176
>KOG0579|consensus
Probab=67.86 E-value=2.5e+02 Score=32.87 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhh
Q psy10214 192 RQMEAFFLQKRFLL 205 (415)
Q Consensus 192 RQLE~FFLQKrlll 205 (415)
|.||..-||.+|.+
T Consensus 974 WElEe~qlqEkhqL 987 (1187)
T KOG0579|consen 974 WELEEKQLQEKHQL 987 (1187)
T ss_pred hHhHHHHHHHHHHH
Confidence 55555555544433
No 177
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=67.79 E-value=1.7e+02 Score=31.09 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhHHhHHHHhhhhh
Q psy10214 121 KDIVDLRHDLARKEELIK-RHYDKIAVWQNLLSDLQSCLQVLT 162 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLr-khy~KIavWqnLlsdfQscLs~LS 162 (415)
.||..||.||+--++.+. ..|+|+....+.++.||++++-|=
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 588899999988886555 677898888888999998888663
No 178
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.44 E-value=2.1e+02 Score=31.83 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
++..|+.+|...+..++....+..--..-|.++
T Consensus 284 e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 284 ENEALKEQLRSAQEQLQASQQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333334333
No 179
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=67.31 E-value=1.8e+02 Score=31.25 Aligned_cols=47 Identities=9% Similarity=0.090 Sum_probs=24.3
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhc
Q psy10214 117 NMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSk 163 (415)
+.|..|+..+..|+....+.-.+-..|+..-+..++.|...+..|+.
T Consensus 38 ~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~i 84 (508)
T PF04129_consen 38 SNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVI 84 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 33444555555555555554444445555555555555555555433
No 180
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.16 E-value=1.2e+02 Score=28.91 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
.|..++.||.++.+.+++|+.-- + .+-+.+|.+ -+...+++-=|+=...||.|+|+
T Consensus 58 ~i~~~l~kF~~~l~el~~~~~~L---~--~q~~~~i~~------pL~~F~k~dL~~vKE~kk~Fdk~ 113 (200)
T cd07603 58 LVQNCLNKFIQALQEMNNFHTIL---L--DQAQRTVST------QLQNFVKEDIKKVKESKKHFEKI 113 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHHH
Confidence 56799999999999999996532 2 233334444 33333333333334566777775
No 181
>PF13166 AAA_13: AAA domain
Probab=66.97 E-value=1.9e+02 Score=31.26 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy10214 121 KDIVDLRHDLARKEELI 137 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLL 137 (415)
.+..+++.++...++.|
T Consensus 322 ~~~~~~~~~~~~l~~~l 338 (712)
T PF13166_consen 322 EDKEELKSAIEALKEEL 338 (712)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555544443
No 182
>KOG0933|consensus
Probab=66.97 E-value=1.4e+02 Score=35.68 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=12.3
Q ss_pred hhhHhHhHHHHHHHH-----HHHHHHH
Q psy10214 72 KDEIKLEIDQATLKF-----LDLARQM 93 (415)
Q Consensus 72 k~E~~~~veq~~~kF-----id~Arq~ 93 (415)
.||++-.++.+.=.+ .|+||.+
T Consensus 611 d~~l~~amefvFG~tlVc~~~d~AKkV 637 (1174)
T KOG0933|consen 611 DDELKKAMEFVFGSTLVCDSLDVAKKV 637 (1174)
T ss_pred CHHHHHHHHHHhCceEEecCHHHHHHh
Confidence 355666565554333 4777766
No 183
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.95 E-value=49 Score=33.52 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
..+.|...+..++++++.-+....++|.+|+.-|.+++
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778889999999999999999999999999999886
No 184
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=66.70 E-value=91 Score=27.44 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHH
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaR 132 (415)
+++++...+..++..++..|-.-.-.+....+ ..++++....+++.++..++.+
T Consensus 6 ~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d~-~~~~~i~~~e~~id~l~~~i~~ 59 (212)
T TIGR02135 6 ELKELREELLEMGGLVEEQLEDAVRALTEKDR-ELARKVIEDDDQINALEVKIEE 59 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHChHHHHHHHHHHHH
Confidence 45666666777777777777665555544443 3455555555666666666644
No 185
>KOG0979|consensus
Probab=66.66 E-value=1.9e+02 Score=34.53 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+.+.+..|++++....+...+-+++-..+|++.
T Consensus 756 ~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a 788 (1072)
T KOG0979|consen 756 RSNKNNIEAERKIEKLEDNISFLEAREDLLKTA 788 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444444555555555555555555444444444
No 186
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=66.50 E-value=31 Score=30.54 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=39.9
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHhHHhHHHHhhhhhcc
Q psy10214 117 NMVTKDIVDLRHDLARKEELIKRHYDK-IAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLrkhy~K-IavWqnLlsdfQscLs~LSkq 164 (415)
+.+.+++.+.|.|+.+-..-|..|+.+ ..+..+|.++.+.+...|++.
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~ 76 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKG 76 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344559999999999999999999996 778888888888888877553
No 187
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.30 E-value=1.2e+02 Score=28.80 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhccc
Q psy10214 93 MEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKED 165 (415)
Q Consensus 93 ~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE 165 (415)
++.||.++|--+..+ ...||.-...-+.+++.+.+-...+.+ |=.++..|+..|
T Consensus 2 ~D~~F~~~k~yl~~l---------------~~~lk~~~~~~~~lv~~rk~la~~~~~----fs~al~~L~~~E 55 (198)
T cd07630 2 VDEFFQKERDMNTKL---------------SANMKEAAEKFLKIVNTEQRLANALGH----LSSSLQLCVGLD 55 (198)
T ss_pred ccHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccc
Confidence 467898888666332 225666667777888888887755554 444555554444
No 188
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=66.26 E-value=1.7e+02 Score=30.32 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=39.1
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhh
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHY 141 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy 141 (415)
+.|..-+.++.+..-.-+..++.-|-++.......|-++=..- .++.+||.+..+++...+..|+.-.
T Consensus 225 ~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql-~~~~~ei~~~e~~i~~L~~ai~~k~ 292 (384)
T PF03148_consen 225 EDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQL-KKTLQEIAEMEKNIEDLEKAIRDKE 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777788888888888777665555443222 2344455555555555444444333
No 189
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.21 E-value=1.3e+02 Score=29.04 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 180 IDQATLKFLDLARQMEAFFL----QKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 180 VEq~tnRFLD~ARQLE~FFL----QKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
+..++.+|.+.-+.+++|+- |..+.+. .+-+..+|++|...|..=.+-|+.-.++...+
T Consensus 59 i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~-~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al 121 (200)
T cd07639 59 MAECLEKFSDGLNHILDSHAELLEATQFSFK-QQLQLLVKEDLRGFRDARKEFERGAESLEAAL 121 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHhhhHhhcchhHHHHH
Confidence 67788899999999988764 2111110 11233667887766655444444444444333
No 190
>KOG0976|consensus
Probab=65.95 E-value=2.8e+02 Score=32.84 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=30.8
Q ss_pred chhhHhHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQ-----MEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq-----~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
|+-|-++++|-++.+.-++-+. =|-|-.-+-+--+..+--..-+|+|-...|++++++.+.+|-+.+++
T Consensus 135 d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 135 DKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666655443222 22232222222222222223334444455566666665555444433
No 191
>KOG0247|consensus
Probab=65.74 E-value=1.2e+02 Score=35.02 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Q psy10214 124 VDLRHDLARKEELIKRHYDKIAV 146 (415)
Q Consensus 124 ~eLR~ElaRKnaLLrkhy~KIav 146 (415)
.-|+.++++|++.|...++.++.
T Consensus 537 ~~~~~~l~~kke~i~q~re~~~~ 559 (809)
T KOG0247|consen 537 QMLSSQLNDKKEQIEQLRDEIER 559 (809)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 34555666666666666654433
No 192
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=65.63 E-value=38 Score=30.26 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=44.1
Q ss_pred hhhHhHhHHHHHHHHHHHHHHH------HHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 173 KDEIKLEIDQATLKFLDLARQM------EAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLL 246 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~ARQL------E~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL 246 (415)
..|+...+.+.+.+|-++...+ -.|+||.|+.-+ -..+.++|.++..+..-++.+...++.--.++
T Consensus 3 d~~~~~~~~~~~~~~se~i~~~ANEPSlgLYrlQeHvrks--------lP~lv~~k~~v~~~~~~~~g~~~D~eya~~aV 74 (118)
T PF10167_consen 3 DPELEDKVKKVTERISENIHIVANEPSLGLYRLQEHVRKS--------LPKLVELKKEVQELSQELQGACYDLEYAISAV 74 (118)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHhccceecHHHHHHHH
Confidence 3567777888888888887744 459999887653 12455666666666666666666655544444
Q ss_pred HH
Q psy10214 247 SD 248 (415)
Q Consensus 247 ~d 248 (415)
+.
T Consensus 75 ks 76 (118)
T PF10167_consen 75 KS 76 (118)
T ss_pred HH
Confidence 33
No 193
>KOG3335|consensus
Probab=65.61 E-value=81 Score=30.46 Aligned_cols=136 Identities=18% Similarity=0.114 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHh-HHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHH-HHHHHH
Q psy10214 119 VTKDIVDLRHDLARKEELIK-RHYDKIAVWQNL-LSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLD-LARQME 195 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLr-khy~KIavWqnL-lsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD-~ARQLE 195 (415)
+||=|++.=++-++++...| +.-..++.|-.+ +.-++-+..-+..+..+-...|..-++...|..=.-||= ++-.+=
T Consensus 7 vSKPIAn~IK~~AK~~p~FR~~~~ip~Aq~~hr~~~r~kmr~lg~g~~v~i~PLnEa~Ave~gadlLgE~~iF~vggg~l 86 (181)
T KOG3335|consen 7 VSKPIANQIKRQAKVHPFFRTKICIPPAQLYHRFTVRLKMRALGLGGPVVIRPLNEAAAVEAGADLLGELFIFSVGGGVL 86 (181)
T ss_pred hhHHHHHHHHHHhccChHhHhhhccCHHHhhHHHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHHHhhHHheeecceee
Confidence 67788888888898888888 444455554332 333444444444443342233333333333311111110 000111
Q ss_pred HHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q psy10214 196 AFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQGST 262 (415)
Q Consensus 196 ~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~spaq~~~~ 262 (415)
+|-++ |...+..+-|+..+.+|.+|+.++..+++ +|++-++.+++|.+++.++.+.+.+
T Consensus 87 v~Ey~-R~~~~e~~kee~~~~e~~elr~~~~~l~~-------~i~~~~~~~~~L~~~l~~~~~el~~ 145 (181)
T KOG3335|consen 87 VFEYW-RQARKERKKEEKRKQEIMELRLKVEKLEN-------AIAELTKFFSQLHSKLNKPESELKP 145 (181)
T ss_pred eehhH-HhhhcchhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCccccccc
Confidence 11112 22344445577778899999999988887 6666777777777767777666555
No 194
>KOG3598|consensus
Probab=65.61 E-value=1.9 Score=51.74 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=9.3
Q ss_pred CCCCCccchhHhhhhhhc
Q psy10214 38 GMGPGGLLQGPLAYLEKT 55 (415)
Q Consensus 38 ~~~~~~~f~~~l~~~~~~ 55 (415)
|.+|.|-=+...++++++
T Consensus 1903 ~~~pt~p~~~~~n~~~~t 1920 (2220)
T KOG3598|consen 1903 GARPTGPRAKRANSRADT 1920 (2220)
T ss_pred ccCCCCCcccccchhhhh
Confidence 445555445555555555
No 195
>KOG1733|consensus
Probab=65.54 E-value=71 Score=28.08 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=36.7
Q ss_pred HhhcChhHHHHhhhhchhHHHHHHHHHHHHH--HHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHH
Q psy10214 104 LSALKPELIVKEVNMVTKDIVDLRHDLARKE--ELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEID 181 (415)
Q Consensus 104 ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn--aLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VE 181 (415)
.|...++-++++ ..|.||+--| +||.+..+|- |..| |++...+....+ +.=|.
T Consensus 13 ~s~~~~~~~~m~---------qVkqqlAvAnAqeLv~kisekC---------f~KC---it~PGssl~~~e----~~Cis 67 (97)
T KOG1733|consen 13 GSSKTTEGELMN---------QVKQQLAVANAQELVSKISEKC---------FDKC---ITKPGSSLDSSE----KSCIS 67 (97)
T ss_pred CCCCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH---------HHHH---hCCCCcccCcch----HHHHH
Confidence 455556666777 5666666555 6666555543 5555 445443333344 34467
Q ss_pred HHHHHHHHHHHHH
Q psy10214 182 QATLKFLDLARQM 194 (415)
Q Consensus 182 q~tnRFLD~ARQL 194 (415)
+++.||+| ||.+
T Consensus 68 ~CmdRyMd-awni 79 (97)
T KOG1733|consen 68 RCMDRYMD-AWNI 79 (97)
T ss_pred HHHHHHHH-HHHH
Confidence 88888877 3443
No 196
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=65.49 E-value=29 Score=37.07 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=25.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHH
Q psy10214 177 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDL 225 (415)
Q Consensus 177 Kv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~EL 225 (415)
..-+++.+.+|++..++|++-+|+.|. .||.|+...+
T Consensus 344 e~A~~~~~~~~~~~f~~ldd~YLreRa------------~DI~DV~~Rv 380 (473)
T PRK11377 344 EYAWQQVLKELSQQYQQLDDEYLQARY------------IDVDDLLHRT 380 (473)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHH------------HHHHHHHHHH
Confidence 334667778888888888887776653 3677766553
No 197
>KOG0933|consensus
Probab=65.41 E-value=3e+02 Score=33.04 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hH
Q psy10214 78 EIDQATLKFLDLARQMEA-----FFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQN-LL 151 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~-----fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqn-Ll 151 (415)
+.+-.-+||=|+-.|+|. =-+++|+.++... .++.++-..++++.+++.+|-.++.++++--++|....+ .-
T Consensus 702 ~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~--~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 702 SLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFH--KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556788888777653 3345555553322 234444445669999999999999999988887743321 11
Q ss_pred HhHH---HHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHH
Q psy10214 152 SDLQ---SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARK 228 (415)
Q Consensus 152 sdfQ---scLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRK 228 (415)
+++- ..+..|.++-.. --..-++.....++..+.|-. =++|+--|++..... .+...-+...|..|+.|+...
T Consensus 780 d~~~~re~rlkdl~keik~-~k~~~e~~~~~~ek~~~e~e~--l~lE~e~l~~e~~~~-k~~l~~~~~~~~~l~~e~~~l 855 (1174)
T KOG0933|consen 780 DAKANRERRLKDLEKEIKT-AKQRAEESSKELEKRENEYER--LQLEHEELEKEISSL-KQQLEQLEKQISSLKSELGNL 855 (1174)
T ss_pred HhhhhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1111 122222221000 000111222222333333322 244444444433221 111123355566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10214 229 EELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 229 ErLIqKh~eKIeeWQsvL~dl 249 (415)
..-+.+....+..-++.|+++
T Consensus 856 ~~kv~~~~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 856 EAKVDKVEKDVKKAQAELKDQ 876 (1174)
T ss_pred HHHHHhHHhHHHHHHHHHHHH
Confidence 655555555555555555554
No 198
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=64.98 E-value=1.2e+02 Score=31.78 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=23.9
Q ss_pred CCCCchhhHh----HhHHHHHHHHHHHHHHHHH
Q psy10214 67 LSPLEKDEIK----LEIDQATLKFLDLARQMEA 95 (415)
Q Consensus 67 ~~~~~k~E~~----~~veq~~~kFid~Arq~E~ 95 (415)
.-.||-+.|+ +++|..+..|-+++++++.
T Consensus 213 ~Ilcdg~~I~g~~~vsld~L~~~ltrL~~~~~~ 245 (370)
T PLN03094 213 LIVCDRERIKGEQGVSLDELVGICTRLAREMEA 245 (370)
T ss_pred eeecCCCeeccCCCCCHHHHHHHHHHHHHHhhh
Confidence 4467777788 8999999999999998876
No 199
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=64.61 E-value=94 Score=27.27 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 211 ELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 211 e~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
..+.++||++|+..|++.++-|.+.
T Consensus 91 g~~tk~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 91 NIPSREEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3367899999999998888777654
No 200
>PLN02939 transferase, transferring glycosyl groups
Probab=64.28 E-value=1.1e+02 Score=35.97 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 192 RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~ 247 (415)
+.||+-|+-.+.-.+.+.|-. ++-+|...++...|+.+...+.++...+|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (977)
T PLN02939 274 RELESKFIVAQEDVSKLSPLQ-----YDCWWEKVENLQDLLDRATNQVEKAALVLD 324 (977)
T ss_pred HHHHHHHHhhhhhhhhccchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666654443333333322 123777777777777777777776665554
No 201
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.92 E-value=2.6e+02 Score=31.73 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhH
Q psy10214 126 LRHDLARKEELIKRHYDK 143 (415)
Q Consensus 126 LR~ElaRKnaLLrkhy~K 143 (415)
-|.|++|+-++|+..+++
T Consensus 559 ar~ei~~rv~~Lk~~~e~ 576 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQ 576 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466677766667666664
No 202
>KOG0687|consensus
Probab=63.81 E-value=34 Score=36.08 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=54.5
Q ss_pred hcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 162 TKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDK 238 (415)
Q Consensus 162 SkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eK 238 (415)
.+-|..++.+|++-.-.|+.++..+-+...-.||.+|...|+.+= +--+.+|.+.|...+.=+++=..|=++..-|
T Consensus 109 ~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglf-y~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLF-YLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 344566677888888888888887777888899999998887762 3344466777887777777666665555433
No 203
>KOG1883|consensus
Probab=63.33 E-value=5.1 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=10.4
Q ss_pred CcHHHHHHHHHHHHHHHhhhhcCC
Q psy10214 311 MPQQQQQVQMQQQIHMQHMQQQGM 334 (415)
Q Consensus 311 ~~qq~qq~q~q~~~~~q~~~q~~~ 334 (415)
+++|.++|++++|||-+|+.||+.
T Consensus 1429 hq~q~t~q~q~~Qqq~~~~~qqql 1452 (1517)
T KOG1883|consen 1429 HQMQDTSQHQTIQQQSNHPTQQQL 1452 (1517)
T ss_pred hhhhhhhHHHHHHHHhcchHHHHH
Confidence 444444444444444444444444
No 204
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=63.27 E-value=19 Score=40.47 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=41.8
Q ss_pred CCchhhHhHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q psy10214 69 PLEKDEIKLEIDQATLKFLDLAR--------QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH 140 (415)
Q Consensus 69 ~~~k~E~~~~veq~~~kFid~Ar--------q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh 140 (415)
...+..|..+-+....+||++|. .+. ||++|+.- ..|+++--+ +.|+=|.++-++|+.+
T Consensus 58 ~~~~~~~~~~~~~lf~eFi~~C~~~~~d~~evv~--~L~~~~~~--~~~~f~~S~---------~F~~~l~~~~~~~~~~ 124 (713)
T PF03344_consen 58 KKEKYKLSYENQKLFEEFIELCLAQTSDMPEVVK--FLKRRYEK--AHPEFLSSE---------EFRNFLSRCLARIQNN 124 (713)
T ss_dssp SS---HH--HHHHHHHHHHHHHHHHTTT-TTHHH--HHHHHHHT--C-CCHHCSH---------HHHHHHHHHHHHHHH-
T ss_pred CceeeeeeChHHHHHHHHHHHhcccccCCHHHHH--HHHHHHHh--CCHHHHhHH---------HHHHHHHHHHHHHHCC
Confidence 45666777888899999999994 343 78888776 778777766 6677777777777766
Q ss_pred hhHHH
Q psy10214 141 YDKIA 145 (415)
Q Consensus 141 y~KIa 145 (415)
-.|+=
T Consensus 125 ~~k~y 129 (713)
T PF03344_consen 125 PKKVY 129 (713)
T ss_dssp CCCHH
T ss_pred CCeEE
Confidence 65543
No 205
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=63.26 E-value=2.2e+02 Score=30.76 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHH---HHHHHHHHhhhH-HHHHHHhHHhHHH
Q psy10214 85 KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLA---RKEELIKRHYDK-IAVWQNLLSDLQS 156 (415)
Q Consensus 85 kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~Ela---RKnaLLrkhy~K-IavWqnLlsdfQs 156 (415)
.|+.+.+.+..=|-.|-..|++-|-..--++ .++..++|.+ ++++++++.-++ .....+|+..+..
T Consensus 203 q~l~le~~l~eEy~rkm~aL~~~c~lE~r~k------~e~~~qre~a~~~eaeel~k~~~e~~a~e~~~LL~~lH~ 272 (429)
T PF12297_consen 203 QFLGLEKRLQEEYDRKMVALTAECNLETRKK------MEAQHQREMAEMEEAEELLKHASERSAAECSSLLRKLHG 272 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHhCccHhhHHHHHHHHHHHHh
Confidence 4667777777767667677777666444444 5555666655 666777776664 5555577777653
No 206
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=63.23 E-value=88 Score=32.23 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHhHHhHHHHhh
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYD-KIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~-KIavWqnLlsdfQscLs 159 (415)
-||+..+-.-|+|-+-+|+++-+ .|-.+...-+.|++||.
T Consensus 159 vKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~ 199 (302)
T PF07139_consen 159 VKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLM 199 (302)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544 23333344444556654
No 207
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=63.03 E-value=1.2e+02 Score=32.85 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=38.9
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 173 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLL--SALKPEL------IVKEDIVDLRHDLARKEELIKRHYDKIA 240 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlll--Sa~KPe~------vvKEEI~dLK~ELqRKErLIqKh~eKIe 240 (415)
..++-.+.......|...+.....|.....-.. ...+++. .+=.++.++-.+|+++-..|+.+.+.|+
T Consensus 140 ~~~v~~~~~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~e~Fl~yKd~Li~YL~~Fv~~L~~~~~~I~~~l~~l~ 215 (494)
T TIGR02677 140 AREVHRTLRELYGSFESLADNAQAFMADLQRHRPLEVADYEAFLAYKDRLIAYLQDFIVRLVDRSEQIAQLLRVLA 215 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346777777777777777766666654221111 1122221 1234677777788877777777775553
No 208
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.01 E-value=2.2e+02 Score=30.61 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy10214 219 VDLRHDLARKEELIK 233 (415)
Q Consensus 219 ~dLK~ELqRKErLIq 233 (415)
+++...|....++.+
T Consensus 304 ~ele~RL~~l~~Lkr 318 (563)
T TIGR00634 304 NEIEERLAQIKRLKR 318 (563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 209
>KOG4603|consensus
Probab=62.63 E-value=1.6e+02 Score=28.78 Aligned_cols=115 Identities=8% Similarity=0.110 Sum_probs=55.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH
Q psy10214 76 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155 (415)
Q Consensus 76 ~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ 155 (415)
++-|..+.+.+-+.-|-.|--|=+-.+-++ ..++..+ --+.|+..|.-++.+..+.++.-..-+ ++..
T Consensus 39 ktavqk~Ld~La~~Gki~~K~YGKqKIY~a--~QDqF~~---~~~eel~~ld~~i~~l~ek~q~l~~t~-------s~ve 106 (201)
T KOG4603|consen 39 KTAVQKTLDQLAQQGKIKEKMYGKQKIYFA--DQDQFDM---VSDEELQVLDGKIVALTEKVQSLQQTC-------SYVE 106 (201)
T ss_pred chHHHHHHHHHHHcCchhHHhccceeeEee--cHHhhcC---CChHHHHHHhHHHHHHHHHHHHHHHHH-------HHHH
Confidence 444554544444555555555544434332 2233222 111277777777777777666544444 3344
Q ss_pred HHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchh
Q psy10214 156 SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPEL 212 (415)
Q Consensus 156 scLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~ 212 (415)
+.|.+|++.- .-+|+. ..++.+=+.++-++.-.-+.+...+++.|++
T Consensus 107 aEik~L~s~L------t~eemQ----e~i~~L~kev~~~~erl~~~k~g~~~vtped 153 (201)
T KOG4603|consen 107 AEIKELSSAL------TTEEMQ----EEIQELKKEVAGYRERLKNIKAGTNHVTPED 153 (201)
T ss_pred HHHHHHHHhc------ChHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 4444443321 122332 2233444555555544445555666666655
No 210
>KOG3156|consensus
Probab=62.59 E-value=92 Score=30.89 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhh---hchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVN---MVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n---~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
.+|.+-+.+.-.|+|--.=|-|+ .-++..+.|.+.-|.+ +++.|.++||+||.|...-||++-.|+
T Consensus 78 sl~~vsk~~vtkaqq~~v~~QQ~-~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~ 146 (220)
T KOG3156|consen 78 SLETVSKELVTKAQQEKVSYQQK-VDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKT 146 (220)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44544455555565554555444 4555666666655433 456677777777777766666665554
No 211
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=62.58 E-value=2.6e+02 Score=32.18 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=18.9
Q ss_pred cchhhHhHhHHHHHHHHHHHHHHHHH
Q psy10214 171 LEKDEIKLEIDQATLKFLDLARQMEA 196 (415)
Q Consensus 171 ~DqdEIKv~VEq~tnRFLD~ARQLE~ 196 (415)
++.+-..+.+++...++.+..++++.
T Consensus 514 s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 514 SEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35556667778888888887777766
No 212
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=62.52 E-value=1.9e+02 Score=29.64 Aligned_cols=19 Identities=11% Similarity=0.377 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy10214 233 KRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 233 qKh~eKIeeWQsvL~dlq~ 251 (415)
+++.+.|-.|+...+.++.
T Consensus 184 E~l~e~ilkwRe~~ke~~~ 202 (277)
T PF15003_consen 184 EELAEQILKWREQQKEVSS 202 (277)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3446677779999888864
No 213
>KOG0243|consensus
Probab=62.52 E-value=97 Score=36.72 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
.+.++..|+..|+|++++-..+...|.+.+.-|.+.
T Consensus 544 s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~ 579 (1041)
T KOG0243|consen 544 SQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSEN 579 (1041)
T ss_pred HHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHH
Confidence 377999999999999999999988888866655554
No 214
>COG3006 MukF Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=62.14 E-value=1.8e+02 Score=30.63 Aligned_cols=43 Identities=30% Similarity=0.296 Sum_probs=25.7
Q ss_pred HHHHHhHHhHHHHhhhhhcccccccccchhhHhHh--HHHHHHHHHHHHHHH
Q psy10214 145 AVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLE--IDQATLKFLDLARQM 194 (415)
Q Consensus 145 avWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~--VEq~tnRFLD~ARQL 194 (415)
..++.+..|+|+-|..+.+= -+-.|+.| -++++.|||.-|-.|
T Consensus 247 ~fvd~li~dlq~kldriisw-------gqqaidlwigydrhvhkfirtaidm 291 (440)
T COG3006 247 HFVDRLVFDLQSKLDRIISW-------GQQSIDLWIGYDRHVHKFIRTAIDM 291 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------hhhhhHHHhcchHHHHHHHHHHhhc
Confidence 34556666666666555331 13344555 579999998877433
No 215
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=62.07 E-value=1.9e+02 Score=29.55 Aligned_cols=82 Identities=13% Similarity=0.279 Sum_probs=38.9
Q ss_pred CCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHH---H----HHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHH
Q psy10214 61 LPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAF---F----LQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARK 133 (415)
Q Consensus 61 ~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~f---F----Lqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRK 133 (415)
+.++..|...|.++....++..-.+.-.+..+.+.- - ..+...+ ...-+.+-........++..+++++.|.
T Consensus 80 V~kGq~L~~l~~~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~i~~~~~~l~~~~~~~~~~ 158 (421)
T TIGR03794 80 VKKGQVVARLFQPELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHF-QKSKEALEETIGRLREELAALSREVGKQ 158 (421)
T ss_pred ECCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH-HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777776655544444444321 1 0100000 0111112222233344555566666666
Q ss_pred HHHHHHhhhH
Q psy10214 134 EELIKRHYDK 143 (415)
Q Consensus 134 naLLrkhy~K 143 (415)
..++++.+..
T Consensus 159 ~~l~~~~~~~ 168 (421)
T TIGR03794 159 RGLLSRGLAT 168 (421)
T ss_pred HHHHHhhhhh
Confidence 6666666543
No 216
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=61.98 E-value=1.6e+02 Score=30.74 Aligned_cols=87 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHH
Q psy10214 144 IAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRH 223 (415)
Q Consensus 144 IavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ 223 (415)
.+.|++|.++|+.+ +-+...++...+=+......-+=.+.++ +..+.+|+.
T Consensus 3 ~eEW~eL~~efq~L-----------------qethr~Y~qKleel~~lQ~~C~ssI~~Q------------kkrLk~L~~ 53 (330)
T PF07851_consen 3 EEEWEELQKEFQEL-----------------QETHRSYKQKLEELSKLQDKCSSSISHQ------------KKRLKELKK 53 (330)
T ss_pred HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q psy10214 224 DLARK--------EELIKRHYDKIAVWQNLLSDLQGWAKSPAHQG 260 (415)
Q Consensus 224 ELqRK--------ErLIqKh~eKIeeWQsvL~dlq~~~~spaq~~ 260 (415)
.|+++ .+++++..++|.+.+..+.|.+..+.++ .|+
T Consensus 54 sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkk-NGl 97 (330)
T PF07851_consen 54 SLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAFLPKK-NGL 97 (330)
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhCCCC-CCc
No 217
>KOG4250|consensus
Probab=61.85 E-value=3e+02 Score=31.72 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 218 IVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 218 I~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+..+..-.+.|...+..+..+++.|-+++++.
T Consensus 599 ~~~~~s~~~~c~~k~~~~l~~~E~~~~~m~~~ 630 (732)
T KOG4250|consen 599 LSQLLSNLDECKQKISEFLPKLEKWFRLMKET 630 (732)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344445556666666666666666665554
No 218
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=61.78 E-value=1.8e+02 Score=29.05 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHH
Q psy10214 112 IVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLA 191 (415)
Q Consensus 112 i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~A 191 (415)
|..|.+...-.+...++++.+..+++.+.+.++..-+.-.++|..-.+.+.. +..++...++++-.+. +.+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~--------ei~~~r~r~~~~e~kl-~~v 85 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES--------EIQEIRERIKRAEEKL-SAV 85 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-hcc
Q ss_pred HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 192 RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 192 RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
...+.|=--.+...++.+....+..++.+|..+++.++..+.--.+++..=..-+.+++.
