Your job contains 1 sequence.
>psy10214
MMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIG
LPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVT
KDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEI
DQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIA
VWQNLLSDLQGWAKSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIV
PGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRG
GGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIGLPDGRR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10214
(415 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1MNZ6 - symbol:MED28 "Mediator of RNA polymera... 246 1.0e-23 2
UNIPROTKB|Q2TBN4 - symbol:MED28 "Mediator of RNA polymera... 246 1.0e-23 2
UNIPROTKB|E2RMT8 - symbol:MED28 "Uncharacterized protein"... 246 1.0e-23 2
UNIPROTKB|H0YAA8 - symbol:MED28 "Mediator of RNA polymera... 246 1.0e-23 2
UNIPROTKB|Q9H204 - symbol:MED28 "Mediator of RNA polymera... 246 1.0e-23 2
UNIPROTKB|I3LSW2 - symbol:MED28 "Uncharacterized protein"... 246 1.0e-23 2
RGD|1305875 - symbol:Med28 "mediator complex subunit 28" ... 241 3.4e-23 2
MGI|MGI:1914249 - symbol:Med28 "mediator of RNA polymeras... 241 8.8e-23 2
UNIPROTKB|E1C5V2 - symbol:MED28 "Uncharacterized protein"... 234 1.8e-22 2
UNIPROTKB|Q294G7 - symbol:MED28 "Mediator of RNA polymera... 257 4.3e-22 1
FB|FBgn0039337 - symbol:MED28 "Mediator complex subunit 2... 257 4.3e-22 1
ZFIN|ZDB-GENE-041121-4 - symbol:med28 "mediator complex s... 229 4.0e-19 1
DICTYBASE|DDB_G0278545 - symbol:fimC "fimbrin-3" species:... 123 0.00016 1
DICTYBASE|DDB_G0292324 - symbol:med28 "putative mediator ... 109 0.00018 1
>UNIPROTKB|F1MNZ6 [details] [associations]
symbol:MED28 "Mediator of RNA polymerase II transcription
subunit 28" species:9913 "Bos taurus" [GO:0051151 "negative
regulation of smooth muscle cell differentiation" evidence=IEA]
[GO:0030864 "cortical actin cytoskeleton" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] GO:GO:0005634 GO:GO:0030864 GO:GO:0051151
UniGene:Bt.29898 InterPro:IPR021640 Pfam:PF11594
GeneTree:ENSGT00390000006192 OMA:DQVIKED EMBL:DAAA02017022
IPI:IPI00999805 Ensembl:ENSBTAT00000025895 ArrayExpress:F1MNZ6
Uniprot:F1MNZ6
Length = 178
Score = 246 (91.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINMQHKKPA 154
Score = 195 (73.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
Score = 41 (19.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LAYLE+ ++NI P
Sbjct: 161 LAYLEQASANIPAP 174
>UNIPROTKB|Q2TBN4 [details] [associations]
symbol:MED28 "Mediator of RNA polymerase II transcription
subunit 28" species:9913 "Bos taurus" [GO:0016020 "membrane"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003779 "actin binding"
evidence=IEA] GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0006351 KO:K15141 EMBL:BC109886 IPI:IPI00720532
RefSeq:NP_001033627.1 UniGene:Bt.29898 STRING:Q2TBN4 GeneID:513972
KEGG:bta:513972 CTD:80306 eggNOG:NOG78801 HOGENOM:HOG000113540
HOVERGEN:HBG052448 InParanoid:Q2TBN4 OrthoDB:EOG4B5P6G
NextBio:20871121 InterPro:IPR021640 Pfam:PF11594 Uniprot:Q2TBN4
Length = 178
Score = 246 (91.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIKKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINMQHKKPA 154
Score = 195 (73.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIKKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
Score = 41 (19.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LAYLE+ ++NI P
Sbjct: 161 LAYLEQASANIPAP 174
>UNIPROTKB|E2RMT8 [details] [associations]
symbol:MED28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051151 "negative regulation of smooth muscle
cell differentiation" evidence=IEA] [GO:0030864 "cortical actin
cytoskeleton" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
GO:GO:0005634 GO:GO:0030864 GO:GO:0051151 KO:K15141 CTD:80306
InterPro:IPR021640 Pfam:PF11594 GeneTree:ENSGT00390000006192
OMA:DQVIKED EMBL:AAEX03002465 RefSeq:XP_850777.1 UniGene:Cfa.45396
Ensembl:ENSCAFT00000023941 GeneID:488813 KEGG:cfa:488813
NextBio:20862104 Uniprot:E2RMT8
Length = 175
