Query psy10214
Match_columns 415
No_of_seqs 93 out of 109
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 20:46:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ykh_A RNA polymerase II media 96.6 0.015 5E-07 49.7 9.9 56 192-247 52-107 (108)
2 3vp9_A General transcriptional 95.3 0.0033 1.1E-07 52.5 0.4 79 148-232 13-91 (92)
3 3iot_A Maltose-binding protein 94.9 0.0023 7.7E-08 61.5 -2.1 8 85-92 131-138 (449)
4 3oja_A Leucine-rich immune mol 94.1 3.4 0.00012 40.5 18.2 39 211-249 437-475 (487)
5 3oja_B Anopheles plasmodium-re 93.6 1.2 3.9E-05 44.5 14.1 38 214-251 542-579 (597)
6 1deq_A Fibrinogen (alpha chain 90.7 6 0.0002 40.2 15.0 39 213-251 138-190 (390)
7 1s35_A Beta-I spectrin, spectr 90.0 8.6 0.00029 33.0 18.7 115 84-206 3-131 (214)
8 3na7_A HP0958; flagellar bioge 87.9 17 0.00057 33.6 16.8 23 122-144 54-76 (256)
9 1quu_A Human skeletal muscle a 87.7 15 0.00051 32.8 16.0 121 78-207 11-154 (250)
10 3vkg_A Dynein heavy chain, cyt 87.3 41 0.0014 42.2 21.5 42 210-251 2057-2098(3245)
11 3fb2_A Spectrin alpha chain, b 86.8 15 0.00051 32.0 16.0 44 82-125 14-64 (218)
12 2zqm_A Prefoldin beta subunit 86.3 8.2 0.00028 31.0 10.6 37 215-251 76-112 (117)
13 1hci_A Alpha-actinin 2; triple 85.6 26 0.0009 33.6 18.9 120 79-207 129-271 (476)
14 3vkg_A Dynein heavy chain, cyt 85.4 50 0.0017 41.5 20.9 54 86-139 1897-1952(3245)
15 3lbx_B Beta-I spectrin, spectr 84.2 19 0.00065 30.8 18.1 149 83-241 6-168 (185)
16 1xaw_A Occludin; coiled-coil, 83.7 3.2 0.00011 36.9 7.5 69 74-148 63-136 (140)
17 1fxk_A Prefoldin; archaeal pro 82.5 13 0.00045 29.5 10.1 33 110-142 4-36 (107)
18 2q12_A DIP13 alpha, DCC-intera 82.3 29 0.001 31.5 18.3 21 80-100 83-103 (265)
19 1sjj_A Actinin; 3-helix bundle 82.1 19 0.00065 37.7 13.8 29 79-107 368-396 (863)
20 1ykh_B RNA polymerase II holoe 82.0 12 0.00042 32.2 10.4 103 44-162 18-130 (132)
21 1gmj_A ATPase inhibitor; coile 81.8 9.7 0.00033 31.3 9.1 55 185-250 20-78 (84)
22 3r6n_A Desmoplakin; spectrin r 81.6 48 0.0016 33.6 18.0 31 224-254 233-266 (450)
23 1u5p_A Spectrin alpha chain, b 81.2 25 0.00086 30.1 17.4 23 84-106 6-28 (216)
24 2odv_A Plectin 1, HD1; plakin 79.8 39 0.0013 31.4 19.7 165 79-254 9-225 (235)
25 3oja_B Anopheles plasmodium-re 79.1 7.3 0.00025 38.8 9.1 35 215-249 536-570 (597)
26 1yke_B RNA polymerase II holoe 78.5 15 0.00051 32.5 9.9 104 44-163 18-131 (151)
27 3ilw_A DNA gyrase subunit A; D 78.4 17 0.00057 37.7 11.7 128 107-251 326-458 (470)
28 1ykh_B RNA polymerase II holoe 78.3 32 0.0011 29.6 13.7 75 172-249 51-125 (132)
29 3ghg_A Fibrinogen alpha chain; 77.8 16 0.00055 38.7 11.4 25 213-237 135-159 (562)
30 3ghg_A Fibrinogen alpha chain; 77.6 3.3 0.00011 43.7 6.3 43 117-159 105-148 (562)
31 1yke_B RNA polymerase II holoe 77.5 29 0.001 30.6 11.5 75 172-249 51-125 (151)
32 1deq_A Fibrinogen (alpha chain 76.9 69 0.0023 32.7 20.8 61 148-213 151-213 (390)
33 4h8s_A DCC-interacting protein 76.0 58 0.002 31.4 15.1 17 183-199 108-124 (407)
34 1cun_A Protein (alpha spectrin 75.1 37 0.0013 28.7 19.9 45 83-127 2-53 (213)
35 4fla_A Regulation of nuclear P 73.8 32 0.0011 30.4 10.8 76 74-161 72-147 (152)
36 3kbt_A Beta-I spectrin, spectr 73.8 52 0.0018 29.8 19.7 52 83-134 6-64 (326)
37 3lay_A Zinc resistance-associa 73.0 18 0.00062 32.7 9.2 64 71-137 72-136 (175)
38 2inr_A DNA topoisomerase 4 sub 72.9 14 0.00047 38.7 9.4 128 108-251 365-496 (514)
39 1gmj_A ATPase inhibitor; coile 72.8 15 0.00051 30.2 7.8 61 82-148 18-78 (84)
40 1sjj_A Actinin; 3-helix bundle 72.6 98 0.0033 32.4 16.0 67 182-250 606-672 (863)
41 2dfs_A Myosin-5A; myosin-V, in 72.1 63 0.0022 36.2 15.0 21 215-235 1029-1049(1080)
42 2p22_C Protein SRN2; endosome, 71.9 60 0.002 29.7 13.2 61 172-243 125-185 (192)
43 2q13_A DCC-interacting protein 71.6 72 0.0025 30.5 18.9 19 81-99 84-102 (385)
44 1zxa_A CGMP-dependent protein 70.7 4.8 0.00016 31.8 4.2 33 215-247 24-56 (67)
45 3a7p_A Autophagy protein 16; c 70.6 18 0.0006 32.6 8.4 58 104-161 51-108 (152)
46 1sum_B Phosphate transport sys 69.5 60 0.002 28.7 16.0 76 76-159 6-82 (235)
47 4gfh_A DNA topoisomerase 2; to 68.6 13 0.00044 42.3 8.6 43 108-150 989-1033(1177)
48 3htk_A Structural maintenance 68.3 18 0.00061 26.4 6.7 51 78-130 6-56 (60)
49 3nmd_A CGMP dependent protein 67.8 9.2 0.00032 30.7 5.4 32 215-246 39-70 (72)
50 1u4q_A Spectrin alpha chain, b 66.5 74 0.0025 28.6 16.6 47 84-130 6-59 (322)
51 3tnu_A Keratin, type I cytoske 66.4 59 0.002 27.4 10.7 51 92-143 10-60 (131)
52 2xcs_B DNA gyrase subunit B, D 66.2 50 0.0017 35.8 12.2 127 108-250 548-678 (692)
53 1u00_A HSC66, chaperone protei 66.1 22 0.00076 32.3 8.3 62 187-249 141-207 (227)
54 3edv_A Spectrin beta chain, br 64.7 82 0.0028 28.5 16.6 23 185-207 222-244 (323)
55 1u4q_A Spectrin alpha chain, b 64.2 82 0.0028 28.3 20.3 22 69-90 74-95 (322)
56 2v71_A Nuclear distribution pr 63.1 94 0.0032 28.6 16.1 22 78-99 28-49 (189)
57 1m1j_A Fibrinogen alpha subuni 62.6 1E+02 0.0035 32.2 13.2 25 213-237 136-160 (491)
58 1qb3_A Cyclin-dependent kinase 62.1 1.8 6E-05 39.0 0.2 13 241-254 73-87 (150)
59 4dyl_A Tyrosine-protein kinase 61.9 1.1E+02 0.0037 30.0 12.8 25 215-239 315-339 (406)
60 3l4q_C Phosphatidylinositol 3- 61.3 96 0.0033 28.2 14.2 55 77-147 10-64 (170)
61 4hpq_C ATG17, KLTH0D15642P; au 60.9 1.5E+02 0.005 30.1 15.7 29 78-106 246-274 (413)
62 2nov_A DNA topoisomerase 4 sub 60.9 15 0.00052 38.2 6.9 128 108-251 341-472 (496)
63 1l8d_A DNA double-strand break 60.7 63 0.0022 25.8 12.7 25 147-171 29-53 (112)
64 2v71_A Nuclear distribution pr 60.6 1E+02 0.0036 28.3 11.8 11 122-132 11-21 (189)
65 3na7_A HP0958; flagellar bioge 60.3 1.1E+02 0.0036 28.3 17.2 9 235-243 180-188 (256)
66 4e81_A Chaperone protein DNAK; 59.0 17 0.00059 33.2 6.2 49 186-235 143-191 (219)
67 1m1j_C Fibrinogen gamma chain; 59.0 1.6E+02 0.0054 29.9 14.6 35 221-255 103-137 (409)
68 2j69_A Bacterial dynamin-like 57.8 1.3E+02 0.0046 31.5 13.5 12 189-200 439-450 (695)
69 1g8x_A Myosin II heavy chain f 57.6 2.4E+02 0.0081 31.5 17.1 26 180-205 884-909 (1010)
70 3he5_B Synzip2; heterodimeric 57.5 16 0.00053 27.3 4.5 21 118-138 28-48 (52)
71 3edv_A Spectrin beta chain, br 57.3 1.1E+02 0.0038 27.6 19.0 52 83-134 8-67 (323)
72 3trt_A Vimentin; cytoskeleton, 56.0 64 0.0022 24.6 8.1 59 73-137 12-72 (77)
73 2i0m_A Phosphate transport sys 55.7 1E+02 0.0034 26.6 14.8 78 76-161 6-84 (216)
74 1t72_A Phosphate transport sys 54.8 1.1E+02 0.0036 26.6 17.7 28 77-104 11-38 (227)
75 3uun_A Dystrophin; triple heli 54.6 70 0.0024 24.5 12.4 46 83-137 4-49 (119)
76 2yy0_A C-MYC-binding protein; 54.5 9.6 0.00033 28.5 3.1 43 198-240 6-50 (53)
77 3edu_A Beta-I spectrin, spectr 53.8 1.1E+02 0.0037 26.5 14.7 42 84-125 4-52 (218)
78 3d2f_A Heat shock protein homo 53.8 44 0.0015 35.1 9.1 11 186-196 582-592 (675)
79 3m48_A General control protein 53.4 8.4 0.00029 26.9 2.4 26 106-138 6-31 (33)
80 1wlq_A Geminin; coiled-coil; 2 53.4 49 0.0017 27.2 7.3 46 99-149 28-73 (83)
81 2xkj_E Topoisomerase IV; type 52.6 76 0.0026 34.8 10.8 125 107-251 609-738 (767)
82 1hci_A Alpha-actinin 2; triple 52.1 1.7E+02 0.0057 28.1 19.5 23 185-207 370-392 (476)
83 2q12_A DIP13 alpha, DCC-intera 51.2 1.4E+02 0.0048 27.0 15.6 42 181-222 83-127 (265)
84 2e7s_A RAB guanine nucleotide 50.8 51 0.0017 29.1 7.6 36 212-247 99-134 (135)
85 2dfs_A Myosin-5A; myosin-V, in 50.5 2.5E+02 0.0086 31.5 14.8 18 213-230 1034-1051(1080)
86 3nmd_A CGMP dependent protein 50.0 49 0.0017 26.5 6.7 17 123-139 42-58 (72)
87 2dq0_A Seryl-tRNA synthetase; 49.8 46 0.0016 33.7 8.1 37 90-128 30-66 (455)
88 3oja_A Leucine-rich immune mol 49.0 1.3E+02 0.0044 29.4 11.0 29 114-142 435-463 (487)
89 3c3f_A Alpha/beta peptide with 48.9 14 0.00049 25.9 3.0 31 101-138 2-32 (34)
90 2wvr_A Geminin; DNA replicatio 48.8 56 0.0019 30.8 7.9 51 99-154 105-155 (209)
91 3ol1_A Vimentin; structural ge 48.8 64 0.0022 27.1 7.6 71 116-202 15-86 (119)
92 2q13_A DCC-interacting protein 48.8 1.8E+02 0.0063 27.6 13.9 24 119-142 19-42 (385)
93 3ol1_A Vimentin; structural ge 48.4 1.2E+02 0.0041 25.4 14.6 11 215-225 107-117 (119)
94 3tnu_B Keratin, type II cytosk 47.8 1.2E+02 0.0042 25.3 11.9 51 92-143 8-58 (129)
95 1uo4_A General control protein 47.7 11 0.00038 26.5 2.3 31 101-138 2-32 (34)
96 1xi4_A Clathrin heavy chain; a 47.3 1E+02 0.0035 36.6 11.3 165 68-251 924-1101(1630)
97 2pih_A Protein YMCA; regulate 46.9 1.3E+02 0.0045 25.9 9.6 36 215-251 72-107 (151)
98 4b9q_A Chaperone protein DNAK; 45.8 32 0.0011 35.4 6.4 78 171-251 507-593 (605)
99 3t98_B Nucleoporin NUP58/NUP45 45.7 1.2E+02 0.0043 24.8 9.4 55 136-194 13-67 (93)
100 1zxa_A CGMP-dependent protein 45.3 19 0.00064 28.5 3.5 26 121-146 25-50 (67)
101 2oxj_A Hybrid alpha/beta pepti 45.2 18 0.00061 25.5 3.0 31 101-138 2-32 (34)
102 4fla_A Regulation of nuclear P 44.9 1.6E+02 0.0056 25.9 14.1 71 175-251 72-142 (152)
103 2v4h_A NF-kappa-B essential mo 44.8 45 0.0015 28.7 6.1 35 122-156 46-80 (110)
104 3gp4_A Transcriptional regulat 43.1 90 0.0031 26.5 7.8 39 213-251 85-123 (142)
105 1t3j_A Mitofusin 1; coiled coi 42.8 53 0.0018 27.5 6.1 39 213-251 51-89 (96)
106 1cxz_B Protein (PKN); protein- 42.1 1.1E+02 0.0039 25.0 7.9 60 73-135 24-84 (86)
107 3c3g_A Alpha/beta peptide with 42.1 21 0.00073 24.9 3.0 26 106-138 6-31 (33)
108 3lof_A Heat shock 70 kDa prote 41.8 1.3E+02 0.0046 24.0 9.1 49 186-234 6-55 (113)
109 2wuj_A Septum site-determining 41.7 14 0.00048 27.6 2.2 24 113-136 33-56 (57)
110 2kho_A Heat shock protein 70; 41.6 29 0.001 35.6 5.4 62 187-251 532-593 (605)
111 2l5g_B Putative uncharacterize 41.6 34 0.0012 25.0 4.1 35 220-254 6-40 (42)
112 3haj_A Human pacsin2 F-BAR; pa 41.5 1.1E+02 0.0039 30.4 9.5 40 188-230 277-317 (486)
113 3s4r_A Vimentin; alpha-helix, 41.3 1.4E+02 0.0048 24.1 10.5 77 169-249 4-89 (93)
114 2v0o_A FCHO2, FCH domain only 40.7 1.9E+02 0.0067 25.6 11.6 18 78-95 137-154 (276)
115 1dip_A Delta-sleep-inducing pe 40.4 84 0.0029 25.5 6.7 48 213-264 12-62 (78)
116 3ghg_B Fibrinogen beta chain; 40.3 3.4E+02 0.012 28.2 13.5 102 122-257 96-197 (461)
117 4gyx_A Type III collagen fragm 39.8 27 0.00091 23.7 3.1 21 19-39 6-26 (31)
118 1s0p_A CAP, adenylyl cyclase-a 39.2 47 0.0016 30.1 5.7 32 79-110 9-55 (176)
119 2d5u_A N-glycanase 1; pngase, 39.2 48 0.0017 28.4 5.5 28 24-55 1-28 (124)
120 2b5u_A Colicin E3; high resolu 39.0 3.8E+02 0.013 28.5 15.4 33 107-145 313-345 (551)
121 2zxx_A Geminin; coiled-coil, c 38.7 1E+02 0.0035 25.0 7.0 29 99-132 24-52 (79)
122 3iox_A AGI/II, PA; alpha helix 38.6 2.9E+02 0.0099 29.0 12.1 37 215-251 72-108 (497)
123 3gpv_A Transcriptional regulat 38.5 69 0.0023 27.3 6.4 37 213-249 99-135 (148)
124 3s4r_A Vimentin; alpha-helix, 38.3 1.6E+02 0.0054 23.9 9.8 25 70-95 6-30 (93)
125 3ilw_A DNA gyrase subunit A; D 38.0 42 0.0014 34.8 5.8 56 98-153 391-455 (470)
126 1ud0_A HSC70, 70 kDa heat-shoc 37.7 87 0.003 24.9 6.6 42 191-233 6-49 (113)
127 3kbt_A Beta-I spectrin, spectr 36.2 2.4E+02 0.0082 25.4 18.2 42 84-125 113-161 (326)
128 3ibp_A Chromosome partition pr 36.0 3.3E+02 0.011 26.9 12.6 39 122-164 18-56 (302)
129 2bni_A General control protein 35.9 20 0.00067 25.2 2.1 31 101-138 2-32 (34)
130 3nr7_A DNA-binding protein H-N 35.8 1.3E+02 0.0044 24.4 7.3 45 108-152 25-69 (86)
131 3qwe_A GMIP, GEM-interacting p 35.7 3.1E+02 0.01 26.4 14.5 28 117-144 97-124 (279)
132 1uii_A Geminin; human, DNA rep 35.3 1.1E+02 0.0038 25.1 6.8 36 99-139 36-71 (83)
133 3lpx_A GYRA, DNA gyrase, A sub 35.2 2.2E+02 0.0074 29.9 10.5 48 107-159 315-362 (500)
134 4e81_A Chaperone protein DNAK; 35.2 2E+02 0.0069 26.1 9.3 12 69-80 118-129 (219)
135 2ocy_A RAB guanine nucleotide 34.7 2.5E+02 0.0085 25.1 14.4 37 213-249 112-148 (154)
136 2eqb_B RAB guanine nucleotide 34.6 2E+02 0.007 24.0 11.8 15 215-229 82-96 (97)
137 2inr_A DNA topoisomerase 4 sub 34.5 28 0.00096 36.4 3.9 22 117-138 450-471 (514)
138 3uul_A Utrophin; spectrin repe 34.5 1.5E+02 0.0053 22.6 12.7 45 83-136 4-48 (118)
139 3vmx_A Voltage-gated hydrogen 34.4 51 0.0017 24.7 4.2 20 122-141 26-45 (48)
140 1t3j_A Mitofusin 1; coiled coi 33.9 1.4E+02 0.0048 25.0 7.3 22 121-142 54-75 (96)
141 3kin_B Kinesin heavy chain; mo 33.8 5.4 0.00018 33.7 -1.3 76 60-139 39-114 (117)
142 1q2z_A ATP-dependent DNA helic 33.7 47 0.0016 27.8 4.5 77 73-165 21-101 (120)
143 3efg_A Protein SLYX homolog; x 32.9 1.1E+02 0.0037 24.3 6.2 35 215-249 13-47 (78)
144 2r2v_A GCN4 leucine zipper; co 32.8 37 0.0013 23.9 3.0 29 102-137 3-31 (34)
145 2odv_A Plectin 1, HD1; plakin 32.2 3.1E+02 0.01 25.4 18.9 74 85-158 64-151 (235)
146 4dzn_A Coiled-coil peptide CC- 32.0 32 0.0011 23.6 2.6 11 215-225 15-25 (33)
147 3pe0_A Plectin; cytoskeleton, 31.9 3.2E+02 0.011 25.5 15.3 22 82-103 9-30 (283)
148 3lay_A Zinc resistance-associa 31.8 86 0.0029 28.3 6.2 30 102-131 66-95 (175)
149 3gp4_A Transcriptional regulat 31.3 2E+02 0.0068 24.3 8.1 40 122-161 89-128 (142)
150 2j69_A Bacterial dynamin-like 31.2 4.8E+02 0.016 27.3 22.3 7 153-159 403-409 (695)
151 3a7o_A Autophagy protein 16; c 31.0 1.3E+02 0.0046 24.2 6.4 24 122-145 19-42 (75)
152 2p22_A Suppressor protein STP2 30.8 3E+02 0.01 24.9 13.7 30 68-97 6-37 (174)
153 4a17_U RPL35, 60S ribosomal pr 30.5 2E+02 0.0069 24.9 8.0 43 99-142 31-75 (124)
154 4gkw_A Spindle assembly abnorm 30.3 3E+02 0.01 24.7 14.3 43 122-164 12-54 (167)
155 1kd8_B GABH BLL, GCN4 acid bas 30.2 49 0.0017 23.5 3.3 30 103-139 4-33 (36)
156 3iz5_c 60S ribosomal protein L 30.2 2E+02 0.007 24.8 8.0 43 99-142 32-75 (124)
157 1use_A VAsp, vasodilator-stimu 30.2 33 0.0011 25.4 2.5 12 119-130 20-31 (45)
158 1m1j_B Fibrinogen beta chain; 30.1 4.8E+02 0.016 26.9 16.4 41 108-154 93-133 (464)
159 1fxk_C Protein (prefoldin); ar 29.7 90 0.0031 25.7 5.6 32 125-156 12-43 (133)
160 1dow_A Alpha-catenin; four-hel 29.6 3.3E+02 0.011 25.0 10.5 67 77-162 7-80 (205)
161 3l39_A Putative PHOU-like phos 29.5 3.1E+02 0.011 24.6 16.3 76 75-161 28-117 (227)
162 2p2u_A HOST-nuclease inhibitor 29.5 2.5E+02 0.0084 24.8 8.7 33 116-148 18-50 (171)
163 3viq_B Mating-type switching p 29.4 56 0.0019 26.8 4.1 44 122-165 23-68 (85)
164 2xu6_A MDV1 coiled coil; prote 29.3 1.5E+02 0.005 23.8 6.4 47 115-161 15-61 (72)
165 1rw2_A ATP-dependent DNA helic 29.2 57 0.0019 28.8 4.4 76 74-165 53-132 (152)
166 2wq1_A General control protein 29.0 47 0.0016 23.2 3.0 25 107-138 7-31 (33)
167 1zvu_A Topoisomerase IV subuni 29.0 1.6E+02 0.0054 32.1 8.6 43 107-154 315-357 (716)
168 3ugo_A RNA polymerase sigma fa 28.5 66 0.0022 29.6 4.9 30 87-116 28-59 (245)
169 3a7o_A Autophagy protein 16; c 28.5 1.5E+02 0.005 24.0 6.2 27 103-134 19-45 (75)
170 1ses_A Seryl-tRNA synthetase; 28.5 70 0.0024 31.9 5.5 27 96-124 33-59 (421)
171 3ehh_A Sensor kinase (YOCF pro 28.4 2E+02 0.0069 23.8 7.6 8 215-222 95-102 (218)
172 3thf_A Protein shroom; coiled- 28.4 3.6E+02 0.012 25.0 16.2 35 215-249 117-164 (190)
173 2p32_A Heat shock 70 kDa prote 28.3 2.4E+02 0.0082 22.9 9.0 60 189-249 18-87 (120)
174 4dzo_A Mitotic spindle assembl 28.0 87 0.003 26.7 5.3 22 120-141 3-24 (123)
175 1kd8_A GABH AIV, GCN4 acid bas 27.9 40 0.0014 24.0 2.6 26 106-138 7-32 (36)
176 2xkj_E Topoisomerase IV; type 27.8 77 0.0027 34.7 6.0 59 100-158 673-740 (767)
177 3jsv_C NF-kappa-B essential mo 27.6 1.2E+02 0.0041 25.4 5.8 37 121-157 23-59 (94)
178 3qne_A Seryl-tRNA synthetase, 27.4 95 0.0032 32.1 6.3 34 93-128 35-68 (485)
179 1m1j_C Fibrinogen gamma chain; 27.2 5E+02 0.017 26.2 11.7 28 122-149 85-112 (409)
180 2iak_A Bullous pemphigoid anti 26.7 3.2E+02 0.011 23.8 16.7 48 85-132 24-78 (224)
181 3rrk_A V-type ATPase 116 kDa s 26.7 1.5E+02 0.0051 27.9 7.2 47 108-157 223-273 (357)
182 2lw1_A ABC transporter ATP-bin 26.5 1.2E+02 0.0041 23.9 5.5 16 122-137 30-45 (89)