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~ 145 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA 145 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 219
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.66 E-value=1.4e+02 Score=28.03 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=5.0
Q ss_pred hhHHHHHHHHH
Q psy10214 120 TKDIVDLRHDL 130 (415)
Q Consensus 120 ~~di~eLR~El 130 (415)
|.|+..|...|
T Consensus 32 R~dVi~L~e~L 42 (189)
T PF10211_consen 32 RQDVIQLQEWL 42 (189)
T ss_pred HHHHHHHHHHH
Confidence 34455554433
No 220
>KOG4657|consensus
Probab=61.52 E-value=1.9e+02 Score=29.23 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhh
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLT 162 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LS 162 (415)
++.+-.+|+.+-++|+.+...+......-..++|+.+..|.
T Consensus 66 ~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~ 106 (246)
T KOG4657|consen 66 DLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLR 106 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888887765555555666777666553
No 221
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.49 E-value=1.6e+02 Score=28.43 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIA 145 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIa 145 (415)
-|..++.+|.++-+.+++|+- .++ . .-+..+.. -+...++|-=++=.-.||+|+|..
T Consensus 58 ~i~~~l~kF~~~l~ei~~~~~---~L~-~-q~~~~l~~------~L~~F~k~dl~~vke~kk~FdK~s 114 (200)
T cd07638 58 VIETSLTKFSDTLQEMINYHT---ILF-D-QAQRSIKA------QLQTFVKEDLRKFKDAKKQFDKVS 114 (200)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHH-H-HHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567889999999999999943 222 2 22333333 344444443344456788899886
No 222
>KOG3647|consensus
Probab=61.25 E-value=1.4e+02 Score=31.02 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhh
Q psy10214 192 RQMEAFFLQKRFLL 205 (415)
Q Consensus 192 RQLE~FFLQKrlll 205 (415)
+.-+.|||+-+.+.
T Consensus 179 kly~~Y~l~f~nl~ 192 (338)
T KOG3647|consen 179 KLYQRYFLRFHNLD 192 (338)
T ss_pred HHHHHHHHHHhhHH
Confidence 46667777665433
No 223
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=61.11 E-value=13 Score=30.71 Aligned_cols=29 Identities=21% Similarity=0.530 Sum_probs=23.3
Q ss_pred HHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 113 VKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 113 ~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
+.||.. +|.+|+.++.+|+++|++...++
T Consensus 54 ~eeq~~---~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEE---EIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 445554 89999999999999999987764
No 224
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=61.06 E-value=55 Score=26.97 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhh-hccCchhhh------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLL-SALKPELIV------KEDIVDLRHDLARKEELIKRHYDK 238 (415)
Q Consensus 192 RQLE~FFLQKrlll-Sa~KPe~vv------KEEI~dLK~ELqRKErLIqKh~eK 238 (415)
..|..|||..++.- +.--.+.++ |.++..|+.|++++..+|.+..+.
T Consensus 19 LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 19 LKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999777652 222223344 334444555555555554444433
No 225
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=60.98 E-value=1.6e+02 Score=33.33 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
+..|+..|++||..||+.+.....++.+
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888877777666643
No 226
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=60.94 E-value=1.3e+02 Score=27.42 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
..++..++.|++|..........+++.++..|.+.
T Consensus 53 ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 53 EADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888898888888888888888888888877
No 227
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=60.83 E-value=3e+02 Score=31.40 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
.+.++..+++...+.+.+..+++..++..+..+
T Consensus 411 ~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 411 ELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555666666666666666666654
No 228
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.47 E-value=30 Score=33.17 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=51.9
Q ss_pred CCccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhch
Q psy10214 41 PGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVT 120 (415)
Q Consensus 41 ~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~ 120 (415)
|..=|+..|+.|.+.. . -+...+..+-+|..|+|+..++++-=.++.-++.-++ |. ..-
T Consensus 103 P~~~~~~~l~~l~~~g----~----------v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~-----ka--~~~ 161 (262)
T PF14257_consen 103 PADKFDSFLDELSELG----K----------VTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLE-----KA--KTV 161 (262)
T ss_pred CHHHHHHHHHHHhccC----c----------eeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hc--CCH
Confidence 5556888888887541 1 1223445566778888888887765443333332111 11 123
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 121 KDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
+|+.++..||.|-+.-|..-...+..|+
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888887777776666665554
No 229
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=60.23 E-value=12 Score=40.58 Aligned_cols=30 Identities=13% Similarity=0.404 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQN 244 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQs 244 (415)
..||..|+.+...+..+++.+.+..+-|..
T Consensus 329 E~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~ 358 (619)
T PF03999_consen 329 EEEIERLKEEYESRKPILELVEKWESLWEE 358 (619)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777666544444444433
No 230
>PF11757 RSS_P20: Suppressor of RNA silencing P21-like; InterPro: IPR021742 This is a large family of putative suppressors of RNA silencing proteins, P20-P25, from ssRNA positive-strand viruses such as Closterovirus, Potyvirus and Cucumovirus families. RNA silencing is one of the major mechanisms of defence against viruses, and, in response, some viruses have evolved or acquired functions for suppression of RNA silencing. These counter-defencive viral proteins with RNA silencing suppressor (RSS) activity were originally discovered in the members of plant virus genera Potyvirus and Cucumovirus. Each of the conserved blocks of amino acids found in P21-like proteins corresponds to a computer-predicted alpha-helix, with the most C-terminal element being 42 residues long. This suggests conservation of the predominantly alpha-helical secondary structure in the P21-like proteins.
Probab=59.93 E-value=85 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhccCchhhhHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLLSALKPELIVKEDIVDL 221 (415)
Q Consensus 192 RQLE~FFLQKrlllSa~KPe~vvKEEI~dL 221 (415)
+.+=.||.+|...++...-..+++.++.-+
T Consensus 81 ~dlv~Ff~~ky~~lt~v~~~e~~~~~~k~~ 110 (137)
T PF11757_consen 81 KDLVAFFVKKYSELTHVPFSEAMEMKMKPL 110 (137)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456669999999998777777766555444
No 231
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=59.84 E-value=1.2e+02 Score=26.66 Aligned_cols=93 Identities=22% Similarity=0.189 Sum_probs=0.0
Q ss_pred chhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cChhHHHHh
Q psy10214 45 LQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSA---------LKPELIVKE 115 (415)
Q Consensus 45 f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~---------~kpe~i~ke 115 (415)
|..++..+.+........-...+ ..+++....+|+..-.+.|.-+++-.+.+.+ ..-+.|..+
T Consensus 18 l~~l~k~~~~~~~~~~~~~~~~~--------~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~ 89 (139)
T PF05615_consen 18 LKRLLKRFLKWCNLSDSILSGQP--------SEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQE 89 (139)
T ss_pred HHHHHHHHHHHHhhhcccccccc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhchhHHHHHHHHHHHHH--HHHHHhhhHHH
Q psy10214 116 VNMVTKDIVDLRHDLARKE--ELIKRHYDKIA 145 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaRKn--aLLrkhy~KIa 145 (415)
.-.++++|.+||.+|.+-. -.-+++|+.++
T Consensus 90 i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La 121 (139)
T PF05615_consen 90 IEQAKKEIEELKEELEEAKRVRQNKEEYDALA 121 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 232
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=59.71 E-value=1.2e+02 Score=26.62 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
-+..+..++..-...+.+..++...|.+..+.+..
T Consensus 122 pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k 156 (229)
T PF03114_consen 122 PLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEK 156 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666777777777777777777777666654
No 233
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=59.49 E-value=2e+02 Score=31.99 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQM 194 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQL 194 (415)
++.+...-+.....+.||+...+...-++.+.++..+..|...+.. .++++..+...-..++..|+++
T Consensus 298 ~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~-----~~~Le~~~~~l~~~~~~~A~~L 365 (557)
T COG0497 298 RLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEES-----LEALEKEVKKLKAELLEAAEAL 365 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666777777777777777788888877777554432 4555666666666666666554
No 234
>KOG2150|consensus
Probab=59.01 E-value=68 Score=35.61 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCcchhhHHhhccCCCCC
Q psy10214 385 PGGMGPGGLLQGPLAYLEKTTSNIGLP 411 (415)
Q Consensus 385 ~~~~~~~~~~~~~la~le~~tsnig~~ 411 (415)
|-+|.|++..-.-+--++.+++++..|
T Consensus 327 ~~s~~~P~~~~p~~~~~~~~~st~~~p 353 (575)
T KOG2150|consen 327 PLSMPPPHSPTPSLKRIQHKVSTLDGP 353 (575)
T ss_pred cCCCCCCCCCCccccchhhccccccCC
Confidence 456666666555555566666666655
No 235
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=58.93 E-value=1.2e+02 Score=28.74 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy10214 185 LKFLDLARQMEAFFL 199 (415)
Q Consensus 185 nRFLD~ARQLE~FFL 199 (415)
....+..+++|..-+
T Consensus 192 ~~~~~~~Q~lEe~Ri 206 (236)
T cd07651 192 KAALDDFQDLEEERI 206 (236)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666433
No 236
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=58.60 E-value=2.4e+02 Score=31.18 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
-+..++.+++-++.-+|.-|..-+=.+. + +.- .-+++.++...+-++++.|++...|+
T Consensus 332 aL~~A~rEvl~~~d~ie~ml~~~~~~~~--~-~~~------~~~~i~~~e~~vd~~~~~Ik~YL~~l 389 (533)
T COG1283 332 ALANAAREVLRLGDSIEQMLERLYEYIE--G-DAK------KVKEIRKLEDAVDRLYEEIKLYLARL 389 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-chH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888888765443332 2 111 12255566666666666666665543
No 237
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=58.57 E-value=69 Score=26.26 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
.+.+-.+++|.-++ -||++|-+.|++--+.+ +.+-.+|+.+|.+.+.-|-..-..+
T Consensus 4 ~~Yd~~lqe~~al~--------sK~A~Leaek~~~eL~~----seeY~eL~~ri~~lr~~ld~~~~~~ 59 (71)
T PF08663_consen 4 SEYDDQLQEYFALA--------SKRAVLEAEKSEAELEE----SEEYQELEDRIEELRAELDDTLDEF 59 (71)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHhcCCHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555556665554 48999999999988888 6688889888888877766555444
No 238
>KOG2398|consensus
Probab=58.48 E-value=2.7e+02 Score=31.15 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcChhHHHHhhhhch--hHHHHHHHHHHHHH----HHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccc
Q psy10214 95 AFFLQKRFLLSALKPELIVKEVNMVT--KDIVDLRHDLARKE----ELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVS 168 (415)
Q Consensus 95 ~fFLqkr~~ls~~kpe~i~ke~n~~~--~di~eLR~ElaRKn----aLLrkhy~KIavWqnLlsdfQscLs~LSkqE~se 168 (415)
++|+++|+.+.-.....+-+-+++.. .++.-+...+.-.+ ++.+.|+.-...-++++.+...-...+.+....
T Consensus 12 ~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~- 90 (611)
T KOG2398|consen 12 ADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKK- 90 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred cccchhhHhHhHHHHHHHHHHHH---HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 169 TTLEKDEIKLEIDQATLKFLDLA---RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNL 245 (415)
Q Consensus 169 r~~DqdEIKv~VEq~tnRFLD~A---RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsv 245 (415)
+...-..+...++.+++|.+.. ...++++-+.+.+.+..+-.-. +.++...+..++..+.-.+.+..+++.-++-
T Consensus 91 -~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~k~-~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~ 168 (611)
T KOG2398|consen 91 -SKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYLHRCQEKESLKEKEKR-KKELAKAELKIKEAREEYRSLVAKLEKVRKD 168 (611)
T ss_pred -HHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q psy10214 246 LSD 248 (415)
Q Consensus 246 L~d 248 (415)
..+
T Consensus 169 w~~ 171 (611)
T KOG2398|consen 169 WEQ 171 (611)
T ss_pred HHH
No 239
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.42 E-value=1.8e+02 Score=28.15 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=44.7
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhccc
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKED 165 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE 165 (415)
.=|..+...||.++.-|.++-.=+.+.-.++.+.-.|....-.-...|-.+|..|+..+
T Consensus 15 ~~p~~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~ 73 (246)
T cd07597 15 LLPPDFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELT 73 (246)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34667777889988899888888888887777776666666666777778888776654
No 240
>PRK10780 periplasmic chaperone; Provisional
Probab=58.02 E-value=1.2e+02 Score=27.38 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=30.5
Q ss_pred CCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10214 65 RSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 107 (415)
Q Consensus 65 ~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~ 107 (415)
.-|+++|-++|=.+.. .|.++...+|..|-.++-.|...
T Consensus 24 ~KIg~Vd~q~il~~~p----~~k~~~~~le~~~~~~q~el~~~ 62 (165)
T PRK10780 24 DKIAIVNMGSIFQQVP----QRTGVSKQLENEFKGRASELQRM 62 (165)
T ss_pred cCeEEeeHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889887665555 89999999999998887777544
No 241
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=57.89 E-value=82 Score=30.30 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=59.8
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHH
Q psy10214 117 NMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEA 196 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~ 196 (415)
|+|..=+..-+.+-..-++.|++-..-=-.=++|+.-|...++.=.+.. +.+|+| +=..-||+.|.+-+..-.-+-+
T Consensus 44 ~mfnqLl~s~kitKtaI~~aLr~mkKsGi~k~EL~~~~~eil~gK~kS~-La~ctD--~Eal~iDrVI~~vL~~~~gl~~ 120 (176)
T PF06576_consen 44 NMFNQLLASKKITKTAINEALRRMKKSGISKPELEAFLREILNGKQKSW-LAFCTD--DEALFIDRVIGEVLAEHPGLIN 120 (176)
T ss_pred hHHHHHHhcccccHHHHHHHHHHHHHhcCCcHHHHHHHHHHhCcccccc-cceecc--hHHHHHHHHHHHHHHhCcchHH
Confidence 4444444444444455555555433211011245555566666444422 546775 3345577777666654222222
Q ss_pred HHHHHHHhhhcc-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 197 FFLQKRFLLSAL-KPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 197 FFLQKrlllSa~-KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
...|+. . -+ |.+..+.++.++ .+.|=-+..|.++|+.|-++.+..
T Consensus 121 Vl~qrY-~--~RgkSk~~MA~eL~~-----~hPew~~~TC~~RI~~wL~~aE~~ 166 (176)
T PF06576_consen 121 VLRQRY-C--GRGKSKRKMAEELNE-----KHPEWCLRTCRRRIDWWLSIAEFM 166 (176)
T ss_pred HHHHHH-H--cccccHHHHHHHHhc-----cCCcccHHHHHHHHHHHHHHHHHH
Confidence 222221 1 11 122222222222 234667889999999999998865
No 242
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=57.82 E-value=2.8e+02 Score=30.13 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=47.4
Q ss_pred hHhHhHHHHH-HHHHHHHHHH---HHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy10214 74 EIKLEIDQAT-LKFLDLARQM---EAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQN 149 (415)
Q Consensus 74 E~~~~veq~~-~kFid~Arq~---E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqn 149 (415)
+.+..-+..+ .+|-++-.++ |.+--+.||.-+...-..+-...+.+..++.+++.+|. +|+..+-..-..+..
T Consensus 64 ~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~---~L~~~e~~nr~~i~~ 140 (560)
T PF06160_consen 64 EWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELD---ELLESEEKNREEIEE 140 (560)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3444444433 4555555554 77777777776665555554444444455555555554 344444444444455
Q ss_pred hHHhHHHHhhhhhcc
Q psy10214 150 LLSDLQSCLQVLTKE 164 (415)
Q Consensus 150 LlsdfQscLs~LSkq 164 (415)
+.+.|+.+=..|.+.
T Consensus 141 l~~~y~~lrk~ll~~ 155 (560)
T PF06160_consen 141 LKEKYRELRKELLAH 155 (560)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666665555443
No 243
>KOG2346|consensus
Probab=57.74 E-value=1e+02 Score=34.33 Aligned_cols=126 Identities=15% Similarity=0.226 Sum_probs=77.1
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh----HHH
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLL----SALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD----KIA 145 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~l----s~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~----KIa 145 (415)
+.++-.++-++-|||.--+.=.--|.||++. +..-|-.+-.=..+|-.|..+.-+|+.-.=.-.+||.. |..
T Consensus 444 c~~~ra~kLl~hY~~~~gl~vs~~LrK~~~t~~w~~~~epr~vra~v~r~vee~~~~d~ev~lll~~~rK~k~s~~~~~~ 523 (636)
T KOG2346|consen 444 CRVFRAEKLLQHYIDTRGLKVSVLLRKRFKTPNWVKHKEPREVRAYVDRFVEELEEVDKEVKLLLPQFRKHKRSGSNKMA 523 (636)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhcCCccccccccchHHHHHHHHHHHHHHHhHHHHHhccccccccccCccccc
Confidence 4455577788888888777777778888763 33333333222223333444555554433333455555 555
Q ss_pred HHHHhHHhHHHHhhh----hhcccccccccchhh-HhHhHHHHHHHHHHHHH------------HHHHHHHHHHHh
Q psy10214 146 VWQNLLSDLQSCLQV----LTKEDEVSTTLEKDE-IKLEIDQATLKFLDLAR------------QMEAFFLQKRFL 204 (415)
Q Consensus 146 vWqnLlsdfQscLs~----LSkqE~ser~~DqdE-IKv~VEq~tnRFLD~AR------------QLE~FFLQKrll 204 (415)
.=.+|++.++.+|.+ .++.| + ++.. +++.|.-+.-.|+++.| |+||+|||+-+.
T Consensus 524 ~~t~l~t~~~kLf~erid~f~~ve-F----n~~SvvT~ivK~~LK~l~E~vRLqTf~rfG~qQvQvDc~fLq~~L~ 594 (636)
T KOG2346|consen 524 RSTLLETHLAKLFKERIDIFTKVE-F----NQESVVTTIVKLCLKSLQEYVRLQTFNRFGFQQVQVDCQFLQAPLK 594 (636)
T ss_pred hhHHHHHHHHHHHHHHhhhhceee-e----cchhhhHHHHHHHHHHHHHHHHHHhhcccceeeeehhHHHHHHHHH
Confidence 667888888888774 23333 2 3333 45557777777888886 899999988653
No 244
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.71 E-value=2.4e+02 Score=29.24 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhc
Q psy10214 89 LARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 89 ~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSk 163 (415)
++..+..|=-+++.++. .++++.--.+..|+.|..||+||.+-..+.++-|..-..=..++|..+..++.
T Consensus 186 L~~et~~~EekEqqLv~-----dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~ 255 (306)
T PF04849_consen 186 LKTETDTYEEKEQQLVL-----DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAA 255 (306)
T ss_pred hhHHHhhccHHHHHHHH-----HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334455555665552 23444444556888888888888888888887776666666667766666643
No 245
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=57.39 E-value=1.1e+02 Score=33.92 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=25.9
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHH
Q psy10214 84 LKFLD--LARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 84 ~kFid--~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaR 132 (415)
.+|+. +|=..+.|=|.+|+.+..- +--+.| +++++||.++++-|..
T Consensus 195 ~~F~~lsL~f~~D~~TLe~R~~~~eR--~RdlaE-eNl~kEi~~~~~~l~~ 242 (538)
T PF05781_consen 195 AEFLRLSLGFKCDRFTLEKRLKLEER--SRDLAE-ENLKKEIENCLKLLES 242 (538)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHH
Confidence 35554 4567788999999998543 233344 2334444444444443
No 246
>KOG0971|consensus
Probab=57.38 E-value=4.1e+02 Score=31.89 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHhHHhHHHHhhh
Q psy10214 85 KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD----KIAVWQNLLSDLQSCLQV 160 (415)
Q Consensus 85 kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~----KIavWqnLlsdfQscLs~ 160 (415)
+.+-++.-+-|-.-|.+-.|+...+|-++|- -.++.|+.-..+-+-.-=+||++... ...-+.-.+.-||..++.
T Consensus 668 rllyll~slqaaL~q~e~al~~c~vdvl~ka-~~~y~emsahEk~lD~~ieLLkk~qlDEntn~e~i~k~l~yfq~m~s~ 746 (1243)
T KOG0971|consen 668 RLLYLLSSLQAALHQYEHALSQCSVDVLKKA-GSLYPEMSAHEKSLDFLIELLKKDQLDENTNVEPITKALKYFQHLYSI 746 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHHHHHHH-hhccchhhHHHHHHHHHHHHHhhcccccccCcchHHHHHHHHHHHHHH
Confidence 3344444555666677888877777666664 66677777777777776778877543 344444556667777777
Q ss_pred hhcccccccccchhhHhHhHHHHHHHH---HHHH---HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHH
Q psy10214 161 LTKEDEVSTTLEKDEIKLEIDQATLKF---LDLA---RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKR 234 (415)
Q Consensus 161 LSkqE~ser~~DqdEIKv~VEq~tnRF---LD~A---RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqK 234 (415)
+.+.+.+ . -..|+.-++.-+ +|++ -..=.+|||.-..-+ -+-.-+.+|..++.-+++.+.|
T Consensus 747 hl~~qll-d------e~q~~~d~iasl~A~ld~~~vnt~r~~~flQe~~eat------ds~~llq~Lne~~~a~rq~~kk 813 (1243)
T KOG0971|consen 747 HLAEQLL-D------ETQQLADHIASLQAALDCMSVNTGRLRAFLQEGQEAT------DSALLLQDLNESCSAIRQFCKK 813 (1243)
T ss_pred hccccch-h------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6664433 1 123333333222 2222 133446665543222 1122356666666666666666
Q ss_pred HHHHH
Q psy10214 235 HYDKI 239 (415)
Q Consensus 235 h~eKI 239 (415)
.++++
T Consensus 814 i~RrL 818 (1243)
T KOG0971|consen 814 IRRRL 818 (1243)
T ss_pred HHHhC
Confidence 66654
No 247
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=57.26 E-value=1.8e+02 Score=27.70 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhccc
Q psy10214 94 EAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKED 165 (415)
Q Consensus 94 E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE 165 (415)
+.||+.++--+..+ ...||.-...-+.+++++.+-.... .+|=.++..|+.-|
T Consensus 11 D~~F~~~k~~i~~L---------------e~~Lk~l~~~~e~lv~~r~ela~~~----~~f~~s~~~L~~~E 63 (224)
T cd07623 11 DQWFEEKQQQIENL---------------DQQLRKLHASVESLVNHRKELALNT----GSFAKSAAMLSNCE 63 (224)
T ss_pred CHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 46777776555222 1245555555566666666655333 34444444444433
No 248
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.83 E-value=1.2e+02 Score=25.63 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~ 254 (415)
...+|..|..+|.....-+.+..++|..++..-+.|+...+
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36688888888888888888888888888888888876444
No 249
>KOG0244|consensus
Probab=56.54 E-value=88 Score=36.53 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=27.7
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhhH----HHHHHHhHHhHH
Q psy10214 117 NMVTKDIVDLRHDLARKEELIKRHYDK----IAVWQNLLSDLQ 155 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLrkhy~K----IavWqnLlsdfQ 155 (415)
|.++.|+.++.+.|+.|+++.++.-.. ..+.+..+++.-
T Consensus 470 ~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~ 512 (913)
T KOG0244|consen 470 GSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSG 512 (913)
T ss_pred hhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhh
Confidence 567889999999999999999887653 333444444443
No 250
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.17 E-value=3.6e+02 Score=31.95 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
...|+++||.+|+...+.+.-...+.-.|+..+..|+.
T Consensus 388 ~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALek 425 (1480)
T COG3096 388 AELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALER 425 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888888888888877777754
No 251
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=56.15 E-value=1.6e+02 Score=28.79 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----------HHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYD----------KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEID 181 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~----------KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VE 181 (415)
++.+++..++++++-|.++.. +-..-..|++.-......+-++-+....+|+.-++.-+.
T Consensus 90 ~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~~~pi~~d~~~~ 159 (209)
T COG5124 90 KIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSLQKIEPIRWDAAKI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccccccCchhHHHHhh
Confidence 788888888888877766652 333334555555555555543333334556666655544
No 252
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=55.84 E-value=1.2e+02 Score=27.54 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhHH---HHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHH
Q psy10214 84 LKFLDLARQMEAFFLQKRFLLSALKPELI---VKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 84 ~kFid~Arq~E~fFLqkr~~ls~~kpe~i---~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQsc 157 (415)
.-|+.+|-.+..+|-+-=-.+ +.++..| +|| +..+++.+-.++.+..+.+.++-+.|+.++++...+..|
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~V-a~~Q~~L~~riKe---vd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~ 99 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAV-AFDQNALAKRIKE---VDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRC 99 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888887765432222 2233333 344 333444444555544455555555455555554444444
No 253
>KOG4196|consensus
Probab=55.03 E-value=1.8e+02 Score=27.03 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~ 254 (415)
-++.+...|+.|+++..+-+......++.|+...+.+.+.+.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346678888888888888888889999999999999988665
No 254
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=54.87 E-value=74 Score=27.82 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q psy10214 185 LKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLAR 227 (415)
Q Consensus 185 nRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqR 227 (415)
.-|-+.-++-|++|+.++- ++.+..|+.+|+.
T Consensus 52 ~~f~krE~A~E~~Y~r~~E-----------kEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 52 GAFGKREAAQEEQYFRKKE-----------KEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred CccchHHHhhHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 4555666777887665543 4556666666554
No 255
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=54.69 E-value=2e+02 Score=31.12 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHH
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQs 156 (415)
.+|+..||.||+-.+.+-.. ....|.+..+++..
T Consensus 154 ~~el~~lrrdLavlRQ~~~~---~~~~~~~sm~~i~~ 187 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNS---FFTEIKESIKDILE 187 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 46888888888765544333 34444444444443
No 256
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.59 E-value=1.3e+02 Score=32.90 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+..+++|+.|++...+..++..+||++-+..++.|+.
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5667777777764445555566666666666666644
No 257
>KOG3915|consensus
Probab=54.16 E-value=1.4e+02 Score=33.08 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=30.5
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-hhHHHHh
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK-PELIVKE 115 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~k-pe~i~ke 115 (415)
|-+.+.|.-.+..-||.||+-|.-|-.++..|-..- -|..|+|
T Consensus 502 eTll~niq~llkva~dnar~qekQiq~Ek~ELkmd~lrerelre 545 (641)
T KOG3915|consen 502 ETLLTNIQGLLKVAIDNARAQEKQIQLEKTELKMDFLRERELRE 545 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777778889999999998888887774322 2444555
No 258
>KOG1961|consensus
Probab=53.89 E-value=2.9e+02 Score=31.42 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=43.1
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNL 150 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnL 150 (415)
+.||+-.++.++....-+.++++|.=+-+ +. ..+-++-++| ++-+..|-+.+.--|..| +...++
T Consensus 33 ~~~e~v~~~lktg~~lr~y~~~ve~~l~k--~e--~~Siqdyi~e----s~~~~~lhNqi~~cd~Vl-------~rme~~ 97 (683)
T KOG1961|consen 33 LDDELVKEALKTGDDLREYSKQVENELRK--AE--RKSIQDYIKE----SENLASLHNQIRACDSVL-------ERMETM 97 (683)
T ss_pred cchHHHHHHHhcCCcchHHHHHHHHHHHH--HH--hhhhHHHHHh----hhhhhhHhhhHHHHHHHH-------HHHHHH
Confidence 56777778888888888888888875433 12 2334455666 223333333333333332 223455
Q ss_pred HHhHHHHhhhhhcc
Q psy10214 151 LSDLQSCLQVLTKE 164 (415)
Q Consensus 151 lsdfQscLs~LSkq 164 (415)
|+.||+.|..++++
T Consensus 98 L~~FQ~~L~sissD 111 (683)
T KOG1961|consen 98 LSSFQSDLSSISSD 111 (683)
T ss_pred HHHHHHHHHhHHHH
Confidence 55566555555443
No 259
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=53.83 E-value=2.2e+02 Score=27.79 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhccc
Q psy10214 94 EAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKED 165 (415)
Q Consensus 94 E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE 165 (415)
+.||..++--+..+. ..||+=...-+.+.+++.+-... +.+|=.|+..|+.-|
T Consensus 21 D~~F~~~k~yi~~Le---------------~~Lk~l~k~~~~lv~~rkela~~----~~efa~s~~~L~~~E 73 (234)
T cd07664 21 DAWFEEKQQQFENLD---------------QQLRKLHASVESLVCHRKELSAN----TAAFAKSAAMLGNSE 73 (234)
T ss_pred cHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCc
Confidence 478888776553321 24555555556666666665533 445555556565433
No 260
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=53.75 E-value=59 Score=34.67 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q psy10214 120 TKDIVDLRHDLARKEELIKRH 140 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkh 140 (415)
.+++.+||.||+-.+.+-..+
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~ 170 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEF 170 (424)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 447888888887655444433
No 261
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=53.43 E-value=67 Score=29.84 Aligned_cols=41 Identities=29% Similarity=0.303 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 121 KDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
..|.+|+.|++.++..|+..-+.|.......+.+++.+..|
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555555555555555555555554443
No 262
>KOG2004|consensus
Probab=53.41 E-value=4.4e+02 Score=31.00 Aligned_cols=39 Identities=15% Similarity=0.437 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHhc
Q psy10214 213 IVKEDIVDLRHDL----ARKEELIKRHYDKIAV-------WQNLLSDLQG 251 (415)
Q Consensus 213 vvKEEI~dLK~EL----qRKErLIqKh~eKIee-------WQsvL~dlq~ 251 (415)
++++.+..+|.|| +.|+.+..++.+||.. |+-+-+++..
T Consensus 317 lL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~k 366 (906)
T KOG2004|consen 317 LLREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTK 366 (906)
T ss_pred HHHHHHHHHHHhhCCCccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHH
Confidence 5566666666665 6899999999999986 7777666654
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.31 E-value=1.4e+02 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=13.1
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAF 96 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~f 96 (415)
+++..+++....+..++...+|..