Score = 246 (91.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 45 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 103
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 104 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPA 151
Score = 195 (73.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 66 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 119
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 120 QRKDALVQKHLTKLRHWQQVLEDI 143
Score = 41 (19.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LAYLE+ ++NI P
Sbjct: 158 LAYLEQASANIPAP 171
>UNIPROTKB|H0YAA8 [details] [associations]
symbol:MED28 "Mediator of RNA polymerase II transcription
subunit 28" species:9606 "Homo sapiens" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005634
InterPro:IPR021640 Pfam:PF11594 HGNC:HGNC:24628 ChiTaRS:MED28
OMA:DQVIKED EMBL:AC006160 Ensembl:ENST00000503945 Bgee:H0YAA8
Uniprot:H0YAA8
Length = 179
Score = 246 (91.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 45 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 103
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 104 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPA 151
Score = 195 (73.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 66 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 119
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 120 QRKDALVQKHLTKLRHWQQVLEDI 143
Score = 41 (19.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LAYLE+ ++NI P
Sbjct: 158 LAYLEQASANIPAP 171
>UNIPROTKB|Q9H204 [details] [associations]
symbol:MED28 "Mediator of RNA polymerase II transcription
subunit 28" species:9606 "Homo sapiens" [GO:0003779 "actin binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030864 "cortical actin cytoskeleton" evidence=IEA] [GO:0051151
"negative regulation of smooth muscle cell differentiation"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005634 GO:GO:0016020
GO:GO:0006355 GO:GO:0006351 GO:GO:0030864 GO:GO:0051151 KO:K15141
CTD:80306 eggNOG:NOG78801 HOGENOM:HOG000113540 HOVERGEN:HBG052448
OrthoDB:EOG4B5P6G InterPro:IPR021640 Pfam:PF11594 EMBL:AF321617
EMBL:AF358829 EMBL:AF318059 EMBL:AF317680 EMBL:BC011936
IPI:IPI00097532 RefSeq:NP_079481.2 UniGene:Hs.731966
ProteinModelPortal:Q9H204 IntAct:Q9H204 MINT:MINT-1434492
STRING:Q9H204 PhosphoSite:Q9H204 DMDM:59799838 PaxDb:Q9H204
PRIDE:Q9H204 DNASU:80306 Ensembl:ENST00000237380 GeneID:80306
KEGG:hsa:80306 UCSC:uc003gpi.1 GeneCards:GC04P017616
HGNC:HGNC:24628 HPA:HPA035900 MIM:610311 neXtProt:NX_Q9H204
PharmGKB:PA134935853 InParanoid:Q9H204 ChiTaRS:MED28
GenomeRNAi:80306 NextBio:70776 Bgee:Q9H204 CleanEx:HS_MED28
Genevestigator:Q9H204 GermOnline:ENSG00000118579 Uniprot:Q9H204
Length = 178
Score = 246 (91.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPA 154
Score = 195 (73.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
Score = 41 (19.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LAYLE+ ++NI P
Sbjct: 161 LAYLEQASANIPAP 174
>UNIPROTKB|I3LSW2 [details] [associations]
symbol:MED28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051151 "negative regulation of smooth muscle cell
differentiation" evidence=IEA] [GO:0030864 "cortical actin
cytoskeleton" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
GO:GO:0005634 GO:GO:0030864 GO:GO:0051151 KO:K15141 CTD:80306
InterPro:IPR021640 Pfam:PF11594 GeneTree:ENSGT00390000006192
OMA:DQVIKED EMBL:FP565315 RefSeq:NP_001230498.1 UniGene:Ssc.43467
Ensembl:ENSSSCT00000025116 GeneID:100627415 KEGG:ssc:100627415
Uniprot:I3LSW2
Length = 178
Score = 246 (91.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 107 PEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPA 154
Score = 195 (73.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
Score = 41 (19.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LAYLE+ ++NI P
Sbjct: 161 LAYLEQASANIPAP 174
>RGD|1305875 [details] [associations]
symbol:Med28 "mediator complex subunit 28" species:10116 "Rattus
norvegicus" [GO:0003779 "actin binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005856 "cytoskeleton" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA;ISO] [GO:0019827 "stem cell