183 4ew8_A Sensor protein DIVL; si 26.4 3E+02 0.01 23.4 12.2 45 118-162 21-66 (268)
184 1u00_A HSC66, chaperone protei 26.3 1.8E+02 0.0063 26.2 7.4 11 70-80 116-126 (227)
185 3lof_A Heat shock 70 kDa prote 26.2 2.3E+02 0.0079 22.5 7.3 50 85-140 6-56 (113)
186 2lsj_B DNA polymerase kappa; R 31.7 14 0.00049 24.5 0.0 18 93-110 6-23 (26)
187 3fhn_A Protein transport prote 25.7 2.7E+02 0.0091 30.3 9.6 14 122-135 21-34 (706)
188 4b9q_A Chaperone protein DNAK; 25.5 2.7E+02 0.0093 28.5 9.3 13 69-81 506-518 (605)
189 3d2f_A Heat shock protein homo 24.8 2.1E+02 0.0072 30.0 8.5 23 215-237 631-653 (675)
190 3u5e_h 60S ribosomal protein L 24.2 1.4E+02 0.0047 25.8 5.8 40 100-142 31-71 (120)
191 2ld7_B Paired amphipathic heli 24.2 50 0.0017 25.9 2.8 33 110-142 29-61 (75)
192 2fzf_A Hypothetical protein; s 24.1 3.2E+02 0.011 22.9 12.5 60 183-242 105-164 (175)
193 2cly_A ATP synthase B chain, m 23.9 4.4E+02 0.015 24.5 10.6 13 38-50 15-27 (214)
194 2y3a_B Phosphatidylinositol 3- 23.8 3.8E+02 0.013 25.8 9.5 53 77-145 11-63 (302)
195 2hy6_A General control protein 23.8 61 0.0021 22.8 2.8 28 104-138 5-32 (34)
196 3a7p_A Autophagy protein 16; c 23.2 4.1E+02 0.014 23.8 9.3 34 121-161 82-115 (152)
197 1g8x_A Myosin II heavy chain f 23.2 6E+02 0.021 28.3 12.0 52 108-159 852-910 (1010)
198 3lss_A Seryl-tRNA synthetase; 23.0 2E+02 0.007 29.6 7.8 34 93-128 39-72 (484)
199 2aze_B Transcription factor E2 22.7 1.1E+02 0.0037 25.5 4.7 29 213-241 10-38 (106)
200 4g2k_A General control protein 22.7 1.9E+02 0.0067 25.3 6.4 14 125-138 32-45 (125)
201 2spc_A Spectrin; cytoskeleton; 22.6 2.6E+02 0.009 21.4 12.0 23 83-105 5-27 (107)
202 3kin_B Kinesin heavy chain; mo 22.4 1.4E+02 0.0048 24.9 5.4 28 216-243 89-116 (117)
203 1bg1_A Protein (transcription 22.3 5.5E+02 0.019 27.4 11.0 11 173-183 134-144 (596)
204 3ghg_C Fibrinogen gamma chain; 22.3 4E+02 0.014 27.1 9.7 25 125-149 88-112 (411)
205 2oeq_A Protein of unknown func 22.2 2.8E+02 0.0094 22.8 7.2 37 214-251 69-105 (122)
206 2bsk_B Mitochondrial import in 22.2 1.2E+02 0.004 24.3 4.7 55 45-100 18-72 (90)
207 3cra_A Protein MAZG; tandem-re 22.0 3.6E+02 0.012 25.9 8.8 116 93-227 145-260 (265)
208 1wle_A Seryl-tRNA synthetase; 22.0 3.5E+02 0.012 27.9 9.3 36 92-129 71-106 (501)
209 2xcs_B DNA gyrase subunit B, D 21.8 1.1E+02 0.0038 33.2 5.8 37 101-137 615-653 (692)
210 2q6q_A Spindle POLE BODY compo 21.8 2.5E+02 0.0086 22.5 6.4 37 122-158 11-47 (74)
211 1vh6_A Flagellar protein FLIS; 21.6 2.1E+02 0.0071 24.8 6.5 32 103-134 17-48 (145)
212 4aj5_1 SKA3, spindle and kinet 21.3 3.7E+02 0.013 22.7 7.7 15 93-107 4-18 (101)
213 3qi3_A High affinity CGMP-spec 21.2 20 0.00069 37.6 0.0 68 41-134 89-156 (533)
214 3s9g_A Protein hexim1; cyclin 21.2 2.8E+02 0.0094 23.6 6.9 35 108-142 7-41 (104)
215 1l8d_A DNA double-strand break 21.2 2.1E+02 0.0071 22.7 6.0 37 215-251 9-45 (112)
216 2p22_A Suppressor protein STP2 21.0 2.9E+02 0.0098 25.1 7.5 14 150-163 13-26 (174)
217 3q0x_A Centriole protein; cent 21.0 1.3E+02 0.0046 28.3 5.5 42 97-138 175-216 (228)
218 1deb_A APC protein, adenomatou 20.8 2.8E+02 0.0096 21.1 6.3 39 213-251 14-52 (54)
219 1hjb_A Ccaat/enhancer binding 20.6 1.1E+02 0.0038 24.9 4.3 54 81-142 25-78 (87)
220 3qc1_A Immunoglobulin-binding 20.5 5.2E+02 0.018 24.1 11.7 46 41-94 33-78 (243)
221 3fx0_A NF-kappa-B essential mo 20.4 2E+02 0.0067 24.2 5.8 37 121-157 38-74 (96)
222 3szr_A Interferon-induced GTP- 20.3 7.1E+02 0.024 25.5 13.7 24 225-248 582-605 (608)
223 3m62_A Ubiquitin conjugation f 20.3 3.2E+02 0.011 30.8 9.1 40 93-134 390-429 (968)
224 3rf3_A Vinculin, metavinculin; 20.2 4.5E+02 0.015 24.7 9.0 97 83-192 131-249 (258)
225 3hnw_A Uncharacterized protein 20.2 1.6E+02 0.0056 25.4 5.5 19 121-139 89-107 (138)
226 3uux_B Mitochondrial division 20.1 3.6E+02 0.012 25.9 8.3 53 108-160 164-216 (242)
No 1
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=96.57 E-value=0.015 Score=49.71 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 192 RQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 192 RQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~ 247 (415)
..+...|++.+++++.++|+++...-|..|+.++++|.+.++...+.++..+++|+
T Consensus 52 ~di~~lfiNmHhLlNeyRPhQARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~L~ 107 (108)
T 1ykh_A 52 ENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLT 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999999999999988888888877764
No 2
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=95.34 E-value=0.0033 Score=52.46 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=52.4
Q ss_pred HHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q psy10214 148 QNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLAR 227 (415)
Q Consensus 148 qnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqR 227 (415)
.+|++++...|..++.+..++.....+|+...|...+ ....++..-++ .+..++.|.++.+.+||..||+||+.
T Consensus 13 ~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi----~Emq~Ir~tvy--eLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 13 NELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQL----AEMQQIRNTVY--ERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp ----CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777655544454457766655555 66677777777 45678888899999999999999998
Q ss_pred HHHHH
Q psy10214 228 KEELI 232 (415)
Q Consensus 228 KErLI 232 (415)
++.-+
T Consensus 87 r~~q~ 91 (92)
T 3vp9_A 87 RDHQI 91 (92)
T ss_dssp -----
T ss_pred cCCCC
Confidence 87644
No 3
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.91 E-value=0.0023 Score=61.52 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy10214 85 KFLDLARQ 92 (415)
Q Consensus 85 kFid~Arq 92 (415)
.|+++|+.
T Consensus 131 el~~~a~~ 138 (449)
T 3iot_A 131 EIPALDKE 138 (449)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 4
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.05 E-value=3.4 Score=40.49 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 211 ELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 211 e~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
...+.++|+.|+.|-+|-+.+|.+...+|++....++|+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 346689999999999999999999999999999999998
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.64 E-value=1.2 Score=44.54 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+++++.+++..++...+.+++.++.++.|.+-++.++.
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999999999999999998865
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=90.67 E-value=6 Score=40.25 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhc
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYD--------------KIAVWQNLLSDLQG 251 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~e--------------KIeeWQsvL~dlq~ 251 (415)
+++..|+++..+|+|.|--|+.|++ .++.++..++.|++
T Consensus 138 ~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~q 190 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQ 190 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHh
Confidence 4577788888888888877765432 34557777777755
No 7
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=89.97 E-value=8.6 Score=32.97 Aligned_cols=115 Identities=14% Similarity=0.185 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-------hhHHHHhhhhchhHHHHHHHHHHHHH----HHHHHh-hhHHHHHHHhH
Q psy10214 84 LKFLDLARQMEAFFLQKRFLLSALK-------PELIVKEVNMVTKDIVDLRHDLARKE----ELIKRH-YDKIAVWQNLL 151 (415)
Q Consensus 84 ~kFid~Arq~E~fFLqkr~~ls~~k-------pe~i~ke~n~~~~di~eLR~ElaRKn----aLLrkh-y~KIavWqnLl 151 (415)
++|..-++.+++|.-.+.-.|+... .+.+++..+.+..||......+.... .|+... |.-...+...+
T Consensus 3 q~F~~~~~~l~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~i~~~l 82 (214)
T 1s35_A 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRL 82 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 5899999999999988888776532 24555555555555555444333322 333332 22223333344
Q ss_pred HhHHHHhhhhhcccccccccchhhHhHhHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10214 152 SDLQSCLQVLTKEDEVSTTLEKDEIKLEID--QATLKFLDLARQMEAFFLQKRFLLS 206 (415)
Q Consensus 152 sdfQscLs~LSkqE~ser~~DqdEIKv~VE--q~tnRFLD~ARQLE~FFLQKrlllS 206 (415)
+.+...-..|..-. .+-+..++ .....|...+..++.+.-.+...++
T Consensus 83 ~~L~~~w~~L~~~~--------~~r~~~L~~~l~l~~F~~~~~~~~~Wl~~~E~~l~ 131 (214)
T 1s35_A 83 EGLDTGWDALGRMW--------ESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLA 131 (214)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333331110 00111111 1245677777777777666655554
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.88 E-value=17 Score=33.63 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KI 144 (415)
++.+++.++.+++.-|...-.||
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 9
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=87.68 E-value=15 Score=32.79 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh--------hHHHHhhhhchhHHHHHHHHHHHHH----HHHHHhhhH--
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSALKP--------ELIVKEVNMVTKDIVDLRHDLARKE----ELIKRHYDK-- 143 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~~kp--------e~i~ke~n~~~~di~eLR~ElaRKn----aLLrkhy~K-- 143 (415)
.+|+...+|...|..+|+|.-.+.-.|+..-+ +.++|....|..|+......+.... +|+...|.-
T Consensus 11 kLe~l~~~F~~~~~e~~~Wl~e~e~~l~~~~~~g~dl~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~ 90 (250)
T 1quu_A 11 RLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAV 90 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh
Confidence 46777899999999999999888777774332 3344554555556555555444332 455544431
Q ss_pred ---------HHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10214 144 ---------IAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSA 207 (415)
Q Consensus 144 ---------IavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa 207 (415)
...|++|.+.....-..| .+.-+..-.+|.....|...+..++.|.-.+...++.
T Consensus 91 ~I~~r~~~l~~~W~~L~~~~~~R~~~L---------~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~ 154 (250)
T 1quu_A 91 NVNDRCQKICDQWDRLGTLTQKRREAL---------ERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQD 154 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 223444333333222222 1122223335555568888888999999887766654
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.30 E-value=41 Score=42.17 Aligned_cols=42 Identities=10% Similarity=0.241 Sum_probs=31.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 210 Pe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.++.++.+++..+..|+|-++||...-..-..|...+++++.
T Consensus 2057 ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2057 ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 334556777777777777788888888888889888888753
No 11
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=86.84 E-value=15 Score=31.97 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------ChhHHHHhhhhchhHHHH
Q psy10214 82 ATLKFLDLARQMEAFFLQKRFLLSAL-------KPELIVKEVNMVTKDIVD 125 (415)
Q Consensus 82 ~~~kFid~Arq~E~fFLqkr~~ls~~-------kpe~i~ke~n~~~~di~e 125 (415)
...+|+.-++.+.+|.-.+.-.|+.. ..|.++++.+.+.+||..
T Consensus 14 ~~~~F~~~~~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~ 64 (218)
T 3fb2_A 14 DLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDA 64 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999998888642 234555655555555554
No 12
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=86.27 E-value=8.2 Score=31.03 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
++.+..+..+|++.+.-+....+++++|+..|..+.+
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555666677777777888888888888888763
No 13
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=85.59 E-value=26 Score=33.63 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh--------hHHHHhhhhchhHHHHHHHHHHHHH----HHHHHhhhH---
Q psy10214 79 IDQATLKFLDLARQMEAFFLQKRFLLSALKP--------ELIVKEVNMVTKDIVDLRHDLARKE----ELIKRHYDK--- 143 (415)
Q Consensus 79 veq~~~kFid~Arq~E~fFLqkr~~ls~~kp--------e~i~ke~n~~~~di~eLR~ElaRKn----aLLrkhy~K--- 143 (415)
++++..+|..-|..+++|.-.+.-.|+..-. +.++++...|..||......+..-. .|+...|.-
T Consensus 129 Le~~~~~f~~~~~~~~~Wl~e~e~~l~~~~~~g~dl~~v~~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~ 208 (476)
T 1hci_A 129 LEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVN 208 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHCCGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhH
Confidence 4566789999999999999888887754322 3445555666666666665555443 444433321
Q ss_pred --------HHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10214 144 --------IAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSA 207 (415)
Q Consensus 144 --------IavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa 207 (415)
...|+.|.+.+...-..|... -...-.++.....|...+..+..|+-.+...++.
T Consensus 209 I~~~~~~l~~~W~~L~~~~~~R~~~L~~~---------~~~~~~~e~l~~~f~~~a~~~~~Wl~~~~~~l~~ 271 (476)
T 1hci_A 209 VNDRCQKICDQWDRLGTLTQKRREALERM---------EKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQD 271 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 224544444444333333110 1111122333345777777777776655555443
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.39 E-value=50 Score=41.46 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChhHH--HHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 86 FLDLARQMEAFFLQKRFLLSALKPELI--VKEVNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 86 Fid~Arq~E~fFLqkr~~ls~~kpe~i--~ke~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
|||+-+.--.-+.+||-.+...+--+- +.--+.++.+++++++||+.|+..|.+
T Consensus 1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~ 1952 (3245)
T 3vkg_A 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDV 1952 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777778888877765543221 111133555777777777777654443
No 15
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=84.23 E-value=19 Score=30.83 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ChhHHHHhhhhchhHHHHHHHHHHHH----HHHHHHhhhHHHHHHHhH
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLSAL-------KPELIVKEVNMVTKDIVDLRHDLARK----EELIKRHYDKIAVWQNLL 151 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls~~-------kpe~i~ke~n~~~~di~eLR~ElaRK----naLLrkhy~KIavWqnLl 151 (415)
..+|+.-++.+++|.-.+.-.++.. ..+.+++..+.+..+|...+..+..- +.||...+.-...+...+
T Consensus 6 l~~F~~~~~dl~~Wl~~~~~~l~~~e~~~d~~~~e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~~l 85 (185)
T 3lbx_B 6 KFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKL 85 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC--CCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4699999999999999888877653 33456666666666665554444333 355554332223334444
Q ss_pred HhHHHHhhhhhcccccccccchhhHhHhHH--HHHHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHH
Q psy10214 152 SDLQSCLQVLTKEDEVSTTLEKDEIKLEID--QATLKFLDLARQMEAFFLQKRFLLSALK-PELIVKEDIVDLRHDLARK 228 (415)
Q Consensus 152 sdfQscLs~LSkqE~ser~~DqdEIKv~VE--q~tnRFLD~ARQLE~FFLQKrlllSa~K-Pe~vvKEEI~dLK~ELqRK 228 (415)
+.+...-..|..- .+ +-+..++ -....|..-+.+++.+.-.+...++..- ... -.++..|-.+.+.-
T Consensus 86 ~~L~~~w~~L~~~------w~--~r~~~L~~~l~l~~F~~d~~~~~~Wl~~~e~~L~~~~~g~s--l~~ve~LlkkH~~f 155 (185)
T 3lbx_B 86 QQVMSRRKEMNEK------WE--ARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHT--VDSVEKLIKRHEAF 155 (185)
T ss_dssp HHHHHHHHHHHHH------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhccCCCCCC--HHHHHHHHHHHHHH
Confidence 4444333332111 00 0111111 1245677777888888776665554321 121 23455565555555
Q ss_pred HHHHHHHHHHHHH
Q psy10214 229 EELIKRHYDKIAV 241 (415)
Q Consensus 229 ErLIqKh~eKIee 241 (415)
+..|..+.+||..