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 264
>KOG2128|consensus
Probab=53.19 E-value=2.7e+02 Score=34.19 Aligned_cols=103 Identities=18% Similarity=0.108 Sum_probs=55.2
Q ss_pred hccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHH
Q psy10214 54 KTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARK 133 (415)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRK 133 (415)
+.+-.+.-+.++.-.+.++..-+..++..-.-|++.-+-...=|++ -+.+-.+.+-+++.+-+--+=.|.+++||
T Consensus 535 ~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~-----~~~~~~~~~~~~~evv~~qs~~R~~lsrk 609 (1401)
T KOG2128|consen 535 KSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ-----YIPRDVYLDSAKKEVVKFQSLTRGALSRK 609 (1401)
T ss_pred cccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh-----hchHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3333333356666667777777777776544555544444433333 22222233333333333333445556665
Q ss_pred H-----HHHHHhhhHHHHHHHhHHhHH--HHhhhh
Q psy10214 134 E-----ELIKRHYDKIAVWQNLLSDLQ--SCLQVL 161 (415)
Q Consensus 134 n-----aLLrkhy~KIavWqnLlsdfQ--scLs~L 161 (415)
. +..++|..++...+.+...|. .|+..|
T Consensus 610 ~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 610 KYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence 5 455566667777777777776 666655
No 265
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=53.11 E-value=2.3e+02 Score=27.66 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=35.7
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
..|||- |+.++.||+++-+.||+|.- .++ ....+.|+ . -+.+.++|-=++=.--+|.|+|.
T Consensus 59 ~dDe~~--I~~~L~kF~~~L~ei~~~r~---~L~-~qa~~~l~-~------~L~~F~kedi~~~Ke~kK~FdK~ 119 (207)
T cd07636 59 TDDEIC--IARSLQEFAAVLRNLEDERT---RMI-ENASEVLI-T------PLEKFRKEQIGAAKEAKKKYDKE 119 (207)
T ss_pred cccHHH--HHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHH-H------HHHHHHHHHHHHHHHHhhhHhhh
Confidence 345553 45899999999999999853 222 12223333 2 33344443334444557777776
No 266
>KOG0980|consensus
Probab=53.03 E-value=4.6e+02 Score=31.15 Aligned_cols=8 Identities=38% Similarity=0.356 Sum_probs=4.3
Q ss_pred ccCCCCCC
Q psy10214 252 WAKSPAHQ 259 (415)
Q Consensus 252 ~~~spaq~ 259 (415)
+.-+|.+.
T Consensus 607 ~ld~P~~~ 614 (980)
T KOG0980|consen 607 QLDSPLHW 614 (980)
T ss_pred hcCCCccc
Confidence 45556555
No 267
>KOG0774|consensus
Probab=52.67 E-value=1.6e+02 Score=30.37 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHhhhccCchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 182 QATLKFLDLAR-----------QMEAFFLQKRFLLSALKPELIVKEDIVDLR-HDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 182 q~tnRFLD~AR-----------QLE~FFLQKrlllSa~KPe~vvKEEI~dLK-~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
...-||+|+.| -|-.||+ -++.+.+..+++ |+|+..-+ ..+.+-.+|+-+ ++|+.-+++.+.+
T Consensus 180 iLr~r~ldarRKRRNFsK~aTeiLneyF~--~h~~nPYPSee~-K~eLAkqCnItvsQvsnwfgn--krIrykK~~~k~~ 254 (334)
T KOG0774|consen 180 ILRSRFLDARRKRRNFSKQATEILNEYFY--SHLSNPYPSEEA-KEELAKQCNITVSQVSNWFGN--KRIRYKKNMGKNQ 254 (334)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHH--HhcCCCCCcHHH-HHHHHHHcCceehhhcccccc--ceeehhhhhhhhh
Confidence 34456666654 3556787 334444444444 54443321 224444555532 3444445554444
No 268
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=52.60 E-value=4.6 Score=41.18 Aligned_cols=143 Identities=18% Similarity=0.204 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHhHHhHHHHhhh
Q psy10214 84 LKFLDLARQMEAFFLQKRFLLSAL-KPELIVKEVNMVTKDIVDLRHDLARKEELIKRH--YDKIAVWQNLLSDLQSCLQV 160 (415)
Q Consensus 84 ~kFid~Arq~E~fFLqkr~~ls~~-kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh--y~KIavWqnLlsdfQscLs~ 160 (415)
..|-.+.+.++.||..+....... +-..+.+. +.+.+.++++.+.+.++.+.+. .++...|.+++.+....+..
T Consensus 275 ~~f~s~~~ald~yf~~~~~~~~~~~~~~~l~k~---l~~~~~klek~l~~l~~~~~~~~~~~~~~~~gelL~a~~~~i~~ 351 (455)
T PF05833_consen 275 KEFDSFNEALDEYFSEKEEEERLEQKKKRLEKK---LEKKIKKLEKKLEKLEEELEESEKAENYREYGELLLANLHQIKK 351 (455)
T ss_dssp EE-SSHHHHHHHHT------------------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC
Confidence 355566667778876543222111 11122222 2223333333333333222211 13445566666666555543
Q ss_pred hhcccccccccc-hhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 161 LTKEDEVSTTLE-KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHY 236 (415)
Q Consensus 161 LSkqE~ser~~D-qdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~ 236 (415)
-.+...+....+ ..++++.++ .-+.+....+.||=+++- + .. -...++..+.+++.+++..++++....
T Consensus 352 g~~~~~l~~~~~~~~~i~I~Ld----~~~s~~eNA~~yf~k~kK-~-k~-k~~~~~~~i~~~~~el~~l~~~~~~l~ 421 (455)
T PF05833_consen 352 GMKWVELEDFYEEGEEIEIPLD----PSLSPSENAQKYFKKYKK-L-KR-KIEKLEERIEEAEKELEYLESKLEQLE 421 (455)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCEEEhhhhhccCCceEEEEC----CCCCHHHHHHHHHHHHHH-H-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222212211111 234444444 223555677778875431 1 11 112335556666666655555554433
No 269
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=52.34 E-value=1.1e+02 Score=30.36 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHH
Q psy10214 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEA 95 (415)
Q Consensus 60 ~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~ 95 (415)
-+.++.-|-..|.++++..++++-..+..+..+++.
T Consensus 69 ~VkkGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~ 104 (346)
T PRK10476 69 AVKKGDLLFRIDPRPYELTVAQAQADLALADAQIMT 104 (346)
T ss_pred EEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777888888888888777666665555554
No 270
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=52.34 E-value=1.8e+02 Score=34.21 Aligned_cols=128 Identities=13% Similarity=0.235 Sum_probs=70.0
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHH---hhhhhcccccccccchhhHhHhHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSC---LQVLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQsc---Ls~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
+....|+++|=.+|.++-..|.+.. |+|..+|+++..-|+-++..+ ++-+.+. -+.+|++..+
T Consensus 356 ~~l~~il~~~~~~r~~~~~rr~~~~-----l~k~~~r~~i~eGl~~a~~~id~vi~~ir~s------~~~~~a~~~l--- 421 (957)
T PRK13979 356 MGLKTMLKHYVEHQKEVVTRRTKKE-----LEIAEKRFHIVEGFIKAIGIMDEIIKTIRSS------KSKKDASENL--- 421 (957)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC------CCHHHHHHHH---
Confidence 4668899998888888877766544 445555555555555444322 2222111 1334444333
Q ss_pred HHHHHHH-HHHHHHHHHHHHH-hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 184 TLKFLDL-ARQMEAFFLQKRF-LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 184 tnRFLD~-ARQLE~FFLQKrl-llSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+.+| +. ..|.|.. |..++ .++.+- ..-+++|..+|..++++.+.+|....+..+.-+.-|.++..
T Consensus 422 ~~~f-~~s~~qa~aI-l~mrL~~Lt~le-~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~ 488 (957)
T PRK13979 422 IEKF-GFTDEQAEAI-LELMLYRLTGLE-IVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKE 488 (957)
T ss_pred HHHh-CCCHHHHHHH-HhCcHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2333 11 1222221 21111 122222 22447788888888888888888877777777777766643
No 271
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=52.32 E-value=2.3e+02 Score=27.38 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 218 IVDLRHDLARKEELIKRHYDKIAVWQNL 245 (415)
Q Consensus 218 I~dLK~ELqRKErLIqKh~eKIeeWQsv 245 (415)
+.+|..=+.++|.-+...+-|...|...
T Consensus 204 ~~~lq~li~e~d~~l~~~~~~~~~~~e~ 231 (234)
T cd07652 204 VKDLFDLILEIDAALRLQYQKYALPNEL 231 (234)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 4555556666788888888888888654
No 272
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=52.31 E-value=4.3e+02 Score=30.61 Aligned_cols=78 Identities=24% Similarity=0.180 Sum_probs=46.9
Q ss_pred hHHHHHHHHH-----HHHHHHHH-HHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q psy10214 78 EIDQATLKFL-----DLARQMEA-FFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLL 151 (415)
Q Consensus 78 ~veq~~~kFi-----d~Arq~E~-fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLl 151 (415)
.|+.-|..|= ..|.+.|- |=|++-..--..=-+..-+|+|.-.++++.|-..+..|+..|+.....+..-++--
T Consensus 191 niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~ 270 (786)
T PF05483_consen 191 NIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKC 270 (786)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 3444444444 44555565 34444444333333445566777778888888888888887777776665555555
Q ss_pred HhHH
Q psy10214 152 SDLQ 155 (415)
Q Consensus 152 sdfQ 155 (415)
..|+
T Consensus 271 ~qLe 274 (786)
T PF05483_consen 271 NQLE 274 (786)
T ss_pred HHHH
Confidence 5554
No 273
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=52.22 E-value=3.8e+02 Score=29.91 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIK 233 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIq 233 (415)
+.+.+|.+|++|+++++++++
T Consensus 368 ~~k~~ie~L~~el~~~e~~lq 388 (546)
T PF07888_consen 368 ADKDEIEKLSRELQMLEEHLQ 388 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 446789999999988888773
No 274
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=52.21 E-value=2.2e+02 Score=27.18 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQN 244 (415)
Q Consensus 192 RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQs 244 (415)
...+.-||+..+..+..+-+ +++--++-+..++++.+..+....+.|..+..
T Consensus 162 l~~~~~~le~el~s~~~rq~-L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 162 LEAQIEMLEQELLSNNNRQE-LLQLQRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777666554433333 44656777777777777777777766666443
No 275
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.15 E-value=2.2e+02 Score=27.29 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=39.4
Q ss_pred hhhHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy10214 72 KDEIKLEID-QATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNL 150 (415)
Q Consensus 72 k~E~~~~ve-q~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnL 150 (415)
.||+-..+- -++.+|.++-+.+++|+-.-+- .-+.++.. -+...++|-=+.=.-.||.|+|. |++.
T Consensus 53 dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~-----q~~~~l~~------pL~~F~k~Dl~~vKe~kK~FdK~--s~~y 119 (202)
T cd07606 53 DDPISVAVGGPVMTKFTSALREIGSYKEVLRS-----QVEHMLND------RLAQFADTDLQEVKDARRRFDKA--SLDY 119 (202)
T ss_pred CChHHHhccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 355544322 3688999999999999643221 12222222 33333333333333567788876 5555
Q ss_pred HHhHHHH
Q psy10214 151 LSDLQSC 157 (415)
Q Consensus 151 lsdfQsc 157 (415)
..++...
T Consensus 120 d~al~K~ 126 (202)
T cd07606 120 EQARSKF 126 (202)
T ss_pred HHHHHHH
Confidence 5555433
No 276
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=52.01 E-value=77 Score=33.64 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=23.0
Q ss_pred hHHHHhhhhchhHHHHHHHHHHHHHHH-HHHhhh
Q psy10214 110 ELIVKEVNMVTKDIVDLRHDLARKEEL-IKRHYD 142 (415)
Q Consensus 110 e~i~ke~n~~~~di~eLR~ElaRKnaL-Lrkhy~ 142 (415)
..|+++|=.+|.++-..|.+..-+.+. .+.|..
T Consensus 326 ~~iL~~f~~~R~~~~~rR~~~~l~k~~~~r~~~~ 359 (445)
T smart00434 326 KEILKEFLDHRLEVYTRRKEYLLGKLEAERLHIL 359 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999888888888888876555544 444444
No 277
>KOG1451|consensus
Probab=52.00 E-value=4.2e+02 Score=30.41 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=44.1
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaR 132 (415)
+.||| -|-.+...|-.+-+++|+ +|+.|...-.|.+|+-.-+||+|-.---+|.-+
T Consensus 77 tdde~--~ia~slkefa~ll~~ve~----er~~~v~~Ase~li~PlekFRkEqIG~~KE~Kk 132 (812)
T KOG1451|consen 77 TDDEI--FIATSLKEFASLLNQVED----ERMRMVGNASESLIEPLEKFRKEQIGTLKEEKK 132 (812)
T ss_pred cchHH--HHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHhHHHHHHHHHhhhhHHHHh
Confidence 34554 467889999999999997 789999999999999888888887665444433
No 278
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=51.95 E-value=2.1e+02 Score=26.95 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy10214 230 ELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 230 rLIqKh~eKIeeWQsvL~dlq~ 251 (415)
..|.-.+..+.+--.+|+..-+
T Consensus 195 ~~isaALgyvahlv~lls~yL~ 216 (302)
T PF10186_consen 195 EEISAALGYVAHLVSLLSRYLG 216 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555556666666666544
No 279
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=51.61 E-value=3.2e+02 Score=29.32 Aligned_cols=34 Identities=12% Similarity=0.387 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~d 248 (415)
++|+.+++.|++..+.++....+..+.|..-|++
T Consensus 411 ~~E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL~~ 444 (445)
T cd00187 411 LKELKELEAEIEDLEKILASEERPKDLWKEELDE 444 (445)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 4455555555555555555555555667666654
No 280
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=51.34 E-value=78 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.603 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
..+|..|+.++++|.++|.++.+++
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999876
No 281
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=51.32 E-value=1.6e+02 Score=25.24 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=22.2
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhh
Q psy10214 118 MVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQV 160 (415)
Q Consensus 118 ~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~ 160 (415)
.+...-..|+..+..+...|+..+.....++++.+ +..++..
T Consensus 83 ~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~ 124 (213)
T cd00176 83 ELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEE 124 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33334455555566666666666655545544444 5555543
No 282
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=51.31 E-value=2.1e+02 Score=26.74 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=20.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHH
Q psy10214 83 TLKFLDLAR-QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130 (415)
Q Consensus 83 ~~kFid~Ar-q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~El 130 (415)
+.|.|+-|+ .+|++.-.-|-.+ ++=+.|+.+ =|+-|=.+|+++
T Consensus 7 i~~~Ie~aQkkvE~~nf~~Rk~l--leyD~Vl~~---QR~~IY~~R~~i 50 (214)
T PF07516_consen 7 ISKSIEKAQKKVEGRNFDIRKNL--LEYDDVLNQ---QRKVIYKQRDKI 50 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHH---HHHHHHHHHHHH
Confidence 445555553 4566555544444 444455443 333444444443
No 283
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.12 E-value=1.6e+02 Score=25.17 Aligned_cols=35 Identities=6% Similarity=0.133 Sum_probs=24.3
Q ss_pred hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 110 ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 110 e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
+.++.+|+.++.++..+...+...+.-+++|..=+
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~ 40 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKAL 40 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777776665433
No 284
>PLN03184 chloroplast Hsp70; Provisional
Probab=51.02 E-value=1e+02 Score=34.06 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 189 DLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 189 D~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
+.-..+|.|.+..+-++..++ +.+..+|..+|+..|++-++||..+
T Consensus 566 eakN~lE~~iy~~r~~l~e~~-~~~~~eer~~l~~~l~~~e~wL~~~ 611 (673)
T PLN03184 566 DTKNQADSVVYQTEKQLKELG-DKVPADVKEKVEAKLKELKDAIASG 611 (673)
T ss_pred HHHHhHHHHHHHHHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHHhcC
Confidence 333468888887777775322 2355778888888999999998754
No 285
>KOG0971|consensus
Probab=50.91 E-value=5.2e+02 Score=31.13 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHHhhhccCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 197 FFLQKRFLLSALKPEL-IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 197 FFLQKrlllSa~KPe~-vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
-.+..|-++++.|.+- -+..|....+.|+....+.-++..++++...+.+.|++-
T Consensus 383 alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 383 ALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444332 234467777778888888888888888888888888854
No 286
>KOG4438|consensus
Probab=50.77 E-value=3.7e+02 Score=29.35 Aligned_cols=40 Identities=18% Similarity=0.436 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhh--------------hHHHHHHHhHHhHHHHhhhhhcc
Q psy10214 125 DLRHDLARKEELIKRHY--------------DKIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 125 eLR~ElaRKnaLLrkhy--------------~KIavWqnLlsdfQscLs~LSkq 164 (415)
+|+.-+.+++.+|.+.. +|++-.+.+..+|+.|+.-|+..
T Consensus 245 KL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~ 298 (446)
T KOG4438|consen 245 KLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSD 298 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555443 37777788888888888877554
No 287
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=50.72 E-value=1.1e+02 Score=34.69 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
++.+-+..|+..=--+++.+++|.+|-++..-.
T Consensus 312 ~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~ 344 (784)
T PRK10787 312 DLRQAQEILDTDHYGLERVKDRILEYLAVQSRV 344 (784)
T ss_pred cHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc
Confidence 666667777766667788888898888876543
No 288
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.48 E-value=2.4e+02 Score=27.11 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=59.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhH-HHHHHHHHHHHHHHHHH
Q psy10214 119 VTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEI-DQATLKFLDLARQMEAF 197 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~V-Eq~tnRFLD~ARQLE~F 197 (415)
+..|+.+|+.-+.|.=+.-++.++-....-.-..+|-..|..+.. .. .|++-+.+ ..++.+|.+.-+.+++|
T Consensus 6 ~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~------~~-dD~~~~a~gg~~l~kF~~~l~ei~~~ 78 (202)
T cd07606 6 LEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGG------GH-DDPISVAVGGPVMTKFTSALREIGSY 78 (202)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CC-CChHHHhccchHHHHHHHHHHHHHHH
Confidence 344888888877777777777666444444445555555555532 12 23333210 13567898888888887
Q ss_pred HHHHHHhhhc---cCchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 198 FLQKRFLLSA---LKPELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 198 FLQKrlllSa---~KPe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
+-...-.... ..-+..+++||.+.|..=.+-|+.-.+|
T Consensus 79 ~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~y 119 (202)
T cd07606 79 KEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDY 119 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6532222111 1123366777777665443333333333
No 289
>KOG2815|consensus
Probab=50.45 E-value=2.9e+02 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+-....|..+++.|-++|+ +.+++.|+...--+++
T Consensus 211 ~~~~~~l~~~~qkR~r~Lk--yl~~~~~~~y~~~~~k 245 (256)
T KOG2815|consen 211 QASVRGLRQEVQKRQRALK--YLARANRQRYVRTIKK 245 (256)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhCCcceeecccc
Confidence 5567888999999999997 6666667665544443
No 290
>KOG0368|consensus
Probab=50.38 E-value=1.9e+02 Score=36.33 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=60.8
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHh
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 153 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsd 153 (415)
|||..=| +.|++.|+++.=+..-+-.|+. ..+-.| +..++++.|...++.|-..|.-|++=
T Consensus 1993 ~IKfRre----~Lle~MrR~D~~y~~L~~~l~~---~~ls~~------~~~~l~kqLk~Re~~L~piY~Qisvq------ 2053 (2196)
T KOG0368|consen 1993 EIKFRRE----MLLEMMRRLDPTYIKLKSSLSE---AKLSPE------DRKDLQKQLKEREEQLLPIYNQISVQ------ 2053 (2196)
T ss_pred EEEeeHH----HHHHHHHhcchhhhhhhhhcCc---cccChH------HHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4555444 7899999999887776666544 223334 45677788877777777777766432
Q ss_pred HHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHH----HHHHHHHHHHHHhh
Q psy10214 154 LQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLA----RQMEAFFLQKRFLL 205 (415)
Q Consensus 154 fQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~A----RQLE~FFLQKrlll 205 (415)
|-++ -|.+.||..+--|+.++|-..-|-+-+- +-.|.+.+++....
T Consensus 2054 FAdl------HDr~~RM~~kgVI~~~lew~~sRrffywrLrr~l~e~~~~~~i~~~ 2103 (2196)
T KOG0368|consen 2054 FADL------HDRSGRMKAKGVISKVLEWTESRRFFYWRLRRRLAEDQLLKEILSA 2103 (2196)
T ss_pred HHHh------hchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2111 1334466666666666663332222211 23344555554443
No 291
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=50.27 E-value=5.3 Score=42.09 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=13.6
Q ss_pred cChhHHHHhhhhchhHH-HHHHHHHHHHHHHHHHhhhHH
Q psy10214 107 LKPELIVKEVNMVTKDI-VDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di-~eLR~ElaRKnaLLrkhy~KI 144 (415)
..||+|-.- -.|+.++ ...-.+..||++..+|+++-+
T Consensus 62 a~pemi~~~-R~vta~Lf~RfTEdeeRKr~E~QKNkEAm 99 (468)
T PF11498_consen 62 ALPEMINAQ-RAVTAELFTRFTEDEERKRAEMQKNKEAM 99 (468)
T ss_dssp SHHHHHHHH-HHHHHHTHHHHHHHHHHHHH---------
T ss_pred hhHHHHhhh-hHHHHHHHHhhchHHHHHHHHHHhhHHHH
Confidence 457766543 1122222 233445677777777777744
No 292
>PF14063 DUF4254: Protein of unknown function (DUF4254)
Probab=50.24 E-value=58 Score=29.91 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=63.4
Q ss_pred CCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcChhHHHHhhhhchhHHHHHHHHHHHH
Q psy10214 62 PDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF--------LLSALKPELIVKEVNMVTKDIVDLRHDLARK 133 (415)
Q Consensus 62 ~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~--------~ls~~kpe~i~ke~n~~~~di~eLR~ElaRK 133 (415)
+..+.+....--.+|-.||..-++=-|+...+++||+.+=- .+.+--|-.+|-+.-++.-.+-..+.|+.|+
T Consensus 22 aR~~~i~~~~~~~~Kr~Id~~nq~R~dlve~iD~~~~~~~~~~~~~~~A~lnTEt~g~~iDRLsil~lki~hm~e~~~r~ 101 (145)
T PF14063_consen 22 ARRPDIDDEEIAACKRRIDKSNQERNDLVEAIDSWLLAELPPVSPRPDARLNTETPGWAIDRLSILNLKIYHMEEEIRRC 101 (145)
T ss_pred hhCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555555566677889999999999999999999995422 2333444455555444444555555666666
Q ss_pred HHHHHHhhh----HHHHHHHhHHhHHHHhhhhhcc
Q psy10214 134 EELIKRHYD----KIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 134 naLLrkhy~----KIavWqnLlsdfQscLs~LSkq 164 (415)
++= -.|+. |+.+..+=..+|..|+..|..+
T Consensus 102 d~d-~~h~~~~~~kl~vl~~qradL~~~i~~Ll~d 135 (145)
T PF14063_consen 102 DAD-GEHFIRCARKLYVLNEQRADLKRAIDQLLGD 135 (145)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 622 23333 5555556666666666666443
No 293
>KOG0161|consensus
Probab=50.13 E-value=6.6e+02 Score=32.16 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy10214 111 LIVKEVNMVTKDIVDLRHDLARKEELI 137 (415)
Q Consensus 111 ~i~ke~n~~~~di~eLR~ElaRKnaLL 137 (415)
-+-+|+|-....|.+|+.|++..++.+
T Consensus 954 k~~~Ek~~~e~~~~~l~~e~~~~~e~~ 980 (1930)
T KOG0161|consen 954 KLELEKNAAENKLKNLEEEINSLDENI 980 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888855433
No 294
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.04 E-value=3e+02 Score=28.12 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q psy10214 123 IVDLRHDLARKEELIKRHYDK 143 (415)
Q Consensus 123 i~eLR~ElaRKnaLLrkhy~K 143 (415)
+..|+..|.+.-+.++..+..
T Consensus 142 legLk~~L~~~~~~l~~D~~~ 162 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKL 162 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666653
No 295
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.97 E-value=1.6e+02 Score=26.40 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy10214 185 LKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGW 252 (415)
Q Consensus 185 nRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~ 252 (415)
...++.-+++|.+.--....+ ..+++||......+++-.+-|+...+++..|.+...+...-
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l------~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQL------ELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677777554222222 25688888888888888888888888888888888888653
No 296
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.97 E-value=1.6e+02 Score=27.33 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 211 ELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 211 e~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
|+-+...|..|+.|++.+|..|+.+.+++....+.|..+-
T Consensus 24 hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 24 HQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444668999999999999999999999999888887773
No 297
>PRK10869 recombination and repair protein; Provisional
Probab=49.97 E-value=3.7e+02 Score=29.21 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=18.2
Q ss_pred HHHHHhhhHHHHHHHhHHhHHHHhhhhh
Q psy10214 135 ELIKRHYDKIAVWQNLLSDLQSCLQVLT 162 (415)
Q Consensus 135 aLLrkhy~KIavWqnLlsdfQscLs~LS 162 (415)
+.|...+.++.....+.++++.++..|.
T Consensus 208 eeL~~e~~~L~n~e~i~~~~~~~~~~L~ 235 (553)
T PRK10869 208 EQIDEEYKRLANSGQLLTTSQNALQLLA 235 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3355555566777777777777777773
No 298
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=49.85 E-value=2.7e+02 Score=27.51 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q psy10214 225 LARKEELIKRHYDKIAVWQNLLSDLQGWAKSPAHQ 259 (415)
Q Consensus 225 LqRKErLIqKh~eKIeeWQsvL~dlq~~~~spaq~ 259 (415)
+..-..-+.....+++..+..++... .++|..|
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~~~--i~AP~dG 280 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQRLI--IRSPVDG 280 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcE--EECCCCc
Confidence 33333344444444444444444332 5566655
No 299
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=49.78 E-value=3.2e+02 Score=28.43 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcChh---------HHHHhhhhchhHHHHHHHHHHHHHHHHH---Hh--hhHHHHHHHhHHhHHHH
Q psy10214 92 QMEAFFLQKRFLLSALKPE---------LIVKEVNMVTKDIVDLRHDLARKEELIK---RH--YDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe---------~i~ke~n~~~~di~eLR~ElaRKnaLLr---kh--y~KIavWqnLlsdfQsc 157 (415)
.+++|.-++..+-+..... .+-.+.......+..++.++...+.++. +. +..-+.+..+...+.+.
T Consensus 141 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (457)
T TIGR01000 141 LFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQ 220 (457)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q ss_pred hhhhhcc---------cccccccchhhHhHhHHHHHHHHHHH------------HHHHHHHHHHHHHhhhccCchhhhHH
Q psy10214 158 LQVLTKE---------DEVSTTLEKDEIKLEIDQATLKFLDL------------ARQMEAFFLQKRFLLSALKPELIVKE 216 (415)
Q Consensus 158 Ls~LSkq---------E~ser~~DqdEIKv~VEq~tnRFLD~------------ARQLE~FFLQKrlllSa~KPe~vvKE 216 (415)
+..+... +...-..+.++++..+.....+.-.. -..++..+-+.+. .+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~ 291 (457)
T TIGR01000 221 LKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLA---------KVKQ 291 (457)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHH---------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIA 240 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIe 240 (415)
++.+++.+++..+.-++....+++
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 300
>PRK14127 cell division protein GpsB; Provisional
Probab=49.75 E-value=30 Score=30.57 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDKIA 145 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~KIa 145 (415)
.+++.+|+.|++|.++.|...-.++.
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34677888888888877766655554
No 301
>KOG2148|consensus
Probab=49.70 E-value=3.2e+02 Score=31.63 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10214 83 TLKFLDLARQMEAFFL 98 (415)
Q Consensus 83 ~~kFid~Arq~E~fFL 98 (415)
|-||-..|+.+|.+|-
T Consensus 648 v~rFenfa~raE~if~ 663 (867)
T KOG2148|consen 648 VFRFENFARRAEIIFE 663 (867)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5688888999999886
No 302
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=49.68 E-value=2.5e+02 Score=27.05 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=51.5
Q ss_pred CchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhH
Q psy10214 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDK 143 (415)
Q Consensus 70 ~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~K 143 (415)
...++|.-+-+..+.+|-.---.++.=|++++-.++.++.+.-..+ ++..+|....++=.-|++...+
T Consensus 29 ~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~------~~~~~k~~qe~eI~~Le~e~~~ 96 (206)
T PF14988_consen 29 QQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK------EFRRLKEQQEREIQTLEEELEK 96 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888999988888899999999999988888876666 6666666655555555555553
No 303
>KOG1029|consensus
Probab=49.61 E-value=5.1e+02 Score=30.70 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy10214 127 RHDLARKEELIKR 139 (415)
Q Consensus 127 R~ElaRKnaLLrk 139 (415)
.+|..||.++.++
T Consensus 386 qrEEerkkeie~r 398 (1118)
T KOG1029|consen 386 QREEERKKEIERR 398 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 304
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=49.54 E-value=3.2e+02 Score=31.26 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=62.0
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKF 187 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRF 187 (415)
....|++||=.+|.++-..|.+ -.|.+...++++..-|+-++-++=..+ .+.|- .+|.+.. .+.+|
T Consensus 338 ~l~~il~~~~~~R~~~~~rR~~-----~~l~k~~~rl~il~Gl~ia~~~iDevI----~iIR~--s~~~k~~---L~~~f 403 (735)
T TIGR01062 338 NLLEILQEWLVFRRNTVIRRLT-----YRLNKVLQRLHILEGLRIAFLNIDEVI----EIIRE--EDEPKTI---LMERF 403 (735)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHc--ChhhHHH---HHHhc
Confidence 4578999998888777766544 455555566666555555554332221 00011 1222222 22333
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 188 LDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 188 LD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
==--.|.|. -|..|+..=+.=.+.-+++|.++|..|+++.+.+|....+. |+-+.++|
T Consensus 404 ~ls~~Qaea-IL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~~~~---~~~i~~el 461 (735)
T TIGR01062 404 KLSAIQAEA-ILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKSEREL---NQLVKKEI 461 (735)
T ss_pred CCCHHHHHH-HHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHH
Confidence 100022222 23222221111123345778888888888888888665544 44444444
No 305
>KOG2572|consensus
Probab=49.47 E-value=2.2e+02 Score=31.08 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhH---H--HHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH
Q psy10214 81 QATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKD---I--VDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155 (415)
Q Consensus 81 q~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~d---i--~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ 155 (415)
++..||-+.|-.+|++=.=-+=.+|. .-+-+++. |. .++ + .+|=+-|.+| |..+-.-.+.+++|.-.+.
T Consensus 45 ~~f~kf~~ta~alea~~~l~eGkvs~-~L~k~lk~-~~-~~etLaVaD~KLgn~i~ek---L~~~~v~~~~v~el~RgiR 118 (498)
T KOG2572|consen 45 VAFEKFDSTAEALEAVTALAEGKVSS-GLEKFLKL-NK-KKETLAVADAKLGNAIKEK---LSINCVHDSAVMELLRGIR 118 (498)
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCcch-hHHHHHHh-hc-cCCeeeeccHHHhHHHHHh---hcceeecchhHHHHHHHHH
Confidence 45678888888888874311111110 01112222 11 000 0 1222222222 4444445677788899999
Q ss_pred HHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 156 SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 156 scLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
+|+..|..- + +..|+- ..-|..|-.+-. ..+++|.-|-+.++ -.--.=|+..|+-|..|
T Consensus 119 s~l~el~~g-----~-~~~dl~-------~msLglaHslar----~Klkfs~dKvDtmI----iQaisLLDDLDkeLNtY 177 (498)
T KOG2572|consen 119 SQLTELISG-----L-NDSDLA-------AMSLGLAHSLAR----YKLKFSPDKVDTMI----IQAISLLDDLDKELNTY 177 (498)
T ss_pred HHHHHHhcc-----C-Chhhhh-------HHHHHHHHHHHh----hhcccCcchhhHHH----HHHHHHHHhHHHHHHHH
Confidence 999987441 1 111221 111222222222 23456655555442 22223356777778888
Q ss_pred HHHHHHHH
Q psy10214 236 YDKIAVWQ 243 (415)
Q Consensus 236 ~eKIeeWQ 243 (415)
..|+.+|-
T Consensus 178 ~mRvrEwY 185 (498)
T KOG2572|consen 178 AMRVKEWY 185 (498)
T ss_pred HHHHHHHH
Confidence 88888886
No 306
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.37 E-value=4.5e+02 Score=29.97 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQ 243 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQ 243 (415)
+..++|..|+.+|.+++.-+....+|++.-.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888877777744
No 307
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=49.36 E-value=2.1e+02 Score=30.68 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=43.7
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAF---FLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~f---FLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
.+.++..+.|..+.|+=||=--||+. -.++|..-+..+-|.|.+|.+.+++++.+++.-+.+-.-..+|.|+
T Consensus 207 ~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE 281 (424)
T PF03915_consen 207 GKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWE 281 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 46677777777788877777777775 3566666666666666666666666666666655555555554444
No 308
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.19 E-value=52 Score=30.41 Aligned_cols=41 Identities=17% Similarity=0.019 Sum_probs=32.3
Q ss_pred HHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 102 FLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 102 ~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
..|+.-+++.+-+-.++|.++..+||.+|.-|++.|+-.+.
T Consensus 42 ~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~ 82 (143)
T PRK11546 42 APLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLT 82 (143)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34667777777777788899999999999999888776655
No 309
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=48.74 E-value=1.3e+02 Score=28.99 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q psy10214 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQME 94 (415)
Q Consensus 60 ~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E 94 (415)
-+.++.-|-..|..+.+..++++-...-.+..+++
T Consensus 63 ~V~kGq~L~~ld~~~~~~~l~~a~a~l~~~~~~~~ 97 (334)
T TIGR00998 63 YVKQGDVLVRLDPTNAELALAKAEANLAALVRQTK 97 (334)
T ss_pred EEcCCCEEEEECchHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788889988888877766655554443
No 310
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.68 E-value=2.6e+02 Score=27.09 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhccCc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 193 QMEAFFLQKRFLLSALKP-----ELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 193 QLE~FFLQKrlllSa~KP-----e~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
.+|.+|=.+.-.++.... -..+++|+.+++..++....=|.....+.+.-...+.+++
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 677777655433322110 1133666666666666555555555555555444444443
No 311
>PF05635 23S_rRNA_IVP: 23S rRNA-intervening sequence protein; InterPro: IPR008815 This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes[]. The function of these proteins is not known, but a structural study indicates that each momonmer folds into an antiparallel four-helix bundle, while the overall protein is a homopentamer with a toroid-shaped structure containing a tapered central channel [].; PDB: 2GSC_E 2RLD_D.
Probab=48.68 E-value=1.2e+02 Score=25.33 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=10.4
Q ss_pred HhhhHHHHHHHhHHhHHHHhh
Q psy10214 139 RHYDKIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 139 khy~KIavWqnLlsdfQscLs 159 (415)
+.|+++.+|+...+-...+..
T Consensus 1 ~~f~~L~v~q~a~~l~~~i~~ 21 (110)
T PF05635_consen 1 KDFEKLEVWQKAMELALEIYE 21 (110)
T ss_dssp -CGGG-HHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHH
Confidence 346777788754444433333
No 312
>PF14992 TMCO5: TMCO5 family
Probab=48.64 E-value=3.2e+02 Score=28.04 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH
Q psy10214 121 KDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf 154 (415)
+.|..|-+|+++-+.++.+.-+.-....|-..||
T Consensus 32 ~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l 65 (280)
T PF14992_consen 32 GAIQSLEREITKMDHIADRSEEEDIISEERETDL 65 (280)
T ss_pred HHHHHHHHHHHHHccccCchhHHhhhhhchHHHH
Confidence 4555556666665555554433222224444455
No 313
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=48.56 E-value=3.4e+02 Score=28.30 Aligned_cols=49 Identities=10% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHH
Q psy10214 145 AVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEA 196 (415)
Q Consensus 145 avWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~ 196 (415)
...+++.+.|...+..+...+. .+.|..+. ..-+.+..+|-+....+|.
T Consensus 264 ~~~~~i~~~~~~~~~~~~~~~y--d~ld~~~~-~~w~~~~~~f~~~i~~lE~ 312 (579)
T PF08385_consen 264 EGIDEIEEEFNEAYEPFKSLDY--DILDVSNE-EEWERDFSEFRERIEDLER 312 (579)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--CcCCCcch-hhHHHHHHHHHHHHHHHHH
Confidence 3556777788888877754331 12222222 1223455566555555554
No 314
>PLN03128 DNA topoisomerase 2; Provisional
Probab=48.38 E-value=1.8e+02 Score=34.86 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDK--IAVWQNLLSDLQ 250 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eK--IeeWQsvL~dlq 250 (415)
+.++++++|..|++.++..|+..... .+-|..-|+.++
T Consensus 1092 LT~e~~~kL~~e~~~~~~ei~~l~~~t~~~~w~~DLd~~~ 1131 (1135)
T PLN03128 1092 LTLEKVDELRAERAKKETEVEELKKTTPEDLWRKDLDAFE 1131 (1135)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999998875543 455988888775
No 315
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=48.36 E-value=2.8e+02 Score=27.39 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhHHhHHHHhhhhhcc
Q psy10214 86 FLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE-ELIKRHYDKIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 86 Fid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn-aLLrkhy~KIavWqnLlsdfQscLs~LSkq 164 (415)
|-+-|--+-+||.| +..++......-+|.-.-+...+++=+|-.+++ +++. .-+++.+.+..|=.+|..|
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~----dDe~i~~~L~kFs~~L~El--- 77 (215)
T cd07631 7 FEEDAAAISNYFNQ--LFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGG----DDEVMSSTLQQFSKVIDEL--- 77 (215)
T ss_pred HHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC----CcHHHHHHHHHHHHHHHHH---
Q ss_pred cccccccchhhHhHhHHHHHHHHHHHH------------HHHHHHHH--HHHHhhhccCchhhhHH-HHHHHHHHHHHHH
Q psy10214 165 DEVSTTLEKDEIKLEIDQATLKFLDLA------------RQMEAFFL--QKRFLLSALKPELIVKE-DIVDLRHDLARKE 229 (415)
Q Consensus 165 E~ser~~DqdEIKv~VEq~tnRFLD~A------------RQLE~FFL--QKrlllSa~KPe~vvKE-EI~dLK~ELqRKE 229 (415)
..++..=.+.+...+-+.+.+|++.- |..|.|-. .|.+.+|..|++.++++ +-+++...-..-.
T Consensus 78 -~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~ 156 (215)
T cd07631 78 -SSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQH 156 (215)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q psy10214 230 ELIKRHYDKIAVWQN 244 (415)
Q Consensus 230 rLIqKh~eKIeeWQs 244 (415)
.+...|.-+|..-++
T Consensus 157 ~~aLdYv~qLn~lQ~ 171 (215)
T cd07631 157 QTMMHYFCALNTLQY 171 (215)
T ss_pred HHHHHHHHHHHHHHH
No 316
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=48.33 E-value=2.7e+02 Score=27.10 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhhccCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 180 IDQATLKFLDLARQMEAFFLQK--RFLLSALKP-ELIVKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 180 VEq~tnRFLD~ARQLE~FFLQK--rlllSa~KP-e~vvKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
|..++.+|.+.-..+++|.--. +...+-..| +..++++|.+.|..-.+-|+.-.+|..-++.
T Consensus 65 i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k 129 (207)
T cd07602 65 IAESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEK 129 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578889998888888865411 111111112 2355777776666655555555555444443
No 317
>KOG2908|consensus
Probab=48.32 E-value=1.9e+02 Score=30.73 Aligned_cols=90 Identities=16% Similarity=0.286 Sum_probs=51.0
Q ss_pred HHHHHHHhHHhHHHHhhhhhccc----ccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHH
Q psy10214 143 KIAVWQNLLSDLQSCLQVLTKED----EVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDI 218 (415)
Q Consensus 143 KIavWqnLlsdfQscLs~LSkqE----~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI 218 (415)
++..+.|+.+.|..-+++|+..+ -++++.|.+++=.-.|+.++++..+.-- |.+- .+..+|
T Consensus 57 ~l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~-~av~--------------~~~t~~ 121 (380)
T KOG2908|consen 57 LLQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEP-DAVI--------------YILTEI 121 (380)
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccc-hhHH--------------HHHHHH
Confidence 57788888888887777765543 1223456666655555555555443211 1100 113344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 219 VDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 219 ~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
..++.++-. +..++++|++|+++|+.+-+
T Consensus 122 ~r~~L~i~D----Lk~~kk~ldd~~~~ld~~~~ 150 (380)
T KOG2908|consen 122 ARLKLEIND----LKEIKKLLDDLKSMLDSLDG 150 (380)
T ss_pred HHHHHhccc----HHHHHHHHHHHHHHHhcccC
Confidence 445543322 34677788888888887754
No 318
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=48.30 E-value=3.4e+02 Score=29.36 Aligned_cols=136 Identities=18% Similarity=0.297 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCCchhhHhH-------hHHHHHHHHHHHHHHHHHHHHHHHH----HHhh-cChhHHHHhhhhc-------
Q psy10214 59 IGLPDGRSLSPLEKDEIKL-------EIDQATLKFLDLARQMEAFFLQKRF----LLSA-LKPELIVKEVNMV------- 119 (415)
Q Consensus 59 ~~~~~~~~~~~~~k~E~~~-------~veq~~~kFid~Arq~E~fFLqkr~----~ls~-~kpe~i~ke~n~~------- 119 (415)
.+++++-.+....||.|-- ++|..-..|..|---.=-|-.-.|+ .+|. .|+| =+||.|+.
T Consensus 82 ~NLtkeLN~t~~~K~~imq~ll~~rrdl~rinasfrQcq~d~i~y~n~~Ry~aAIi~sekqc~e-qLke~Nksc~al~~~ 160 (442)
T PF06637_consen 82 ANLTKELNLTTRAKDAIMQMLLNARRDLDRINASFRQCQADRIQYTNNQRYMAAIILSEKQCQE-QLKEINKSCNALLLM 160 (442)
T ss_pred hHHHHHhchhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHhhhhH-HHHHhhhhHHHHHHH
Confidence 3555666666666666543 5555555555532111112122232 2232 3444 57887873
Q ss_pred -hhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhHHhHHHHhh--------------hhhcccccccccchhhHhHhHHHH
Q psy10214 120 -TKDIVDLRHDLARKEELIKRHYDKIAVWQ-NLLSDLQSCLQ--------------VLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 120 -~~di~eLR~ElaRKnaLLrkhy~KIavWq-nLlsdfQscLs--------------~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
...+..+.-|++++.+..-|..+.|..=+ ..++.+-.|.. .|.+.+.++...|+|-+.+++...
T Consensus 161 L~~k~Ktle~E~~kek~vctkdKE~ll~~kr~~e~Q~~~C~k~re~q~qe~QLae~~lq~vq~~C~pLDkdk~~~~l~~l 240 (442)
T PF06637_consen 161 LNQKAKTLEVELAKEKAVCTKDKEGLLLSKRQVEEQLEECGKAREQQQQERQLAEEQLQKVQALCLPLDKDKFETDLRNL 240 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 22334445555555555555544322111 11222223322 133334566677888777776655
Q ss_pred HHHHHHHHHHHHH
Q psy10214 184 TLKFLDLARQMEA 196 (415)
Q Consensus 184 tnRFLD~ARQLE~ 196 (415)
..+||- .|.+|+
T Consensus 241 WRDSii-~R~Ld~ 252 (442)
T PF06637_consen 241 WRDSII-PRSLDN 252 (442)
T ss_pred HHHHHH-hhhhhc
Confidence 555532 244554
No 319
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.26 E-value=1.8e+02 Score=29.85 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.+-++..++-.-|...|....+...-++.|..+|..++.
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~ 364 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEE 364 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888888888888889888888864
No 320
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=47.84 E-value=4.8e+02 Score=32.38 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=12.1
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHH
Q psy10214 72 KDEIKLEIDQATLKFLDLARQMEAFF 97 (415)
Q Consensus 72 k~E~~~~veq~~~kFid~Arq~E~fF 97 (415)
+.|....-+-.++||...+..-+.|+
T Consensus 837 e~~~~~~~~~L~~~~~rs~~~~kr~~ 862 (1463)
T COG5022 837 EVEFSLKAEVLIQKFGRSLKAKKRFS 862 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34444444455556644444444443
No 321
>KOG0994|consensus
Probab=47.77 E-value=6.4e+02 Score=31.30 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
.+.....|.+--|+++..--.+|.+-...++.|
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444443
No 322
>KOG2295|consensus
Probab=47.62 E-value=4.7e+02 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Q psy10214 230 ELIKRHYDKIAVWQNLLSDLQGWAK 254 (415)
Q Consensus 230 rLIqKh~eKIeeWQsvL~dlq~~~~ 254 (415)
-|-.||.+||++-.+.....++.+-
T Consensus 530 Hi~~KH~d~leeirkea~ffnnYl~ 554 (648)
T KOG2295|consen 530 HINKKHKDKLEEIRKEAIFFNNYLL 554 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556888899988888877777444
No 323
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=47.52 E-value=4.3e+02 Score=29.28 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhh--hccCchhhhHHHHHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLL--SALKPELIVKEDIVDLRHDL 225 (415)
Q Consensus 192 RQLE~FFLQKrlll--Sa~KPe~vvKEEI~dLK~EL 225 (415)
++++.+|-+...++ +..+-+.+.+|+|+-+..-+
T Consensus 446 ~~vdei~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~ 481 (590)
T COG5104 446 RAVDEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGL 481 (590)
T ss_pred cchHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHH
Confidence 46677776544433 34566678888888877653
No 324
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=47.50 E-value=2.7e+02 Score=26.89 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
.-++..-....+++..+|. |++++....-+-+.+...-+.+.+.-.+|...+.+....|+.-..
T Consensus 45 ~~~~~~e~~l~~L~~d~~~--L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~ 108 (264)
T PF06008_consen 45 QQLDPLEKELESLEQDVEN--LQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIE 108 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554 455555555566666655555555555555555555544444333
No 325
>KOG2701|consensus
Probab=47.49 E-value=4.2e+02 Score=30.01 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=59.5
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH---------HHHhhhhhcccccccccchhhHhHhHHHHHHHHH
Q psy10214 118 MVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL---------QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFL 188 (415)
Q Consensus 118 ~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf---------QscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFL 188 (415)
++-+++.+..++.-.+.+.|+....+...++.+++++ |.+++.+...++. ..--.|+++.+..+..+..
T Consensus 313 ~~~~e~~d~~~~~~~r~~e~~~r~~a~dk~~~~~~~~~~~~~~~~vq~li~l~~~~~e~--~sae~E~~~rc~~~~~nl~ 390 (608)
T KOG2701|consen 313 MFFDEEADSYNERKKREAELEYRLRALDKYQEFLESTSDERDPDFVQKLISLTQMEEEL--KSAEAEFKVRCRSDLANLQ 390 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3444556666665555555555555555555554443 3333333332221 1223456666666666665
Q ss_pred HHHHHHHHHHHHHHHhhhc-----cCchh------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 189 DLARQMEAFFLQKRFLLSA-----LKPEL------IVKEDIVDLRHDLARKEELIKRHYDK 238 (415)
Q Consensus 189 D~ARQLE~FFLQKrlllSa-----~KPe~------vvKEEI~dLK~ELqRKErLIqKh~eK 238 (415)
+.-++++.+=-+.+.+.+. +--+. ..+.....++.+|+|.-+-|.-+++|
T Consensus 391 ~qi~Dl~~~~~~~~~ke~n~re~~l~~~ek~~~~y~~~~~l~si~~~l~r~~reii~~~rK 451 (608)
T KOG2701|consen 391 DQIRDLKSPKAKRHDKETNIREEALDGHEKTLNSYGKLRLLESIRLRLARALREIISLRRK 451 (608)
T ss_pred HHHHhhhcccccchhhhhhHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543333333221 00001 11345666777777777777777777
No 326
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.35 E-value=3.9e+02 Score=28.68 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 79 IDQATLKFLDLARQMEAFFLQKRFLL 104 (415)
Q Consensus 79 veq~~~kFid~Arq~E~fFLqkr~~l 104 (415)
.|.++.+.-+-+..+..-|+++.+.+
T Consensus 167 ld~al~~~~~~~~~~~~~fl~rtl~~ 192 (511)
T PF09787_consen 167 LDEALKREDGNAITAVVEFLKRTLKK 192 (511)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 34444444444555556666665444
No 327
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=47.34 E-value=1.4e+02 Score=28.93 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=24.3
Q ss_pred hHhHHHHHHHH---HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q psy10214 177 KLEIDQATLKF---LDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKE 229 (415)
Q Consensus 177 Kv~VEq~tnRF---LD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKE 229 (415)
..|||...+.| +|.+-.+...|++. |+.+.+|..-|-|++
T Consensus 31 ~k~ve~lLd~sL~LLD~c~~~rd~ll~l-------------Ke~v~eLqsalRRr~ 73 (231)
T PF03087_consen 31 EKWVEELLDGSLRLLDACGTFRDALLQL-------------KEHVQELQSALRRRD 73 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhccc
Confidence 56777666655 66667777777733 445555555555555
No 328
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=47.11 E-value=2.8e+02 Score=30.87 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=38.2
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhc
Q psy10214 115 EVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 115 e~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSk 163 (415)
+.+.++..++.|++-+.+|++++..++.--++.+|.++-|-.....|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~n~~l~~sl~~~~~~~~~~~~ 135 (828)
T PRK13837 87 GDAELDQLLDRLKASVDRTDAAVEAFKSQNALLQNSLAYFNSLSSALPR 135 (828)
T ss_pred cchhHHHHHHHHHHhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Confidence 3455666788888888999999999988888888888888766666543
No 329
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=47.09 E-value=57 Score=32.07 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhh
Q psy10214 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs 159 (415)
|+|.+.|-+.+.+ ++..||.++.+.++.+++-..++...++++..|...|.
T Consensus 6 ~~~~~~ln~~~~~-----------------e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~Fs 56 (236)
T PF12017_consen 6 QTEECILNRTLKI-----------------ENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIFS 56 (236)
T ss_pred ccchHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5666666665544 33334444433333333333333333455556655555
No 330
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=46.96 E-value=49 Score=26.51 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLL 246 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL 246 (415)
.+.|..|+.||+|.+..+.+-........+++
T Consensus 27 ~~RIa~L~aEI~R~~~~~~~K~a~r~AAealF 58 (59)
T PF06698_consen 27 EERIALLEAEIARLEAAIAKKSASRAAAEALF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77899999999999988887766665555443
No 331
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=46.89 E-value=2.7e+02 Score=32.54 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=13.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 209 KPELIVKEDIVDLRHDLARKEELIKRHYD 237 (415)
Q Consensus 209 KPe~vvKEEI~dLK~ELqRKErLIqKh~e 237 (415)
|...++.-.++.=-+||.|..+|.+....
T Consensus 522 kEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 522 KENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555544444433
No 332
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=46.83 E-value=82 Score=24.73 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=20.7
Q ss_pred HHHhhhhchhHHHHHHHHHHHHHHHHH-Hhhh
Q psy10214 112 IVKEVNMVTKDIVDLRHDLARKEELIK-RHYD 142 (415)
Q Consensus 112 i~ke~n~~~~di~eLR~ElaRKnaLLr-khy~ 142 (415)
+-+|...+.+++.++.+++.+-+..|. .+|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~ 33 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFV 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 445666677778888888888776665 3444
No 333
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=46.77 E-value=3.8e+02 Score=28.44 Aligned_cols=60 Identities=20% Similarity=0.088 Sum_probs=30.5
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHH
Q psy10214 174 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIK 233 (415)
Q Consensus 174 dEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIq 233 (415)
.++...++++..+|=+.....|.-|-.+...+..--.+..++...+.-..-|+.-+.-.+
T Consensus 369 ~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~ee~L~~~l~~~~~~Ld~Ie~~Y~ 428 (473)
T PF14643_consen 369 EELEKRLEQCREKHDQENQEKEAKLDIALDRLRQASSEEKLKEHLEKALDLLDQIEEEYE 428 (473)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666677776666655554333333334333333333333333333
No 334
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.76 E-value=1.2e+02 Score=25.17 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHhHHhHHHH
Q psy10214 95 AFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRH---DLARKEELIKRHYDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 95 ~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~---ElaRKnaLLrkhy~KIavWqnLlsdfQsc 157 (415)
..+-++|-++ .+-|.+-.|.|.+|++|.++++ +....-+..+....+|.....-++.+...
T Consensus 33 ~ld~~~r~l~--~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 33 ELDQERRELQ--QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666 5567788888888888888877 34444444555455554444444444333
No 335
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=46.74 E-value=1e+02 Score=29.39 Aligned_cols=77 Identities=12% Similarity=0.236 Sum_probs=24.3
Q ss_pred cCCCCCCCCCC----CCchhhHhHhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHH
Q psy10214 58 NIGLPDGRSLS----PLEKDEIKLEIDQATLKFL-DLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 58 ~~~~~~~~~~~----~~~k~E~~~~veq~~~kFi-d~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaR 132 (415)
-+.-+||+.+- ..-.+.++.-|+.+...+= .+-+.|..-|-. +......- -+| ..+||.+|++|+++
T Consensus 67 WT~~AKER~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~r--L~~~Vd~~---~~e---L~~eI~~L~~~i~~ 138 (171)
T PF04799_consen 67 WTNKAKERAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFAR--LCQQVDQT---KNE---LEDEIKQLEKEIQR 138 (171)
T ss_dssp -------------------------------------------HHHH--HHHHHHHH---HHH---HHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH--HHHHHHHH---HHH---HHHHHHHHHHHHHH
Confidence 34556776643 3445667777777776665 455556666643 33322333 233 33399999999999
Q ss_pred HHHHHHHhhh
Q psy10214 133 KEELIKRHYD 142 (415)
Q Consensus 133 KnaLLrkhy~ 142 (415)
.|.+.++-..
T Consensus 139 le~~~~~~k~ 148 (171)
T PF04799_consen 139 LEEIQSKSKT 148 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988777666
No 336
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=46.27 E-value=2.6e+02 Score=26.44 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCCCchhhHhHhHHHHHH----HHHHHHHHHHHHHHHHHHH----------HhhcChhHHHHhhhhchhHHHHHHHHHHH
Q psy10214 67 LSPLEKDEIKLEIDQATL----KFLDLARQMEAFFLQKRFL----------LSALKPELIVKEVNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 67 ~~~~~k~E~~~~veq~~~----kFid~Arq~E~fFLqkr~~----------ls~~kpe~i~ke~n~~~~di~eLR~ElaR 132 (415)
..++.++.|..++|++++ +....-++++.|..+--.. +...-|+.|+.. -..+....+.+
T Consensus 15 ~~~~rP~~i~~t~e~~~d~~~~~l~~~~~qa~~y~~~~~~elR~qv~~l~~~l~~v~~lv~~~------~~~~~~~~~~~ 88 (208)
T PF14644_consen 15 RPITRPEMIPETFEQCADNLVQKLQSYQEQADEYHNSCLQELRNQVERLEELLPKVPELVFES------LLKRHWQKLCE 88 (208)
T ss_pred ccCCChhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 344667777777776654 3445566677777653222 224446666655 22233333333
Q ss_pred HHHHHHHhhh-HHHHHHHhHHhHHHHhhh
Q psy10214 133 KEELIKRHYD-KIAVWQNLLSDLQSCLQV 160 (415)
Q Consensus 133 KnaLLrkhy~-KIavWqnLlsdfQscLs~ 160 (415)
-..-++..+. +...|.+.-..-.+.|++
T Consensus 89 ~~~~i~~~f~~~~~~~~~~k~~h~~~LrP 117 (208)
T PF14644_consen 89 AMKAIQEEFEQQQKQWEQQKDQHEQQLRP 117 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3333333333 566777766666666653
No 337
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=46.24 E-value=2.9e+02 Score=26.93 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDK 143 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~K 143 (415)
|+..||+||+..+++|.+.-..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQA 118 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667888888888887765543
No 338
>KOG1029|consensus
Probab=45.95 E-value=5.8e+02 Score=30.29 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=6.5
Q ss_pred chhhHHhhccC
Q psy10214 397 PLAYLEKTTSN 407 (415)
Q Consensus 397 ~la~le~~tsn 407 (415)
|-+|.||..+|
T Consensus 743 PenyvEki~~~ 753 (1118)
T KOG1029|consen 743 PENYVEKIPAV 753 (1118)
T ss_pred cHHHHhhcccC
Confidence 55666665554
No 339
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=45.95 E-value=6.8 Score=43.02 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=0.0
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q psy10214 208 LKPELIVKEDIVDLRHDLARKEELIKRHYD----------KIAVWQNLLSDL 249 (415)
Q Consensus 208 ~KPe~vvKEEI~dLK~ELqRKErLIqKh~e----------KIeeWQsvL~dl 249 (415)
.+...++++++..|+..+.+-+.+-.++.+ ++..|.+++++.
T Consensus 280 ~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~ 331 (722)
T PF05557_consen 280 QENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDI 331 (722)
T ss_dssp ----------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345568899999999999998877766654 566698888775
No 340
>COG3679 Regulatory protein involved in competence development and sporulation [Replication, recombination and repair; Signal transduction mechanisms]
Probab=45.78 E-value=2.3e+02 Score=25.60 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcChhHHHHhhhhchhHHHHHH--------HHHHHHHHHHHHhhh---HHHHHHHhHHhHHHHhhhh
Q psy10214 95 AFFLQKRFLLSALKPELIVKEVNMVTKDIVDLR--------HDLARKEELIKRHYD---KIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 95 ~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR--------~ElaRKnaLLrkhy~---KIavWqnLlsdfQscLs~L 161 (415)
+|+.-||.+......-.++.|++.+..++.++. .+++ |=..+++++. ++..+-+-+.+|+.+|..|
T Consensus 24 ~~~~~~~~v~~d~eA~~lf~~F~~~q~~~q~~q~~G~~~d~~~~~-~~q~~~~~i~~~e~v~~f~eaE~~L~~~l~el 100 (118)
T COG3679 24 ALKEAKRAVEADEEAKKLFEEFRQLQEQFQEKQRFGYEPDYEEVT-KAQELKQEIQLNEKVSAFMEAEQALSSLLDEL 100 (118)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH-HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777777777666666554 2333 3333333333 5555555566666666655
No 341
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=45.67 E-value=1.3e+02 Score=26.46 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhhHhHhH----HHHHHHHHHHHHHHHHHHHH---HHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh--
Q psy10214 72 KDEIKLEI----DQATLKFLDLARQMEAFFLQ---KRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD-- 142 (415)
Q Consensus 72 k~E~~~~v----eq~~~kFid~Arq~E~fFLq---kr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~-- 142 (415)
+|||+.+- +.++-++-.+-.-||.||.. +-=-++-.+||-|..+ |+..|...|.++..-+=..+-
T Consensus 5 ~eEI~rdY~n~s~~v~E~l~~~~~~Lkq~f~~~qS~~~~mTC~~PeNI~~~------D~~~L~~~I~~~q~~~~~~~~~~ 78 (100)
T PF11291_consen 5 KEEIRRDYPNFSEEVFEKLNRCSVKLKQYFDKLQSKKENMTCNRPENISEK------DLNNLENSIQNYQSDIFYINFYK 78 (100)
T ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhcccCcccCCCCCCCHH------HHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred -HHHHHHHhHHhHHHHhh
Q psy10214 143 -KIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 143 -KIavWqnLlsdfQscLs 159 (415)
|...|..+.+.+++.+.
T Consensus 79 lk~~yl~~l~e~l~N~v~ 96 (100)
T PF11291_consen 79 LKKDYLSLLKENLENLVK 96 (100)
T ss_pred HHHHHHHHHHHHHhhhhh
No 342
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=45.67 E-value=68 Score=35.63 Aligned_cols=34 Identities=26% Similarity=0.592 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEE----LIKRHYDKIAVWQNLLSD 248 (415)
Q Consensus 215 KEEI~dLK~ELqRKEr----LIqKh~eKIeeWQsvL~d 248 (415)
+++|++++.+++..++ ++.++.+++..|...+..
T Consensus 235 ~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~ 272 (759)
T PF01496_consen 235 EEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRK 272 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666554333 334555666667655543
No 343
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=45.62 E-value=2e+02 Score=31.51 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=26.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHH
Q psy10214 177 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDL 225 (415)
Q Consensus 177 Kv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~EL 225 (415)
..-+...+.+|++..++||..+|+.|. .||.|+...+
T Consensus 100 e~Av~~~~~~~~~~f~~~dd~YlreRa------------~Di~Dv~~Rl 136 (565)
T TIGR01417 100 EFAAHEVFEGQAKSLEEMDDEYLKERA------------ADIRDIGNRL 136 (565)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHH------------HHHHHHHHHH
Confidence 344677788888888899988887663 3666666553
No 344
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=45.53 E-value=2.8e+02 Score=27.47 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=55.4
Q ss_pred HHHhhhHHH-HHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHH---HHHHHHH-------HHHHHHHHHHHH--
Q psy10214 137 IKRHYDKIA-VWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQAT---LKFLDLA-------RQMEAFFLQKRF-- 203 (415)
Q Consensus 137 Lrkhy~KIa-vWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~t---nRFLD~A-------RQLE~FFLQKrl-- 203 (415)
++++..|++ .|.+|-.++=++++.|++.+.. ..+...+..-+++.+ |=||-+. ...|..|+....