T Consensus 156 e~~l~~~~e~i~~ 168 (185)
T 3lbx_B 156 EKSTASWAERFAA 168 (185)
T ss_dssp HHHHHHTHHHHHH
T ss_pred HHHHHHhHHHHHH
Confidence 5666666666554
No 16
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=83.75 E-value=3.2 Score=36.86 Aligned_cols=69 Identities=7% Similarity=0.158 Sum_probs=37.8
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchh-----HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTK-----DIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~-----di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
|++.+|+.+..+|.+|-++|... . -....-..|+.|||.+.+ +..+-|+.+.-....|....-.|..|+
T Consensus 63 ~Lhaev~~v~~~F~~Ld~~L~~l--~----~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~YD 136 (140)
T 1xaw_A 63 SLQSVLDEINKELSRLDKELDDY--R----EESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYD 136 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--C----TTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--C----CCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56778888888888888887651 1 111122357889988643 223333333333344444444455444
No 17
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=82.49 E-value=13 Score=29.46 Aligned_cols=33 Identities=6% Similarity=0.037 Sum_probs=23.1
Q ss_pred hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 110 ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 110 e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
+.++.+|+.+..++..+..++..++.-++++..
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~ 36 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQK 36 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777776666554
No 18
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=82.25 E-value=29 Score=31.53 Aligned_cols=21 Identities=5% Similarity=0.099 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10214 80 DQATLKFLDLARQMEAFFLQK 100 (415)
Q Consensus 80 eq~~~kFid~Arq~E~fFLqk 100 (415)
-.++.+|.++.+.+++|...-
T Consensus 83 ~~~L~~f~~~l~ei~~~~~~l 103 (265)
T 2q12_A 83 SSTLQQFSKVIDELSSCHAVL 103 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999987543
No 19
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=82.08 E-value=19 Score=37.73 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10214 79 IDQATLKFLDLARQMEAFFLQKRFLLSAL 107 (415)
Q Consensus 79 veq~~~kFid~Arq~E~fFLqkr~~ls~~ 107 (415)
+++...+|...|..+|+|...+.-.|+..
T Consensus 368 Le~l~~~F~~~~~~~~~Wl~~~e~~l~~~ 396 (863)
T 1sjj_A 368 LDHLAEKFRQKASIHESWTDGKEAMLQQK 396 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567889999999999998888877764
No 20
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=81.99 E-value=12 Score=32.17 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=57.5
Q ss_pred cchhHhhhhhhccccCCCCC-CCC-----CCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----hhHHH
Q psy10214 44 LLQGPLAYLEKTTSNIGLPD-GRS-----LSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK----PELIV 113 (415)
Q Consensus 44 ~f~~~l~~~~~~~~~~~~~~-~~~-----~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~k----pe~i~ 113 (415)
.|-+|+.+|...-...-+.. .+. ....+.++....++....-+|..||++|. +.+.+= .|.--
T Consensus 18 ~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~-------LIdsLP~~~~see~Q 90 (132)
T 1ykh_B 18 QFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINK-------LIDSLPGVDVSAEEQ 90 (132)
T ss_dssp HHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHSTTTTCCHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhCCCCCCCHHHH
Confidence 46677777776543333322 111 22345678888888888889999999993 333332 22222
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhh
Q psy10214 114 KEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLT 162 (415)
Q Consensus 114 ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LS 162 (415)
.+ .|.+|.+|+...++.+++--. .=+.+++.++.+|..++
T Consensus 91 ~~------ri~~L~~E~~~~~~el~~~v~---e~e~ll~~v~~~l~~i~ 130 (132)
T 1ykh_B 91 LR------KIDMLQKKLVEVEDEKIEAIK---KKEKLMRHVDSMIEDFV 130 (132)
T ss_dssp HH------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTC
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 22 555666666666554444333 33455677777776653
No 21
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=81.82 E-value=9.7 Score=31.35 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 185 LKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLR----HDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 185 nRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK----~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
..|-..-.+.|.+|+.++. ++.+..|+ .||+....-|++|.+.|+.++.-++.|.
T Consensus 20 gaFgKrEaA~Ee~Yfrqke-----------kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 20 GAFGKREQAEEERYFRARA-----------KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666777776553332 22222233 4455555555555555555555555553
No 22
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=81.61 E-value=48 Score=33.59 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhcccC
Q psy10214 224 DLARKEELIKRHY---DKIAVWQNLLSDLQGWAK 254 (415)
Q Consensus 224 ELqRKErLIqKh~---eKIeeWQsvL~dlq~~~~ 254 (415)
.+..-+.||++|. +.|+.+...++.|...+.
T Consensus 233 d~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~ 266 (450)
T 3r6n_A 233 PLQHLLEQIKELEKEREKILEYKRQVQNLVNKSK 266 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666665 577888888888866455
No 23
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=81.18 E-value=25 Score=30.06 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy10214 84 LKFLDLARQMEAFFLQKRFLLSA 106 (415)
Q Consensus 84 ~kFid~Arq~E~fFLqkr~~ls~ 106 (415)
.+|.+.+..+++|.-.+.-.|+.
T Consensus 6 ~~F~~~~~~l~~Wl~~~e~~l~~ 28 (216)
T 1u5p_A 6 QNFNTGIKDFDFWLSEVEALLAS 28 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999998888777754
No 24
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=79.78 E-value=39 Score=31.41 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cChhHHHHhhhhchhHHHHHH-HHHHHHHHHHHHhhh--------
Q psy10214 79 IDQATLKFLDLARQMEAFFLQKRFLLSA-------LKPELIVKEVNMVTKDIVDLR-HDLARKEELIKRHYD-------- 142 (415)
Q Consensus 79 veq~~~kFid~Arq~E~fFLqkr~~ls~-------~kpe~i~ke~n~~~~di~eLR-~ElaRKnaLLrkhy~-------- 142 (415)
++..+..|-.+|..+=.|--.+...++. .-.+..+.++|.|+.+...-| .|..+.+.++..-..
T Consensus 9 ~e~~~~eYe~~as~Ll~WI~~~~~~l~~r~f~~sl~~vq~~l~~f~~fr~~ekppk~~EK~~Le~ll~~lqtklr~~~~~ 88 (235)
T 2odv_A 9 LQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLK 88 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4444555666666665555555554443 334556677888877665444 444444444444211
Q ss_pred ---------HHHHHHHhHHhHHHHhhhhhcccccccccchhhHh--HhHHHHHHHHHHHHHHHHHHHHHHHHhh------
Q psy10214 143 ---------KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIK--LEIDQATLKFLDLARQMEAFFLQKRFLL------ 205 (415)
Q Consensus 143 ---------KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIK--v~VEq~tnRFLD~ARQLE~FFLQKrlll------ 205 (415)
--..|..|+.+-...-..|.. |+. -..++.+.||-..|...|.+.-.+...+
T Consensus 89 ppeg~~~~di~~~W~~Le~ae~eRe~aL~~-----------el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~ 157 (235)
T 2odv_A 89 VPPGYHPLDVEKEWGKLHVAILEREKQLRS-----------EFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRL 157 (235)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 123466665555443333311 111 1145666677666665555544332222
Q ss_pred ----hccCchhhhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcccC
Q psy10214 206 ----SALKPELIVKEDIVDLRHDLARKEELIK---------------RHYDKIAVWQNLLSDLQGWAK 254 (415)
Q Consensus 206 ----Sa~KPe~vvKEEI~dLK~ELqRKErLIq---------------Kh~eKIeeWQsvL~dlq~~~~ 254 (415)
.++|-+..+..+|..+...|+......+ ++.+--+.|..+....+...+
T Consensus 158 l~~~~a~k~~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~~~~r~~ 225 (235)
T 2odv_A 158 LAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLK 225 (235)
T ss_dssp TTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235566777778777777655444333 444444569999888876444
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.07 E-value=7.3 Score=38.80 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
+++...++.|+.+.++.+++.++++.+=+.-+..+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555555666666666666666666555444444
No 26
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=78.54 E-value=15 Score=32.53 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=59.3
Q ss_pred cchhHhhhhhhccccCCCCC-CCC-----CCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----hhHHH
Q psy10214 44 LLQGPLAYLEKTTSNIGLPD-GRS-----LSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK----PELIV 113 (415)
Q Consensus 44 ~f~~~l~~~~~~~~~~~~~~-~~~-----~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~k----pe~i~ 113 (415)
.|-+|+.+|...-...-++. .+. ....+.++....++....-+|..||++|. +.+.+= .|.--
T Consensus 18 ~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~-------LIdsLPg~~~seeeQ 90 (151)
T 1yke_B 18 QFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINK-------LIDSLPGVDVSAEEQ 90 (151)
T ss_dssp HTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCTTSSSCHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhCCCCCCCHHHH
Confidence 46667777765533222221 111 22356678888888888889999999993 344332 22222
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhc
Q psy10214 114 KEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTK 163 (415)
Q Consensus 114 ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSk 163 (415)
.+ .|.+|.+|+...++.+++-- ..=+.+++.++.+|..++.
T Consensus 91 ~~------ri~~Le~E~~~~~~el~~~v---~eae~ll~~v~~~l~~ia~ 131 (151)
T 1yke_B 91 LR------KIDMLQKKLVEVEDEKIEAI---KKKEKLLRHVDSLIEDFVD 131 (151)
T ss_dssp HH------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTCC
T ss_pred HH------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 22 56666666666665554433 3334557778888887743
No 27
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=78.45 E-value=17 Score=37.73 Aligned_cols=128 Identities=13% Similarity=0.248 Sum_probs=68.0
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH---HHhhhhhcccccccccchhhHhHhHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ---SCLQVLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ---scLs~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
+..+.|++||=.+|.++-..|.+. +|+|--+|+++...|+-++- ..+..+.+ .-+.+|.+..+-
T Consensus 326 ~~l~eiL~~f~~~R~~~~~rR~~~-----~L~k~~~r~hilegl~~a~~~iD~vI~iIr~------s~~~~~a~~~L~-- 392 (470)
T 3ilw_A 326 LRLDQLIRYYVDHQLDVIVRRTTY-----RLRKANERAHILRGLVKALDALDEVIALIRA------SETVDIARAGLI-- 392 (470)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH------CSSHHHHHHHHH--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHH--
Confidence 457889999888888887766554 44555555555444444432 22222211 112344433322
Q ss_pred HHHHHHHH-HHHHHHHHHHHH-hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 184 TLKFLDLA-RQMEAFFLQKRF-LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 184 tnRFLD~A-RQLE~FFLQKrl-llSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.+| +.+ .|.+ +.|..++ .++.+ ...-+.+|+++|..+++..+.+|....+..+.|..-|.++..
T Consensus 393 -~~f-~lse~Qa~-aIl~mrL~rLt~l-e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~ 458 (470)
T 3ilw_A 393 -ELL-DIDEIQAQ-AILDMQLRRLAAL-ERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVD 458 (470)
T ss_dssp -HHH-TCCHHHHH-HHHTCBGGGGSHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred -Hhc-CCCHHHHH-HHHHhHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 233 111 1111 1121111 11111 112336788888888888888888877777778888887753
No 28
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=78.33 E-value=32 Score=29.57 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=50.4
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 172 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 172 DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
..+++...++.....++..+|++|.. + ..+...-..+..-...|.+|..|++..++-+++-.++-+.|-+.++++
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~L-I--dsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKL-I--DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-H--HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888888889999999842 2 223333334444455799999998888877777666666666655554
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.81 E-value=16 Score=38.68 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYD 237 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~e 237 (415)
+|+.-|+++..+|+|.|--|.--.+
T Consensus 135 vLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888877654433
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.57 E-value=3.3 Score=43.67 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=27.0
Q ss_pred hhchhHHH-HHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhh
Q psy10214 117 NMVTKDIV-DLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 117 n~~~~di~-eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs 159 (415)
+++..++. +||+-++..++.|..+..+|.+-++.++++-..+.
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666 78888887777777777666665555554443333
No 31
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=77.52 E-value=29 Score=30.64 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=51.2
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 172 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 172 DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
..+++...++.....+|..+|++|.. + ..+......+..-...|.+|..|++..++-+++-.++-+.|-+.++++
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~L-I--dsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKL-I--DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-H--HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888889999999842 2 223333334444456799999998888877777666666666666555
No 32
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.92 E-value=69 Score=32.67 Aligned_cols=61 Identities=18% Similarity=0.071 Sum_probs=28.8
Q ss_pred HHhHHhHHHHhhhhhcccccccccchhhH--hHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhh
Q psy10214 148 QNLLSDLQSCLQVLTKEDEVSTTLEKDEI--KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI 213 (415)
Q Consensus 148 qnLlsdfQscLs~LSkqE~ser~~DqdEI--Kv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~v 213 (415)
+-|+.|+..|++.-+.. |...-++ +..-+.+.++-|+.+.+.+.+=..++-.+..+|+..+
T Consensus 151 qRLE~~Id~c~~~C~~s-----C~~~l~~~vD~e~ye~qqKQL~qv~a~~llP~~~~q~lp~LK~~p~ 213 (390)
T 1deq_A 151 KRLEVDIDIKIRSCKGS-----CSRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTI 213 (390)
T ss_pred HHHHHHHHHHhcccccc-----cchhhhhhccHHHHHHHHHHHHhhhhhccccccccccccccccccc
Confidence 44556665565543221 1122222 2334455556677666666544434344555555443
No 33
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=76.03 E-value=58 Score=31.38 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10214 183 ATLKFLDLARQMEAFFL 199 (415)
Q Consensus 183 ~tnRFLD~ARQLE~FFL 199 (415)
.+.+|.+..+.+..+..
T Consensus 108 ~l~~f~~~~~ei~~~~~ 124 (407)
T 4h8s_A 108 TLHYFSKVVDELNLLHT 124 (407)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666655544
No 34
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=75.11 E-value=37 Score=28.73 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ChhHHHHhhhhchhHHHHHH
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLSAL-------KPELIVKEVNMVTKDIVDLR 127 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls~~-------kpe~i~ke~n~~~~di~eLR 127 (415)
+.+|..-+..+++|.-.+.-.++.. ..+.++++...|..||....
T Consensus 2 l~qf~~~~~~~~~Wl~e~e~~l~~~~~g~dl~~v~~ll~kh~~~~~ei~~~~ 53 (213)
T 1cun_A 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 53 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4578888999999987776665432 12344555555555555443
No 35
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=73.79 E-value=32 Score=30.44 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=54.9
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHh
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 153 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsd 153 (415)
++...|+++...+-|....+++..-.++-+++++ .+ =+..++..+++.+..++....|.+-+.++...
T Consensus 72 ~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L------~~------~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkke 139 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNGRLAAELEDRRQLARML------VE------YTQNQKDVLSEKEKKLEEYKQKLARVTQVRKE 139 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777776666655333 33 44567778888888888888888888888888
Q ss_pred HHHHhhhh
Q psy10214 154 LQSCLQVL 161 (415)
Q Consensus 154 fQscLs~L 161 (415)
+.+-+..|
T Consensus 140 L~~hi~sL 147 (152)
T 4fla_A 140 LKSHIQSL 147 (152)
T ss_dssp HHHHHHTC
T ss_pred HHHHhhcC
Confidence 87777665
No 36
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=73.77 E-value=52 Score=29.78 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ChhHHHHhhhhchhHHHHHHHHHHHHH
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLSAL-------KPELIVKEVNMVTKDIVDLRHDLARKE 134 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls~~-------kpe~i~ke~n~~~~di~eLR~ElaRKn 134 (415)
.++|..-|..+++|...+...|+.. -.+..+++.+.|..||...+..+.+.+
T Consensus 6 ~qqf~~~~~el~~Wl~e~~~~l~~~~~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~ 64 (326)
T 3kbt_A 6 AQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLA 64 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999998877642 124456666667777766666665544
No 37
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.04 E-value=18 Score=32.69 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=33.3
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHH-HHhhhhchhHHHHHHHHHHHHHHHH
Q psy10214 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELI-VKEVNMVTKDIVDLRHDLARKEELI 137 (415)
Q Consensus 71 ~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i-~ke~n~~~~di~eLR~ElaRKnaLL 137 (415)
-+++++.=.++.-.+..++-+++-+=-.+-+.++++.+|+.. |+ ...+||.+||.++..+....
T Consensus 72 Qq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~---aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 72 QQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKIN---AVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555666667766666532 22 24445666666655544333
No 38
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=72.93 E-value=14 Score=38.72 Aligned_cols=128 Identities=10% Similarity=0.150 Sum_probs=67.2
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH---HHhhhhhcccccccccchhhHhHhHHHHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ---SCLQVLTKEDEVSTTLEKDEIKLEIDQAT 184 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ---scLs~LSkqE~ser~~DqdEIKv~VEq~t 184 (415)
..+.|+++|=.+|.++-..|.+.. |++-..++++...++-++. ..+..+.+. -+.++++..+.
T Consensus 365 ~l~~iL~~f~~~R~~v~~rR~~~~-----L~k~~~r~hilegl~~a~~~id~vI~iIr~s------~~~~~a~~~L~--- 430 (514)
T 2inr_A 365 GIRQIIDSYLNHQIEVVANRTKFE-----LDNAEKRMHIVEGLIKALSILDKVIELIRSS------KNKRDAKENLI--- 430 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC------CSHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHH---
Confidence 468899998888888877766544 4444444444444444332 222222111 12333333322
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 185 LKFLDLARQMEAFFLQKRF-LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 185 nRFLD~ARQLE~FFLQKrl-llSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.+|--.-.+. .+.|..++ .++.+.-+ -+.+|+++|..|++..+.+|....+..+.|..-|.++..
T Consensus 431 ~~f~lse~qa-~~IL~m~L~rLT~~e~~-kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~ 496 (514)
T 2inr_A 431 EVYEFTEEQA-EAIVMLQLYRLTNTDIV-ALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKK 496 (514)
T ss_dssp TTSSCCHHHH-HHHHTCCGGGGSTTHHH-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHH-HHHHhchHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1220000111 22332221 12222222 336788888888888888888777777888888888844
No 39
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=72.80 E-value=15 Score=30.22 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 82 ATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 82 ~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
+-..|-...+..|++|..++- .|++.+.....-++|...+.||.+.++.|.+|..+|....
T Consensus 18 aggaFgKrEaA~Ee~Yfrqke------kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 18 AGGAFGKREQAEEERYFRARA------KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444677776677766554432 1222222223345788888899998888888888876543
No 40
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=72.58 E-value=98 Score=32.42 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 182 QATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 182 q~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
.....|...|..++.|.-.+.-.++..-.. ...++.++-.++....+-|..+...|.....+-+.+.
T Consensus 606 ~l~~~F~~~a~~~~~Wi~e~e~~l~~~~~~--~~~~le~~l~~~~~~~~el~~~~~~i~~l~~l~~~L~ 672 (863)
T 1sjj_A 606 RLRKQFGAQANVIGPWIQTKMEEIGRISIE--MHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQ 672 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTC--TTTSSHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344566677777777777776666542221 0112333333344444444444444544444444444
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.12 E-value=63 Score=36.22 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh 235 (415)
++|+..|+.+++..+.++.+.
T Consensus 1029 ~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1029 KEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444444333
No 42
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=71.86 E-value=60 Score=29.65 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=36.0
Q ss_pred chhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 172 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQ 243 (415)
Q Consensus 172 DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQ 243 (415)
.++-+...+...+.+--+.|.+++.=|+-. +-+.|++++-.++-.+-.+.---++|++.|.
T Consensus 125 sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~-----------~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw~ 185 (192)
T 2p22_C 125 GDIALKKKLEQNTKKLDEESSQLETTTRSI-----------DSADDLDQFIKNYLDIRTQYHLRREKLATWD 185 (192)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSCSCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555556666655310 2244677777776666666666667777785
No 43
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=71.56 E-value=72 Score=30.47 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10214 81 QATLKFLDLARQMEAFFLQ 99 (415)
Q Consensus 81 q~~~kFid~Arq~E~fFLq 99 (415)
.++.+|.+..+.+++++-.
T Consensus 84 ~~l~~f~~~~~ei~~~~~~ 102 (385)
T 2q13_A 84 STLQQFSKVIDELSSCHAV 102 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988743
No 44
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=70.71 E-value=4.8 Score=31.83 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~ 247 (415)
.+.|.+|..+|..|++.|++..+++..++++|.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567999999999999999999999999999986
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.62 E-value=18 Score=32.63 Aligned_cols=58 Identities=22% Similarity=0.169 Sum_probs=38.8
Q ss_pred HhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 104 LSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 104 ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
.|...++.+|--.-+-++.|..|++|++.++..|+..-+-+.....+.+.++..+..|
T Consensus 51 ~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 51 NSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444333344668889999999999888888888888888888888777665
No 46
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=69.52 E-value=60 Score=28.69 Aligned_cols=76 Identities=9% Similarity=0.106 Sum_probs=39.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhHHhH
Q psy10214 76 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI-AVWQNLLSDL 154 (415)
Q Consensus 76 ~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI-avWqnLlsdf 154 (415)
..++++....++..+..++.-|-.-.-.|.....+ +-+ +|.++..++-+.+..|.+...++ +.-+.+..++
T Consensus 6 ~~~L~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~--~a~------~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dl 77 (235)
T 1sum_B 6 NEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNES--LAR------EVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPL 77 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--HHH------HHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666667777776666555443333222221 222 55556666666666666666554 3333334444
Q ss_pred HHHhh
Q psy10214 155 QSCLQ 159 (415)
Q Consensus 155 QscLs 159 (415)
..++.
T Consensus 78 r~i~~ 82 (235)
T 1sum_B 78 LTVTA 82 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 47
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=68.57 E-value=13 Score=42.25 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=29.2
Q ss_pred ChhHHHHhhhhchhHHHHHHHHH--HHHHHHHHHhhhHHHHHHHh
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDL--ARKEELIKRHYDKIAVWQNL 150 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~El--aRKnaLLrkhy~KIavWqnL 150 (415)
.++.||+||=.+|.|+-..|++. .+.+..|++--.|++..+.+
T Consensus 989 ~l~eiL~~f~~~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~v 1033 (1177)
T 4gfh_A 989 SVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMI 1033 (1177)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999888887653 33445555555566555543
No 48
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=68.26 E-value=18 Score=26.45 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHH
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~El 130 (415)
.+...-.+++++...++. +..++..+..+-..+..+.|.++++|.+++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSL--KTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666553333 555555555555666666666666666665544
No 49
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.83 E-value=9.2 Score=30.66 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLL 246 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL 246 (415)
.+-|.+|..+|+.||..|++....+..+++++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34588888888888888888888887776654
No 50
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=66.51 E-value=74 Score=28.63 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-------hhHHHHhhhhchhHHHHHHHHH
Q psy10214 84 LKFLDLARQMEAFFLQKRFLLSALK-------PELIVKEVNMVTKDIVDLRHDL 130 (415)
Q Consensus 84 ~kFid~Arq~E~fFLqkr~~ls~~k-------pe~i~ke~n~~~~di~eLR~El 130 (415)
..|-+.+..++.|.-.+.-.|+..- .+..+++.+.|..||..+...+
T Consensus 6 ~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v 59 (322)
T 1u4q_A 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRL 59 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4677778888888877777665321 2334444444444444444433
No 51
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.38 E-value=59 Score=27.43 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhH
Q psy10214 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDK 143 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~K 143 (415)
.+|+||-.|--.+.+.-. .--.+....+.||.++|..+++.+..|......
T Consensus 10 eaE~~y~~K~eel~~~~~-~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 10 DAEEWFFTKTEELNREVA-TNSELVQSGKSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468888766443322111 011112223447777777777777666544433
No 52
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=66.22 E-value=50 Score=35.78 Aligned_cols=127 Identities=12% Similarity=0.178 Sum_probs=64.7
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH---HHhhhhhcccccccccchhhHhHhHHHHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ---SCLQVLTKEDEVSTTLEKDEIKLEIDQAT 184 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ---scLs~LSkqE~ser~~DqdEIKv~VEq~t 184 (415)
..+.|+++|=.+|.++-..|.+. +|++-.+++++...++-++- ..++.+.+ .-+.++++..+.
T Consensus 548 ~l~~iL~~f~~~R~~v~~rR~~~-----~L~k~~~r~hilegl~~a~~~iD~vI~iIr~------s~~~~~a~~~L~--- 613 (692)
T 2xcs_B 548 NLKEALVHYLEHQKTVVRRRTQY-----NLRKAKDRAHILEGLRIALDHIDEIISTIRE------SDTDKVAMESLQ--- 613 (692)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT------CSSHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHh------CCCHHHHHHHHh---
Confidence 46889999888888777766554 44444455555555443333 22222211 123445544433
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 185 LKFLDLARQMEAFFLQKRF-LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250 (415)
Q Consensus 185 nRFLD~ARQLE~FFLQKrl-llSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq 250 (415)
.+|----.|. .+.|..++ .++.+.-+ -+.+|+++|..||+..+.+|....+..+.+..-|.++.
T Consensus 614 ~~f~lse~Qa-~aIL~m~L~rLt~le~~-kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 678 (692)
T 2xcs_B 614 QRFKLSEKQA-QAILDMRLRRLTGLERD-KIEAEYNELLNYISELETILADEEVLLQLVRDELTEIR 678 (692)
T ss_dssp HHHTCCHHHH-HHHHTCBGGGGSTTHHH-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHH-HHHHHhHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3341000111 12232211 11212222 33667888888888888888776665555666565553
No 53
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=66.08 E-value=22 Score=32.28 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy10214 187 FLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIK-----RHYDKIAVWQNLLSDL 249 (415)
Q Consensus 187 FLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIq-----Kh~eKIeeWQsvL~dl 249 (415)
.+++-.++|.|.+..+-.+..++ +.+-.++...+...|+.-+.||. .+.+|+++-+.++..+
T Consensus 141 ~~e~kn~le~~i~~~~~~l~~~~-~~~~~~~k~~i~~~l~~~~~wl~~~d~~~~~~~~~~L~~~~~~i 207 (227)
T 1u00_A 141 LAEQKVEAARVLESLHGALAADA-ALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDF 207 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-ccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 33444556666665555444322 22345556666666666666653 3444444444444333
No 54
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=64.72 E-value=82 Score=28.51 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy10214 185 LKFLDLARQMEAFFLQKRFLLSA 207 (415)
Q Consensus 185 nRFLD~ARQLE~FFLQKrlllSa 207 (415)
.+|...++.+..|.-.+...+++
T Consensus 222 ~~F~~~~~~l~~Wl~~~~~~l~~ 244 (323)
T 3edv_A 222 FRFFSMVRDLMLWMEDVIRQIEA 244 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 46777777777777666555543
No 55
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=64.18 E-value=82 Score=28.33 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=13.1
Q ss_pred CCchhhHhHhHHHHHHHHHHHH
Q psy10214 69 PLEKDEIKLEIDQATLKFLDLA 90 (415)
Q Consensus 69 ~~~k~E~~~~veq~~~kFid~A 90 (415)
..+.++|+..++..-.+|-.+.
T Consensus 74 ~~~~~~i~~~~~~l~~~w~~L~ 95 (322)
T 1u4q_A 74 AFDTSQVKDKRETINGRFQRIK 95 (322)
T ss_dssp SSCTHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHH
Confidence 3567777766665555554443
No 56
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=63.08 E-value=94 Score=28.63 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQ 99 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLq 99 (415)
.++...+.|.+-+|.+|+-.=+
T Consensus 28 ~le~El~EFqesSrELE~ELE~ 49 (189)
T 2v71_A 28 EARDELVEFQEGSRELEAELEA 49 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566888888888876543
No 57
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=62.63 E-value=1e+02 Score=32.21 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYD 237 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~e 237 (415)
+++..|.++..+|+|.|.-|.-..+
T Consensus 136 vLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 136 ALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888888899888887765444
No 58
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=62.06 E-value=1.8 Score=39.01 Aligned_cols=13 Identities=31% Similarity=0.854 Sum_probs=6.0
Q ss_pred HHHHHHHHH--hcccC
Q psy10214 241 VWQNLLSDL--QGWAK 254 (415)
Q Consensus 241 eWQsvL~dl--q~~~~ 254 (415)
+|.. |--. .+|.|
T Consensus 73 EWR~-LGIqQS~GW~H 87 (150)
T 1qb3_A 73 EWRG-LGITQSLGWEH 87 (150)
T ss_dssp HHHH-TTCCCCTTCEE
T ss_pred HHHH-HccccCcCcEE
Confidence 4744 4333 33655
No 59
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=61.86 E-value=1.1e+02 Score=30.01 Aligned_cols=25 Identities=8% Similarity=0.302 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
+++|.++..++..|.+.+......+
T Consensus 315 ~~~l~~~~~~~~~k~~~v~~~~~~~ 339 (406)
T 4dyl_A 315 TDELAVATEMVFRRQEMVTQLQQEL 339 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444443
No 60
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=61.29 E-value=96 Score=28.15 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVW 147 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavW 147 (415)
.+||.+-.++.++-.+.- ...+||...+.+-..++.|++-|+-.|.-+++=|.++
T Consensus 10 ~~ve~v~~~L~e~h~qy~----------------~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~F 64 (170)
T 3l4q_C 10 DSVEAVGAQLKVYHQQYQ----------------DKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIF 64 (170)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456766666666554421 1122333333355566666677776666666655444
No 61
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=60.93 E-value=1.5e+02 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10214 78 EIDQATLKFLDLARQMEAFFLQKRFLLSA 106 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~fFLqkr~~ls~ 106 (415)
+|+-++...-+..+.||.++..-.-.++.
T Consensus 246 EL~~V~~eL~~~~~~i~~~~~~~~~~l~~ 274 (413)
T 4hpq_C 246 DLAAINSLLQDAAIDVASFVRKVNMLLDE 274 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777778888776655544433
No 62
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=60.92 E-value=15 Score=38.23 Aligned_cols=128 Identities=10% Similarity=0.187 Sum_probs=63.6
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH---HHhhhhhcccccccccchhhHhHhHHHHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ---SCLQVLTKEDEVSTTLEKDEIKLEIDQAT 184 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ---scLs~LSkqE~ser~~DqdEIKv~VEq~t 184 (415)
....|+++|=.+|.++-..|.+.. |++-..++++...++-++. ..+..+.+.+ +.++++..+.
T Consensus 341 ~l~~iL~~f~~~R~~v~~rR~~~~-----L~k~~~r~hilegl~~a~~~id~vI~iIr~s~------~~~~a~~~L~--- 406 (496)
T 2nov_A 341 GIVPILSSYIAHRREVILARSRFD-----KEKAEKRLHIVEGLIRVISILDEVIALIRASE------NKADAKENLK--- 406 (496)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSS------SHHHHHSSCC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC------CHHHHHHHHH---
Confidence 468899998888888877766543 4444444554444444432 2222221111 1333322221
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 185 LKFLDLARQMEAFFLQKRF-LLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 185 nRFLD~ARQLE~FFLQKrl-llSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.+|----.+. .+.|..++ .++.+.-+ -+.+|+++|..|++..+.+|..-.+..+.|..-|.++..
T Consensus 407 ~~f~lse~qa-~~IL~m~L~rLt~~e~~-kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~ 472 (496)
T 2nov_A 407 VSYDFTEEQA-EAIVTLQLYRLTNTDVV-VLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKK 472 (496)
T ss_dssp C-CCCCHHHH-HHHHTCBGGGGSSHHHH-HHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHH-HHHHhChHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1110000111 12232211 11111112 336677777777777777777766667778888888743
No 63
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.74 E-value=63 Score=25.84 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=12.4
Q ss_pred HHHhHHhHHHHhhhhhccccccccc
Q psy10214 147 WQNLLSDLQSCLQVLTKEDEVSTTL 171 (415)
Q Consensus 147 WqnLlsdfQscLs~LSkqE~ser~~ 171 (415)
+..-.+.+...+..|.+..+.|+.|
T Consensus 29 l~~~i~~l~~~l~~l~~~g~~CPvC 53 (112)
T 1l8d_A 29 LKNKIGDLKTAIEELKKAKGKCPVC 53 (112)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECTTT
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 3334444555555555445455655
No 64
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.55 E-value=1e+02 Score=28.33 Aligned_cols=11 Identities=0% Similarity=-0.067 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy10214 122 DIVDLRHDLAR 132 (415)
Q Consensus 122 di~eLR~ElaR 132 (415)
+|.-+|....+
T Consensus 11 e~~ywk~~~~~ 21 (189)
T 2v71_A 11 ETAYWKELSMK 21 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 65
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=60.26 E-value=1.1e+02 Score=28.26 Aligned_cols=9 Identities=33% Similarity=1.054 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy10214 235 HYDKIAVWQ 243 (415)
Q Consensus 235 h~eKIeeWQ 243 (415)
.|++|..|.
T Consensus 180 ~Yerir~~~ 188 (256)
T 3na7_A 180 FYERIRRWA 188 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 344444443
No 66
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=59.00 E-value=17 Score=33.17 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10214 186 KFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH 235 (415)
Q Consensus 186 RFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh 235 (415)
..++.-.++|.|.++.+-.+..++ +.+-.++...+...|+..++||...
T Consensus 143 ~~~e~kn~le~~i~~~~~~l~~~~-~~l~~~~k~~i~~~l~~~~~~L~~~ 191 (219)
T 4e81_A 143 ELVQTRNQGDHLLHSTRKQVEEAG-DKLPADDKTAIESALTALETALKGE 191 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhCCHHHHHHHHHHHHHHHHHHhcC
Confidence 334555577787777666665422 2233667788888888888888643
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=59.00 E-value=1.6e+02 Score=29.86 Aligned_cols=35 Identities=9% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy10214 221 LRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKS 255 (415)
Q Consensus 221 LK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~s 255 (415)
...+|.+.+..+.....||..-+..+..|+..+..
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 33455555666666778888888888888765543
No 68
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=57.83 E-value=1.3e+02 Score=31.48 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q psy10214 189 DLARQMEAFFLQ 200 (415)
Q Consensus 189 D~ARQLE~FFLQ 200 (415)
+....+|.++.+
T Consensus 439 ~~~~~~~~~l~~ 450 (695)
T 2j69_A 439 AFNAALQKAFEQ 450 (695)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334455555553
No 69
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=57.64 E-value=2.4e+02 Score=31.52 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10214 180 IDQATLKFLDLARQMEAFFLQKRFLL 205 (415)
Q Consensus 180 VEq~tnRFLD~ARQLE~FFLQKrlll 205 (415)
+++...+|...|...|.|.--++..+
T Consensus 884 L~~L~qkF~rka~~~e~Wl~ek~~~l 909 (1010)
T 1g8x_A 884 IAVLLQKYNRILKKLENWATTKSVYL 909 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888888865544433
No 70
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.46 E-value=16 Score=27.30 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=14.8
Q ss_pred hchhHHHHHHHHHHHHHHHHH
Q psy10214 118 MVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 118 ~~~~di~eLR~ElaRKnaLLr 138 (415)
++.+-|+.||.|++|.+..+-
T Consensus 28 nlekiianlrdeiarleneva 48 (52)
T 3he5_B 28 NLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888776543
No 71
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=57.33 E-value=1.1e+02 Score=27.62 Aligned_cols=52 Identities=4% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-------hhHHHHhhhhchhHHHH-HHHHHHHHH
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLSALK-------PELIVKEVNMVTKDIVD-LRHDLARKE 134 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls~~k-------pe~i~ke~n~~~~di~e-LR~ElaRKn 134 (415)
..+|..-|..+++|-..+...++..- .+.++++++.|..|+.. .+..+...+
T Consensus 8 l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v~ 67 (323)
T 3edv_A 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45788888888888888776665322 23556666777777665 344444443
No 72
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.97 E-value=64 Score=24.57 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=31.2
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cChhHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSA--LKPELIVKEVNMVTKDIVDLRHDLARKEELI 137 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~--~kpe~i~ke~n~~~~di~eLR~ElaRKnaLL 137 (415)
.|||..-|..+.|-- +.+|+||-.|--.|.+ .+....+ ...+.||.+||.-+++.+..|
T Consensus 12 ~eiRaQYE~ia~knr---~EaE~~y~~k~eel~~~~~~~~~~l---~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 12 RDVRQQYESVAAKNL---QEAEEWYKSKFADLSEAANRNNDAL---RQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 466766676666554 3578999776433321 1111111 123346666666666665444
No 73
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=55.73 E-value=1e+02 Score=26.58 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=45.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhHHhH
Q psy10214 76 KLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI-AVWQNLLSDL 154 (415)
Q Consensus 76 ~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KI-avWqnLlsdf 154 (415)
..++++....++..+..++.-|-.-.-.+..... -+-+ ++.++..++-+.+..|.+...++ +..+.+..++
T Consensus 6 ~~~l~~l~~~l~~M~~~v~~~l~~a~~al~~~d~--~~a~------~v~~~d~~iD~l~~~I~~~~~~lla~~~p~a~dl 77 (216)
T 2i0m_A 6 DLELHELEQSFLGLGQLVLETASKALLALASKDK--EMAE------LIINKDHAINQGQSAIELTCARLLALQQPQVSDL 77 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHH------HHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHH------HHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 4456667777777777777666554444432222 1223 56667777777777777777765 5566555666
Q ss_pred HHHhhhh
Q psy10214 155 QSCLQVL 161 (415)
Q Consensus 155 QscLs~L 161 (415)
..++..+
T Consensus 78 r~i~~~l 84 (216)
T 2i0m_A 78 RFVISIM 84 (216)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 74
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=54.76 E-value=1.1e+02 Score=26.57 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLL 104 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~l 104 (415)
.+++.+...+.+.+..++.-|-.-.-.+
T Consensus 11 ~~l~~~~~~l~~M~~~v~~~l~~a~~al 38 (227)
T 1t72_A 11 KELEETKEQVIKMAKLVQEAIDKATEAL 38 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666665554433333
No 75
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=54.61 E-value=70 Score=24.47 Aligned_cols=46 Identities=11% Similarity=0.212 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELI 137 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLL 137 (415)
+.+|.+.+..+.+|.-.+--.|+...| +..|+..++..+.+-+++.
T Consensus 4 L~~F~~~l~el~~WL~~~e~~l~~~~~---------~~~d~~~v~~~l~~h~~l~ 49 (119)
T 3uun_A 4 LDRYQTALEEVLSWLLSAEDTLQAQGE---------ISNDVEVVKDQFHTHEGYM 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS---------CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCCCHHHHHHHHHHHHHHH
Confidence 579999999999999876555654443 2235555554444444333
No 76
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.54 E-value=9.6 Score=28.47 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=20.0
Q ss_pred HHHHHHhhhc-c-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 198 FLQKRFLLSA-L-KPELIVKEDIVDLRHDLARKEELIKRHYDKIA 240 (415)
Q Consensus 198 FLQKrlllSa-~-KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIe 240 (415)
|+++++.... . -.-++++.|+.+|+.+++...+.++..+.+++
T Consensus 6 fIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 6 FLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666654211 1 11125677777777777766666666666654
No 77
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=53.83 E-value=1.1e+02 Score=26.45 Aligned_cols=42 Identities=10% Similarity=0.194 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-------hhHHHHhhhhchhHHHH
Q psy10214 84 LKFLDLARQMEAFFLQKRFLLSALK-------PELIVKEVNMVTKDIVD 125 (415)
Q Consensus 84 ~kFid~Arq~E~fFLqkr~~ls~~k-------pe~i~ke~n~~~~di~e 125 (415)
.+|..-|..+++|-..+...++... .+.+++.+..|..|+..
T Consensus 4 ~~f~~~~~~l~~Wl~~ke~~l~~~~~g~dl~~v~~l~~k~~~f~~el~~ 52 (218)
T 3edu_A 4 FQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGA 52 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888777765432 33455555555555554
No 78
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=53.76 E-value=44 Score=35.08 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy10214 186 KFLDLARQMEA 196 (415)
Q Consensus 186 RFLD~ARQLE~ 196 (415)
++.+....++.
T Consensus 582 ~~~~~l~~~~~ 592 (675)
T 3d2f_A 582 KLQGMLNKAEE 592 (675)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333334443
No 79
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=53.36 E-value=8.4 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred hcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 106 ALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 106 ~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
-.|.|.++.| ..+|++|++|..+||.