T Consensus 48 ~~~~~~RL~Y~W~eLW~aLlsLl~Fl~~~~~~--l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~ 125 (237)
T PF08427_consen 48 LKRSRIRLEYHWSELWRALLSLLRFLTTYESD--LKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSG 125 (237)
T ss_pred HHhcCccccccHHHHHHHHHHHHHHHHhchhh--hhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhch
Confidence 334444444 7888888888888888665421 112223333333332 2233333 244444442111
Q ss_pred ----------hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 204 ----------LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNL 245 (415)
Q Consensus 204 ----------llSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsv 245 (415)
......+....++....+-..+..-..++..+..||++|.+.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~nl~~I~~Hf~~ki~~~~~~ 177 (237)
T PF08427_consen 126 QVFDKFRDMYLRSSTSSSSEYKDSSDKLTNSLDNLRSIISHFESKIEEWSAA 177 (237)
T ss_pred HHHHHHHHHHhhccCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111111223334445567788888899999999988654
No 345
>KOG4025|consensus
Probab=45.30 E-value=48 Score=32.09 Aligned_cols=109 Identities=14% Similarity=0.274 Sum_probs=50.6
Q ss_pred CCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 69 PLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 69 ~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
.+|+.|+.+....+..|.-| +--++.|-+ | .+|+=.+|.|+ .-.+||.=|+|--+.|.....=++-..
T Consensus 60 il~~~~l~VNl~Es~LRm~~-~~d~ney~v------~--r~E~~fqeLn~---ka~aLk~iLSriPdEinDR~~FLeTIK 127 (207)
T KOG4025|consen 60 ILDDSELSVNLQESYLRMHD-TSDTNEYIV------S--RYEQDFQELNK---KAIALKRILSRIPDEINDRHAFLETIK 127 (207)
T ss_pred HHhhhccccchHHHHHHhhc-ccchhhHhh------c--CCCccHHHHHH---HHHHHHHHHHhCcHhhhhHHHHHHHHH
Confidence 45666666666666666665 333444432 1 23434445443 344455555544444433322222233
Q ss_pred HhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHH
Q psy10214 149 NLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQ 193 (415)
Q Consensus 149 nLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQ 193 (415)
..-+++..+|..+-+.-..+..+. +--||+....|++|++.
T Consensus 128 ~IASaIKkLLd~vN~v~~~~p~t~----~~AvE~rKkEFVkYSK~ 168 (207)
T KOG4025|consen 128 LIASAIKKLLDAVNAVYRIVPLTA----QPAVEKRKKEFVKYSKR 168 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc----cHHHHHHHHHHHHHHHH
Confidence 333333333332211112212222 44568888889988863
No 346
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=45.04 E-value=2.6e+02 Score=29.08 Aligned_cols=28 Identities=4% Similarity=0.175 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIA 240 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIe 240 (415)
..+.||+++.+.|...++=++...+.|+
T Consensus 286 PTRsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 286 PTRSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555555555444443
No 347
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=45.03 E-value=4.6e+02 Score=30.53 Aligned_cols=62 Identities=10% Similarity=0.264 Sum_probs=30.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q psy10214 176 IKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAV-------WQNLLSD 248 (415)
Q Consensus 176 IKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIee-------WQsvL~d 248 (415)
++..+...+++=++ +.=..|||+.+++. +++|+.+-. +.+ .-+.++++||+. -+.++++
T Consensus 210 ~ek~I~~kVk~~me--K~QREyyL~EQlKa--------IqkELG~~~---d~~-~e~~~~~~kie~~~~p~evk~k~~~E 275 (782)
T COG0466 210 LEKRIRKKVKEQME--KSQREYYLREQLKA--------IQKELGEDD---DDK-DEVEELREKIEKLKLPKEAKEKAEKE 275 (782)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHHhCCCc---cch-hHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 33334444434334 45567999665533 344444332 111 345556666654 4555666
Q ss_pred Hhc
Q psy10214 249 LQG 251 (415)
Q Consensus 249 lq~ 251 (415)
++.
T Consensus 276 l~k 278 (782)
T COG0466 276 LKK 278 (782)
T ss_pred HHH
Confidence 654
No 348
>COG2733 Predicted membrane protein [Function unknown]
Probab=45.01 E-value=4.4e+02 Score=28.56 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=15.5
Q ss_pred CchhhHhHhHHHHHHHHHHH
Q psy10214 70 LEKDEIKLEIDQATLKFLDL 89 (415)
Q Consensus 70 ~~k~E~~~~veq~~~kFid~ 89 (415)
++.++++.-|..+|.|+++-
T Consensus 196 ~~~~~v~~~i~~~i~r~~~e 215 (415)
T COG2733 196 LLNDKVREFIAAVIVRYLEE 215 (415)
T ss_pred hhhhhhHHHHHHHHHHHHHh
Confidence 46778888888888888774
No 349
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=44.93 E-value=1.7e+02 Score=23.72 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 84 LKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 84 ~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
.+.-++-.++.++|-.-+-.|-..+- .+ +.+|..+-.+|...|......+
T Consensus 35 ~~~~~~~~~I~~~f~~l~~~L~~~e~--~l---------l~~l~~~~~~~~~~l~~q~~~l 84 (127)
T smart00502 35 ENAADVEAQIKAAFDELRNALNKRKK--QL---------LEDLEEQKENKLKVLEQQLESL 84 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666777666666532222 11 2245555555555555555544
No 350
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.85 E-value=3.1e+02 Score=26.90 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy10214 234 RHYDKIAVWQNLLS 247 (415)
Q Consensus 234 Kh~eKIeeWQsvL~ 247 (415)
+...+++.....|+
T Consensus 258 ~~~~~l~~~~~~L~ 271 (319)
T PF02601_consen 258 QKRQRLERLEARLE 271 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 351
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=44.72 E-value=3.4e+02 Score=27.31 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=43.0
Q ss_pred HHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHH-----HHHHHHHHHHHhh----------hccC
Q psy10214 145 AVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLAR-----QMEAFFLQKRFLL----------SALK 209 (415)
Q Consensus 145 avWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~AR-----QLE~FFLQKrlll----------Sa~K 209 (415)
.+|..-.+.+...+..+...+.. --+-.+-++.||+-+=..|.+++. ++-.=|+++.+.+ ...-
T Consensus 187 ~~~~~a~~~~~~~l~~~~~~g~~-~~s~re~~d~Wi~~ae~~~~~~~~S~ef~~~~g~~~~a~m~~r~~~~~~~e~~L~~ 265 (293)
T PF09712_consen 187 EAWMKAFERMMEKLQERAEEGEQ-IKSWREFYDIWIDAAEEAYEELFRSEEFAQAYGQLVNALMDLRKQQQEVVEEYLRS 265 (293)
T ss_pred HHHHHHHHHHHHHHHHhhccCCC-CcCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666555444322 112245566777755555544441 0001111111110 0000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 210 PELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 210 Pe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
-...++.||+++..+|...++=++..
T Consensus 266 l~lPTr~evd~l~k~l~eLrre~r~L 291 (293)
T PF09712_consen 266 LNLPTRSEVDELYKRLHELRREVRAL 291 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 12244778888888877776666554
No 352
>KOG3478|consensus
Probab=44.72 E-value=2.5e+02 Score=25.65 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~spa 257 (415)
..-|+=+..||.|++.-|+...++.+..+..+-.+++.+.+++
T Consensus 75 ~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~ 117 (120)
T KOG3478|consen 75 GKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAA 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456667788999999999999999998888888887666433
No 353
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=44.61 E-value=3.1e+02 Score=26.71 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=35.9
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
+.||+- |..++.+|.++-+.||+|.- .|.....+.|++= +...++|-=+.=.-.||.|+|.
T Consensus 59 tDDe~~--i~~~L~kF~~~l~ei~~~r~----~L~~q~~~~l~~p-------L~~F~k~dl~~~ke~kk~FdK~ 119 (207)
T cd07602 59 TDDEIE--IAESLKEFGRLIETVEDERD----RMLENAEEQLIEP-------LEKFRKEQIGGAKEEKKKFDKE 119 (207)
T ss_pred cccHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 66999999999999999853 3333333344433 2333333223334456777776
No 354
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.44 E-value=1.5e+02 Score=27.24 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=9.2
Q ss_pred hchhHHHHHHHHHHHHH
Q psy10214 118 MVTKDIVDLRHDLARKE 134 (415)
Q Consensus 118 ~~~~di~eLR~ElaRKn 134 (415)
+.++|+.+||+||.+|+
T Consensus 158 ~~~~ei~~lk~el~~~~ 174 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKE 174 (192)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33445555555555554
No 355
>KOG2376|consensus
Probab=44.39 E-value=4.8e+02 Score=29.73 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=15.1
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHH
Q psy10214 173 KDEIKLEIDQATLKFLDLARQMEAFFL 199 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~ARQLE~FFL 199 (415)
.+|+++.++ .+|++++.++.+-.+
T Consensus 141 ~dd~d~~~r---~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 141 SDDQDEERR---ANLLAVAAALQVQLL 164 (652)
T ss_pred CchHHHHHH---HHHHHHHHhhhHHHH
Confidence 455555555 677777777776533
No 356
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=44.38 E-value=96 Score=35.64 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+-|+...+.-|++---=|.+.++||-++-++.+-...
T Consensus 311 ~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~ 347 (782)
T COG0466 311 KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK 347 (782)
T ss_pred hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc
Confidence 3344444444544444567888999998887766543
No 357
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=44.32 E-value=3.3e+02 Score=26.97 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHhhhccCchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 200 QKRFLLSALKPEL--IVKEDIVDLRHDLARKEELIKRHYDKIAVWQN 244 (415)
Q Consensus 200 QKrlllSa~KPe~--vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQs 244 (415)
...++...|.||. +++.--+.|...+++.+.-..+...+++.++.
T Consensus 160 ~~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~ 206 (238)
T PF14735_consen 160 ELEILSDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEG 206 (238)
T ss_pred HHHHHHccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345566777887 44555566666677777666666666666443
No 358
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=44.21 E-value=88 Score=30.67 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.0
Q ss_pred CCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHH
Q psy10214 61 LPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAF 96 (415)
Q Consensus 61 ~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~f 96 (415)
+.++..|..+|.+++...++++-.++-.+-.+++.+
T Consensus 65 V~kG~~L~~ld~~~~~~~l~~~~a~l~~~~~~l~~~ 100 (331)
T PRK03598 65 VKAGQVLGELDAAPYENALMQAKANVSVAQAQLDLM 100 (331)
T ss_pred EcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778899999988888887776666665543
No 359
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.06 E-value=39 Score=28.57 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 225 LARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 225 LqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
|++-++=|+|..+||++|+.-|++|+.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666678889999999999988854
No 360
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=44.04 E-value=3.8e+02 Score=27.61 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=26.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 210 Pe~vvKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
-+..+++++..++.+++++-+.++.||++++.
T Consensus 113 s~~~y~~~~~~l~~~l~~~l~~~~~~y~~~d~ 144 (332)
T TIGR01541 113 GSDLYKEQLAAIKAALNEALAELHAYYAAEDA 144 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888888888888888888888887
No 361
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.01 E-value=4.3e+02 Score=28.26 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=9.6
Q ss_pred hhHhHhHHHHHHHHHHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQM 93 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~ 93 (415)
++...-|.++..++-.+.+++
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l 267 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKEL 267 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 362
>KOG2991|consensus
Probab=43.96 E-value=3.9e+02 Score=27.73 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhh-HHHHHHHhHHhHHH
Q psy10214 129 DLARKEELIKRHYD-KIAVWQNLLSDLQS 156 (415)
Q Consensus 129 ElaRKnaLLrkhy~-KIavWqnLlsdfQs 156 (415)
+.+|+++.|-..|. |-..++++.++++.
T Consensus 126 ~a~RrE~ilv~rlA~kEQEmqe~~sqi~~ 154 (330)
T KOG2991|consen 126 EAARRENILVMRLATKEQEMQECTSQIQY 154 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566655444444 45555555555544
No 363
>KOG0104|consensus
Probab=43.74 E-value=5.4e+02 Score=30.27 Aligned_cols=31 Identities=3% Similarity=0.090 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 218 IVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248 (415)
Q Consensus 218 I~dLK~ELqRKErLIqKh~eKIeeWQsvL~d 248 (415)
..++.+...+.+|....+.+|+..|....+-
T Consensus 814 ~kei~~K~k~Ldrev~~~lnK~k~~~~~~~k 844 (902)
T KOG0104|consen 814 VKEIEEKAKSLDREVLYLLNKLKIRKPRKQK 844 (902)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhccCccccc
Confidence 4455555666778888888999888765543
No 364
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=43.71 E-value=39 Score=38.21 Aligned_cols=46 Identities=28% Similarity=0.456 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcChhHHHH---------hhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 97 FLQKRFLLSALKPELIVK---------EVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 97 FLqkr~~ls~~kpe~i~k---------e~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
-|.+||.||..+-|.|+. |-++.++|..+|++|+++.+++|...-.
T Consensus 398 ~L~~~f~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~~~ 452 (735)
T TIGR01062 398 ILMERFKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKSERE 452 (735)
T ss_pred HHHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 467788888888888864 4455556666666666666666554433
No 365
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.70 E-value=4.3e+02 Score=29.16 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy10214 122 DIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~ 142 (415)
++.++++.+.++.+..+.-|.
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~ 185 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKK 185 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333
No 366
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=43.64 E-value=3.6e+02 Score=27.20 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-HHHHHHHhHHhHHHHhhhhhcc
Q psy10214 122 DIVDLRHDLARKEELIKRHYD-KIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~-KIavWqnLlsdfQscLs~LSkq 164 (415)
--.++++...|-..-+++.|. .+.-.++=+.+||.|.+.++..
T Consensus 92 Nqk~l~d~~~~~~~~~~~~~~qE~~ra~eRl~~LqalYp~v~v~ 135 (241)
T PF09321_consen 92 NQKKLKDAEKRRLRCLQDFYDQEIERAQERLRELQALYPEVSVS 135 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 344555555555666777777 3777778888999998877554
No 367
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=78 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=29.4
Q ss_pred hcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 106 ALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 106 ~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
...+|.+..++|.+..++..|+.++...+..+.+.-.-+
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~ 43 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAI 43 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888887776544433
No 368
>KOG3595|consensus
Probab=43.47 E-value=2.6e+02 Score=33.85 Aligned_cols=87 Identities=28% Similarity=0.222 Sum_probs=53.6
Q ss_pred CCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHH------HHhhhhchhHHHHHHHHHHHHHHHHHHh
Q psy10214 67 LSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI------VKEVNMVTKDIVDLRHDLARKEELIKRH 140 (415)
Q Consensus 67 ~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i------~ke~n~~~~di~eLR~ElaRKnaLLrkh 140 (415)
+.-.++|++...+.+-+.+ -.-+...|+-.+....|. -++-+ +-.|+++.+.+.-++.+++|.+..+++.
T Consensus 871 l~~~~~~~i~~~~~k~i~~---~~~~~p~f~~~~v~~~s~-a~~~l~~wv~a~~~~~kv~~~v~p~~~~~~~~e~~~~~~ 946 (1395)
T KOG3595|consen 871 LREFDKDEIPEEIMKLIKK---FYFQNPDFVPEKVNRASL-ACEGLCLWVIAIDKYSKVLKVVEPKRQELARLEAELKAA 946 (1395)
T ss_pred hhcCccccChHHHHHHHHH---hhcCCccCCHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3456888888888755533 123445566666555555 34433 3346777788888888888888777766
Q ss_pred hhHHHHHHHhHHhHHHH
Q psy10214 141 YDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 141 y~KIavWqnLlsdfQsc 157 (415)
-..++.-...+.++..-
T Consensus 947 ~~~l~~~~~~l~~~e~~ 963 (1395)
T KOG3595|consen 947 MKELEEKSAELQDLEEK 963 (1395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655554444444433
No 369
>PHA03247 large tegument protein UL36; Provisional
Probab=43.43 E-value=3.4e+02 Score=35.91 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 179 EIDQATLKFLDLARQMEAFFLQKRFL 204 (415)
Q Consensus 179 ~VEq~tnRFLD~ARQLE~FFLQKrll 204 (415)
.+-+.....+.-+|.|+..+++-++.
T Consensus 954 ~~~r~aed~vrqak~l~~~~~~~~Ls 979 (3151)
T PHA03247 954 ETRRLAEDALRQAKAMAAAKLTDELS 979 (3151)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccC
Confidence 34567778888899999999977643
No 370
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=43.26 E-value=2.7e+02 Score=25.72 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=15.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 209 KPELIVKEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 209 KPe~vvKEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
+.+++ ++-..+.+.-|+...+.+++.++++
T Consensus 154 ~~~~~-~~~l~e~~~~L~~l~~~f~~~~~~l 183 (199)
T PF10112_consen 154 KSEEI-KQSLEEIEETLDTLNQAFEKDLDKL 183 (199)
T ss_pred CChhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433 3344455555655666666666555
No 371
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=43.26 E-value=4.1e+02 Score=27.79 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=37.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------cChhHHHHhhhhchhHHHHHHHHHHHHHH
Q psy10214 75 IKLEIDQATLKFLDLARQMEAFFLQKRFLLSA-------------------LKPELIVKEVNMVTKDIVDLRHDLARKEE 135 (415)
Q Consensus 75 ~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~-------------------~kpe~i~ke~n~~~~di~eLR~ElaRKna 135 (415)
|+..+|-..++|-+..+-+..-..-+++.-.. .-.+.|++ ++..|..|++-.=+
T Consensus 141 ~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~-------~l~~le~ema~lL~ 213 (412)
T PF04108_consen 141 IQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSPSSSSSNPLMSTILK-------ELHSLEQEMASLLE 213 (412)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCcccccccHHHHHH-------HHHHHHHHHHHHHH
Confidence 45566666667766666665555333332211 12233333 56677788888888
Q ss_pred HHHHhhhH
Q psy10214 136 LIKRHYDK 143 (415)
Q Consensus 136 LLrkhy~K 143 (415)
=|-+||++
T Consensus 214 sLt~HfDq 221 (412)
T PF04108_consen 214 SLTNHFDQ 221 (412)
T ss_pred HHHHHHHH
Confidence 88999994
No 372
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=42.99 E-value=1.4e+02 Score=27.48 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=0.0
Q ss_pred CCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhhcChhHHHHhhhhchhHHH
Q psy10214 61 LPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQK----------------RFLLSALKPELIVKEVNMVTKDIV 124 (415)
Q Consensus 61 ~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqk----------------r~~ls~~kpe~i~ke~n~~~~di~ 124 (415)
+-|+...++-=++|+-.++..+-.+.-.+--++-.||..| |..+ -|.=-|||..++.-+.
T Consensus 43 iEDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~~Ra~~v~k~~K~p~v~DY~~~v----~e~Dek~~~~lr~~~~ 118 (150)
T PF02252_consen 43 IEDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFSARAKAVSKAAKYPHVEDYRQAV----HELDEKEYISLRLIVL 118 (150)
T ss_dssp --SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTBTHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q psy10214 125 DLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 125 eLR~ElaRKnaLLrkhy~KI 144 (415)
|+|+--+-.-++|-|+++||
T Consensus 119 elRn~Y~~l~D~i~KN~eKi 138 (150)
T PF02252_consen 119 ELRNNYATLYDIISKNFEKI 138 (150)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHh
No 373
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=42.75 E-value=5.9e+02 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Q psy10214 231 LIKRHYDKIAVWQNLLSDLQGWAK 254 (415)
Q Consensus 231 LIqKh~eKIeeWQsvL~dlq~~~~ 254 (415)
=|...-+|+++||.++.-|-.+++
T Consensus 734 EiaaAA~KLAECQeTI~sLGkQLk 757 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIASLGKQLK 757 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667889999999988866566
No 374
>KOG4593|consensus
Probab=42.50 E-value=5.9e+02 Score=29.39 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q psy10214 214 VKEDIVDLRHDLARKEELIK----------RHYDKIAVWQNLLSD 248 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIq----------Kh~eKIeeWQsvL~d 248 (415)
+++|...|..++-|-+.+.- +++.|+..|..+-+.
T Consensus 280 LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~ 324 (716)
T KOG4593|consen 280 LQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQE 324 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 35555555555555444433 334455555554443
No 375
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=42.49 E-value=1.1e+02 Score=28.11 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=51.9
Q ss_pred cchhHhhhhhhccccCCCCCCCC-CCCCchhhHhHhHHHHHHHHHH-HHHHHHHHH-HHHHHHHhhcChhHHHHhhhh
Q psy10214 44 LLQGPLAYLEKTTSNIGLPDGRS-LSPLEKDEIKLEIDQATLKFLD-LARQMEAFF-LQKRFLLSALKPELIVKEVNM 118 (415)
Q Consensus 44 ~f~~~l~~~~~~~~~~~~~~~~~-~~~~~k~E~~~~veq~~~kFid-~Arq~E~fF-Lqkr~~ls~~kpe~i~ke~n~ 118 (415)
||..++.++..+.+ ++..+ +.|-|+..--+.||+.+-.=.- |+--+|.-| +.-|+.|+..||-+--.+.|.
T Consensus 19 I~~~L~~ymngtks----t~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e~Fa~rT~aaL~~~CPGyse~QiN~ 92 (124)
T PF15216_consen 19 IFHDLLKYMNGTKS----TEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKETFANRTRAALANYCPGYSETQINN 92 (124)
T ss_pred HHHHHHHHHccCCc----ccccCccccCCchhHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhCCCcchhhcch
Confidence 67778888776421 22222 4788899999999988766554 666665555 999999999999988888775
No 376
>PRK13411 molecular chaperone DnaK; Provisional
Probab=42.25 E-value=2.2e+02 Score=31.37 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q psy10214 186 KFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH-------YDKIAVWQNLLSDLQ 250 (415)
Q Consensus 186 RFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh-------~eKIeeWQsvL~dlq 250 (415)
+.+++-.++|.|.+..+-.+... .+.+..++...++..+++-++||..+ .+|+++-+..+..+.
T Consensus 526 ~~~eakN~lEs~iy~~r~~l~~~-~~~~~~~er~~i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~ 596 (653)
T PRK13411 526 QLIELKNQADSLLYSYESTLKEN-GELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIG 596 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33445567999988777777543 33456778888999999999998653 345555555555553
No 377
>PF15456 Uds1: Up-regulated During Septation
Probab=42.25 E-value=2.6e+02 Score=25.14 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQsc 157 (415)
|+.+||+|+.-.+..|.--..|+++=....++-.++
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl 58 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSL 58 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987766666665444444444443
No 378
>PRK02224 chromosome segregation protein; Provisional
Probab=42.17 E-value=5.4e+02 Score=28.80 Aligned_cols=15 Identities=7% Similarity=0.341 Sum_probs=6.6
Q ss_pred hhhHhHhHHHHHHHH
Q psy10214 72 KDEIKLEIDQATLKF 86 (415)
Q Consensus 72 k~E~~~~veq~~~kF 86 (415)
.++++..++..-.+|
T Consensus 323 ~~el~~~l~~~~~~l 337 (880)
T PRK02224 323 DEELRDRLEECRVAA 337 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555444433333
No 379
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=42.06 E-value=25 Score=33.52 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhHHhHHHHhhhhhccc
Q psy10214 120 TKDIVDLRHDLARKE-ELIKRHYDKIAVWQNLLSDLQSCLQVLTKED 165 (415)
Q Consensus 120 ~~di~eLR~ElaRKn-aLLrkhy~KIavWqnLlsdfQscLs~LSkqE 165 (415)
++.++++++.+...+ +.|.+...++..||+-.+++. ||+.|+..|
T Consensus 16 ~~~L~~~k~~Ls~~e~~~i~~~~~~L~~~Q~~~d~~~-~LP~L~~~D 61 (248)
T PF08367_consen 16 KEKLAAYKASLSEEEKEKIIEQTKELKERQEAEDDLA-TLPTLSLSD 61 (248)
T ss_dssp HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHCS--HHT-TS----GGG
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCChhhHH-HHccccHHh
Confidence 346666666665555 677777888999999999766 888776554
No 380
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=41.83 E-value=42 Score=29.29 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=18.7
Q ss_pred HHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 112 IVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 112 i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
+...++..+.++..|..++.+.+..|.++..-+
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566666666666666666555444
No 381
>PRK01294 lipase chaperone; Provisional
Probab=41.81 E-value=4.1e+02 Score=27.38 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=43.6
Q ss_pred CCccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcChhHHHHhhhh
Q psy10214 41 PGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEA--FFLQKRFLLSALKPELIVKEVNM 118 (415)
Q Consensus 41 ~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~--fFLqkr~~ls~~kpe~i~ke~n~ 118 (415)
.|.+|+-||..+... +-++|+..|...+..=++..-+-|+ -|.+++.-+.++.. ++.-+.
T Consensus 88 ~Rd~FDYfLs~~gE~---------------~l~~i~~~v~~~i~~~l~~~a~~~a~~l~~rY~~Y~~aL~~---l~~~~~ 149 (336)
T PRK01294 88 LRDFFDYFLSALGEL---------------DLAAIDALVEREIAAQLPEPADSQALDLWLRYKAYLSALAQ---LEDDGP 149 (336)
T ss_pred HHHHHHHHhhccCCC---------------CHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH---hhccCC
Confidence 455666666554433 7788888888776653333223343 34555444433331 001111
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 119 VTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
...|+..++.-+.+-.+|=++++.
T Consensus 150 ~~~d~~~l~~~~~~~~~Lr~~~f~ 173 (336)
T PRK01294 150 GKLDLQALQQLLDARLALRARFFS 173 (336)
T ss_pred CccCHHHHHHHHHHHHHHHHHHcC
Confidence 223666777766666655555554
No 382
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.43 E-value=2.8e+02 Score=26.13 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy10214 192 RQMEAFFL 199 (415)
Q Consensus 192 RQLE~FFL 199 (415)
|-.|+.|+
T Consensus 153 rwTDNI~~ 160 (188)
T PF03962_consen 153 RWTDNIFS 160 (188)
T ss_pred HHHhhHHH
Confidence 44444444
No 383
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=41.39 E-value=2.3e+02 Score=24.42 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 179 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 179 ~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
++--.+-.||-..+-+-.||+......= .+-+..+.+++++-+.....-++++..+..+++.|+.--+.+
T Consensus 7 t~~~~~i~flil~~ll~~~l~~pi~~~l-~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i 76 (140)
T PRK07353 7 TLPLMAVQFVLLTFILNALFYKPVGKVV-EEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAV 76 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455788888888888875533221 223334467777777777778888888888888877665555
No 384
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=41.37 E-value=1e+02 Score=34.24 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=71.7
Q ss_pred CCccchhHhhhhhhccccCCCCCCCCCCCCchhhHh-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhc
Q psy10214 41 PGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIK-LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMV 119 (415)
Q Consensus 41 ~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~-~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~ 119 (415)
|-|+|+-|--..-|-++..+.+-- +.+..-+-++ .+++++-.|--++|+++|+-|-=+-+.-|+.|- +++|-
T Consensus 436 p~~ifdIckyw~mKR~~~~g~PL~--~~~~~~~sl~tl~~~~sk~R~~~~~~~LqD~YqL~~L~~~~~KR-~~~~~---- 508 (669)
T COG5141 436 PVNIFDICKYWEMKRKSEIGGPLV--ILPDIVYSLKTLEDWMSKRRMREVAKALQDQYQLLTLVESTAKR-QLLKC---- 508 (669)
T ss_pred CchhhHHHHHHHHhhhhcCCCCce--echhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----
Confidence 788999887776666544432111 0111111111 234444445558899999865422222222221 22222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH-----HHHhh--hhhcccccccccchhhHhHhHHHHHHHHHHHHH
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL-----QSCLQ--VLTKEDEVSTTLEKDEIKLEIDQATLKFLDLAR 192 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf-----QscLs--~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~AR 192 (415)
.++.+|+..--.+.-=.+...++.+.|=..+.+ .+.+. .++.+-++...+|.+-...|=+ +|.-|||..-
T Consensus 509 --qLS~~RKK~~nl~~~P~q~LLqv~iiDl~v~~~~~~~Ld~~l~~~~~~~~i~~~~~~e~~~~~I~~~-dvi~~~d~mE 585 (669)
T COG5141 509 --QLSNLRKKFLNLNYFPAQRLLQVKIIDLDVDGLFNMPLDNELKRQVFSYQIGSISSLEKKLEPIWDV-DVIQCIDDME 585 (669)
T ss_pred --HHHHHHHHhhccccChHhhhheeeEEEeeccchhccchHhHhhhceeeeeecccccccccccchhHH-HHHHHHHHHH
Confidence 344444433333322223333444444222222 23332 1334434556777777767633 2778888776
Q ss_pred HHHH--HHHHH
Q psy10214 193 QMEA--FFLQK 201 (415)
Q Consensus 193 QLE~--FFLQK 201 (415)
++-. -|+|+
T Consensus 586 ~L~~~~q~~Q~ 596 (669)
T COG5141 586 QLTAMVQFAQK 596 (669)
T ss_pred HhHHHHHHHHH
Confidence 6654 45655
No 385
>KOG1103|consensus
Probab=41.32 E-value=5e+02 Score=28.17 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCCC
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG--WAKSPAHQG 260 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~--~~~spaq~~ 260 (415)
|..-|++|+.|-+.--...++.++-.+.+++|++- ++-+|...+
T Consensus 253 Ere~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeqL 298 (561)
T KOG1103|consen 253 EREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQL 298 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccccc
Confidence 45566777777777777777777778888888854 233554443
No 386
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=41.17 E-value=3e+02 Score=28.22 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=46.4
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHH--------HHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 173 KDEIKLEIDQATLKFLDLARQMEAFF--------LQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQN 244 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~ARQLE~FF--------LQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQs 244 (415)
..+|-+.|+=.|...++++-++..+- -.....+|++..+. ..=.+.|+.+|..|.+-|++ ++.++.
T Consensus 203 ~~~IPvavYWtI~siVAc~sqI~~lt~~~~e~~~~~~~~eLS~l~~KL--~~I~~~Lk~qL~~C~~~I~~----~E~y~~ 276 (286)
T PF14576_consen 203 LAHIPVAVYWTIRSIVACASQITGLTGMGHEITSTTEAWELSSLAHKL--SNILSHLKKQLDLCRQQIEE----IEDYQM 276 (286)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHhhHHHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34566677778888899998888872 12344555444333 22256677777777666655 888888
Q ss_pred HHHHHh
Q psy10214 245 LLSDLQ 250 (415)
Q Consensus 245 vL~dlq 250 (415)
+++-.+
T Consensus 277 l~~lf~ 282 (286)
T PF14576_consen 277 LLKLFE 282 (286)
T ss_pred HHHHhh
Confidence 777655
No 387
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=41.07 E-value=5.5e+02 Score=28.66 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 225 LARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 225 LqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
..+.+.+.+++.+++..|...|+.-
T Consensus 249 ~~~l~~~~~~~~~~l~~~~~~l~~e 273 (660)
T COG1269 249 RSELEALAEKIAEELLAVREILEIE 273 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777777888887654
No 388
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.05 E-value=2.5e+02 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDKIA 145 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~KIa 145 (415)
.+++..++.|+.+++..+...-.++.
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~ 27 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQ 27 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777666665555543
No 389
>CHL00043 cemA envelope membrane protein
Probab=40.79 E-value=1.4e+02 Score=30.14 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh--HHHHHHHhHHhHHHHhh
Q psy10214 123 IVDLRHDLARKEELIKRHYD--KIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 123 i~eLR~ElaRKnaLLrkhy~--KIavWqnLlsdfQscLs 159 (415)
.++++.++.+|-..|.++|. .|+.+.|+.+|+=+++.
T Consensus 113 ~~~~~~~i~~kaieL~~~~n~~~i~~i~n~~td~i~~~~ 151 (261)
T CHL00043 113 LQKLRIGIHKETIQLAKIYNEDSIHTILHLSTNIISFAI 151 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44678888888866666665 69999999999986665
No 390
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=40.76 E-value=3.6e+02 Score=26.35 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----HHHHHHH---hHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYD----KIAVWQN---LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQM 194 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~----KIavWqn---LlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQL 194 (415)
.|.++..|+.|-++.|++-+- -++--.+ -..+|-.+|..+...- +......||+ .|..++.+|...-+.+
T Consensus 3 ~l~~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~-~gd~~~dDe~--~I~~~L~kF~~~L~ei 79 (207)
T cd07636 3 RLKSHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQC-IGDAETDDEI--CIARSLQEFAAVLRNL 79 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccHH--HHHHHHHHHHHHHHHH
Confidence 455666666666666655544 1221112 2233445555554220 0001112222 3457888998888888
Q ss_pred HHHHH----HHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 195 EAFFL----QKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIA 240 (415)
Q Consensus 195 E~FFL----QKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIe 240 (415)
+.|.- |....+. ..-+..+|++|...|..-.+-|+.-+++..-++
T Consensus 80 ~~~r~~L~~qa~~~l~-~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~ 128 (207)
T cd07636 80 EDERTRMIENASEVLI-TPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLE 128 (207)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHH
Confidence 88654 2221111 112335677777776665555554444444333
No 391
>PRK11677 hypothetical protein; Provisional
Probab=40.73 E-value=1.2e+02 Score=27.59 Aligned_cols=44 Identities=11% Similarity=0.268 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHhHHhHHHHhhhhhc
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDK-IAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~K-IavWqnLlsdfQscLs~LSk 163 (415)
.+++.+.|.|+.+-+..|..|+.+ ..+.++|-.+.+.+...|++
T Consensus 35 e~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 35 QYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999889999985 77788888888887777644
No 392
>KOG1265|consensus
Probab=40.72 E-value=4.3e+02 Score=31.65 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=37.3
Q ss_pred chhhHhHhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCh--hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLAR-QMEAFFLQKRFLLSALKP--ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Ar-q~E~fFLqkr~~ls~~kp--e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
...-++.-|++.+++.+.+.| |.|++|-.|+.-|+..+. ..|+.|- -..+...||.-+.|--..|+++.+|+
T Consensus 1027 ~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~ea--q~~Q~k~LK~~~e~e~kElk~~l~kk 1101 (1189)
T KOG1265|consen 1027 NAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEA--QTNQTKALKESLEKETKELKKKLDKK 1101 (1189)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777664 677777777666654433 2233331 12233344433333334455555543
No 393
>KOG1162|consensus
Probab=40.71 E-value=3.9e+02 Score=30.24 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcc-ccc
Q psy10214 126 LRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKE-DEV 167 (415)
Q Consensus 126 LR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkq-E~s 167 (415)
+++...+.+..+-+.|.++...++.-.--...|+-|.|. |.+
T Consensus 122 ~~~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI~KKyDK~ 164 (617)
T KOG1162|consen 122 LRKAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKILKKYDKI 164 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555666788889888877765555666666555 543
No 394
>PHA02562 46 endonuclease subunit; Provisional
Probab=40.52 E-value=4.5e+02 Score=27.46 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=40.5
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAF---FLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNL 150 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~f---FLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnL 150 (415)
+++..++....+.-.+..+++.| ...-+-.+ ...-+.+-+|++...++...++.++.+.++.|..-+..+....+.
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~-~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~ 256 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN-GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAA 256 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 55555555555555554444422 22222211 122344455566666666666777766666666665544444444
Q ss_pred HHhHH
Q psy10214 151 LSDLQ 155 (415)
Q Consensus 151 lsdfQ 155 (415)
+..++
T Consensus 257 L~~l~ 261 (562)
T PHA02562 257 LNKLN 261 (562)
T ss_pred HHHHH
Confidence 44443
No 395
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=40.51 E-value=5e+02 Score=28.03 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhh
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQV 160 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~ 160 (415)
.+.+|+.++.. .+.--.++..+...+.+++..|..
T Consensus 226 ~l~~L~~e~~~----~k~Le~kL~~a~~~l~~Lq~El~~ 260 (522)
T PF05701_consen 226 ELEELKEELEA----AKDLESKLAEASAELESLQAELEA 260 (522)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555522 222223566666666666655553
No 396
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.40 E-value=94 Score=32.50 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcChhHHHHhhhhchhHHHHHH
Q psy10214 95 AFFLQKRFLLSALKPELIVKEVNMVTKDIVDLR 127 (415)
Q Consensus 95 ~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR 127 (415)
....++|-++ .+-|.+-.|.|.++++|.+++
T Consensus 34 ~ld~~~r~~~--~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 34 ALDDERKKLL--SEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555 445777788888888887754
No 397
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.19 E-value=1.9e+02 Score=32.76 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
..||.++..+|.+.+.-|.+-++++++-+.-|..+.
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666667777777777765
No 398
>KOG3677|consensus
Probab=40.15 E-value=1.8e+02 Score=31.92 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=85.9
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHH-----HHHHHHHHHh----hh----H
Q psy10214 80 DQATLKFLDL---ARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL-----ARKEELIKRH----YD----K 143 (415)
Q Consensus 80 eq~~~kFid~---Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~El-----aRKnaLLrkh----y~----K 143 (415)
.-+|.+|+++ -++++.|| .-.++|-+.|-|+|-.. .+|-+=+ +++||-|.-. |- +
T Consensus 289 adai~~F~niLlyIqrtks~~-----~~~~y~~d~inKq~eqm----~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~ 359 (525)
T KOG3677|consen 289 ADAIRVFLNILLYIQRTKSMF-----SRTTYQYDMINKQNEQM----HHLLAICLSMYPQMIDESIHSQLAEKYGDKMLP 359 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-----cchhhhHhhhhhhHHHH----HHHHHHHHHhCchhhhHHHHHHHHHHhcchhhh
Confidence 4567777776 46788888 33456777777774332 2221111 3455433221 21 3
Q ss_pred HHHHH--HhHHhHH-HHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCchhhhHH--H
Q psy10214 144 IAVWQ--NLLSDLQ-SCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLAR-QMEAFFLQKRFLLSALKPELIVKE--D 217 (415)
Q Consensus 144 IavWq--nLlsdfQ-scLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~AR-QLE~FFLQKrlllSa~KPe~vvKE--E 217 (415)
.+.|+ ++.+.|- .|=..|+.....+....++=.+.=+++.+.-|+|..+ +++...+..-+++=+.+|-.-++. |
T Consensus 360 mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~dl~~~rsylklyTt~P~kkla~F~D 439 (525)
T KOG3677|consen 360 MQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQADLPTIRSYLKLYTTLPVKKLASFLD 439 (525)
T ss_pred hhcCChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHhhhccchHHHHHHHHHHhccHHHhhhccC
Confidence 33343 3333333 3333344443333333444345557888889988875 666666655555556666554432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 218 IVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 218 I~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
..+-.+.--+-.-|.+||+-+=-.|.+--++++.
T Consensus 440 ~~d~~~dk~li~Ll~~khkm~nlv~~sg~s~~d~ 473 (525)
T KOG3677|consen 440 LTDQERDKFLIQLLVFKHKMKNLVWTSGPSDLDD 473 (525)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHhcCCccccc
Confidence 2222211122334677888777789887777754
No 399
>KOG3648|consensus
Probab=39.94 E-value=47 Score=37.99 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.5
Q ss_pred ccCCCC
Q psy10214 282 ISAMGG 287 (415)
Q Consensus 282 ~~~~~g 287 (415)
+.+|+|
T Consensus 52 ~~~~~~ 57 (1179)
T KOG3648|consen 52 QAGGGG 57 (1179)
T ss_pred ccCCCC
Confidence 334444
No 400
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.93 E-value=99 Score=29.49 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+++||++|..+|++.|.+..+.+.-......+..+|+.
T Consensus 125 L~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999988877766666666666654
No 401
>KOG0244|consensus
Probab=39.93 E-value=6.7e+02 Score=29.77 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=56.0
Q ss_pred hhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHH
Q psy10214 46 QGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVD 125 (415)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~e 125 (415)
+..|..|..+ +..|.++--+|.|+.+...-..=.-.|.|+-|-||+++.= --+.+ +....|.|+.+.+|..
T Consensus 271 dSkltrlLQd-slgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk-------~vvN~-d~~~~~~~~lK~ql~~ 341 (913)
T KOG0244|consen 271 DSKLTRLLQD-SLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNK-------PVVNQ-DPKSFEMLKLKAQLEP 341 (913)
T ss_pred HHHHHHHHHH-HhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccc-------ccccc-cHHHHHHHHHHHHHHH
Confidence 4566667776 6788888889999999988888888999999999998741 11111 4445555555556666
Q ss_pred HHHHHHHHH
Q psy10214 126 LRHDLARKE 134 (415)
Q Consensus 126 LR~ElaRKn 134 (415)
|+.|+..+.
T Consensus 342 l~~ell~~~ 350 (913)
T KOG0244|consen 342 LQVELLSKA 350 (913)
T ss_pred HHHHHHhhc
Confidence 666665553
No 402
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=39.78 E-value=2.5e+02 Score=25.17 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=41.4
Q ss_pred hhHhHhHHHHHHHHHHHHHHHH------HHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 73 DEIKLEIDQATLKFLDLARQME------AFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E------~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
-|+...|.+++.+|-|....+- .||||.-.-=| =| .+.++|.++..+...|+.+..
T Consensus 4 ~~~~~~~~~~~~~~se~i~~~ANEPSlgLYrlQeHvrks--lP------------~lv~~k~~v~~~~~~~~g~~~ 65 (118)
T PF10167_consen 4 PELEDKVKKVTERISENIHIVANEPSLGLYRLQEHVRKS--LP------------KLVELKKEVQELSQELQGACY 65 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH--hH------------HHHHHHHHHHHHHHHhcccee
Confidence 4677889999999999999875 59999865442 24 456778888887777766543
No 403
>KOG0978|consensus
Probab=39.74 E-value=6.4e+02 Score=29.02 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
-....-+..|+..+...++.+..++.+...-+++|+
T Consensus 537 t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQ 572 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555556555555555555554
No 404
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.58 E-value=1.7e+02 Score=27.17 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=24.1
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy10214 116 VNMVTKDIVDLRHDLARKEELIKRHYDKIAV 146 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaRKnaLLrkhy~KIav 146 (415)
+-.....|..|++|+..+|+.|+..-.++..
T Consensus 24 hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 24 HQENQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445668999999999999988887766543
No 405
>KOG1899|consensus
Probab=39.28 E-value=2.6e+02 Score=32.17 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
-|.+.|..|.-++++|+.+|.++..-..-.-||-..++.|
T Consensus 147 cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeL 186 (861)
T KOG1899|consen 147 CIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSEL 186 (861)
T ss_pred HHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHh
Confidence 3556667777778888888887633332223344444443
No 406
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=39.26 E-value=4.7e+02 Score=27.32 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=16.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHH
Q psy10214 176 IKLEIDQATLKFLDLARQMEAFFL 199 (415)
Q Consensus 176 IKv~VEq~tnRFLD~ARQLE~FFL 199 (415)
++-..|..+..++..+|+++.|.-
T Consensus 282 fK~qlE~ladqLl~ks~~id~f~t 305 (353)
T PF01540_consen 282 FKNQLENLADQLLEKSRQIDEFVT 305 (353)
T ss_pred HHHHHHHHHHHHHHhhcccchhee
Confidence 444566667777778888887653
No 407
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=39.10 E-value=2.8e+02 Score=30.54 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=25.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHH
Q psy10214 177 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDL 225 (415)
Q Consensus 177 Kv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~EL 225 (415)
..-+.+.+.+|++..++||+-+|+.|. .||.|+...+
T Consensus 101 e~Av~~~~~~~~~~f~~~dd~YlreRa------------~DI~Dv~~Rl 137 (575)
T PRK11177 101 DAAAHSVIEGQAKALEELDDEYLKERA------------ADVRDIGKRL 137 (575)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHH------------HHHHHHHHHH
Confidence 344677778888888888887776653 3666665553
No 408
>KOG0978|consensus
Probab=39.09 E-value=6.6e+02 Score=28.94 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=63.8
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHH
Q psy10214 116 VNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQME 195 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE 195 (415)
+|-.+++...|...++-...-...+-.+|....+-+..+++-+..|.++... .+..++-+-.+-+++.+-++
T Consensus 498 ~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~--------~~~~le~~kk~~~e~~~~~~ 569 (698)
T KOG0978|consen 498 HKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTT--------LTQSLEMLKKKAQEAKQSLE 569 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555545555545544444444444444444332211 12223333333445554444
Q ss_pred HHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 196 AFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 196 ~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
+||.++.-++-+.+++ +..++++..||..--.-.++.-+.++.-...|..+.
T Consensus 570 --~Lq~~~ek~~~~le~i-~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 570 --DLQIELEKSEAKLEQI-QEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred --HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555666666666 667777777776655555555666666666666654
No 409
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.83 E-value=3.5e+02 Score=28.09 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=16.0
Q ss_pred HhhhHHHHHHHhHHhHHHHhhhhhc
Q psy10214 139 RHYDKIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 139 khy~KIavWqnLlsdfQscLs~LSk 163 (415)
.++.-+..|.+.|+.+..++-.|+.
T Consensus 87 ~dF~~l~~yNdYLE~vEdii~nL~~ 111 (309)
T TIGR00570 87 EDFPSLREYNDYLEEVEDIVYNLTN 111 (309)
T ss_pred hccCCHHHHHHHHHHHHHHHHHhhc
Confidence 3445666777777777766666643
No 410
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=38.76 E-value=4.9e+02 Score=28.77 Aligned_cols=147 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHH
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQsc 157 (415)
.|+..+++.-++|.+| ++++.-+..+-..++.| .+++.+-++++..|.++|..+.++-.+=+.=+..|.+.
T Consensus 49 ~~~~~v~~l~~~~~~~-----~~~l~~~~~~t~~ll~~----~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~ 119 (618)
T PF06419_consen 49 RLQSDVDKLNSSCDQM-----QDRLSAAKSETSDLLEE----ASELREQKEELELKKKLLDAFLERFTLSEEEEDALTSG 119 (618)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC
Q ss_pred --------hhhhhccccccc-------ccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHH
Q psy10214 158 --------LQVLTKEDEVST-------TLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLR 222 (415)
Q Consensus 158 --------Ls~LSkqE~ser-------~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK 222 (415)
|..|.+-+.+ + ..+.--.-..+=..+++.++ ++.|..|- -++.+...+.
T Consensus 120 ~~~v~~~FF~~L~r~~~I-~~~c~~LL~~~~~~ag~~iM~~~~~~~e--~a~erl~~-------------w~q~e~~~l~ 183 (618)
T PF06419_consen 120 EEPVDDEFFDALDRVQKI-HEDCKILLSTENQRAGLEIMEQMSKYLE--RAYERLYR-------------WVQRECRSLN 183 (618)
T ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHHHH--HHHHHHHH-------------HHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy10214 223 HDLARKEELIKRHYDKIAV----WQNLLSDL 249 (415)
Q Consensus 223 ~ELqRKErLIqKh~eKIee----WQsvL~dl 249 (415)
.+--....+++++...+.+ |+.+|++.
T Consensus 184 ~~~~~~~~~l~~al~~L~~rp~lf~~~l~~~ 214 (618)
T PF06419_consen 184 LDNPEVSPLLRRALRYLRERPVLFNYCLDEF 214 (618)
T ss_pred hcCcccchHHHHHHHHHhcChHHHHHHHHHH
No 411
>KOG1853|consensus
Probab=38.74 E-value=4.7e+02 Score=27.15 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 217 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 217 EI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
-+.-|+.||+.|+.|+....+--++...+-++|.
T Consensus 148 rnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 148 RNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999888887777776666663
No 412
>KOG4677|consensus
Probab=38.60 E-value=5.9e+02 Score=28.29 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Q psy10214 214 VKEDIVDLRHDLARKE----ELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 214 vKEEI~dLK~ELqRKE----rLIqKh~eKIeeWQsvL~dlq~ 251 (415)
++.+|.++++++-+.+ ..|+.++++++.|.++...+.-
T Consensus 335 Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~ 376 (554)
T KOG4677|consen 335 LRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTL 376 (554)
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHH
Confidence 3667777776654443 3467888888999988877743
No 413
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=38.46 E-value=64 Score=31.51 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCCccchhHhhhhhhc-----cccCCCCC-----------CCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 40 GPGGLLQGPLAYLEKT-----TSNIGLPD-----------GRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL 103 (415)
Q Consensus 40 ~~~~~f~~~l~~~~~~-----~~~~~~~~-----------~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ 103 (415)
.-|..|..|+...+.. +....++. ..++...+.++-...++..|.+..++| +++.=|+..-..
T Consensus 41 ktr~s~~~~~~~~k~lk~~~ee~~~~~~~~~~~~~~~~~~~~s~k~~~s~~~~~~~~~li~k~r~v~-~~~~~~~~ns~~ 119 (221)
T PF10376_consen 41 KTRRSFNSCYSVAKRLKVENEENDQTFSEKPESSKEENCFQQSIKIIDSEEEENSSLKLIEKWRSVC-QAASSYLLNSSS 119 (221)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhccccccccccccccccccchhhhhhhhhhhhhhhhhcccCCcccc-hhhchhhhhhhh
Confidence 3467898998765432 11111111 112345666777777888888888888 445445544443
Q ss_pred HhhcCh----hHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 104 LSALKP----ELIVKEVNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 104 ls~~kp----e~i~ke~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
..-.+. +...+|+.. +-.+|.+++.+|+++|++
T Consensus 120 ~k~~~~g~~~~~~~~el~~---ek~kL~~q~~e~~e~lr~ 156 (221)
T PF10376_consen 120 PKIQKMGGYEELKQQELEE---EKRKLEKQVDEKEEELRR 156 (221)
T ss_pred hccccccccchhHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 333333 344455333 555666666666666653
No 414
>KOG4302|consensus
Probab=38.46 E-value=6.5e+02 Score=28.74 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=16.4
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFF 97 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fF 97 (415)
++++..-+..+..|.++-.|+|.+=
T Consensus 113 e~lr~qk~eR~~ef~el~~qie~l~ 137 (660)
T KOG4302|consen 113 EGLRKQKDERRAEFKELYHQIEKLC 137 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666777777777777643
No 415
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.36 E-value=3.9e+02 Score=26.10 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=48.3
Q ss_pred chhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHH
Q psy10214 45 LQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIV 124 (415)
Q Consensus 45 f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~ 124 (415)
|-.+|..+++..|..+ ..||+-.+ ++.+|..+-+.+++|+- .|...-.+.|+. -+.
T Consensus 42 F~~~L~ef~~~~f~~~----------~dDe~~~~---~l~kFs~~l~El~~~~~----~L~~q~~~~l~~-------pL~ 97 (215)
T cd07601 42 LSKKLGEYEKQKFELG----------RDDEILVS---TLKQFSKVVDELSTMHS----TLSSQLADTVLH-------PIS 97 (215)
T ss_pred HHHHHHHHHhhccCCC----------CCcHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHH
Confidence 5666777776655432 34666653 99999999999999953 222222222222 233
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHH
Q psy10214 125 DLRHDLARKEELIKRHYDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 125 eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQsc 157 (415)
..++|==+.=.-.||.|+|. |++...++...
T Consensus 98 ~F~k~Dl~~vKe~kK~FdK~--s~~~d~al~K~ 128 (215)
T cd07601 98 QFMESDLAEIMTLKELFKAA--SNDHDGVLSKY 128 (215)
T ss_pred HHHHHHhHHHHHHHHHHHHH--hHHHHHHHHHH
Confidence 33322222223467777775 55556555543
No 416
>KOG0717|consensus
Probab=38.21 E-value=5.6e+02 Score=28.41 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=36.4
Q ss_pred hHhHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 74 EIKLEIDQATLKFLDLARQM--------EAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~--------E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
+.+-.|++-+.|+++.||+. +.|--+++=..- .++...+. +...+|.|-.||+++..+...
T Consensus 182 ~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk-----~~l~~k~~---E~~r~kqe~~Rk~~~~~r~e~ 250 (508)
T KOG0717|consen 182 FTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVK-----AMLELKDA---EAYRSKQEESRKQQLRKRREY 250 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHH-----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888764 333333222221 13333233 666778899999987766553
No 417
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=38.07 E-value=11 Score=41.54 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcc
Q psy10214 114 KEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 114 ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkq 164 (415)
++++..+..+.+||.|+.||++.+.....++..-+.-+..++.-...|.+.
T Consensus 239 ~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~ 289 (713)
T PF05622_consen 239 VELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAE 289 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777655544445554444555566555555444
No 418
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=37.99 E-value=4.5e+02 Score=26.77 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=25.4
Q ss_pred cccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchh
Q psy10214 169 TTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPEL 212 (415)
Q Consensus 169 r~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~ 212 (415)
.-++-+||++-.. -+++--+.-|..|.||-+++ ..++.|+..
T Consensus 150 ~kl~mkei~tY~~-~fQ~~Qel~~RaEdy~kckI-~~~arK~~~ 191 (265)
T PF06409_consen 150 GKLAMKEIHTYKQ-MFQRMQELQQRAEDYYKCKI-APSARKPLD 191 (265)
T ss_pred cchHHHHHHHHHH-HHHHHHHHHHHHHHHHhccC-CccccchHH
Confidence 4456667766543 23444556678888888776 455555544
No 419
>KOG2391|consensus
Probab=37.96 E-value=2.8e+02 Score=29.51 Aligned_cols=42 Identities=12% Similarity=-0.003 Sum_probs=27.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHhc
Q psy10214 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAV---WQNL-LSDLQG 251 (415)
Q Consensus 210 Pe~vvKEEI~dLK~ELqRKErLIqKh~eKIee---WQsv-L~dlq~ 251 (415)
-++.+++.+++|++++++.|+-+....+.|+- |... |+++++
T Consensus 240 t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 240 TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 45566888888888888888776666555544 5443 444444
No 420
>KOG3543|consensus
Probab=37.93 E-value=3.2e+02 Score=31.69 Aligned_cols=106 Identities=25% Similarity=0.408 Sum_probs=62.7
Q ss_pred CCCccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHH--HHHHHHHHHHHHHHHHHHHh---hcChhHHHH
Q psy10214 40 GPGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLK--FLDLARQMEAFFLQKRFLLS---ALKPELIVK 114 (415)
Q Consensus 40 ~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~k--Fid~Arq~E~fFLqkr~~ls---~~kpe~i~k 114 (415)
||.|-+...|..|+.. +-| +-+.++..||+|.-|.+|..+ .+...|-.|--=+-+|+..+ +.|-|.+|.
T Consensus 735 rpegalkatlsllerv-----lmk-divtpvp~eevk~virkcle~aalvnytrl~eyakiee~m~~a~~~a~kled~ir 808 (1218)
T KOG3543|consen 735 RPEGALKATLSLLERV-----LMK-DIVTPVPPEEVKAVIRKCLEDAALVNYTRLCEYAKIEERMGIAVSPAQKLEDMIR 808 (1218)
T ss_pred CcchHHHHHHHHHHHH-----HHH-hcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 6777788888777654 111 235677899999988877643 34444544444444454432 333343332
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 115 EVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 115 e~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
+.||=.|+-..|+. .|-+-.+-|.+|+++--..|=+|
T Consensus 809 --------laelcievlqqnee--hhgeafawwsdll~ehae~fwsl 845 (1218)
T KOG3543|consen 809 --------LAELCIEVLQQNEE--HHGEAFAWWSDLLSEHAEIFWSL 845 (1218)
T ss_pred --------HHHHHHHHHHhhhh--hcchHHHhHHHHHHHHHHHHHHH
Confidence 24555555555542 35557888888888776666555
No 421
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.88 E-value=2.7e+02 Score=24.12 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 179 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 179 ~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
-++.+.-+++..|+-+=.|.|--+- .+-..+..++.+++...+-+++...++.+|+.-++.+.
T Consensus 52 ~~dp~~~klfrLaQl~ieYLl~~q~---------~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 52 FVDPNFLKLFRLAQLSIEYLLHCQE---------YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554445555555555556663322 22445777777777777777777777777777776664
No 422
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=37.83 E-value=2e+02 Score=26.84 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~ 247 (415)
+..+++|+.+|++.-+|.++..++|++-+..|+
T Consensus 101 ~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~ 133 (173)
T PF07445_consen 101 RKPIHQLYQRLAQHQEYERRLLAMIQEREQQLE 133 (173)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777766555444
No 423
>KOG0245|consensus
Probab=37.46 E-value=47 Score=39.41 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=42.5
Q ss_pred hhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHH
Q psy10214 46 QGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEA 95 (415)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~ 95 (415)
+..|--|-|+ ..-|.+|--||-......|..+=--+|.||-|-||++=+
T Consensus 302 DSVLTWLLkE-nLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~ 350 (1221)
T KOG0245|consen 302 DSVLTWLLKE-NLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVN 350 (1221)
T ss_pred HHHHHHHHHH-hcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhc
Confidence 5667777776 888999999999999999999999999999999999743
No 424
>KOG2216|consensus
Probab=37.44 E-value=61 Score=33.39 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=38.2
Q ss_pred hhchhHHHHHHHHH-HHHHHHHHHhhhHHHHHHHhHHhHHHHhh-hhhccccc
Q psy10214 117 NMVTKDIVDLRHDL-ARKEELIKRHYDKIAVWQNLLSDLQSCLQ-VLTKEDEV 167 (415)
Q Consensus 117 n~~~~di~eLR~El-aRKnaLLrkhy~KIavWqnLlsdfQscLs-~LSkqE~s 167 (415)
++-|+++.++++|| .||++||..+..|-+-.+.+-..|+++.. ++.++|.+
T Consensus 150 lkQRk~L~~~~~eLl~~K~~Ll~di~~k~~~l~sl~p~L~tl~kas~PVqe~l 202 (303)
T KOG2216|consen 150 LKQRKELSKLYQELLSRKAALLSDIKAKKNRLQSLDPKLQTLLKASLPVQEYL 202 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhHHHHh
Confidence 45577888888775 78999999999998777777777777766 35555544
No 425
>KOG1265|consensus
Probab=37.31 E-value=8.2e+02 Score=29.54 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy10214 182 QATLKFLDLARQMEA 196 (415)
Q Consensus 182 q~tnRFLD~ARQLE~ 196 (415)
.+|.+|++.-+.|+.
T Consensus 1128 s~i~~~V~e~krL~~ 1142 (1189)
T KOG1265|consen 1128 SNIKEFVEERKRLAE 1142 (1189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 426
>KOG4677|consensus
Probab=37.28 E-value=6.2e+02 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q psy10214 124 VDLRHDLARKEELIKRHYDKIAVW 147 (415)
Q Consensus 124 ~eLR~ElaRKnaLLrkhy~KIavW 147 (415)
..++-++..-+.||++--+.+.+.
T Consensus 182 SQlkvrlqe~~~ll~~Rve~le~~ 205 (554)
T KOG4677|consen 182 SQLKVRLQEVRRLLKGRVESLERF 205 (554)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHH
Confidence 345566666666776666655444
No 427
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=37.23 E-value=2.6e+02 Score=27.75 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=27.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q psy10214 177 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKE 229 (415)
Q Consensus 177 Kv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKE 229 (415)
..-+...+.||+...+.+|.---.. ....+..--+++..+|.+..+++
T Consensus 213 E~aL~~a~~Kf~rR~~~vE~~~~~~-----g~~~~~~s~ee~~~~W~~aK~~e 260 (262)
T PRK09562 213 EAALRKANAKFERRFRAVEQLAAAQ-----GKTLEDASLEEMDALWQEAKRQE 260 (262)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHc-----CCCCCcCCHHHHHHHHHHHHHhc
Confidence 3446677788887666665322211 11123334568889998877654
No 428
>PF14629 ORC4_C: Origin recognition complex (ORC) subunit 4 C-terminus
Probab=37.13 E-value=2.4e+02 Score=25.80 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=32.8
Q ss_pred hcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 106 ALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 106 ~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
.......+++||. -|.++-++- .-.++|+++|.-...+..+...+-..+..|
T Consensus 18 ~~~~~~~~~~WN~---~I~~l~~~~-~~~~~L~~~~~~~~~~~~l~~~~~~~v~~l 69 (203)
T PF14629_consen 18 SLPDPSYVKQWNK---SIESLLKDS-NVKRLLRKLYYTSKSIRSLKNSLIPAVSRL 69 (203)
T ss_pred cccchHHHHHHHH---HHHHHHcCh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Confidence 3455678899999 666665555 666888888886544444444443333334
No 429
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.98 E-value=6.9e+02 Score=28.59 Aligned_cols=13 Identities=31% Similarity=0.255 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHhh
Q psy10214 193 QMEAFFLQKRFLL 205 (415)
Q Consensus 193 QLE~FFLQKrlll 205 (415)
.++....+.+-.+
T Consensus 604 ~l~~~~~~l~~~~ 616 (908)
T COG0419 604 ELEERLSQLEELL 616 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 430
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=36.98 E-value=1.5e+02 Score=30.38 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy10214 233 KRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 233 qKh~eKIeeWQsvL~dlq~ 251 (415)
.+|.+=+..|.++|++|+.