T Consensus 6 E~kVEeLl~~-------n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 6 EAKVEELLSK-------NWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-------hHHHHHHHHHHHHHhh
Confidence 3566777766 5689999999998874
No 80
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=53.36 E-value=49 Score=27.21 Aligned_cols=46 Identities=24% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy10214 99 QKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQN 149 (415)
Q Consensus 99 qkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqn 149 (415)
++|..| +.++.|-+++.++|..++.|+++..+.+++-.+.+...+-
T Consensus 28 ~Rr~AL-----~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~ 73 (83)
T 1wlq_A 28 QRRKAL-----YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 73 (83)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777 5677776666667777777776666555555555544443
No 81
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=52.55 E-value=76 Score=34.77 Aligned_cols=125 Identities=19% Similarity=0.173 Sum_probs=68.2
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHH---HHhhhhhcccccccccchhhHhHhHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ---SCLQVLTKEDEVSTTLEKDEIKLEIDQA 183 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQ---scLs~LSkqE~ser~~DqdEIKv~VEq~ 183 (415)
+..+.|+++|=.+|.++-..|.+. +|++-.+++++...++-+|- ..+..+...+ +.+ ...
T Consensus 609 ~~l~~iL~~f~~~R~~v~~rR~~~-----~L~k~~~r~hiLegl~ia~~~iD~vI~iIr~s~---------~~k---~~L 671 (767)
T 2xkj_E 609 KSIRRILLEWIEIRKKTVTRRLQY-----HLNRIEKRLHILAGLLIAYLDIDTVIRIIREED---------QPK---PVL 671 (767)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCS---------SHH---HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhcc---------chH---HHH
Confidence 346889999888888887776554 44444455555444443332 2222221111 011 112
Q ss_pred HHHHH-HHHHHHHHHH-HHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 184 TLKFL-DLARQMEAFF-LQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 184 tnRFL-D~ARQLE~FF-LQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
+.+|- .. .|.+... ++.+ .++.+.-+ -+.+|+.+|..+|+..+.+|....+..+.|..-|.++..
T Consensus 672 ~~~f~lse-~qa~aIl~mrL~-rLt~le~~-kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~ 738 (767)
T 2xkj_E 672 MEHFNIDE-IQAEAILELKLR-HLAKLEEM-EIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAK 738 (767)
T ss_dssp HHHHTCCH-HHHHHHHHSCHH-HHHHCCHH-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCH-HHHHHHHHhHHH-HhhhhHHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 22330 00 1111111 1111 22333233 337789999999999999999888888888888888744
No 82
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=52.07 E-value=1.7e+02 Score=28.06 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy10214 185 LKFLDLARQMEAFFLQKRFLLSA 207 (415)
Q Consensus 185 nRFLD~ARQLE~FFLQKrlllSa 207 (415)
..|...+..++.|.-.+.-.+++
T Consensus 370 ~~F~~~a~~~~~Wl~e~e~~l~~ 392 (476)
T 1hci_A 370 RQFAAQANAIGPWIQNKMEEIAR 392 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777888888777666653
No 83
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=51.15 E-value=1.4e+02 Score=26.97 Aligned_cols=42 Identities=7% Similarity=0.098 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc--cC-chhhhHHHHHHHH
Q psy10214 181 DQATLKFLDLARQMEAFFLQKRFLLSA--LK-PELIVKEDIVDLR 222 (415)
Q Consensus 181 Eq~tnRFLD~ARQLE~FFLQKrlllSa--~K-Pe~vvKEEI~dLK 222 (415)
-.++.+|.+..+.+..+.......+.. .. -+..++++|..++
T Consensus 83 ~~~L~~f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~k 127 (265)
T 2q12_A 83 SSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEIL 127 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888777533322211 11 2235566666554
No 84
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.75 E-value=51 Score=29.08 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 212 LIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247 (415)
Q Consensus 212 ~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~ 247 (415)
..++.-+..|+.+|..++.+|..+.+.+.+-+.+++
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~~ 134 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVMH 134 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355777889999999999999888887777666553
No 85
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.50 E-value=2.5e+02 Score=31.48 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEE 230 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKEr 230 (415)
.+++.+++|...++.+++
T Consensus 1034 ~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1034 LLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777766555543
No 86
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.04 E-value=49 Score=26.49 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10214 123 IVDLRHDLARKEELIKR 139 (415)
Q Consensus 123 i~eLR~ElaRKnaLLrk 139 (415)
|.+|.++|..||++|++
T Consensus 42 I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 42 IDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555555543
No 87
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.76 E-value=46 Score=33.70 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHH
Q psy10214 90 ARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRH 128 (415)
Q Consensus 90 Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ 128 (415)
...+-+..-++|-++ .+-|.+-.|-|.++++|.++|+
T Consensus 30 ~~~~~~l~~~~r~~~--~~~~~l~~~~n~~sk~i~~~~~ 66 (455)
T 2dq0_A 30 VDEILKLDTEWRTKL--KEINRLRHERNKIAVEIGKRRK 66 (455)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 344445556677777 5678888999999999987654
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.97 E-value=1.3e+02 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=13.8
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 114 KEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 114 ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
.+|.+++.+|..+|.|-+|.+.+|++.-.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 33444444555555555554444444443
No 89
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.91 E-value=14 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=22.7
Q ss_pred HHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 101 RFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 101 r~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
|+.+--.|.|.++.| ..+|.+|++|..++|.
T Consensus 2 RMnQLEdKVEeLl~~-------~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSX-------LYHXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHh
Confidence 444445677888877 4588899999888874
No 90
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=48.82 E-value=56 Score=30.80 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=29.6
Q ss_pred HHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH
Q psy10214 99 QKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154 (415)
Q Consensus 99 qkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf 154 (415)
+||..| +..+.|-..+.++|..|+.|+++..+.+.+-...+.+.+.|-+-+
T Consensus 105 ~RR~AL-----~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi 155 (209)
T 2wvr_A 105 KRRKAL-----YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELI 155 (209)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777 667777555666666666666665544444444444444433333
No 91
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=48.76 E-value=64 Score=27.07 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=36.9
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhh-hhhcccccccccchhhHhHhHHHHHHHHHHHHHHH
Q psy10214 116 VNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ-VLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQM 194 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs-~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQL 194 (415)
|.++..+|.+||+.|.....-=-+-..-|..++...++|+.-+. .+ ..+..+| +.|...-+.+
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~-------------~~r~~~E---~di~~lrK~l 78 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-------------LQREEAE---NTLQSFRQDV 78 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------------HHHHHHH---HHHHHhhhcc
Confidence 44556678888877643321111112233444555666764332 22 1234455 5566666777
Q ss_pred HHHHHHHH
Q psy10214 195 EAFFLQKR 202 (415)
Q Consensus 195 E~FFLQKr 202 (415)
|.-+|.+.
T Consensus 79 D~~~l~r~ 86 (119)
T 3ol1_A 79 DNASLARL 86 (119)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 77777553
No 92
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=48.75 E-value=1.8e+02 Score=27.63 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 119 VTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 119 ~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
||..+..+..++.+-+.+|++...
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k 42 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQLYQ 42 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666665544
No 93
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=48.37 E-value=1.2e+02 Score=25.37 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=7.4
Q ss_pred HHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDL 225 (415)
Q Consensus 215 KEEI~dLK~EL 225 (415)
.+||.+|..+|
T Consensus 107 eeEl~eLq~qi 117 (119)
T 3ol1_A 107 EEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHHHh
Confidence 66777776554
No 94
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.80 E-value=1.2e+02 Score=25.32 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhH
Q psy10214 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDK 143 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~K 143 (415)
.+|+||-.|--.|.+.-. .--.+....+.||.++|..+++.+..|......
T Consensus 8 eaE~~y~~K~eel~~~~~-~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 8 EAESWYQTKYEELQQTAG-RHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 468888776444422111 001112224447888888887777666544443
No 95
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=47.72 E-value=11 Score=26.47 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=22.3
Q ss_pred HHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 101 RFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 101 r~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
|+.+--.|.|.++.+ ..+|.+|++|..+||.
T Consensus 2 RM~QLEdKVEeLl~~-------n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSK-------LYHIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHh-------hHHHHHHHHHHHHHHc
Confidence 344444677888877 4589999999988874
No 96
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=47.28 E-value=1e+02 Score=36.59 Aligned_cols=165 Identities=10% Similarity=0.107 Sum_probs=93.1
Q ss_pred CCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhH---HHHhhhhchhHHHHHHHHHH--H-----HHHHH
Q psy10214 68 SPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPEL---IVKEVNMVTKDIVDLRHDLA--R-----KEELI 137 (415)
Q Consensus 68 ~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~---i~ke~n~~~~di~eLR~Ela--R-----KnaLL 137 (415)
+-||.|=|++..+..+=| .|-|.++....+|. |+.|.|..|.++.++-..++ + .=-.+
T Consensus 924 g~~d~eli~vt~~n~l~k------------~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~ 991 (1630)
T 1xi4_A 924 GQCDLELINVCNENSLFK------------SLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVT 991 (1630)
T ss_pred cCCcHHHHHHHhcchhHH------------HHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHH
Confidence 446777677666665543 44556666666664 55566655666655532222 0 11233
Q ss_pred HHhhhHHHHHHHhHHhHHHHhhhhhcc---cccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhh
Q psy10214 138 KRHYDKIAVWQNLLSDLQSCLQVLTKE---DEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIV 214 (415)
Q Consensus 138 rkhy~KIavWqnLlsdfQscLs~LSkq---E~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vv 214 (415)
=|.|.......++++-+..++-. .. ++. ..++ .=+.+.|.-++.|..++...++.|..... ..- .-+.=.
T Consensus 992 vKaf~~aglp~EaieLLEKivl~--~s~fs~n~-~Lqn-lLi~tAIkaD~~Rv~eyI~kLd~~d~~eI-A~I--ai~lgl 1064 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLD--NSVFSEHR-NLQN-LLILTAIKADRTRVMEYINRLDNYDAPDI-ANI--AISNEL 1064 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcC--CCcccccH-HHHH-HHHHHHHHhChhhHHHHHHHhhhccHHHH-HHH--HHhCCC
Confidence 34444444444555555544311 11 100 1111 13444555567788888888885554332 221 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
-+|..++..+..+.+..+...++++..|+++++-++.
T Consensus 1065 yEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aer 1101 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAER 1101 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4677777778888888888899999999999998875
No 97
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=46.91 E-value=1.3e+02 Score=25.91 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.+++.+++++|+ ...+|..+++.=.++..+|+++..
T Consensus 72 ~~el~~l~~~l~-~np~V~~y~~Ae~~l~~LL~~I~~ 107 (151)
T 2pih_A 72 EAKIDALQEELE-EIPVIQEFRDSQMEVNDLLQLVAH 107 (151)
T ss_dssp HHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888774 445677888888888888888865
No 98
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=45.84 E-value=32 Score=35.35 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=47.8
Q ss_pred cchhhHhHhHHHH---------HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 171 LEKDEIKLEIDQA---------TLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 171 ~DqdEIKv~VEq~---------tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
..++||+.-++.. ..+.++.-.++|.|.++.+-.+..++ +.+-.+|...+...++..++||... ..++
T Consensus 507 ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 583 (605)
T 4b9q_A 507 LNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAG-DKLPADDKTAIESALTALETALKGE--DKAA 583 (605)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHSS--CHHH
T ss_pred CCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhCCHHHHHHHHHHHHHHHHHHhcC--CHHH
Confidence 4566666555422 22334444578888887776665432 2344778888888898888998754 3445
Q ss_pred HHHHHHHHhc
Q psy10214 242 WQNLLSDLQG 251 (415)
Q Consensus 242 WQsvL~dlq~ 251 (415)
.+..+++|+.
T Consensus 584 ~~~~~~~l~~ 593 (605)
T 4b9q_A 584 IEAKMQELAQ 593 (605)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 99
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=45.75 E-value=1.2e+02 Score=24.79 Aligned_cols=55 Identities=13% Similarity=0.365 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHH
Q psy10214 136 LIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQM 194 (415)
Q Consensus 136 LLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQL 194 (415)
++.++..++..+....+.+...+..++.... +.+.++...+.+.=.-||+.|-.+
T Consensus 13 lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~----~Tpq~L~~~l~~~h~~FiaLAa~l 67 (93)
T 3t98_B 13 LVQQFEVQLQQYRQQIEELENHLATQANNSH----ITPQDLSMAMQKIYQTFVALAAQL 67 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCC----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555554443221 224455444444444555555433
No 100
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.30 E-value=19 Score=28.46 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy10214 121 KDIVDLRHDLARKEELIKRHYDKIAV 146 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrkhy~KIav 146 (415)
..|.+|..++..|++.|++-...+..
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888765544433
No 101
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.16 E-value=18 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=22.2
Q ss_pred HHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 101 RFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 101 r~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
|+.+--.|.|.++.| ..+|++|+.|..++|.
T Consensus 2 RMnQLE~kVEeLl~~-------n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 2 RMXQLEXKVXELLXK-------NXHLEXEVXRLKXLVX 32 (34)
T ss_dssp CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHh
Confidence 444445677777776 4589999999888874
No 102
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=44.92 E-value=1.6e+02 Score=25.89 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=51.9
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 175 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 175 EIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
++...|+.+...+-+|...|+.-.=.++-+. .+++.-+..++..+++.+..++.|++|.+.-.++-++|+.
T Consensus 72 ~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~------~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNGRLAAELEDRRQLA------RMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666666555444333 2667788888889999999999999999999999888875
No 103
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=44.83 E-value=45 Score=28.65 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQs 156 (415)
+|.++|.|++++++.|...-.--+..+-..+||..
T Consensus 46 ~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 46 LIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88999999999888775544433344444555553
No 104
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.06 E-value=90 Score=26.46 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
++++.+.+|..++++.++++.....+|+.|+..+...+.
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~ 123 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQE 123 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888888888888888888888888888766643
No 105
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=42.81 E-value=53 Score=27.51 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
-+++||++|..||++.|.++.+.+.-......+..+|+.
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 348899999999999999888777666666666666654
No 106
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=42.14 E-value=1.1e+02 Score=25.00 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=44.6
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcChhHHHHhhhhchhHHHHHHHHHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLS-ALKPELIVKEVNMVTKDIVDLRHDLARKEE 135 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls-~~kpe~i~ke~n~~~~di~eLR~ElaRKna 135 (415)
++.+..+-+.|+|=+.+=.=.|.- +|++-. ...-+.|-.|.+.+...+.+|+.||+..|+
T Consensus 24 e~~r~~ir~eI~KElKiKeGaENL---~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 24 ELERERLRREIRKELKLKEGAENL---RRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHhHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556666666777766665555554 467766 666788888888888999999999998774
No 107
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.13 E-value=21 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=19.6
Q ss_pred hcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 106 ALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 106 ~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
-.|.|.++.| ..+|.+|++|..++|.
T Consensus 6 EdKvEeLl~~-------~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 6 EXKLXEIXSK-------XYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-------hhHHHHHHHHHHHHHc
Confidence 3567777776 4588899999888874
No 108
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=41.81 E-value=1.3e+02 Score=24.00 Aligned_cols=49 Identities=6% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHHHHHH
Q psy10214 186 KFLDLARQMEAFFLQKRFLLSALK-PELIVKEDIVDLRHDLARKEELIKR 234 (415)
Q Consensus 186 RFLD~ARQLE~FFLQKrlllSa~K-Pe~vvKEEI~dLK~ELqRKErLIqK 234 (415)
..+++-.++|.|.++.+-.+...+ -..+-.++...+...|+....||..
T Consensus 6 e~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~ 55 (113)
T 3lof_A 6 ERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDA 55 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHc
Confidence 345666789999988777665411 1224467777888888888888765
No 109
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=41.67 E-value=14 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=12.4
Q ss_pred HHhhhhchhHHHHHHHHHHHHHHH
Q psy10214 113 VKEVNMVTKDIVDLRHDLARKEEL 136 (415)
Q Consensus 113 ~ke~n~~~~di~eLR~ElaRKnaL 136 (415)
+.+|-.+.+++.+||.++.+.++.
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444445777888887776653
No 110
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=41.63 E-value=29 Score=35.63 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 187 FLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 187 FLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
.++.-..+|.|.++.+-.+..++ +.+..+|...++..++.-++||... ..++.+..+++|+.
T Consensus 532 ~~~~~n~~e~~~~~~~~~l~~~~-~~~~~~~~~~i~~~~~~~~~~l~~~--~~~~~~~~~~~l~~ 593 (605)
T 2kho_A 532 LVQTRNQGDHLLHSTRKQVEEAG-DKLPADDKTAIESALTALETALKGE--DKAAIEAKMQELAQ 593 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-ccCCHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 34444578888887776665532 3355788888888898888898632 34444555555543
No 111
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.62 E-value=34 Score=25.05 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy10214 220 DLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAK 254 (415)
Q Consensus 220 dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~ 254 (415)
+|-..|+|-++=|++..+||.+.++=+..|+-.+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566777777788888888888888888765443
No 112
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=41.47 E-value=1.1e+02 Score=30.42 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCch-hhhHHHHHHHHHHHHHHHH
Q psy10214 188 LDLARQMEAFFLQKRFLLSALKPE-LIVKEDIVDLRHDLARKEE 230 (415)
Q Consensus 188 LD~ARQLE~FFLQKrlllSa~KPe-~vvKEEI~dLK~ELqRKEr 230 (415)
||..+.++.|.-++.-. ..+. -...+...+++..+.+|+.
T Consensus 277 id~~~Di~~Fi~~~gtG---~~~~~p~Fe~y~~~~~~~~~~~~~ 317 (486)
T 3haj_A 277 ADAVEDLRWFRANHGPG---MAMNWPQFEEWSADLNRTLSRREK 317 (486)
T ss_dssp CCHHHHHHHHHHHHSTT---SCCCCCCC----------------
T ss_pred CCHHHHHHHHHHHhCCC---CCCCCCCceeCCchhhHHhhhhcc
Confidence 34456666666544322 2222 2346677788887877775
No 113
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.28 E-value=1.4e+02 Score=24.15 Aligned_cols=77 Identities=19% Similarity=0.101 Sum_probs=39.1
Q ss_pred cccchhhHhHhHHHHHHHHHHHHHHHHH---------HHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 169 TTLEKDEIKLEIDQATLKFLDLARQMEA---------FFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKI 239 (415)
Q Consensus 169 r~~DqdEIKv~VEq~tnRFLD~ARQLE~---------FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKI 239 (415)
+..++++++.-.++-. .|||..|.||. -.++.+. .|. -..++..+|.+|+.+|+....-=.+..-.|
T Consensus 4 R~~EKe~mq~LNdRlA-syIdKVR~LEqqN~~Le~~i~~l~~~~-~~~--~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 4 RTNEKVELQELNDRFA-NLIDKVRFLEQQNKILLAELEQLKGQG-KSR--LGDLYEEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp --CCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655555433 56776665554 1122111 111 223567778888887765554444444455
Q ss_pred HHHHHHHHHH
Q psy10214 240 AVWQNLLSDL 249 (415)
Q Consensus 240 eeWQsvL~dl 249 (415)
..++..+.++
T Consensus 80 dnl~~~~~~~ 89 (93)
T 3s4r_A 80 DNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 114
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=40.70 E-value=1.9e+02 Score=25.58 Aligned_cols=18 Identities=6% Similarity=0.119 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy10214 78 EIDQATLKFLDLARQMEA 95 (415)
Q Consensus 78 ~veq~~~kFid~Arq~E~ 95 (415)
.|+++-.+|-..||.+|.
T Consensus 137 ~l~Kak~~Y~~~c~e~e~ 154 (276)
T 2v0o_A 137 ALQKSKENYNAKCVEQER 154 (276)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555555554
No 115
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=40.44 E-value=84 Score=25.55 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCCCCCCCCCC
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL---QGWAKSPAHQGSTSS 264 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl---q~~~~spaq~~~~~~ 264 (415)
+|++|++.||..|...++ ...+++.=.++|+.+ +...+-.++..+.++
T Consensus 12 AVREEVevLKe~I~EL~e----~~~qLE~EN~~Lk~~aspEql~q~q~~l~~~~~ 62 (78)
T 1dip_A 12 AVREEVEILKEQIRELVE----KNSQLERENTLLKTLASPEQLEKFQSRLSPEEP 62 (78)
T ss_dssp TCTTSCHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSCSCCCSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCHHHHHHHHhccCCCCC
Confidence 456666666665543222 223455556677766 334443344434433
No 116
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=40.28 E-value=3.4e+02 Score=28.21 Aligned_cols=102 Identities=12% Similarity=0.243 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccchhhHhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQK 201 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~ARQLE~FFLQK 201 (415)
||.+|+..|......=..-|+.|...++....-|.-... .+.. ..+.+..||. +.+|++
T Consensus 96 dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~---n~~~-----~~~s~~mle~-~~~~~~------------ 154 (461)
T 3ghg_B 96 SVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKD---NENV-----VNEYSSELEK-HQLYID------------ 154 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH---HHHT-----TSCHHHHHHH-HHTHHH------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCc---chhH-----HHHHHHHHHH-HHHHHH------------
Confidence 899999988888877777777776665444443321110 0100 1112222221 112211
Q ss_pred HHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q psy10214 202 RFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257 (415)
Q Consensus 202 rlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~~~~spa 257 (415)
..-+..+...|.....++.+...||..=+..+..+..-|.+|.
T Consensus 155 -------------~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~~pc 197 (461)
T 3ghg_B 155 -------------ETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPC 197 (461)
T ss_dssp -------------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSBC
T ss_pred -------------hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 0112234444555566667777777777777777776676554
No 117
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=39.84 E-value=27 Score=23.75 Aligned_cols=21 Identities=52% Similarity=0.852 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q psy10214 19 PFPSAGPGGMGGPGNLGPGGM 39 (415)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ 39 (415)
|-|..-||-||-||..||-|-
T Consensus 6 pgprgqpgvmgfpgppgppgp 26 (31)
T 4gyx_A 6 PGPRGQPGVMGFPGPPGPPGP 26 (31)
T ss_dssp CCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCccccCCCCCCCCCC
Confidence 445667888998888887653
No 118
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=39.25 E-value=47 Score=30.14 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHhh---cChh
Q psy10214 79 IDQATLKFLDLARQM------------EAFFLQKRFLLSA---LKPE 110 (415)
Q Consensus 79 veq~~~kFid~Arq~------------E~fFLqkr~~ls~---~kpe 110 (415)
|+..+.+|+++++.+ ++|-.||.|++.+ .||+
T Consensus 9 i~~~l~~~~~~s~~iGg~v~~~a~~v~~aF~~qr~~L~~as~~kKP~ 55 (176)
T 1s0p_A 9 VDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPS 55 (176)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 777788888877654 5777888887754 3675
No 119
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=39.23 E-value=48 Score=28.39 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhHhhhhhhc
Q psy10214 24 GPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKT 55 (415)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~ 55 (415)
||+|.|+.+..|+ | ...++.||.+|++.
T Consensus 1 ~~~~~~~~~~~g~--m--~~~l~~~l~~L~~n 28 (124)
T 2d5u_A 1 GPLGSMASATLGS--S--SSSASPAVAELCQN 28 (124)
T ss_dssp CCCCCCCCCCCCC--C--CSSCCHHHHHHHTT
T ss_pred CCCCccCccCcCc--c--hHHHHHHHHHHHhC
Confidence 4566555544433 3 46799999999843
No 120
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=39.05 E-value=3.8e+02 Score=28.46 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=23.7
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIA 145 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIa 145 (415)
.+|+.+.+- +.++.|+||..-++.+.+..+|++
T Consensus 313 ~hp~~~Aer------~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 313 THPVEAAER------NYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567666665 677778888777777777777765
No 121
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.66 E-value=1e+02 Score=25.02 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=16.3
Q ss_pred HHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHH
Q psy10214 99 QKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 99 qkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaR 132 (415)
++|..| +..++|-.++.++|..++.||++
T Consensus 24 ~RR~AL-----~eaL~EN~~Lh~~ie~~~eEi~~ 52 (79)
T 2zxx_A 24 QRRKAL-----YEALKENEKLHKEIEQKDSEIAR 52 (79)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777 56777744444444444444443
No 122
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.65 E-value=2.9e+02 Score=29.00 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
..++..++.+++..+.-+..+.+.+...++.|.+++.
T Consensus 72 ~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 72 QADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555556666666666677776653
No 123
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=38.53 E-value=69 Score=27.26 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
++++.+.+|..++++..+++....++|+.|+.+++.-
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 135 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5577788888888888888888888888888876654
No 124
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.28 E-value=1.6e+02 Score=23.86 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=15.7
Q ss_pred CchhhHhHhHHHHHHHHHHHHHHHHH
Q psy10214 70 LEKDEIKLEIDQATLKFLDLARQMEA 95 (415)
Q Consensus 70 ~~k~E~~~~veq~~~kFid~Arq~E~ 95 (415)
-+|++++.==| -...|||..|.+|.
T Consensus 6 ~EKe~mq~LNd-RlAsyIdKVR~LEq 30 (93)
T 3s4r_A 6 NEKVELQELND-RFANLIDKVRFLEQ 30 (93)
T ss_dssp CCCCCHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35666654333 34578888888775
No 125
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=37.95 E-value=42 Score=34.81 Aligned_cols=56 Identities=13% Similarity=0.313 Sum_probs=24.1
Q ss_pred HHHHHHHhhcChhHHHH---------hhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHh
Q psy10214 98 LQKRFLLSALKPELIVK---------EVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSD 153 (415)
Q Consensus 98 Lqkr~~ls~~kpe~i~k---------e~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsd 153 (415)
|.++|.+|..+-+.|+. |..+..+|..+|++|+++.+++|........+|.+-+.+
T Consensus 391 L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ 455 (470)
T 3ilw_A 391 LIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAE 455 (470)
T ss_dssp HHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34445555555555542 223333344444444444444444433333444333333
No 126
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=37.73 E-value=87 Score=24.90 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhh--ccCchhhhHHHHHHHHHHHHHHHHHHH
Q psy10214 191 ARQMEAFFLQKRFLLS--ALKPELIVKEDIVDLRHDLARKEELIK 233 (415)
Q Consensus 191 ARQLE~FFLQKrlllS--a~KPe~vvKEEI~dLK~ELqRKErLIq 233 (415)
--.+|.|.++.+-.+. .++. .+-.++...++..|+....||.
T Consensus 6 rN~aE~~iy~~e~~L~~~e~~~-kl~~~ek~~i~~~i~~l~~~L~ 49 (113)
T 1ud0_A 6 SHMLESYAFNMKATVEDEKLQG-KINDEDKQKILDKCNEIISWLD 49 (113)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTT-TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhc-cCCHHHHHHHHHHHHHHHHHHH
Confidence 3466777776665554 2322 2446667777777777777775
No 127
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=36.23 E-value=2.4e+02 Score=25.35 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------ChhHHHHhhhhchhHHHH
Q psy10214 84 LKFLDLARQMEAFFLQKRFLLSAL-------KPELIVKEVNMVTKDIVD 125 (415)
Q Consensus 84 ~kFid~Arq~E~fFLqkr~~ls~~-------kpe~i~ke~n~~~~di~e 125 (415)
.+|..-|..++.|.-.+...++.. ..+.+++.+..|..|+..
T Consensus 113 ~~f~~~~~~l~~Wl~~~e~~l~~~~~g~d~~~v~~l~~~~~~f~~el~~ 161 (326)
T 3kbt_A 113 FQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGA 161 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655544332 123445555555555554
No 128
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=36.05 E-value=3.3e+02 Score=26.90 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcc
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkq 164 (415)
.-+++|.++...+..|++.-.+.-.|.. .|.|++.|+..
T Consensus 18 ~r~~lr~~~eql~~~i~~L~~~ap~W~~----aq~al~rL~eq 56 (302)
T 3ibp_A 18 ERMALRQEQEQLQSRIQSLMQRAPVWLA----AQNSLNQLSEQ 56 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHHH
Confidence 3344444444555555555557778864 45566666443
No 129
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.91 E-value=20 Score=25.24 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=21.3
Q ss_pred HHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 101 RFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 101 r~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
|+.+--.|.|.++.+ ..+|.+|++|..++|.
T Consensus 2 RMnQLEdKvEeLl~~-------~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSK-------GHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHc-------cHHHHHHHHHHHHHhc
Confidence 444445677777777 4588899999888774
No 130
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=35.80 E-value=1.3e+02 Score=24.41 Aligned_cols=45 Identities=9% Similarity=0.159 Sum_probs=30.7
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 152 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLls 152 (415)
--|++-.=..+|+.-|.++|.|.....+.......|++.|.+++.
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~ 69 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLI 69 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445567778888888888887777777778877765544
No 131
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=35.74 E-value=3.1e+02 Score=26.43 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=24.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy10214 117 NMVTKDIVDLRHDLARKEELIKRHYDKI 144 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLrkhy~KI 144 (415)
|.|.+++.++++|+.|.+..|+..+.+.
T Consensus 97 ~~~~~~L~~~~~e~ek~RK~~Ke~w~r~ 124 (279)
T 3qwe_A 97 RDYYQPLAAKRTEIEKWRKEFKEQWMKE 124 (279)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999898888853
No 132
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.25 E-value=1.1e+02 Score=25.06 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 99 QKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 99 qkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
+||..| +.++.|-..+.++|..|+.|+++....+.+
T Consensus 36 ~RR~AL-----~eaL~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 36 KRRKAL-----YEALKENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777 566777444555555555555444443333
No 133
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=35.22 E-value=2.2e+02 Score=29.92 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=34.9
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhh
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs 159 (415)
+..+.|++||=.+|.|+-..| ++-+|+|-.+|+++..-|+-++-++=.
T Consensus 315 ~~l~eiL~~f~~~R~evv~rR-----~~~~L~ka~~R~hileGl~~a~~~iDe 362 (500)
T 3lpx_A 315 FNIKEMLEAFVLHRREVVTRR-----TIFELRKARDRAHILEGLSIALANIDP 362 (500)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456788999887777776654 456778888888888888777765433
No 134
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=35.20 E-value=2e+02 Score=26.06 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=6.8
Q ss_pred CCchhhHhHhHH
Q psy10214 69 PLEKDEIKLEID 80 (415)
Q Consensus 69 ~~~k~E~~~~ve 80 (415)
..+++||.--|+
T Consensus 118 ~Ls~eeI~~m~~ 129 (219)
T 4e81_A 118 GLNEDEIQKMVR 129 (219)
T ss_dssp SCCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 356777654443
No 135
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.72 E-value=2.5e+02 Score=25.10 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
.++.-+..|+.+|..++.+|..+...+.+-+.++...
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788899999999999998888887777766554
No 136
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.58 E-value=2e+02 Score=24.03 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKE 229 (415)
Q Consensus 215 KEEI~dLK~ELqRKE 229 (415)
+.-...|+.+|..||
T Consensus 82 e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 82 EILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc
Confidence 445666777776664
No 137
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=34.49 E-value=28 Score=36.43 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=10.9
Q ss_pred hhchhHHHHHHHHHHHHHHHHH
Q psy10214 117 NMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 117 n~~~~di~eLR~ElaRKnaLLr 138 (415)
..+..|+.+|++|+.++.+.|.
T Consensus 450 rLT~~e~~kl~~E~~~l~~ei~ 471 (514)
T 2inr_A 450 RLTNTDIVALEGEHKELEALIK 471 (514)
T ss_dssp GGSTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554433
No 138
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=34.49 E-value=1.5e+02 Score=22.60 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEEL 136 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaL 136 (415)
+.+|-+....+.+|.-.+--.|+...| +..|+..++..+.+-.++
T Consensus 4 L~~f~~~l~el~~WL~e~e~~l~~~~~---------~~~d~~~v~~~l~~h~~l 48 (118)
T 3uul_A 4 LDSYQIALEEVLTWLLSAEDTFQEQDD---------ISDDVEDVKEQFATHETF 48 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCC---------CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC---------CCCCHHHHHHHHHHHHHH
Confidence 468999999999999887666665544 233555555544443333
No 139
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=34.37 E-value=51 Score=24.70 Aligned_cols=20 Identities=15% Similarity=0.327 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy10214 122 DIVDLRHDLARKEELIKRHY 141 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy 141 (415)
-..++..|+.|.++||+.|.
T Consensus 26 ~c~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 26 SCSEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HccHHHHHHHHHHHHHHHcC
Confidence 66788899999999999885
No 140
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=33.91 E-value=1.4e+02 Score=24.97 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q psy10214 121 KDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrkhy~ 142 (415)
+||.+|.+||++.|...++-..
T Consensus 54 ~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 54 EEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3899999999998877776665
No 141
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=33.80 E-value=5.4 Score=33.65 Aligned_cols=76 Identities=14% Similarity=0.040 Sum_probs=41.7
Q ss_pred CCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 60 GLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 60 ~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
|.++--+|.++.......+---+|.+|-+.|+.+...-. .-....++.++++|..-.+++..||.+++..++.|.+
T Consensus 39 gn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~----~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 39 GNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS----VNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp SSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC----CCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce----ecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666788999998887632100 0011223445555444445555666666665554443
No 142
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=33.70 E-value=47 Score=27.85 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=43.8
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHH----hhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVK----EVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 73 ~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~k----e~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
+++-..+...|-.||+.. ...+|-|---.|.+++.+.|.. +||.| +.+||+++..++. ..-|.
T Consensus 21 ~~A~~qm~~vI~~Ll~~s--~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~F---l~~Lk~~~~~~~l--------~~FW~ 87 (120)
T 1q2z_A 21 EEASNQLINHIEQFLDTN--ETPYFMKSIDCIRAFREEAIKFSEEQRFNNF---LKALQEKVEIKQL--------NHFWE 87 (120)
T ss_dssp THHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH---HHHHHHHHHTTST--------THHHH
T ss_pred HHHHHHHHHHHHHHHhCc--ccchHHHHHHHHHHHHHHHHhccChHHHHHH---HHHHHHHHHhhhH--------HHHHH
Confidence 455666667777777733 4566666666666777766653 56764 5566665543321 34454
Q ss_pred HhHHhHHHHhhhhhccc
Q psy10214 149 NLLSDLQSCLQVLTKED 165 (415)
Q Consensus 149 nLlsdfQscLs~LSkqE 165 (415)
-+. +.-|..|+++|
T Consensus 88 ~iv---~~~lgLI~~~E 101 (120)
T 1q2z_A 88 IVV---QDGITLITKEE 101 (120)
T ss_dssp HHH---HTTCCSCCSTT
T ss_pred HHH---HCCcCCCcHhh
Confidence 222 24555666665
No 143
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=32.92 E-value=1.1e+02 Score=24.30 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 249 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dl 249 (415)
.+-|.+|+..++.-|.+|+...+-|..-+..++.+
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L 47 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARN 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555444444433333333
No 144
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=32.75 E-value=37 Score=23.89 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=19.8
Q ss_pred HHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy10214 102 FLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELI 137 (415)
Q Consensus 102 ~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLL 137 (415)
+.+-..|.|.++.| ..+|.+|++|..++|
T Consensus 3 MnQledKvEel~~~-------~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASK-------LYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-------hHHHHHHHHHHHHHh
Confidence 34445667777766 457788888887776
No 145
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=32.17 E-value=3.1e+02 Score=25.36 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhh------cChhHHHHhhhhchhHHHH----HHHHHHH---HHHHHHHhhhHHHHHHHh
Q psy10214 85 KFLDLARQMEAFFL-QKRFLLSA------LKPELIVKEVNMVTKDIVD----LRHDLAR---KEELIKRHYDKIAVWQNL 150 (415)
Q Consensus 85 kFid~Arq~E~fFL-qkr~~ls~------~kpe~i~ke~n~~~~di~e----LR~ElaR---KnaLLrkhy~KIavWqnL 150 (415)
||-+.++--..||. |..+.... +-+..|-++|+..-+.+.+ |+.|+-| ++.|.+|+..|+....++
T Consensus 64 k~~EK~~Le~ll~~lqtklr~~~~~ppeg~~~~di~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~ 143 (235)
T 2odv_A 64 KEADKNRSKGIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQ 143 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555553 55444322 2467899999988766554 6667655 568888888888888888
Q ss_pred HHhHHHHh
Q psy10214 151 LSDLQSCL 158 (415)
Q Consensus 151 lsdfQscL 158 (415)
++.....|
T Consensus 144 L~~~~~~L 151 (235)
T 2odv_A 144 LNQADALL 151 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776665
No 146
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=31.97 E-value=32 Score=23.62 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDL 225 (415)
Q Consensus 215 KEEI~dLK~EL 225 (415)
|.||..|+-||
T Consensus 15 kkeiaalkfei 25 (33)
T 4dzn_A 15 KKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 147
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=31.90 E-value=3.2e+02 Score=25.48 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10214 82 ATLKFLDLARQMEAFFLQKRFL 103 (415)
Q Consensus 82 ~~~kFid~Arq~E~fFLqkr~~ 103 (415)
...+|+.-|...|+|---|.-.
T Consensus 9 ~L~qF~~d~~~e~~Wi~Eke~~ 30 (283)
T 3pe0_A 9 SLHSFVAAATKELMWLNEKEEE 30 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 4557888887777776655443
No 148
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.83 E-value=86 Score=28.26 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=11.4
Q ss_pred HHHhhcChhHHHHhhhhchhHHHHHHHHHH
Q psy10214 102 FLLSALKPELIVKEVNMVTKDIVDLRHDLA 131 (415)
Q Consensus 102 ~~ls~~kpe~i~ke~n~~~~di~eLR~Ela 131 (415)
+.||..+.+++-+-...+++++.+||.++.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~ 95 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLI 95 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333334444444443333
No 149
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.35 E-value=2e+02 Score=24.30 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
.+.++..++.+.++++..--.+|+.|++.+......+..+
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777777777777777777778888877776665554444
No 150
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=31.20 E-value=4.8e+02 Score=27.32 Aligned_cols=7 Identities=14% Similarity=0.282 Sum_probs=2.6
Q ss_pred hHHHHhh
Q psy10214 153 DLQSCLQ 159 (415)
Q Consensus 153 dfQscLs 159 (415)
+|...+.
T Consensus 403 ~l~~~i~ 409 (695)
T 2j69_A 403 SFRSYVL 409 (695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 151
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=30.97 E-value=1.3e+02 Score=24.19 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIA 145 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIa 145 (415)
.+..||.||..|+..|++-.+.++
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444443
No 152
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=30.79 E-value=3e+02 Score=24.90 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=17.5
Q ss_pred CCCchhhHhHhHHHHHHHHHHH--HHHHHHHH
Q psy10214 68 SPLEKDEIKLEIDQATLKFLDL--ARQMEAFF 97 (415)
Q Consensus 68 ~~~~k~E~~~~veq~~~kFid~--Arq~E~fF 97 (415)
+.....|.--....++++|-+. ++.+|..|
T Consensus 6 ~~~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~ 37 (174)
T 2p22_A 6 SPTNHHEMLQNLQTVVNELYREDVDYVADKIL 37 (174)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555577777787654 45666655
No 153
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=30.52 E-value=2e+02 Score=24.87 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHHhhc-ChhHHHHhhhhchhHHHHHHHHHHHHH-HHHHHhhh
Q psy10214 99 QKRFLLSAL-KPELIVKEVNMVTKDIVDLRHDLARKE-ELIKRHYD 142 (415)
Q Consensus 99 qkr~~ls~~-kpe~i~ke~n~~~~di~eLR~ElaRKn-aLLrkhy~ 142 (415)
+-||..++- ..|-. .+.-.+++||+.++..+..++ +-|+++|-
T Consensus 31 ~LRfq~atggqlen~-~rIr~vRRdIARi~Tvl~er~~~~lr~~yk 75 (124)
T 4a17_U 31 QLRIAKIAGGTANKL-GRIGIVRKAIAKYLTIINEKRRQAVKDQFK 75 (124)
T ss_dssp HHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777 55532 122337889999988888766 88888886
No 154
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=30.31 E-value=3e+02 Score=24.69 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcc
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKE 164 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkq 164 (415)
.|++|++.+.-.+..+.++.+-+.++-+++..-|.-+..|.+.
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKR 54 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKR 54 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 4566666666666666666666666666666666666655553
No 155
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.21 E-value=49 Score=23.50 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=20.4
Q ss_pred HHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10214 103 LLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 103 ~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrk 139 (415)
.+--.|.|.++.+ ..+|.+|++|..++|..