T Consensus 179 ~~hveWvks~~~l~~~L~~ 197 (312)
T PF01213_consen 179 PKHVEWVKSFKALLKELQA 197 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3455556667778888755
No 431
>KOG4673|consensus
Probab=36.95 E-value=7.5e+02 Score=29.01 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=19.6
Q ss_pred CCCCchhhHhHhHHHHHHHHHHHHHHHH
Q psy10214 67 LSPLEKDEIKLEIDQATLKFLDLARQME 94 (415)
Q Consensus 67 ~~~~~k~E~~~~veq~~~kFid~Arq~E 94 (415)
++|.+.|.+-+++|++..+.-.+-..+|
T Consensus 336 ~n~~~~d~~q~eLdK~~~~i~~Ln~~le 363 (961)
T KOG4673|consen 336 TNVSDSDDVQLELDKTKKEIKMLNNALE 363 (961)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888999988876444433343
No 432
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=36.89 E-value=8.5e+02 Score=29.62 Aligned_cols=159 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAF--FLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNL 150 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~f--FLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnL 150 (415)
|+++..++..-.+--.+-+-...| |++..+...+..-=..-+++.....++.+++.++.+.++.+.+.-.++..-+.=
T Consensus 233 ~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 312 (1353)
T TIGR02680 233 DEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALERE 312 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHH
Q psy10214 151 LSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEE 230 (415)
Q Consensus 151 lsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKEr 230 (415)
++.++..+..|...+......+-++.+..++.....+-+....++.. -++.... +.+++++.......+.
T Consensus 313 ~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a-~~~~e~~---------~~~~~~~~~r~~~~~~ 382 (1353)
T TIGR02680 313 ADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREA-ESRLEEE---------RRRLDEEAGRLDDAER 382 (1353)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy10214 231 LIKRHYDKIAV 241 (415)
Q Consensus 231 LIqKh~eKIee 241 (415)
-++...+.+..
T Consensus 383 ~l~~~~~el~~ 393 (1353)
T TIGR02680 383 ELRAAREQLAR 393 (1353)
T ss_pred HHHHHHHHHHH
No 433
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=36.86 E-value=5.8e+02 Score=27.63 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=9.8
Q ss_pred CCCchhhHhHhHHHHHHHH
Q psy10214 68 SPLEKDEIKLEIDQATLKF 86 (415)
Q Consensus 68 ~~~~k~E~~~~veq~~~kF 86 (415)
+..++|.++..|.....+-
T Consensus 5 ~~l~~edl~~~I~~L~~~i 23 (593)
T PF06248_consen 5 GPLSKEDLRKSISRLSRRI 23 (593)
T ss_pred CCCCHhHHHHHHHHHHHHH
Confidence 4556666665555433333
No 434
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=36.80 E-value=6.1e+02 Score=27.87 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhh
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs 159 (415)
.+.++|---.+-+.++.+.+.-+.....++..+..|+.
T Consensus 262 ~l~~lkL~~k~id~Lv~~lr~~~~rIr~~Er~i~~~~~ 299 (619)
T PRK05658 262 ELKSLRLTSKQIDELVEQLRDINKRVRGQERELLRLVE 299 (619)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555555555555544
No 435
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.80 E-value=3.9e+02 Score=25.62 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH
Q psy10214 79 IDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 155 (415)
Q Consensus 79 veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ 155 (415)
|..++.||.++.+.+++|..-- + .+-|.++.+ -+...+++-=|.=.-.||+|+|. |+++..++-
T Consensus 59 i~~~L~kF~~~l~ei~~~~~~l---~--~q~e~~l~~------pL~~F~k~dL~~~KE~rK~Fdk~--se~yd~al~ 122 (200)
T cd07637 59 ISECLDKFGDSLQEMVNYHMIL---F--DQAQRSVRQ------QLHSFVKEDVRKFKETKKQFDKV--REDLEIALV 122 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHH
Confidence 7788899999999999996432 2 334444444 44444444334444667778776 444444443
No 436
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.56 E-value=1.4e+02 Score=29.70 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 127 RHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 127 R~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
+++..+.|+.|+++=.-|..|-+|.+ ||..+...
T Consensus 2 ~~r~~el~~~v~~~P~di~~Wl~li~-~Qd~~~~~ 35 (321)
T PF08424_consen 2 RKRTAELNRRVRENPHDIEAWLELIE-FQDELFRL 35 (321)
T ss_pred chHHHHHHHHHHhCcccHHHHHHHHH-HHHHhccc
Confidence 45666777888888888999987654 66554443
No 437
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=36.55 E-value=7.3e+02 Score=28.76 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHY 236 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~ 236 (415)
.+..||.+|+..|+-.+.-..-.+
T Consensus 131 ~~e~~~~~l~~~l~~~eken~~Lk 154 (769)
T PF05911_consen 131 QAEAEIEDLMARLESTEKENSSLK 154 (769)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666554444333333
No 438
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=36.53 E-value=5.1e+02 Score=30.15 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCh-----hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHH
Q psy10214 82 ATLKFLDLARQMEAFFLQKRFLLSALKP-----ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156 (415)
Q Consensus 82 ~~~kFid~Arq~E~fFLqkr~~ls~~kp-----e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQs 156 (415)
.+...|=..-+++.-|.=-=+.+..-+| .+|+.||=.++.|+...|.+ -.|+|--.++++...|+-++..
T Consensus 314 ~vln~Lfk~T~LQ~~f~~nm~ai~~~~P~~~~L~~iL~~~~~hr~~vi~rR~~-----~~L~Ka~~R~hileGl~~a~~~ 388 (804)
T COG0188 314 VVLNNLFKLTDLQTSFNVNMLALVNGRPKVLNLKEILSEFLEHRLEVVTRRTE-----YELNKAEERLHILEGLLIALLN 388 (804)
T ss_pred HHHHHHHHhchHHhhhCceeEEecCCcceecCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555566677777655555554444 46778877777666655443 3455556677777777776664
Q ss_pred Hhhh--hhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHH
Q psy10214 157 CLQV--LTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKR 234 (415)
Q Consensus 157 cLs~--LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqK 234 (415)
+=.. |.... -+..+.+..+ +.+|----.|-+++.--+--.++.+ ...-+.+|.++|..+++..+++|..
T Consensus 389 iDevI~iIr~s-----~~~~~a~~~L---~~~f~lse~Qa~aIl~mrL~rLt~l-e~~~i~~E~~~L~~~i~~l~~iL~s 459 (804)
T COG0188 389 IDEVIEIIRES-----KDKPEAKEEL---MARFGLSEKQAEAILDLRLRRLTGL-EEEKIEKELKELEKEIADLEKILAS 459 (804)
T ss_pred hHHHHHHHHcC-----CCchHHHHHH---HHHcCCcHHHHHHHHhhhHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4332 21111 1223333332 3455111123333222111122222 2224466777777777777777777
Q ss_pred HHHHHHHHHHHHHHHh
Q psy10214 235 HYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 235 h~eKIeeWQsvL~dlq 250 (415)
..+.....+..|..+.
T Consensus 460 ~~~~~~~i~~eL~~~~ 475 (804)
T COG0188 460 EERLLDIIKKELLEIK 475 (804)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666666666653
No 439
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=36.44 E-value=1.2e+02 Score=26.59 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=49.7
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchh--hhHHHHHHHHHHHHHHHHHHH
Q psy10214 173 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSA-LKPEL--IVKEDIVDLRHDLARKEELIK 233 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa-~KPe~--vvKEEI~dLK~ELqRKErLIq 233 (415)
+.|+...|.-.|..+++..=..|.|-.+.+..++. .+|.. .+|..+..|++++..+.+.|+
T Consensus 21 qpe~~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~lns~~qP~lvPFLK~slp~Lr~~l~~~~~~i~ 84 (92)
T smart00549 21 QPEVAERVRTLVLGLVNGTITAEEFTSRLQEALNSPLQPYLIPFLKNSLPLLRRELLHCARLIE 84 (92)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCCCchhHHHHHHhhHHHHHHHHHHHHHhc
Confidence 46788888888889988888899998876665544 66776 679999999999999888775
No 440
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=36.30 E-value=6.4e+02 Score=28.45 Aligned_cols=152 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcChhHHHHhhhhchhHHHHHHHH-HHHHHHHHHHhhhHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAF---FLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD-LARKEELIKRHYDKIAV 146 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~f---FLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~E-laRKnaLLrkhy~KIav 146 (415)
+.+|++.-++.....|-++++..+.| .-.-........|..+.-- -.+-|.-. ...|.+||...
T Consensus 118 ~~~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~~~dp~~Lad~------ia~~L~l~~~~eKQ~LLE~~------ 185 (775)
T TIGR00763 118 DDEEIKALTREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADF------VAASLQLKEKDELQEVLETV------ 185 (775)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhccCCHHHHHHH------HHHhcCCCcHHHHHHHHhcC------
Q ss_pred HHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHH
Q psy10214 147 WQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLA 226 (415)
Q Consensus 147 WqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELq 226 (415)
++.+-++-++..|..+- +-.+++..|...+++=++ ++=..||| +|-+..++.||-
T Consensus 186 --d~~~RL~~l~~lL~~el------e~l~l~~~I~~~v~~~~~--~~qr~~~L---------------reqlk~i~~eLg 240 (775)
T TIGR00763 186 --NIEKRLKKALELLKKEL------ELLKLQNKITKKVEEKME--KTQREYYL---------------REQLKAIKKELG 240 (775)
T ss_pred --CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH--HHHHHHHH---------------HHHHHHHHHhhC
Q ss_pred H---HHHHHHHHHHHHHH-------HHHHHHHHhcccCCCCCC
Q psy10214 227 R---KEELIKRHYDKIAV-------WQNLLSDLQGWAKSPAHQ 259 (415)
Q Consensus 227 R---KErLIqKh~eKIee-------WQsvL~dlq~~~~spaq~ 259 (415)
. .+.-++++.+||++ .+.+.+++....+.+...
T Consensus 241 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 283 (775)
T TIGR00763 241 IEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSS 283 (775)
T ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC
No 441
>PF15573 Imm27: Immunity protein 27
Probab=36.19 E-value=1.6e+02 Score=29.70 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHH
Q psy10214 193 QMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEE 230 (415)
Q Consensus 193 QLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKEr 230 (415)
.+++|+++..+.+ |-.++|+-+.++.....+++.
T Consensus 168 d~~~YYy~~~laF----pGdLtk~l~~rv~iAa~~~e~ 201 (259)
T PF15573_consen 168 DTDCYYYQQNLAF----PGDLTKELMQRVMIAANKEEK 201 (259)
T ss_pred CccceehhcCCCC----chHHHHHHHHHHHHHhccccc
Confidence 5666666555444 677777777777766555543
No 442
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=36.19 E-value=4.2e+02 Score=25.87 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----HHHHHHHh---HHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYD----KIAVWQNL---LSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQM 194 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~----KIavWqnL---lsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQL 194 (415)
-+..+..||.|-+.+|++-+- -|.--.++ ..+|-.+|..+...--....+| ||.- +...+.+|++.-..+
T Consensus 3 ~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~d-de~~--i~~sl~ef~~~~~el 79 (207)
T cd07635 3 RIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETD-DERC--IDASLQEFSNFLKNL 79 (207)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-hhHH--HHHHHHHHHHHHHHH
Confidence 456677777777777766443 12111122 2234455555543210001222 2222 356677777776666
Q ss_pred HHHHH--HHHHhhhccC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 195 EAFFL--QKRFLLSALK-PELIVKEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 195 E~FFL--QKrlllSa~K-Pe~vvKEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
+.+.- -..+.-+... -+..+|++|...+..-.+-|+.-++|..-+
T Consensus 80 ~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al 127 (207)
T cd07635 80 EEQREIMALNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLL 127 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66541 0000000011 123556666666555444444444443333
No 443
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.08 E-value=6.7e+02 Score=28.17 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhc
Q psy10214 132 RKEELIKRHYDKIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 132 RKnaLLrkhy~KIavWqnLlsdfQscLs~LSk 163 (415)
++++.|..--.++..|++-..|...++..+.+
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqs 150 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQS 150 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444444334555566655666666665533
No 444
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=35.97 E-value=12 Score=40.62 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhc
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRH--------YDKIAVWQNLLSDLQG 251 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh--------~eKIeeWQsvL~dlq~ 251 (415)
-+...|..||..|+--+.-.... .+-|+.|+.-|+-|+.
T Consensus 232 ~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~ 278 (619)
T PF03999_consen 232 ELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEE 278 (619)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHH
Confidence 44667888887776443333311 3445556666665543
No 445
>KOG4721|consensus
Probab=35.97 E-value=83 Score=35.91 Aligned_cols=40 Identities=28% Similarity=0.526 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-HHHHHHHhHHhHHHHhhhh
Q psy10214 122 DIVDLRHDLARKEELIKRHYD-KIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~-KIavWqnLlsdfQscLs~L 161 (415)
|+...|.|.=|--.=||+||+ |+.-=.+|-..|+.|+..|
T Consensus 411 elirrR~eelrHa~DIR~~YE~KLertN~ly~eLs~cm~qL 451 (904)
T KOG4721|consen 411 ELIRRRREELRHALDIREHYERKLERTNNLYMELSACMLQL 451 (904)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788999999 7888888899999999988
No 446
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=35.96 E-value=5e+02 Score=27.27 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=23.4
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLL 104 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~l 104 (415)
-|+|...+....+.=+.|+|+-+ +|||++.
T Consensus 210 ~~lr~~~~~~~~~L~~~a~QfRa--IQrrlL~ 239 (377)
T PF14728_consen 210 FELRQELKELEEELDERAQQFRA--IQRRLLT 239 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 35677777777788888999888 8998873
No 447
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=35.69 E-value=3.8e+02 Score=30.19 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEA----------FFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~----------fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
+.+..++.....+|+.+.+.+|. +++-.+...-.---+ .|.. ++.+|++....+.+.++..+.
T Consensus 321 ~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~-~L~s------e~q~L~~~~~~r~e~~~~Lq~ 393 (632)
T PF14817_consen 321 DALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLN-ALRS------ECQRLKEAAAERQEALRSLQA 393 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHhHHhHHHHhhhhhc
Q psy10214 143 ---KIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 143 ---KIavWqnLlsdfQscLs~LSk 163 (415)
+|..|+.+.+..|..++.|.+
T Consensus 394 K~q~I~~frqlv~e~QeqIr~LiK 417 (632)
T PF14817_consen 394 KWQRILDFRQLVSEKQEQIRALIK 417 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 448
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.66 E-value=1.7e+02 Score=31.30 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred CCCCccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhh
Q psy10214 39 MGPGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNM 118 (415)
Q Consensus 39 ~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~ 118 (415)
-+....|.....++.....+... ...+..+....+..+.+|=.++.+++.--..-. ..-+..|.|.|.
T Consensus 115 ~gl~~~l~~ff~a~~~la~~P~~-------~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~-----~~i~~~V~~iN~ 182 (507)
T PRK07739 115 TGLNKVLDQFWNSLQELSKNPEN-------LGARSVVRQRAQALAETFNYLSQSLTDIQNDLK-----SEIDVTVKEINS 182 (507)
T ss_pred chHHHHHHHHHHHHHHHHhCcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 34444455555555544222211 124566666666677777777777766433332 233667778888
Q ss_pred chhHHHHHHHHHHHHH
Q psy10214 119 VTKDIVDLRHDLARKE 134 (415)
Q Consensus 119 ~~~di~eLR~ElaRKn 134 (415)
.-++|.+|.++|.+.+
T Consensus 183 ll~~Ia~LN~~I~~~~ 198 (507)
T PRK07739 183 LASQISDLNKQIAKVE 198 (507)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888877654
No 449
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=35.65 E-value=44 Score=35.03 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=32.8
Q ss_pred HHHhhh-HHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHH
Q psy10214 137 IKRHYD-KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLA 191 (415)
Q Consensus 137 Lrkhy~-KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~A 191 (415)
|..-|+ -|..|+-.-.-||.-|+.|..-.=++...+-...+....++|.+||.++
T Consensus 157 Ls~Wy~~~v~~i~R~V~lfqekLafLLHAaLS~~pveV~~sd~~tK~DI~rFl~a~ 212 (353)
T PF15053_consen 157 LSNWYEECVCYIQRCVDLFQEKLAFLLHAALSYTPVEVKNSDSRTKKDIIRFLEAA 212 (353)
T ss_pred HHHHHHHhhhhHHHHHHHHhchhHHHHHHHhcCCeeEEecchHHHHHHHHHHHHHh
Confidence 333344 4777777777788777765322212222333334455678899999988
No 450
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=35.26 E-value=5.5e+02 Score=27.91 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=49.6
Q ss_pred CCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 69 PLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 69 ~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
...+.++-.+.|..+.|+=||=..||+ |.|=...--.+|---- .-.+++||..+++||.+-.+-|+++.-
T Consensus 209 e~~k~kL~~~Sd~lltkVDDLQD~vE~--LRkDV~~RgVRp~~~q--Le~v~kdi~~a~keL~~m~~~i~~eKP 278 (426)
T smart00806 209 ESSKKKLSEDSDSLLTKVDDLQDIIEA--LRKDVAQRGVRPSKKQ--LETVQKELETARKELKKMEEYIDIEKP 278 (426)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 456788888999999999999999998 4554444444442222 224556788888999888888877654
No 451
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=35.25 E-value=4.4e+02 Score=25.78 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=16.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHH--HHHHHH
Q psy10214 215 KEDIVDLRHD----LARKEELIKRHYDKIAV--WQNLLS 247 (415)
Q Consensus 215 KEEI~dLK~E----LqRKErLIqKh~eKIee--WQsvL~ 247 (415)
.-|+.+++++ .+|.-..+.-.++.+.. |..++.
T Consensus 122 ~~e~e~~~~q~~~~~~rl~~~~~~ql~~~~~~~~~~~~~ 160 (212)
T COG3599 122 AQELEDLKRQAQVERQRLRSDIEAQLASAKQEDWDEILR 160 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHh
Confidence 3345555444 33333444444444433 877776
No 452
>KOG1684|consensus
Probab=35.24 E-value=31 Score=36.62 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 79 IDQATLKFLDLARQMEAFFLQKRFLLS 105 (415)
Q Consensus 79 veq~~~kFid~Arq~E~fFLqkr~~ls 105 (415)
|+-++.+|-+.| .-|.|++..++.+-
T Consensus 244 I~~~l~~y~~~~-~~~~~~~~~~~~~i 269 (401)
T KOG1684|consen 244 INETLEKYASPA-KDESFSLSLKLDVI 269 (401)
T ss_pred HHHHHHHhcccC-CCccccchhhHHHH
Confidence 888888998888 67778777766553
No 453
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=35.12 E-value=2.3e+02 Score=29.07 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=41.6
Q ss_pred CCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q psy10214 61 LPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH 140 (415)
Q Consensus 61 ~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh 140 (415)
+.++.-|-..|.++.+..++++-.......++++.-....+ .+-.++...+.++...+.++.|.+.|.++.
T Consensus 83 VkkGqvL~~LD~~~~~~~l~~A~a~l~~a~~~~~~~~~~~~---------~~~a~l~~a~a~l~~a~~~~~R~~~L~~~g 153 (390)
T PRK15136 83 VKEGDVLVTLDPTDAEQAFEKAKTALANSVRQTHQLMINSK---------QYQANIELQKTALAQAQSDLNRRVPLGNAN 153 (390)
T ss_pred ECCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44555556778888887777766655443333322221111 000111112224445556666666666666
Q ss_pred hhHHHHHHHhHHhH
Q psy10214 141 YDKIAVWQNLLSDL 154 (415)
Q Consensus 141 y~KIavWqnLlsdf 154 (415)
+.....+++...++
T Consensus 154 ~iS~~~ld~a~~~~ 167 (390)
T PRK15136 154 LIGREELQHARDAV 167 (390)
T ss_pred CcCHHHHHHHHHHH
Confidence 55555554444433
No 454
>KOG3758|consensus
Probab=35.10 E-value=4.4e+02 Score=30.06 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhhh--------HHHHHHHhHHhHHHHhhhhhcc
Q psy10214 124 VDLRHDLARKEELIKRHYD--------KIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 124 ~eLR~ElaRKnaLLrkhy~--------KIavWqnLlsdfQscLs~LSkq 164 (415)
-.||.++.|+.-+|.++|. .+.-+++...+.++|...+.++
T Consensus 52 RnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ 100 (655)
T KOG3758|consen 52 RNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSN 100 (655)
T ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777666666555 3444555555666666655444
No 455
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=35.08 E-value=6.6e+02 Score=27.80 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=25.0
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPEL 111 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~ 111 (415)
+.|..-.+|-..+++=+.-+-.||.+|-.+-..|...+.+.
T Consensus 27 ~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di 67 (701)
T PF09763_consen 27 ESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDI 67 (701)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666677778888777776665555433
No 456
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=35.03 E-value=1e+02 Score=27.55 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=22.5
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 117 NMVTKDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
|-.-.+|.+++.|++|.++.+++.-.+|..|-
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~ 37 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIARIKEWY 37 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888888887777777776663
No 457
>KOG4643|consensus
Probab=34.99 E-value=9.1e+02 Score=29.39 Aligned_cols=94 Identities=19% Similarity=0.336 Sum_probs=50.8
Q ss_pred chhhHhHhHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhH---HH
Q psy10214 71 EKDEIKLEIDQATL--KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDK---IA 145 (415)
Q Consensus 71 ~k~E~~~~veq~~~--kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~K---Ia 145 (415)
.+.+.+..|+-++. |.--+-.+||.=| |.++. .+.++.++++|+.+++..+.+...- ..
T Consensus 169 ~~~~~hL~velAdle~kir~LrqElEEK~------------enll~----lr~eLddleae~~klrqe~~e~l~ea~ra~ 232 (1195)
T KOG4643|consen 169 VKKNLHLEVELADLEKKIRTLRQELEEKF------------ENLLR----LRNELDDLEAEISKLRQEIEEFLDEAHRAD 232 (1195)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555555555443 4555556677655 22222 1348888888888888777666652 22
Q ss_pred HHHHhHHhHH-HHhhhhhcccccccccchhhHhHhHHH
Q psy10214 146 VWQNLLSDLQ-SCLQVLTKEDEVSTTLEKDEIKLEIDQ 182 (415)
Q Consensus 146 vWqnLlsdfQ-scLs~LSkqE~ser~~DqdEIKv~VEq 182 (415)
.+-+=++++. ...+.- ...-++..|.+.++..|+-
T Consensus 233 ~yrdeldalre~aer~d--~~ykerlmDs~fykdRvee 268 (1195)
T KOG4643|consen 233 RYRDELDALREQAERPD--TTYKERLMDSDFYKDRVEE 268 (1195)
T ss_pred hhhhHHHHHHHhhhcCC--CccchhhhhhHHHHHHHHH
Confidence 2212222222 221111 1233457788888888873
No 458
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=34.95 E-value=1.5e+02 Score=29.68 Aligned_cols=169 Identities=12% Similarity=0.210 Sum_probs=82.1
Q ss_pred CchhhHhHhHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcChh--HHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh---
Q psy10214 70 LEKDEIKLEIDQATLKFL--DLARQMEAFFLQKRFLLSALKPE--LIVKEVNMVTKDIVDLRHDLARKEELIKRHYD--- 142 (415)
Q Consensus 70 ~~k~E~~~~veq~~~kFi--d~Arq~E~fFLqkr~~ls~~kpe--~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~--- 142 (415)
.+.|+|+.=++.|..++. +.=+.|+.++-.-.|.+..++-. .+|+. +.+-+..+..-+...+.++.-.|.
T Consensus 126 ~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~f~~~~~~~~~~~il~~---~~~i~~~led~~~~L~~m~~S~~~~~~ 202 (408)
T PF08393_consen 126 DHEDKIEEISEQAQKEYKIEQSLEKIKEEWKNMEFEFVPYKDKDVFILKN---WDEIIQQLEDHLLTLQSMKSSPFVKPF 202 (408)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-B-EEEEETTT-CEEEE----CHHHHHHHHHHHHHHHHTCSSTTTTCC
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhceeeeeccccchhheecc---hHHHHHHHHHHHHHHhcccccchhHHH
Confidence 356666666666655541 12234445554455555555542 22322 223444444444554544433332
Q ss_pred --HHHHHHHhHHhHHHHhhhhhcc-c---ccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCchhhh
Q psy10214 143 --KIAVWQNLLSDLQSCLQVLTKE-D---EVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF--LLSALKPELIV 214 (415)
Q Consensus 143 --KIavWqnLlsdfQscLs~LSkq-E---~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrl--llSa~KPe~vv 214 (415)
++..|.+.+..++.+|..+..- . .++..-...|++..+.....+|-...+..-.+--...- .+-..+...-+
T Consensus 203 ~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~v~~~~~~~~~ 282 (408)
T PF08393_consen 203 RDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSSDIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPNVLSVCSNPDL 282 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-CCHHHCCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcChHHHHHHHHHHhCcchhHHhhHhhH
Confidence 6778887777777776654221 1 11111112255555555555554433322222211100 00111112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
.+.+..+...|+++.+-|..|.++-+.
T Consensus 283 ~~~l~~~~~~l~~i~k~L~~~Le~kR~ 309 (408)
T PF08393_consen 283 LEKLESINESLEKIQKSLNDYLESKRE 309 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 677888888888888888888877655
No 459
>KOG2010|consensus
Probab=34.88 E-value=1.6e+02 Score=31.16 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=23.3
Q ss_pred hhHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 109 PELIVKEVNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 109 pe~i~ke~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
--++..|+|+|-=++.-||.+|.+|++-|..
T Consensus 135 naQLDNEKsnl~YqVDtLKD~LeE~eeqLae 165 (405)
T KOG2010|consen 135 NAQLDNEKNNLIYQVDTLKDVLEEQEEQLAE 165 (405)
T ss_pred HHhhcccccceeeeHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888876543
No 460
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=34.88 E-value=1.3e+02 Score=26.43 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHhhhhc-hhHHHHHHHHHHHHHHHHHH
Q psy10214 111 LIVKEVNMV-TKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 111 ~i~ke~n~~-~~di~eLR~ElaRKnaLLrk 139 (415)
.++...|.. ++||.+|+..|.+.++.|++
T Consensus 85 ~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 85 QALNRLNIPSREEIEALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555543 35889999999988887765
No 461
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=34.87 E-value=6.3e+02 Score=28.13 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhh-HHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10214 129 DLARKEELIKRHYD-KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSA 207 (415)
Q Consensus 129 ElaRKnaLLrkhy~-KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa 207 (415)
|..-++.+|+.||. ||..| ...+|-+ +=.+..|-+.+++|-.-+-.......+
T Consensus 406 E~esRE~LIk~~Y~~RI~eL---t~qlQ~a-----------------------dSKa~~f~~Ec~aL~~rL~~aE~ek~~ 459 (518)
T PF10212_consen 406 EEESREQLIKSYYMSRIEEL---TSQLQHA-----------------------DSKAVHFYAECRALQKRLESAEKEKES 459 (518)
T ss_pred chhhHHHHHHHHHHHHHHHH---HHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 208 LKPEL-IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 248 (415)
Q Consensus 208 ~KPe~-vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~d 248 (415)
...+. .+...|+.|..||..-.+=-+....-+.++-..++|
T Consensus 460 l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNe 501 (518)
T PF10212_consen 460 LEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNE 501 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 462
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.87 E-value=2.2e+02 Score=22.31 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=37.0
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
++...=..|+..+...-++-+|||. .+... |-. +.+.+...+.+.|.++.+...-|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~-------E~~~~-p~s---~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMEL-------EVRSL-PPS---ERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHCTS--HH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhC-CHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777888889999999999983 44333 322 233344477777777776655554
No 463
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=34.85 E-value=3.8e+02 Score=24.97 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 180 IDQATLKFLDLARQMEAFFLQKRFLLSALK--PELIVKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 180 VEq~tnRFLD~ARQLE~FFLQKrlllSa~K--Pe~vvKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
+++...+.-++-|.|..-.-.+...+..-. ....+..+|..++..+.||-..|.+.-++|+.
T Consensus 107 Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~ 170 (173)
T PF07445_consen 107 LYQRLAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEKIEEQIQR 170 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777877777776665555444322 33356788999999999999999988888864
No 464
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=34.84 E-value=5.5e+02 Score=26.79 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 97 FLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 97 FLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
.|||-+.|.--.--.-|-.||. .+..|++|-++.+-.|.++..
T Consensus 42 ~Lqk~lKLneE~ltkTi~qy~~---QLn~L~aENt~L~SkLe~EKq 84 (305)
T PF14915_consen 42 DLQKSLKLNEETLTKTIFQYNG---QLNVLKAENTMLNSKLEKEKQ 84 (305)
T ss_pred HHHHHHhhhHHHHHHHHHHHhh---hHHHHHHHHHHHhHHHHHhHH
Confidence 3566666643222233344554 888899999988877766655
No 465
>PLN02678 seryl-tRNA synthetase
Probab=34.80 E-value=1.3e+02 Score=32.12 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhcChhHHHHhhhhchhHHHHHH
Q psy10214 96 FFLQKRFLLSALKPELIVKEVNMVTKDIVDLR 127 (415)
Q Consensus 96 fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR 127 (415)
..-++|-++ .+-|.+-.|-|.++++|..++
T Consensus 38 ld~~~r~l~--~~~e~lr~erN~~sk~I~~~k 67 (448)
T PLN02678 38 LDKEWRQRQ--FELDSLRKEFNKLNKEVAKLK 67 (448)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 334455554 455777778888888776543
No 466
>KOG0579|consensus
Probab=34.50 E-value=8.4e+02 Score=28.85 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=33.4
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE 134 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn 134 (415)
-||.+-|+-+.+|-+--+++-.-|-|+--.||..+--..+|- ++|..+.+..|-.|+
T Consensus 871 Rir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkq----r~eq~~~~~ql~ekd 927 (1187)
T KOG0579|consen 871 RIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQ----RKEQIEIEHQLKEKD 927 (1187)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHhhhhHH
Confidence 356666777777777777777777776666665555444443 334444444444433
No 467
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=34.40 E-value=4.7e+02 Score=25.89 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcc
Q psy10214 91 RQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 91 rq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkq 164 (415)
|-++.||-++.-.|..+. ..||+-.++-+.+.+.|.+-... ...|-.+++.|+..
T Consensus 19 kd~D~wFe~ek~~l~~~~---------------~~Lk~~~~~~e~l~~~rk~la~~----~~~~s~sl~~L~~~ 73 (218)
T cd07662 19 KDVDDFFEHERTFLLEYH---------------NRVKDSSAKSDRMTRSHKSAADD----YNRIGSSLYTLGTQ 73 (218)
T ss_pred cchhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccc
Confidence 445789998876652221 36777777777888888765533 34455566666443
No 468
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.28 E-value=1.7e+02 Score=25.43 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=16.0
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFL 98 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFL 98 (415)
+.|.-..-+|-...|++.+|+-+=.|-|
T Consensus 45 ~~e~~~~~~dp~~~klfrLaQl~ieYLl 72 (118)
T PF13815_consen 45 ENEDCQHFVDPNFLKLFRLAQLSIEYLL 72 (118)
T ss_pred ChhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3333344566666677777766665544
No 469
>KOG3091|consensus
Probab=34.25 E-value=5.3e+02 Score=28.60 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=30.7
Q ss_pred chhhHhHhHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 172 EKDEIKLEIDQATLKFLDLARQ-MEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 172 DqdEIKv~VEq~tnRFLD~ARQ-LE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
++.+.-+.|+++.+|-.+.++. |.+-..+..++- --..+..+=++||.+|+..-+-+..+
T Consensus 370 ~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~----~G~~L~~~EE~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 370 HHADAVAKIEEAKNRHVELSHRILRVMIKQEILRK----RGYALTPDEEELRAKLDTLLAQLNAP 430 (508)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcCCccHHHHHHHHHHHHHHhcCh
Confidence 4455667788888888887743 333222222211 11133444455666655544444444
No 470
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.21 E-value=3.9e+02 Score=27.32 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=43.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH
Q psy10214 75 IKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154 (415)
Q Consensus 75 ~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf 154 (415)
+++.|+---.+|-+++.-.|.|= +.+... ..-|...+..+..+.|+..+..|+.++++.+++...+|..|..=|..+
T Consensus 164 a~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e--~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 164 AKVKVDWLRSKLEEILEAKEIYD-QHETRE--EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred cCcchHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666555444431 222211 122222233333445777777788888888888888877776555555
Q ss_pred HH
Q psy10214 155 QS 156 (415)
Q Consensus 155 Qs 156 (415)
..
T Consensus 241 ~~ 242 (269)
T PF05278_consen 241 EM 242 (269)
T ss_pred HH
Confidence 43
No 471
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=34.04 E-value=5.4e+02 Score=26.46 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhhccCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 190 LARQMEAFFLQKRFLLSALKPEL-IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 190 ~ARQLE~FFLQKrlllSa~KPe~-vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.-+.++.+-+|..+.+.++-|+. -+.++..+|....+.-+.-|.-...+.+.-...+...+.
T Consensus 192 l~~~iR~~~~~~E~ameTlDPnAk~y~~~~~dl~~~~~ev~~~I~~l~~~~~~~~~~f~pte~ 254 (289)
T PF05149_consen 192 LDRQIRSTHLQQERAMETLDPNAKKYSKEKKDLLEQREEVEQEINLLRDKQAKALEDFEPTEQ 254 (289)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33778888888888888888877 445566777777766777777777777776666665544
No 472
>KOG0239|consensus
Probab=34.04 E-value=7.5e+02 Score=28.10 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=8.0
Q ss_pred CCCCcchhhHHhh
Q psy10214 392 GLLQGPLAYLEKT 404 (415)
Q Consensus 392 ~~~~~~la~le~~ 404 (415)
|+|+.-|..|-++
T Consensus 419 Giipral~~lF~~ 431 (670)
T KOG0239|consen 419 GIIPRALEKLFRT 431 (670)
T ss_pred CccHHHHHHHHHH
Confidence 4577666666543
No 473
>PF13339 AATF-Che1: Apoptosis antagonizing transcription factor
Probab=33.97 E-value=3.1e+02 Score=23.74 Aligned_cols=27 Identities=4% Similarity=0.297 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy10214 216 EDIVDLRHDLARKEELIKRHYDKI-AVW 242 (415)
Q Consensus 216 EEI~dLK~ELqRKErLIqKh~eKI-eeW 242 (415)
..+.++|.+++..+.-+..|...+ +.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~R~~~L~KW 128 (131)
T PF13339_consen 101 RSLEEYWEEIQKLDKRLEPYRNSTLDKW 128 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999988888888887764 335
No 474
>KOG2685|consensus
Probab=33.81 E-value=6.5e+02 Score=27.35 Aligned_cols=68 Identities=19% Similarity=0.073 Sum_probs=39.6
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 173 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLL 246 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL 246 (415)
.-..+.|.++.-++. +.|....+--+..+..+ +..+.+-.++||.+...-+-.+.+-.+..+.|+.-|
T Consensus 223 ~~s~e~W~~fs~~nl-~~ae~er~~S~~LR~~l-----~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL 290 (421)
T KOG2685|consen 223 SSSPESWAKFSGDNL-DRAERERAASAALREAL-----DQTLRETANDLRTQADAVELAFKKRIRETQDARNKL 290 (421)
T ss_pred CCCHHHHHHhcchhH-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678888766554 44433333333334433 335577788888888777777766555555544433
No 475
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=33.73 E-value=3.9e+02 Score=26.53 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=24.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHH
Q psy10214 177 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHD 224 (415)
Q Consensus 177 Kv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~E 224 (415)
..-+.+++.||....+.+|.---.. ....+.+--++.+.||.+
T Consensus 204 E~ALr~a~~KF~~Rf~~~E~~~~~~-----g~~~~~~slee~~~lW~~ 246 (248)
T TIGR00444 204 EIALQKANEKFERRFREVERIVAAR-----GLELTGVDLEEMEELWQQ 246 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-----CCChhhCCHHHHHHHHHH
Confidence 3346677788888888887654321 122333444566666654
No 476
>PRK13411 molecular chaperone DnaK; Provisional
Probab=33.64 E-value=1.9e+02 Score=31.81 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy10214 124 VDLRHDLARKEELIK 138 (415)
Q Consensus 124 ~eLR~ElaRKnaLLr 138 (415)
.+++..+.+-++||.
T Consensus 558 ~~i~~~l~~~~~wL~ 572 (653)
T PRK13411 558 QRAEQKVEQLEAALT 572 (653)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 477
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=33.41 E-value=4.2e+02 Score=25.00 Aligned_cols=145 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccch
Q psy10214 94 EAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEK 173 (415)
Q Consensus 94 E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~Dq 173 (415)
+.||..++-.+ .+=|.=+|..-+.-.-+...|+|++-==..+-+-..++... +...++-.+|+.++....-..-...
T Consensus 3 D~~F~~~k~~i--~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~-E~~~~l~~~l~~~a~~~~~~~~~~~ 79 (216)
T cd07627 3 DEWFIEKKQYL--DSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSL-ELSKSLSDLLAALAEVQKRIKESLE 79 (216)
T ss_pred cHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchHhHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHhHhHHH---HHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q psy10214 174 DEIKLEIDQ---ATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH-------YDKIAVWQ 243 (415)
Q Consensus 174 dEIKv~VEq---~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh-------~eKIeeWQ 243 (415)
.-....+-. .+..++.++.++-+-|-++.-.+. +...+..+|+++..-+.|. .+||..-+
T Consensus 80 ~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~----------~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~ 149 (216)
T cd07627 80 RQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQ----------YWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLL 149 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q ss_pred HHHHHHhc
Q psy10214 244 NLLSDLQG 251 (415)
Q Consensus 244 svL~dlq~ 251 (415)
.-++.++.
T Consensus 150 ~ei~~~e~ 157 (216)
T cd07627 150 SELEEAER 157 (216)
T ss_pred HHHHHHHH
No 478
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=33.24 E-value=2.7e+02 Score=29.85 Aligned_cols=33 Identities=9% Similarity=0.054 Sum_probs=16.5
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHhhh--HHHHHH
Q psy10214 116 VNMVTKDIVDLRHDLARKEELIKRHYD--KIAVWQ 148 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaRKnaLLrkhy~--KIavWq 148 (415)
|+.+..++.+|++|+..+++.|..-.. ...+|.
T Consensus 397 ~~LT~~e~~kL~~e~~~l~~ei~~l~~~t~~~~w~ 431 (439)
T PHA02592 397 YSMTSDEREKLQKEAEELEKEHEYWKKTTAKKEYI 431 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444566666666555555544333 244443
No 479
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.18 E-value=5.6e+02 Score=26.37 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 131 ARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 131 aRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
..++..|.+-|+.+..|+.+...+=.++..|
T Consensus 291 ~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL 321 (388)
T PF04912_consen 291 AEQESKIDELYEILPRWDPYAPSLPSLVERL 321 (388)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3455889999999999998887766665555
No 480
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=33.14 E-value=5.9e+02 Score=26.63 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10214 122 DIVDLRHDLARKEELIK 138 (415)
Q Consensus 122 di~eLR~ElaRKnaLLr 138 (415)
|..++|.|+.|---.||
T Consensus 192 d~~eWklEvERV~PqLK 208 (359)
T PF10498_consen 192 DPAEWKLEVERVLPQLK 208 (359)
T ss_pred CHHHHHHHHHHHhhhhe
Confidence 88999999999887774
No 481
>PRK01203 prefoldin subunit alpha; Provisional
Probab=33.01 E-value=1.9e+02 Score=26.40 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=23.6
Q ss_pred hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 110 ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 110 e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
+.++.|+|-...++..|+.++.-.+..+.|+..
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~ 35 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQ 35 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777888888888877776666644
No 482
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=32.96 E-value=3.3e+02 Score=29.91 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH
Q psy10214 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE 134 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn 134 (415)
-.+.||-+.++...+. + +.+.+ .+++..|++-+.+.+
T Consensus 270 ~~~~~~~~~~~~~~~~--~-~~~~l---~~~~~kl~~~i~~~~ 306 (564)
T COG1293 270 ALDEKFERDKIKQLAS--E-LEKKL---EKELKKLENKLEKQE 306 (564)
T ss_pred HHHHHhhhhhHHHhHH--H-HHHHH---HHHHHHHHHHHHHHH
Confidence 4567787777776555 2 33332 235555544444444
No 483
>KOG0241|consensus
Probab=32.93 E-value=2.1e+02 Score=34.49 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=44.8
Q ss_pred hhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHH
Q psy10214 46 QGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVD 125 (415)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~e 125 (415)
+..|--|-|+ +.-|.+.--+|-|+...--..+=-.++.||-|.||.+-.- +.+--.---.|+.| .|.|+.+
T Consensus 305 DSVLTwLLkD-~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~-----avvNedpnarvirE---lReEve~ 375 (1714)
T KOG0241|consen 305 DSVLTWLLKD-NLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNH-----AVVNEDPNARVIRE---LREEVEK 375 (1714)
T ss_pred hHHHHHHHHh-hcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhcc-----ccccCCchHHHHHH---HHHHHHH
Confidence 4556666666 5556666666666555222223346788999999876331 11211112234444 5667777
Q ss_pred HHHHHHHHH
Q psy10214 126 LRHDLARKE 134 (415)
Q Consensus 126 LR~ElaRKn 134 (415)
||..|..++
T Consensus 376 lr~qL~~ae 384 (1714)
T KOG0241|consen 376 LREQLEQAE 384 (1714)
T ss_pred HHHHHhhhh
Confidence 777766654
No 484
>KOG4074|consensus
Probab=32.87 E-value=6.2e+02 Score=26.84 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhh---------HHHHHHHhHHhHHHHhhhhh
Q psy10214 125 DLRHDLARKEELIKRHYD---------KIAVWQNLLSDLQSCLQVLT 162 (415)
Q Consensus 125 eLR~ElaRKnaLLrkhy~---------KIavWqnLlsdfQscLs~LS 162 (415)
++..|+-|-.++|++.|. |--++..+-+|||.-+..|+
T Consensus 137 ere~~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddLQ~~ve~Lt 183 (383)
T KOG4074|consen 137 EREAELERELDLLRKQLNIQTKVNSELKRLLVASVGDDLQGQVEALT 183 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334455555566666654 44455566677776666553
No 485
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.80 E-value=4.4e+02 Score=25.43 Aligned_cols=25 Identities=4% Similarity=0.123 Sum_probs=13.6
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFF 97 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fF 97 (415)
..++..+...+..+...+.....++
T Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~ 61 (276)
T PRK13922 37 SPVRQVVGDVVSPVQRVVNAPREFV 61 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665555554443
No 486
>KOG1696|consensus
Probab=32.66 E-value=4.2e+02 Score=25.85 Aligned_cols=136 Identities=19% Similarity=0.136 Sum_probs=73.0
Q ss_pred HHHHHHHHhhcChh-HHHHhhhhchhHHHHHHHHHHHHH--HHHHHhhh-HHHHHHHhHHhHHHHhhhhhccccc---c-
Q psy10214 97 FLQKRFLLSALKPE-LIVKEVNMVTKDIVDLRHDLARKE--ELIKRHYD-KIAVWQNLLSDLQSCLQVLTKEDEV---S- 168 (415)
Q Consensus 97 FLqkr~~ls~~kpe-~i~ke~n~~~~di~eLR~ElaRKn--aLLrkhy~-KIavWqnLlsdfQscLs~LSkqE~s---e- 168 (415)
=||||+.-|.++-- --|=.+++ |+.++-..-+|.+ .||+.+.- +-.+| +-+-+..+-..+.+..+- +
T Consensus 5 rlqKRLAssVl~cGKkKvWlDpN---E~~eI~~ansRq~irkLikdg~iI~Kp~~--vhsr~r~rk~~~akrkgrH~G~G 79 (193)
T KOG1696|consen 5 RLQKRLAASVLKCGKKKVWLDPN---EISEISGANSRQNIRKLIKDGLIIRKPVT--VHSRSRCRKRLEAKRKGRHMGYG 79 (193)
T ss_pred HHHHHHHHHHHHhcccceeeCcc---HHHHhcccchHHHHHHHHhCCeEeecchh--hhHHHHHHHHHHHHHhccccCcc
Confidence 47899988876421 00111233 6666666666665 45544433 11122 233344433333333211 0
Q ss_pred -----cccchhhHhHhHH--HHHHHHHHHHH---HHHHHH---HHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 169 -----TTLEKDEIKLEID--QATLKFLDLAR---QMEAFF---LQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 169 -----r~~DqdEIKv~VE--q~tnRFLD~AR---QLE~FF---LQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
.-..-.+-.+||. +.+.+||..-| .+|.+. |=+.++-+.+|.+.++.|.|..+++|-++.+.|....
T Consensus 80 KRkGTanArmP~k~~Wmrr~RvlRrlL~kyR~skKIdkh~YH~lY~k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQa 159 (193)
T KOG1696|consen 80 KRKGTANARMPSKVLWMRRMRVLRRLLKKYRDSKKIDKHMYHDLYLKVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQA 159 (193)
T ss_pred cccccccccCchhHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111223456665 44556665543 344422 2235577889999999999999999998888777554
Q ss_pred HH
Q psy10214 236 YD 237 (415)
Q Consensus 236 ~e 237 (415)
..
T Consensus 160 eA 161 (193)
T KOG1696|consen 160 EA 161 (193)
T ss_pred HH
Confidence 33
No 487
>PF04177 TAP42: TAP42-like family; InterPro: IPR007304 The TOR signalling pathway activates a cell-growth program in response to nutrients []. TIP41 interacts with TAP42 and negatively regulates the TOR signalling pathway [].; GO: 0009966 regulation of signal transduction; PDB: 3QC1_A 2V0P_A.
Probab=32.64 E-value=2.6e+02 Score=28.25 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=34.4
Q ss_pred ccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q psy10214 43 GLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQME 94 (415)
Q Consensus 43 ~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E 94 (415)
.||..|+...++.+..... .+.++....|..+|..|-+|++.++
T Consensus 4 ~lf~~~~~~~~~le~~~~~--------~~s~~~q~~v~~~i~~l~~~~~~v~ 47 (340)
T PF04177_consen 4 ELFDEALKLYDELENSSLP--------SSSPEYQEKVKSAIADLEKAQKMVS 47 (340)
T ss_dssp HHHHHHHHHHHHCCC-SS---------TTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999988652222 3678888899999999999999885
No 488
>KOG2160|consensus
Probab=32.59 E-value=5e+02 Score=27.37 Aligned_cols=53 Identities=23% Similarity=0.123 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh------HHHHHHHhHHhHHH
Q psy10214 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD------KIAVWQNLLSDLQS 156 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~------KIavWqnLlsdfQs 156 (415)
.||.+||.+-+..-+ . ++.+....+-+-.--.|||++.. ||.=|+-|-..+++
T Consensus 162 v~E~~~L~~Ll~~ls--~----------~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~ 220 (342)
T KOG2160|consen 162 VIELGALSKLLKILS--S----------DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS 220 (342)
T ss_pred HHHcccHHHHHHHHc--c----------CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc
Confidence 477788877555421 1 12333445555555566666544 66666655555554
No 489
>KOG1168|consensus
Probab=32.48 E-value=13 Score=38.57 Aligned_cols=120 Identities=27% Similarity=0.360 Sum_probs=58.5
Q ss_pred HHHHHH---HHHHHHHHhhcChhHHHHhhhhchhHHHHHHH---------HHHHHHHHHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 91 RQMEAF---FLQKRFLLSALKPELIVKEVNMVTKDIVDLRH---------DLARKEELIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 91 rq~E~f---FLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~---------ElaRKnaLLrkhy~KIavWqnLlsdfQscL 158 (415)
|++|+| |-|+|+.|-..+-+ | -+-++.||. -|-|-|-|---|+..|+ |.--||+||
T Consensus 217 ReLEaFAErFKQRRIKLGVTQAD-V-------G~ALAnLKiPGVGsLSQSTICRFESLTLSHNNMiA----LKPILqaWL 284 (385)
T KOG1168|consen 217 RELEAFAERFKQRRIKLGVTQAD-V-------GKALANLKIPGVGSLSQSTICRFESLTLSHNNMIA----LKPILQAWL 284 (385)
T ss_pred HHHHHHHHHHHhhhhhhcccHHH-H-------HHHHHhCcCCCcccccccceeeeeeeccccCcchh----hhHHHHHHH
Confidence 666776 89999999766542 1 123444432 23445544444555442 222244444
Q ss_pred hhh--hcccccccccchhhHhHhHHHHHHHHHHHH---HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHH
Q psy10214 159 QVL--TKEDEVSTTLEKDEIKLEIDQATLKFLDLA---RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELI 232 (415)
Q Consensus 159 s~L--SkqE~ser~~DqdEIKv~VEq~tnRFLD~A---RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLI 232 (415)
.+- ...+.. +--|..|+=-.-|+..-|---+| |.||.||-..- +.| -|-|..+-..|+-|++++
T Consensus 285 EeAE~a~keK~-~~pd~~~l~~~~ekKRKRTSIAAPEKRsLEayFavQP-RPS--------~EkIAaIAekLDLKKNVV 353 (385)
T KOG1168|consen 285 EEAEAAMKEKD-TKPDINELLPGGEKKRKRTSIAAPEKRSLEAYFAVQP-RPS--------GEKIAAIAEKLDLKKNVV 353 (385)
T ss_pred HHHHHHHHhhc-cCCchhhccCccccccccccccCcccccHHHHhccCC-CCc--------hhHHHHHHHhhhhhhceE
Confidence 432 111111 11233344333444443332233 89999997321 111 234666666677666655
No 490
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.45 E-value=44 Score=28.29 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 120 TKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscL 158 (415)
..++..|.+|+...+.-+.+-..++..+.+..+.++..|
T Consensus 31 ~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 31 AEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 334444555555444444444455556655566666544
No 491
>KOG1318|consensus
Probab=32.41 E-value=2.7e+02 Score=29.99 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHH---HHHHHhhhHHHHH
Q psy10214 121 KDIVDLRHDLARKE---ELIKRHYDKIAVW 147 (415)
Q Consensus 121 ~di~eLR~ElaRKn---aLLrkhy~KIavW 147 (415)
.|...+.++-.||+ +.=||--++|+.|
T Consensus 222 ~~~~~~~rdr~Krd~HNeVERRRR~nIN~~ 251 (411)
T KOG1318|consen 222 TDATALERDRRKRDNHNEVERRRRENINDR 251 (411)
T ss_pred cccchhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35555566666665 4445555688888
No 492
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=32.39 E-value=2.1e+02 Score=31.21 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHH
Q psy10214 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaR 132 (415)
-+|+|||--|+.- +-.--++.+++....++.++++++.+
T Consensus 174 iTe~FFLT~~a~h--lg~~~~~~~~~~~~r~l~~lq~~~~~ 212 (629)
T PF10408_consen 174 ITECFFLTLRALH--LGLLPAIQRYKRLLRELRRLQRELEE 212 (629)
T ss_dssp HHHHHHHHHHHHH--HTHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998887 55556888888888899999998876
No 493
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=32.36 E-value=2.5e+02 Score=22.19 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHHhH
Q psy10214 126 LRHDLARKEELIKRHYDKIAVWQNLLSDL 154 (415)
Q Consensus 126 LR~ElaRKnaLLrkhy~KIavWqnLlsdf 154 (415)
.+.++++....+.....++..-.+..+++
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~ 31 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEY 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444333333
No 494
>KOG2063|consensus
Probab=32.27 E-value=2.5e+02 Score=32.84 Aligned_cols=188 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred CccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchh
Q psy10214 42 GGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTK 121 (415)
Q Consensus 42 ~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~ 121 (415)
+|.-.+.|.-|++. +|+.+ ....-+.-..|+.+.=.-.++.--+.-++++---+-...||..++= |++
T Consensus 517 kg~h~~AL~ll~~l------~d~~~---~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I---ft~ 584 (877)
T KOG2063|consen 517 KGMHEKALQLLRDL------VDEDS---DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI---FTS 584 (877)
T ss_pred ccchHHHHHHHHHH------hcccc---ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee---eec
Q ss_pred HHHHHHHHHHHHH---HHHHHhhh--------HHHHHHHhHHhHHHHhhhh---hcc-cccccccchhhHhHhHHHHHHH
Q psy10214 122 DIVDLRHDLARKE---ELIKRHYD--------KIAVWQNLLSDLQSCLQVL---TKE-DEVSTTLEKDEIKLEIDQATLK 186 (415)
Q Consensus 122 di~eLR~ElaRKn---aLLrkhy~--------KIavWqnLlsdfQscLs~L---Skq-E~ser~~DqdEIKv~VEq~tnR 186 (415)
|...-...+.|.+ .+..+++. -|..|+.--.-|-.|+..| ..+ ..+-..--.+..++.|+....+
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 187 FLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 187 FLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~ 247 (415)
|++.+.+-+.-++..++ +-..+-+|.+.+.-++.+.|+.|..+.+.|..|.+++.
T Consensus 665 ~l~~s~~Y~p~~~L~~~------~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~ 719 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERL------NGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAES 719 (877)
T ss_pred HhhhhcccCcchhhhhc------cchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHH
No 495
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=32.25 E-value=4.1e+02 Score=25.81 Aligned_cols=86 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH--HHHHHhhhHHHHHHH
Q psy10214 72 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE--ELIKRHYDKIAVWQN 149 (415)
Q Consensus 72 k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn--aLLrkhy~KIavWqn 149 (415)
+.+++..+++.+..|-.++.+++.|+-.+ +...++++.+|=..++||= ..|.-+-+.|
T Consensus 88 ~~~~~qqi~ql~~~Le~L~e~le~~l~~~---------------~~~~~~~ll~La~~iA~~vi~~el~~~p~~i----- 147 (236)
T PRK13386 88 RQSIRQQFNDAAKPLGALRQQLERYLAEY---------------EQQQRDELLDLVEKVTRQVIRCELTLQPQQI----- 147 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-----
Q ss_pred hHHhHHHHhhhhhc-ccccccccchhhHhH
Q psy10214 150 LLSDLQSCLQVLTK-EDEVSTTLEKDEIKL 178 (415)
Q Consensus 150 LlsdfQscLs~LSk-qE~ser~~DqdEIKv 178 (415)
++.++..|..|.. .+.+.=.+|++|+..
T Consensus 148 -l~~v~eaL~~lp~~~~~v~I~vnP~D~~~ 176 (236)
T PRK13386 148 -LALVEETLAALPDDPEQLKVHLNPEEFGR 176 (236)
T ss_pred -HHHHHHHHHhccccCCCeEEEECHHHHHH
No 496
>PRK14150 heat shock protein GrpE; Provisional
Probab=32.25 E-value=4.5e+02 Score=25.07 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHH
Q psy10214 114 KEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQ 193 (415)
Q Consensus 114 ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQ 193 (415)
.+.+....++.+|+.++..+++.++..|.|+ .++|++.=....++- .+-.+..++..+..||.....
T Consensus 34 ~~~~~~~~~i~~l~~~l~~~~~~~kd~~lR~------~AefeN~rkR~~kE~-------~~~~~~a~~~~~~~lL~v~Dn 100 (193)
T PRK14150 34 DELDEADARIAELEAQLAEAQAEERDSVLRA------RAEVENIRRRAEQDV-------EKAHKFALEKFANELLPVIDN 100 (193)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHhH
Q ss_pred HHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 194 MEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 194 LE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
+| |.+-+.......++.-+.-++.=+.....++.+|
T Consensus 101 le------rAl~~~~~~~~~~~~~~~Gv~mi~~~l~~~L~~~ 136 (193)
T PRK14150 101 LE------RALQAADKENEALKALIEGVELTLKSLLDTVAKF 136 (193)
T ss_pred HH------HHHhcccccchhHHHHHHHHHHHHHHHHHHHHHC
No 497
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=32.24 E-value=1.6e+02 Score=31.89 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCc
Q psy10214 136 LIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLA-----RQMEAFFLQKRFLLSALKP 210 (415)
Q Consensus 136 LLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~A-----RQLE~FFLQKrlllSa~KP 210 (415)
++.+|.++|+++++.-+.|++ +...++.+-+..++.+.|-++-... |+.-+-.--|.++++.++-
T Consensus 3 ~~~~~~e~i~~fd~iyek~~~----------s~~~s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~~l~~nrrl 72 (548)
T COG5665 3 LLKKVKEGIEDFDDIYEKFQS----------TDNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRL 72 (548)
T ss_pred hHHHHHhhhhhHHHHHHHHhc----------cCchhHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHhHHH
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy10214 211 ELIVKEDIVDLRHDLARK 228 (415)
Q Consensus 211 e~vvKEEI~dLK~ELqRK 228 (415)
-..-.++....+++...|
T Consensus 73 ie~~me~fk~ve~~mk~k 90 (548)
T COG5665 73 IENGMERFKSVEKLMKTK 90 (548)
T ss_pred HHhHHHHHHHHHHHHHHH
No 498
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=32.19 E-value=7.8e+02 Score=27.79 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHH---HHHHHHHhhhH
Q psy10214 67 LSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR---KEELIKRHYDK 143 (415)
Q Consensus 67 ~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaR---KnaLLrkhy~K 143 (415)
|...|-.+--.-+-..+.+=+++.+.-..---+-+-.++..+-|++++| .+...++||-. +++.+.+...|
T Consensus 182 LE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lre------qlk~i~~eLg~~~~~~~~~~~~~~k 255 (775)
T TIGR00763 182 LETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLRE------QLKAIKKELGIEKDDKDELEKLKEK 255 (775)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhCCCCCchhHHHHHHHH
Q ss_pred HHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCchhhhHHHH
Q psy10214 144 IAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLA-----RQMEAFFLQKRFLLSALKPELIVKEDI 218 (415)
Q Consensus 144 IavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~A-----RQLE~FFLQKrlllSa~KPe~vvKEEI 218 (415)
|..- +. +++++.++++.+.||-... -.+-.-+|.....+.-.+.... +.++
T Consensus 256 ~~~~------------------~~-----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~ 311 (775)
T TIGR00763 256 LEEL------------------KL-----PEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKE-NLDL 311 (775)
T ss_pred HHhc------------------CC-----CHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccc-hhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 219 VDLRHDLARKEELIKRHYDKIAVWQNL 245 (415)
Q Consensus 219 ~dLK~ELqRKErLIqKh~eKIeeWQsv 245 (415)
..++..|+..=-=+.+.+++|.+|.++
T Consensus 312 ~~~~~~l~~~~~G~~~~k~~i~~~~~~ 338 (775)
T TIGR00763 312 KRAKEILDEDHYGLKKVKERILEYLAV 338 (775)
T ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHH
No 499
>PRK05560 DNA gyrase subunit A; Validated
Probab=32.12 E-value=79 Score=35.92 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcChhHHH---------HhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 97 FLQKRFLLSALKPELIV---------KEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 97 FLqkr~~ls~~kpe~i~---------ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscL 158 (415)
.|.++|.++..+-|.|+ .|.+++.+|+.+|++|+++.+.+|......+.+|.+=+.+++..+
T Consensus 404 ~L~~~f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkf 474 (805)
T PRK05560 404 GLMERFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKF 474 (805)
T ss_pred HHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
No 500
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=31.99 E-value=2.6e+02 Score=27.94 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCCCCccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHh
Q psy10214 36 PGGMGPGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKE 115 (415)
Q Consensus 36 ~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke 115 (415)
|++-+....+.....++.....+... ...+..+-...+..+++|=.++++++.--..-.-.+ +..|++
T Consensus 100 ~~~~gl~~~l~~ff~a~~~ls~~P~~-------~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i-----~~~V~~ 167 (322)
T TIGR02492 100 LDESGLSTYLNNFFNALQELAKNPDS-------EALRQAVLESAQALANSFNQTSNELQDLRKGINAEI-----KSAVTE 167 (322)
T ss_pred CCcCcHHHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q ss_pred hhhchhHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 116 VNMVTKDIVDLRHDLARKEE-LIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaRKna-LLrkhy~KIavWqnLlsdfQscL 158 (415)
.|...++|.+|.++|...+. -=..-++-+..-+.+++.|-..+
T Consensus 168 iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~~LS~~v 211 (322)
T TIGR02492 168 INSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLKELSQLI 211 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHHHHHhHc
Done!