T Consensus 4 nQLE~KVEeLl~~-------~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSK-------LWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-------hHHHHHHHHHHHHHhcc
Confidence 3334566666665 55888888888887754
No 156
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=30.17 E-value=2e+02 Score=24.82 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH-HHHHHhhh
Q psy10214 99 QKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE-ELIKRHYD 142 (415)
Q Consensus 99 qkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn-aLLrkhy~ 142 (415)
+-||..++-..|-.- +.-.+++||+.++..+..++ +-|+++|-
T Consensus 32 ~LRfq~atgqlen~~-rIr~vRRdIARi~Tvl~er~~~~lr~~yk 75 (124)
T 3iz5_c 32 QLRIQKVASSGSKLN-RIHDIRKSIARVLTVINAKQRAQLRLFYK 75 (124)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 346777766555332 22347889999999888766 88999886
No 157
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=30.16 E-value=33 Score=25.42 Aligned_cols=12 Identities=17% Similarity=0.601 Sum_probs=5.1
Q ss_pred chhHHHHHHHHH
Q psy10214 119 VTKDIVDLRHDL 130 (415)
Q Consensus 119 ~~~di~eLR~El 130 (415)
+|+|+++.|.||
T Consensus 20 ~RkElqK~K~EI 31 (45)
T 1use_A 20 VKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 158
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.07 E-value=4.8e+02 Score=26.93 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=26.8
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf 154 (415)
|.+.-|+. +|.+|+..+.+........+..+...+..+...
T Consensus 93 k~q~~V~~------~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~ 133 (464)
T 1m1j_B 93 KQEKTVKP------VLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKT 133 (464)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHh------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc
Confidence 44455666 899999999888777776666555444433333
No 159
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.68 E-value=90 Score=25.74 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHH
Q psy10214 125 DLRHDLARKEELIKRHYDKIAVWQNLLSDLQS 156 (415)
Q Consensus 125 eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQs 156 (415)
.++.++.....-+.....++..+..+++.+..
T Consensus 12 ~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 12 IYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444445455544444443
No 160
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=29.57 E-value=3.3e+02 Score=24.96 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHH-------HHhhhHHHHHHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELI-------KRHYDKIAVWQN 149 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLL-------rkhy~KIavWqn 149 (415)
-.|+.+|.+|+++.+.+ +...|+ +|+ |+-.--.|+..--+.| ...=.....+..
T Consensus 7 ~aV~~Av~nfv~vG~~i-----------a~e~~~--lk~------dM~~A~~~v~~ag~~l~~a~~~~~~dP~s~~~R~~ 67 (205)
T 1dow_A 7 ASVEQATENFLEKGDKI-----------AKESQF--LKE------ELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGN 67 (205)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHCSS--SHH------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HhcCHH--HHH------HHHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHH
Confidence 46899999999998764 233444 555 3333333322222222 222223455667
Q ss_pred hHHhHHHHhhhhh
Q psy10214 150 LLSDLQSCLQVLT 162 (415)
Q Consensus 150 LlsdfQscLs~LS 162 (415)
+..+-+++|+..+
T Consensus 68 lV~aaR~lLs~vt 80 (205)
T 1dow_A 68 MVRAARALLSAVT 80 (205)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777543
No 161
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=29.54 E-value=3.1e+02 Score=24.57 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=41.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh------------
Q psy10214 75 IKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD------------ 142 (415)
Q Consensus 75 ~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~------------ 142 (415)
.-.-.+++.....++|..+..+|-- ...+ +.....++|.++..+.-+....|+.+..
T Consensus 28 ff~ll~~~a~~v~~~a~~L~~~l~~-------~~~~----~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI 96 (227)
T 3l39_A 28 FFPLLKQLSDVLSASSVLLVESMEH-------DLPT----ERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDI 96 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-------CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHH
Confidence 4556777788888888888887541 1111 1122334566666665555544444333
Q ss_pred --HHHHHHHhHHhHHHHhhhh
Q psy10214 143 --KIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 143 --KIavWqnLlsdfQscLs~L 161 (415)
-+..-++..+..+.+...+
T Consensus 97 ~~L~~~lDdI~D~ie~~a~~l 117 (227)
T 3l39_A 97 HDLASCMDDVIDGINSSAKRI 117 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555544
No 162
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=29.49 E-value=2.5e+02 Score=24.83 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=23.8
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy10214 116 VNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQ 148 (415)
Q Consensus 116 ~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWq 148 (415)
.|-.=.+|.+++.|+.|.+++++..-.+|..|-
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~ 50 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARA 50 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445688888888888888777777776663
No 163
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.35 E-value=56 Score=26.84 Aligned_cols=44 Identities=9% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHH--HHHHHHhhhHHHHHHHhHHhHHHHhhhhhccc
Q psy10214 122 DIVDLRHDLARK--EELIKRHYDKIAVWQNLLSDLQSCLQVLTKED 165 (415)
Q Consensus 122 di~eLR~ElaRK--naLLrkhy~KIavWqnLlsdfQscLs~LSkqE 165 (415)
++.+++.++... ++.+++|-.+++.|.++-+.=|.++-.|....
T Consensus 23 ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 23 SLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 444444444433 36788899999999999999998887775444
No 164
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=29.29 E-value=1.5e+02 Score=23.81 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=37.7
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 115 EVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 115 e~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
-+|+.+.||.|+.+.+++....=+...+|++-...=+..|...|..+
T Consensus 15 rKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i 61 (72)
T 2xu6_A 15 QKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQI 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 36889999999999999999888888888888876666666666555
No 165
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=29.24 E-value=57 Score=28.77 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=38.5
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHH----hhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy10214 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVK----EVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQN 149 (415)
Q Consensus 74 E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~k----e~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqn 149 (415)
++-..+...|-.||+.. ...+|-|---.|.+++.+.|.. +||.| +.+||+++..++. ..-|.-
T Consensus 53 ~A~~qM~~vI~~Ll~~s--~~~~y~KA~ecL~~lR~~~i~~~ep~~yN~F---l~~LK~~l~~~~l--------~~FW~~ 119 (152)
T 1rw2_A 53 EASNQLINHIEQFLDTN--ETPYFMKSIDCIRAFREEAIKFSEEQRFNNF---LKALQEKVEIKQL--------NHFWEI 119 (152)
T ss_dssp HHHHHHHHHHHHHHHSS--CSHHHHHHHHHHHHHHHHHHHHTCSHHHHHH---HHHHHHHHHHSCC--------HHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhccChHHHHHH---HHHHHHHHHhhhH--------HHHHHH
Confidence 34444455555555522 2345555545555566655543 46664 5566666644331 344542
Q ss_pred hHHhHHHHhhhhhccc
Q psy10214 150 LLSDLQSCLQVLTKED 165 (415)
Q Consensus 150 LlsdfQscLs~LSkqE 165 (415)
+ -+.-|..|++.|
T Consensus 120 I---v~~~lgLI~~~E 132 (152)
T 1rw2_A 120 V---VQDGITLITKEE 132 (152)
T ss_dssp H---HHHTCSSCSSSS
T ss_pred H---HHCCcccccHhh
Confidence 1 124556666665
No 166
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.01 E-value=47 Score=23.22 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=17.2
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
.|.|.++.+ +.+|.+|++|..++|.
T Consensus 7 dKVEell~~-------~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 7 DKIEENTSK-------IYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh-------hHHHHHHHHHHHHHhc
Confidence 455555554 6688888888887763
No 167
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=28.97 E-value=1.6e+02 Score=32.15 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=27.9
Q ss_pred cChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhH
Q psy10214 107 LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDL 154 (415)
Q Consensus 107 ~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdf 154 (415)
+..+.|++||=.+|.++-..|.+ -+|+|-.+++++...|+-+|
T Consensus 315 ~~l~~iL~~f~~~R~~v~~rR~~-----~~L~k~~~r~hiLegl~ia~ 357 (716)
T 1zvu_A 315 KNLLEILSEWLVFRRDTVRRRLN-----YRLEKVLKRLHILEGLLVAF 357 (716)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHH
Confidence 45688999988888888776654 44555555555555544444
No 168
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=28.51 E-value=66 Score=29.56 Aligned_cols=30 Identities=40% Similarity=0.413 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh--cChhHHHHhh
Q psy10214 87 LDLARQMEAFFLQKRFLLSA--LKPELIVKEV 116 (415)
Q Consensus 87 id~Arq~E~fFLqkr~~ls~--~kpe~i~ke~ 116 (415)
|++||++|+-......+.+. ..++.+++++
T Consensus 28 ~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~ 59 (245)
T 3ugo_A 28 IDLARKVEEGMEAIKKLSEATGLDQELIREVV 59 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcHHHHHHhh
Confidence 45688887754322222332 3455555544
No 169
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=28.51 E-value=1.5e+02 Score=24.01 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=18.8
Q ss_pred HHhhcChhHHHHhhhhchhHHHHHHHHHHHHH
Q psy10214 103 LLSALKPELIVKEVNMVTKDIVDLRHDLARKE 134 (415)
Q Consensus 103 ~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn 134 (415)
.+..++.|..-|| .+|.+|+..++=|+
T Consensus 19 ~l~~Lr~eL~~Ke-----~eI~~L~e~i~lk~ 45 (75)
T 3a7o_A 19 TLAILQKELKSKE-----QEIRRLKEVIALKN 45 (75)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHhc
Confidence 5666777777777 47777777777666
No 170
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.46 E-value=70 Score=31.92 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcChhHHHHhhhhchhHHH
Q psy10214 96 FFLQKRFLLSALKPELIVKEVNMVTKDIV 124 (415)
Q Consensus 96 fFLqkr~~ls~~kpe~i~ke~n~~~~di~ 124 (415)
..-++|-++ .+-|.+-.|-|.++++|.
T Consensus 33 ~~~~~r~~~--~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 33 LDREVQELK--KRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 344556555 456777778888887765
No 171
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=28.43 E-value=2e+02 Score=23.77 Aligned_cols=8 Identities=13% Similarity=0.924 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy10214 215 KEDIVDLR 222 (415)
Q Consensus 215 KEEI~dLK 222 (415)
.+.+..+.
T Consensus 95 ~~~l~~~~ 102 (218)
T 3ehh_A 95 KDELINIK 102 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33343333
No 172
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.36 E-value=3.6e+02 Score=25.00 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDK-------------IAVWQNLLSDL 249 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eK-------------IeeWQsvL~dl 249 (415)
.+|..+||.-++|+++++.++..+ |.-|.++|-+.
T Consensus 117 ~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eq 164 (190)
T 3thf_A 117 MEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADA 164 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999998877655 55566666554
No 173
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=28.34 E-value=2.4e+02 Score=22.90 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCchhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q psy10214 189 DLARQMEAFFLQKRFLLSA--LKPELIVKEDIVDLRHDLARKEELIKR--------HYDKIAVWQNLLSDL 249 (415)
Q Consensus 189 D~ARQLE~FFLQKrlllSa--~KPe~vvKEEI~dLK~ELqRKErLIqK--------h~eKIeeWQsvL~dl 249 (415)
+.-..+|.|.++.+-.+.. ++ ..+-.++...++..|+....||.. +..++++-+.++..+
T Consensus 18 EarN~aEsliy~~e~~L~e~~~~-dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i 87 (120)
T 2p32_A 18 GSHMGLESYAFNLKQTIEDEKLK-DKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPI 87 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTG-GGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhhh-ccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3445677777776666654 32 234566777777777777777753 334444444444444
No 174
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=27.98 E-value=87 Score=26.72 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy10214 120 TKDIVDLRHDLARKEELIKRHY 141 (415)
Q Consensus 120 ~~di~eLR~ElaRKnaLLrkhy 141 (415)
++||.+||+||+.++...+|-.
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLK 24 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLK 24 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999887776555543
No 175
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.95 E-value=40 Score=23.95 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=17.8
Q ss_pred hcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 106 ALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 106 ~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
-.|.|.++.| ..+|.+|++|..++|.
T Consensus 7 E~kVEeLl~~-------~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 7 EAEVEEIESE-------VWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------hHHHHHHHHHHHHHhc
Confidence 3566777776 4577777777777764
No 176
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=27.81 E-value=77 Score=34.72 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=32.2
Q ss_pred HHHHHhhcChhHHHH---------hhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 100 KRFLLSALKPELIVK---------EVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 100 kr~~ls~~kpe~i~k---------e~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscL 158 (415)
+||.+|..+-+.|+. |..+..+|..+|++|+++.+++|........+|.+-+.++..-+
T Consensus 673 ~~f~lse~qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~y 740 (767)
T 2xkj_E 673 EHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740 (767)
T ss_dssp HHHTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 455566556666553 33445555566666666666666555445555655555554443
No 177
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.64 E-value=1.2e+02 Score=25.41 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHH
Q psy10214 121 KDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQsc 157 (415)
.+|.+||.+++++++.+...-.--+..+=..+||.+.
T Consensus 23 ~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aE 59 (94)
T 3jsv_C 23 ELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE 59 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999988766666555555667777753
No 178
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.45 E-value=95 Score=32.09 Aligned_cols=34 Identities=21% Similarity=0.061 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHH
Q psy10214 93 MEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRH 128 (415)
Q Consensus 93 ~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ 128 (415)
+-+..-++|-++ .+-|.+-.|.|.++++|.++|+
T Consensus 35 ~~~ld~~~r~~~--~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 35 IIAEYKEWVKLR--FDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 334455667666 5668899999999999988765
No 179
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.17 E-value=5e+02 Score=26.22 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQN 149 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqn 149 (415)
...++..|+.+.+++|..+-..|..-++
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~ 112 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTD 112 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3344444555555544444444433333
No 180
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=26.71 E-value=3.2e+02 Score=23.82 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------ChhHHHHhhhhchhHHHHHHHHHHH
Q psy10214 85 KFLDLARQMEAFFLQKRFLLSAL-------KPELIVKEVNMVTKDIVDLRHDLAR 132 (415)
Q Consensus 85 kFid~Arq~E~fFLqkr~~ls~~-------kpe~i~ke~n~~~~di~eLR~ElaR 132 (415)
+|...|..+|+|--.+...|+.. -.+..+++.+.|..||......+..
T Consensus 24 ~~~~~~~~l~~Wl~e~e~~l~s~d~g~Dl~~v~~ll~kh~~~e~ei~~~~~~v~~ 78 (224)
T 2iak_A 24 VNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKE 78 (224)
T ss_dssp HHC-CHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444777888877777766532 2344555556666666554444433
No 181
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.67 E-value=1.5e+02 Score=27.89 Aligned_cols=47 Identities=9% Similarity=-0.075 Sum_probs=30.1
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh----hhHHHHHHHhHHhHHHH
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRH----YDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh----y~KIavWqnLlsdfQsc 157 (415)
.|..++.+.|. ++.++++++...++.|+.. ...+..|.+.+......
T Consensus 223 ~p~~~l~~l~~---~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 273 (357)
T 3rrk_A 223 PLGKAAARMKE---RARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVAR 273 (357)
T ss_dssp CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777555 8888888887776555544 34466666555544433
No 182
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.46 E-value=1.2e+02 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10214 122 DIVDLRHDLARKEELI 137 (415)
Q Consensus 122 di~eLR~ElaRKnaLL 137 (415)
+|.+|..+++..++.|
T Consensus 30 ~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 183
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=26.38 E-value=3e+02 Score=23.41 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=20.9
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHhHHhHHHHhhhhh
Q psy10214 118 MVTKDIVDLRHDLARKEELIKRHYDK-IAVWQNLLSDLQSCLQVLT 162 (415)
Q Consensus 118 ~~~~di~eLR~ElaRKnaLLrkhy~K-IavWqnLlsdfQscLs~LS 162 (415)
.+..++.+++.++.+.+++.++.... .+.+.+-+..+...+..|.
T Consensus 21 ~l~~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~ 66 (268)
T 4ew8_A 21 MLQSALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLE 66 (268)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33445555555555555544433332 3445555555555555553
No 184
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=26.33 E-value=1.8e+02 Score=26.19 Aligned_cols=11 Identities=36% Similarity=0.380 Sum_probs=6.2
Q ss_pred CchhhHhHhHH
Q psy10214 70 LEKDEIKLEID 80 (415)
Q Consensus 70 ~~k~E~~~~ve 80 (415)
.+++||..-++
T Consensus 116 Ls~eei~~~~~ 126 (227)
T 1u00_A 116 LTDSEIASMIK 126 (227)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666655433
No 185
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=26.24 E-value=2.3e+02 Score=22.55 Aligned_cols=50 Identities=6% Similarity=0.044 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q psy10214 85 KFLDLARQMEAFFLQKRFLLSAL-KPELIVKEVNMVTKDIVDLRHDLARKEELIKRH 140 (415)
Q Consensus 85 kFid~Arq~E~fFLqkr~~ls~~-kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkh 140 (415)
+-|++--++|.|.-+-|-.|... --+.|-.| |..+++..|....+||..+
T Consensus 6 e~ieakN~lEs~iy~~e~~l~e~~~~~kl~~e------ek~~i~~~i~e~~~wL~~~ 56 (113)
T 3lof_A 6 ERVSAKNALESYAFNMKSAVEDEGLKGKISEA------DKKKVLDKCQEVISWLDAN 56 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHH------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhccCCHH------HHHHHHHHHHHHHHHHHcC
Confidence 34566667788777766666431 11222233 5566677777766777654
No 186
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=31.71 E-value=14 Score=24.54 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhcChh
Q psy10214 93 MEAFFLQKRFLLSALKPE 110 (415)
Q Consensus 93 ~E~fFLqkr~~ls~~kpe 110 (415)
-|.||.+||..-...+.+
T Consensus 6 K~SFFdKKRser~~n~q~ 23 (26)
T 2lsj_B 6 KKSFFDKKRSERISNCQD 23 (26)
Confidence 378999999987666553
No 187
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=25.71 E-value=2.7e+02 Score=30.25 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q psy10214 122 DIVDLRHDLARKEE 135 (415)
Q Consensus 122 di~eLR~ElaRKna 135 (415)
+|.+-|.||++|=.
T Consensus 21 ~~~~~r~~l~~~~~ 34 (706)
T 3fhn_A 21 QVQNERNELASKLQ 34 (706)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 188
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=25.51 E-value=2.7e+02 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=8.0
Q ss_pred CCchhhHhHhHHH
Q psy10214 69 PLEKDEIKLEIDQ 81 (415)
Q Consensus 69 ~~~k~E~~~~veq 81 (415)
..+++||.--|+.
T Consensus 506 ~ls~~ei~~~~~~ 518 (605)
T 4b9q_A 506 GLNEDEIQKMVRD 518 (605)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4677777655543
No 189
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=24.76 E-value=2.1e+02 Score=30.03 Aligned_cols=23 Identities=4% Similarity=0.195 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYD 237 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~e 237 (415)
..-+.+|+..|++...++..+..
T Consensus 631 p~~~~~~~~~~~~~~~~~~~~~~ 653 (675)
T 3d2f_A 631 KKQAIRSKQEASQMAAMAEKLAA 653 (675)
T ss_dssp HHHHHC-----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544
No 190
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=24.21 E-value=1.4e+02 Score=25.75 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=27.8
Q ss_pred HHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH-HHHHHhhh
Q psy10214 100 KRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE-ELIKRHYD 142 (415)
Q Consensus 100 kr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn-aLLrkhy~ 142 (415)
-||..++-..=.-|++ +++||+.++..+..++ +-|+++|-
T Consensus 31 LRfq~atgql~~~Ir~---vRR~IARi~Tvl~er~~~~lr~~yk 71 (120)
T 3u5e_h 31 LKVQKLSRPSLPKIKT---VRKSIACVLTVINEQQREAVRQLYK 71 (120)
T ss_dssp HHHHHTTSSCCTHHHH---HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566665554233344 7888888888888766 88888886
No 191
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=24.17 E-value=50 Score=25.94 Aligned_cols=33 Identities=3% Similarity=0.139 Sum_probs=18.2
Q ss_pred hHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 110 ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 110 e~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
+..+|=.|.++.++.+...=+.|-..+|.+|-+
T Consensus 29 ~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pd 61 (75)
T 2ld7_B 29 ENFLRCLVIFNQEVISRAELVQLVSPFLGKFPE 61 (75)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHH
T ss_pred HHHHHHHHHhhhcCcCHHHHHHHHHHHHccCHH
Confidence 344555666666666655555555555555433
No 192
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=24.15 E-value=3.2e+02 Score=22.93 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 183 ATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVW 242 (415)
Q Consensus 183 ~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqRKErLIqKh~eKIeeW 242 (415)
++..-|..|-..|.........+...-.+..++.-+.+|-.+-.++.+++.+.+++|+..
T Consensus 105 ~~~~~L~~ai~~E~~a~~~Y~~~a~~~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l~~~ 164 (175)
T 2fzf_A 105 DIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNW 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345556666666654443333333222334446667777777777888888888887763
No 193
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=23.92 E-value=4.4e+02 Score=24.48 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCCCccchhHhh
Q psy10214 38 GMGPGGLLQGPLA 50 (415)
Q Consensus 38 ~~~~~~~f~~~l~ 50 (415)
|+=|..+|+.++.
T Consensus 15 ~~ipe~wf~~l~~ 27 (214)
T 2cly_A 15 GLIPEEFFQFLYP 27 (214)
T ss_dssp -------------
T ss_pred ccChHHHHHHHHH
Confidence 4567777776553
No 194
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=23.83 E-value=3.8e+02 Score=25.82 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy10214 77 LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIA 145 (415)
Q Consensus 77 ~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIa 145 (415)
.+||++-.+|.|+.++. + ..| ..=+++-. +...++.||+.|...|.-+.+-+.
T Consensus 11 ~~~~~~~~~l~~~~~~~----~----~~~-~~~~~~~~-------~~~~~~~~~~~k~~a~~af~~~~~ 63 (302)
T 2y3a_B 11 DSVEAVGAQLKVYHQQY----Q----DKS-REYDQLYE-------EYTRTSQELQMKRTAIEAFNETIK 63 (302)
T ss_dssp ----------CCCSSCC----H----HHH-TTTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH----H----HHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777766542 1 111 11133333 555555666666555544444333
No 195
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.80 E-value=61 Score=22.78 Aligned_cols=28 Identities=18% Similarity=0.073 Sum_probs=19.1
Q ss_pred HhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 104 LSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 104 ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
+-..|.|.++.+ ..+|.+|++|..++|.
T Consensus 5 QLEdkVEeLl~~-------~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASA-------NYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------hHHHHHHHHHHHHHhc
Confidence 334566777666 4578888888887764
No 196
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.21 E-value=4.1e+02 Score=23.84 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhh
Q psy10214 121 KDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVL 161 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~L 161 (415)
..|.+|+.|+..|+++ +...++=+.+++.-++.+
T Consensus 82 ~ki~dLeeel~eK~K~-------~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKN-------TERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3455555555555533 333444444455555544
No 197
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=23.15 E-value=6e+02 Score=28.35 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=30.7
Q ss_pred ChhHHHHhhhhchhHHH----HHHHHHHHHH---HHHHHhhhHHHHHHHhHHhHHHHhh
Q psy10214 108 KPELIVKEVNMVTKDIV----DLRHDLARKE---ELIKRHYDKIAVWQNLLSDLQSCLQ 159 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~----eLR~ElaRKn---aLLrkhy~KIavWqnLlsdfQscLs 159 (415)
.++.|-+.|+...+-+. .|+.|+.|.+ .|.+++..+.....+|+++-+..++
T Consensus 852 ~~~dL~~~W~~Le~ae~eRe~~L~~el~Rqe~L~~L~qkF~rka~~~e~Wl~ek~~~l~ 910 (1010)
T 1g8x_A 852 TPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLG 910 (1010)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577777877655443 4566666633 3456666666666666666555443
No 198
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.00 E-value=2e+02 Score=29.61 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHH
Q psy10214 93 MEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRH 128 (415)
Q Consensus 93 ~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ 128 (415)
+-+..-++|-++ .+-|.+-.|.|.+|++|.++++
T Consensus 39 ~~~ld~~~r~~~--~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 39 IIEADKKWRRTQ--FLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 334455677777 5668899999999999988877
No 199
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.73 E-value=1.1e+02 Score=25.51 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAV 241 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIee 241 (415)
.+|.|+.+|..+.+..|++|..+...|+.
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~ 38 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999998888777765
No 200
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=22.66 E-value=1.9e+02 Score=25.27 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q psy10214 125 DLRHDLARKEELIK 138 (415)
Q Consensus 125 eLR~ElaRKnaLLr 138 (415)
-+.+|++|..+||-
T Consensus 32 ~~~~~~~~~~~~ig 45 (125)
T 4g2k_A 32 HIENEIARIKKLIG 45 (125)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 45566666655543
No 201
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=22.55 E-value=2.6e+02 Score=21.36 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLS 105 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls 105 (415)
.+.|..-|+++|+|.-.+-..|+
T Consensus 5 lq~F~~d~~~~e~Wl~~~e~~l~ 27 (107)
T 2spc_A 5 LQLYMRDCELAESWMSAREAFLN 27 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999887665554
No 202
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.37 E-value=1.4e+02 Score=24.92 Aligned_cols=28 Identities=7% Similarity=0.163 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 216 EDIVDLRHDLARKEELIKRHYDKIAVWQ 243 (415)
Q Consensus 216 EEI~dLK~ELqRKErLIqKh~eKIeeWQ 243 (415)
+.+.....++....+.|+...+.++.|+
T Consensus 89 ~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 89 KKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555666666777775
No 203
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=22.35 E-value=5.5e+02 Score=27.42 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=6.4
Q ss_pred hhhHhHhHHHH
Q psy10214 173 KDEIKLEIDQA 183 (415)
Q Consensus 173 qdEIKv~VEq~ 183 (415)
-|.+..|.+..
T Consensus 134 LD~lQ~w~e~l 144 (596)
T 1bg1_A 134 LDRLENWITSL 144 (596)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45666676633
No 204
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.26 E-value=4e+02 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q psy10214 125 DLRHDLARKEELIKRHYDKIAVWQN 149 (415)
Q Consensus 125 eLR~ElaRKnaLLrkhy~KIavWqn 149 (415)
+...|+.|++.+|.++-..|.+-++
T Consensus 88 kml~~~~~~~~~~~~~~~~i~~l~~ 112 (411)
T 3ghg_C 88 KMLEEIMKYEASILTHDSSIRYLQE 112 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555556666655555544443
No 205
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=22.25 E-value=2.8e+02 Score=22.76 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 214 VKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 214 vKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
...++.+++++|+ ....|..+++.=..+..+|+++..
T Consensus 69 ~~~~l~~l~~~l~-~n~~v~~~~~Ae~~l~~ll~~I~~ 105 (122)
T 2oeq_A 69 EIEQAQKAMALAQ-QNEKLARLMALEQQMSITIAEVQQ 105 (122)
T ss_dssp HHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788887774 445666777777788888888865
No 206
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=22.16 E-value=1.2e+02 Score=24.27 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=32.9
Q ss_pred chhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 45 LQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQK 100 (415)
Q Consensus 45 f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqk 100 (415)
|+...+.|++.=+..=+++.-.-+.+++.|- +=|+.++.||+|.-..+=.-|-+.
T Consensus 18 ~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~-~Ci~~Cv~Ky~d~~~~V~~~~~~~ 72 (90)
T 2bsk_B 18 MADMYNRMTSACHRKCVPPHYKEAELSKGES-VCLDRCVSKYLDIHERMGKKLTEL 72 (90)
T ss_dssp THHHHHHHHHHHHHHHCCTTCCSSSCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCcCcCChhHh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566665545444432212223456554 678999999999987665555443
No 207
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=22.01 E-value=3.6e+02 Score=25.87 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhhhhcccccccccc
Q psy10214 93 MEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLE 172 (415)
Q Consensus 93 ~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~LSkqE~ser~~D 172 (415)
+-|+=+|+|+.-.-.--+.+..-|-++..|+.|++.++++ .+..- ..+++.|=.+|=.|+.-.+. ...|
T Consensus 145 ~~A~kiq~raa~vGfdw~~~~~v~~Kl~EEl~El~eal~~-------~~~~~---~~ieeElGDlLFalVnlAR~-~gID 213 (265)
T 3cra_A 145 MRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQ-------AVVDQ---AKLEEEMGDLLFATVNLARH-LGTK 213 (265)
T ss_dssp HHHHHHHHHHHTTTCSCSSHHHHHHHHHHHHHHHHHHHHS-------SSCCH---HHHHHHHHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHh-------ccCCH---HHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 4566788887655443333333333445566666666541 11100 12234444444333322211 1123
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q psy10214 173 KDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLAR 227 (415)
Q Consensus 173 qdEIKv~VEq~tnRFLD~ARQLE~FFLQKrlllSa~KPe~vvKEEI~dLK~ELqR 227 (415)
. ..-+.+++.||++-.+.+|.-... .-...+.+--+|.+.||.+-.+
T Consensus 214 p---E~ALr~an~KF~~Rf~~~E~~~~~-----~g~~l~~~sl~e~d~lW~~aK~ 260 (265)
T 3cra_A 214 A---EIALQKANEKFERRFREVERIVAA-----RGLEMTGVDLETMEEVWQQVKR 260 (265)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHH-----SCCCCC----CCHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcccCCHHHHHHHHHHHHH
Confidence 3 344678889999999999876532 1233555556788999988654
No 208
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.97 E-value=3.5e+02 Score=27.86 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHH
Q psy10214 92 QMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129 (415)
Q Consensus 92 q~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~E 129 (415)
.+-+..-++|-++ .+-|.+-.|-|.++++|.++++.
T Consensus 71 ~~~~ld~~~r~~~--~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 71 GIISTWQELRQLR--EQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444456667666 56788899999999999987753
No 209
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=21.85 E-value=1.1e+02 Score=33.18 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=16.0
Q ss_pred HHHHhhcChhHHHH--hhhhchhHHHHHHHHHHHHHHHH
Q psy10214 101 RFLLSALKPELIVK--EVNMVTKDIVDLRHDLARKEELI 137 (415)
Q Consensus 101 r~~ls~~kpe~i~k--e~n~~~~di~eLR~ElaRKnaLL 137 (415)
+|.+|..+-+.|+. -|..+.-|+.++++|..++.+.|
T Consensus 615 ~f~lse~Qa~aIL~m~L~rLt~le~~kl~~E~~~l~~~i 653 (692)
T 2xcs_B 615 RFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYI 653 (692)
T ss_dssp HHTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444432 12333345555555555444443
No 210
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=21.83 E-value=2.5e+02 Score=22.55 Aligned_cols=37 Identities=5% Similarity=0.185 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHh
Q psy10214 122 DIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCL 158 (415)
Q Consensus 122 di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscL 158 (415)
.+.+.+.||.|.|-++--.-.|+..|-++...++...
T Consensus 11 kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~ 47 (74)
T 2q6q_A 11 KLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888777777778877777766666444
No 211
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=21.57 E-value=2.1e+02 Score=24.78 Aligned_cols=32 Identities=19% Similarity=0.042 Sum_probs=20.9
Q ss_pred HHhhcChhHHHHhhhhchhHHHHHHHHHHHHH
Q psy10214 103 LLSALKPELIVKEVNMVTKDIVDLRHDLARKE 134 (415)
Q Consensus 103 ~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn 134 (415)
..++..-+.|++-|+-.-+.+..-|.-+.+||
T Consensus 17 v~tAsP~~Li~mLydgal~~l~~A~~aie~~d 48 (145)
T 1vh6_A 17 VNTATPGELTLMLYNGCLKFIRLAAQAIENDD 48 (145)
T ss_dssp ---CCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45667778888888877777777666666555
No 212
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.28 E-value=3.7e+02 Score=22.75 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhc
Q psy10214 93 MEAFFLQKRFLLSAL 107 (415)
Q Consensus 93 ~E~fFLqkr~~ls~~ 107 (415)
+..||-+-|-+-+++
T Consensus 4 ~~~Ff~KLR~La~tL 18 (101)
T 4aj5_1 4 IRSFCGKLRSLASTL 18 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888877766554
No 213
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Probab=21.20 E-value=20 Score=37.62 Aligned_cols=68 Identities=28% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhch
Q psy10214 41 PGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVT 120 (415)
Q Consensus 41 ~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~ 120 (415)
+-++||++|..+.+. +.+.. +=+|+|.+|+..+. . |.||+.+-.+|...|- +.+
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~f---------~i~~l~~~~~~~l~---~---------lekrv~~e~~~~~~i~----~~k 142 (533)
T 3qi3_A 89 REELIQSVLAQVAEQ-FSRAF---------KINELKAEVANHLA---V---------LEKRVELEGLKVVEIE----KCK 142 (533)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHhhhh-hcccc---------cHHHHHHHHHHHHH---H---------HHHHHHhcccchhhHH----HHH
Confidence 457899999888877 55555 77889999885443 2 4566667777776322 346
Q ss_pred hHHHHHHHHHHHHH
Q psy10214 121 KDIVDLRHDLARKE 134 (415)
Q Consensus 121 ~di~eLR~ElaRKn 134 (415)
+||.++|.+++.-+
T Consensus 143 ~~~~~~r~~~~~~~ 156 (533)
T 3qi3_A 143 SDIKKMREELAARS 156 (533)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHhhh
Confidence 67777777776543
No 214
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.18 E-value=2.8e+02 Score=23.64 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
-.|.+-||+..++.++..=+-+-+-|++||+++..
T Consensus 7 ~eeFl~KdFSe~YE~~h~ErL~~mSKqELIqEYl~ 41 (104)
T 3s9g_A 7 GSEFLQRDFSETYERYHTESLQNMSKQELIKEYLE 41 (104)
T ss_dssp -------CCHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34566677777777777777777788888887654
No 215
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.16 E-value=2.1e+02 Score=22.75 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 215 KEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
++++.+++.+|....+.+..+..+|+.-+..+..++.
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5567777777777777777777788888888877753
No 216
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.03 E-value=2.9e+02 Score=25.07 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=7.0
Q ss_pred hHHhHHHHhhhhhc
Q psy10214 150 LLSDLQSCLQVLTK 163 (415)
Q Consensus 150 LlsdfQscLs~LSk 163 (415)
+++.||+.++.|..
T Consensus 13 ~l~~Lq~~i~~l~~ 26 (174)
T 2p22_A 13 MLQNLQTVVNELYR 26 (174)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33445655555533
No 217
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.02 E-value=1.3e+02 Score=28.30 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10214 97 FLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138 (415)
Q Consensus 97 FLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLr 138 (415)
.+++|+.+-..+-+.+-.|||-.+..++++|..++..+++--
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777788888888999999999988888776544433
No 218
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.84 E-value=2.8e+02 Score=21.09 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10214 213 IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251 (415)
Q Consensus 213 vvKEEI~dLK~ELqRKErLIqKh~eKIeeWQsvL~dlq~ 251 (415)
++|.|...|++||+.-..-|-|.-..-..-+.+|+.+++
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 457788888888888777776666666667777777764
No 219
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.60 E-value=1.1e+02 Score=24.86 Aligned_cols=54 Identities=20% Similarity=0.124 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhh
Q psy10214 81 QATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142 (415)
Q Consensus 81 q~~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~ 142 (415)
.++.|.=|.+|+-|.-.-++ .+.+-+|-..++.+|..|++|+.....+|..+..
T Consensus 25 ~AarrSR~krk~r~~e~~~r--------~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHK--------VLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 35556666666655433222 2333333333344566666666665555555444
No 220
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=20.51 E-value=5.2e+02 Score=24.08 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=34.8
Q ss_pred CCccchhHhhhhhhccccCCCCCCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q psy10214 41 PGGLLQGPLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQME 94 (415)
Q Consensus 41 ~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~k~E~~~~veq~~~kFid~Arq~E 94 (415)
-.-+|..|+....+.|....- .+..+....|..++..|-+|++.+.
T Consensus 33 L~~lF~~a~~~~~~le~~~~~--------~~S~~~Q~~v~~~i~~le~~~~~v~ 78 (243)
T 3qc1_A 33 LPELFETSKKLLEDVEVATEP--------TGSRTIQDKVSKGLELLEKAAGMLS 78 (243)
T ss_dssp HHHHHHHHHHHHHHHHHCCSC--------TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999988887654321 2567788888888889999998887
No 221
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=20.36 E-value=2e+02 Score=24.24 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHH
Q psy10214 121 KDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSC 157 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQsc 157 (415)
.+|.+||.+++++++.+...-.--+..+=..+||...
T Consensus 38 ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aE 74 (96)
T 3fx0_A 38 EVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE 74 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4899999999999988776666555556667888743
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=20.32 E-value=7.1e+02 Score=25.53 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10214 225 LARKEELIKRHYDKIAVWQNLLSD 248 (415)
Q Consensus 225 LqRKErLIqKh~eKIeeWQsvL~d 248 (415)
+.+|-+-+.+-.+.+.+.+.+|.+
T Consensus 582 ~~~~R~~l~~~~~~L~~A~~~l~~ 605 (608)
T 3szr_A 582 TSDKRKFLKERLARLTQARRRLAQ 605 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555555555555544
No 223
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=20.30 E-value=3.2e+02 Score=30.84 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhcChhHHHHhhhhchhHHHHHHHHHHHHH
Q psy10214 93 MEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKE 134 (415)
Q Consensus 93 ~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di~eLR~ElaRKn 134 (415)
+|||||--|+.- +=..-++..|....+++.++++++.|-+
T Consensus 390 tecFFLT~~a~h--lG~~~~~~~~~~l~~~i~~~~~~l~~~~ 429 (968)
T 3m62_A 390 SDCFFLTLTYLH--YGLGGTLSFEEKMGSEIKALKEEIEKVK 429 (968)
T ss_dssp HHHHHHHHHHHH--HTHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999888765 4444455556666677777777775544
No 224
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=20.19 E-value=4.5e+02 Score=24.74 Aligned_cols=97 Identities=7% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHhhhhchhHH----------------HHHHHHHHHHHHHHHHhhhHHHH
Q psy10214 83 TLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDI----------------VDLRHDLARKEELIKRHYDKIAV 146 (415)
Q Consensus 83 ~~kFid~Arq~E~fFLqkr~~ls~~kpe~i~ke~n~~~~di----------------~eLR~ElaRKnaLLrkhy~KIav 146 (415)
|.+.|..++.++.++ +++.-.....| +++-+..|..++ .++|.++++-++.|++.-.-+
T Consensus 131 Vr~il~~~~~v~~~l--~~l~~~~~~~e-l~~~~~~f~~~~~~L~~~~~~Rq~eL~~~~~r~~l~~Ar~~Lk~~~p~L-- 205 (258)
T 3rf3_A 131 VRKIIRVCKGILEYL--TVAEVVETMED-LVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVL-- 205 (258)
T ss_dssp HHHHHHHHHHHHHHH--TTGGGCCSHHH-HHHHHHHHHHHHHHHHHHHHHHHTTBSCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHH--HHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHhHHhHHHHhh------hhhcccccccccchhhHhHhHHHHHHHHHHHHH
Q psy10214 147 WQNLLSDLQSCLQ------VLTKEDEVSTTLEKDEIKLEIDQATLKFLDLAR 192 (415)
Q Consensus 147 WqnLlsdfQscLs------~LSkqE~ser~~DqdEIKv~VEq~tnRFLD~AR 192 (415)
+.+.+.|++ +=.....- +.+.+-..|...++..+...+
T Consensus 206 ----~ta~k~~lrh~~~~~~~~~~a~~----nRd~v~~~m~~al~~I~~vlq 249 (258)
T 3rf3_A 206 ----ISAMKIFVTTKNSKNQGIEEALK----NRNFTVEKMSAEINEIIRVLQ 249 (258)
T ss_dssp ----HHHHHHHHHHHHHTCTTHHHHHH----HHHHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHhccCCCCCCcHHHHH----hHHHHHHHHHHHHHHHHHHHc
No 225
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.16 E-value=1.6e+02 Score=25.39 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy10214 121 KDIVDLRHDLARKEELIKR 139 (415)
Q Consensus 121 ~di~eLR~ElaRKnaLLrk 139 (415)
+++.+||.|+...+..+..
T Consensus 89 kE~~~lK~el~~~~~k~e~ 107 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAES 107 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666555544333
No 226
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.08 E-value=3.6e+02 Score=25.87 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=36.2
Q ss_pred ChhHHHHhhhhchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHhHHHHhhh
Q psy10214 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQV 160 (415)
Q Consensus 108 kpe~i~ke~n~~~~di~eLR~ElaRKnaLLrkhy~KIavWqnLlsdfQscLs~ 160 (415)
+-|.+-=..|+.+.||.|+-+.|+..+..=+..+.|++-.+.=+..|...|..
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~ 216 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQ 216 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444444577777888888888888877777777887777666666655543
Done!