maintenance" evidence=IEA;ISO] [GO:0030864 "cortical actin
cytoskeleton" evidence=IEA;ISO] [GO:0051151 "negative regulation of
smooth muscle cell differentiation" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] RGD:1305875 GO:GO:0005634 GO:GO:0016020
GO:GO:0006355 GO:GO:0006351 GO:GO:0030864 GO:GO:0051151 KO:K15141
CTD:80306 eggNOG:NOG78801 HOGENOM:HOG000113540 HOVERGEN:HBG052448
OrthoDB:EOG4B5P6G InterPro:IPR021640 Pfam:PF11594
GeneTree:ENSGT00390000006192 OMA:DQVIKED EMBL:AABR03090012
IPI:IPI00870314 RefSeq:NP_001100687.1 UniGene:Rn.34860
STRING:P68943 Ensembl:ENSRNOT00000004912 GeneID:305391
KEGG:rno:305391 InParanoid:P68943 NextBio:654471
Genevestigator:P68943 GermOnline:ENSRNOG00000003592 Uniprot:P68943
Length = 178
Score = 241 (89.9 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
P+ ++KED+ +LR +L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 107 PDQVIKEDVSELRSELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPA 154
Score = 190 (71.9 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR +L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRSEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
Score = 41 (19.5 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LAYLE+ ++NI P
Sbjct: 161 LAYLEQASANIPAP 174
>MGI|MGI:1914249 [details] [associations]
symbol:Med28 "mediator of RNA polymerase II transcription,
subunit 28 homolog (yeast)" species:10090 "Mus musculus"
[GO:0003779 "actin binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0030864 "cortical actin
cytoskeleton" evidence=IDA] [GO:0051151 "negative regulation of
smooth muscle cell differentiation" evidence=IMP] MGI:MGI:1914249
GO:GO:0005634 GO:GO:0005737 GO:GO:0016020 GO:GO:0006355
GO:GO:0005856 GO:GO:0006351 GO:GO:0030864 GO:GO:0051151
GO:GO:0019827 GO:GO:0016592 KO:K15141 CTD:80306 eggNOG:NOG78801
HOGENOM:HOG000113540 HOVERGEN:HBG052448 OrthoDB:EOG4B5P6G
InterPro:IPR021640 Pfam:PF11594 GeneTree:ENSGT00390000006192
EMBL:AF318060 EMBL:AK003854 EMBL:AK005681 EMBL:AK007855
EMBL:AK154249 EMBL:BC024941 IPI:IPI00471067 RefSeq:NP_080171.1
UniGene:Mm.283045 IntAct:Q920D3 MINT:MINT-217070 STRING:Q920D3
PhosphoSite:Q920D3 PaxDb:Q920D3 PRIDE:Q920D3
Ensembl:ENSMUST00000156481 GeneID:66999 KEGG:mmu:66999
UCSC:uc012dvz.1 InParanoid:Q920D3 OMA:DQVIKED NextBio:323270
Bgee:Q920D3 Genevestigator:Q920D3 GermOnline:ENSMUSG00000015804
Uniprot:Q920D3
Length = 178
Score = 241 (89.9 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L S ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LESSFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
P+ ++KED+ +LR +L RK+ L+++H K+ WQ +L D+ K PA
Sbjct: 107 PDQVIKEDVSELRSELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPA 154
Score = 190 (71.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KP+ ++KE D+ +LR +L
Sbjct: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKE------DVSELRSEL 122
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RK+ L+++H K+ WQ +L D+
Sbjct: 123 QRKDALVQKHLTKLRHWQQVLEDI 146
Score = 37 (18.1 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LA+LE+ ++NI P
Sbjct: 161 LAFLEQASANIPAP 174
>UNIPROTKB|E1C5V2 [details] [associations]
symbol:MED28 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016592 "mediator complex" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IEA] [GO:0030864 "cortical actin
cytoskeleton" evidence=IEA] [GO:0051151 "negative regulation of
smooth muscle cell differentiation" evidence=IEA] GO:GO:0005634
GO:GO:0030864 GO:GO:0051151 InterPro:IPR021640 Pfam:PF11594
GeneTree:ENSGT00390000006192 OMA:DQVIKED EMBL:AADN02015157
IPI:IPI00583339 Ensembl:ENSGALT00000011562 Uniprot:E1C5V2
Length = 178
Score = 234 (87.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 48/108 (44%), Positives = 68/108 (62%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T E + + +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 48 LEASFEACFASLVSQDYVNGT-EPAVLPVGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 106
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSPA 257
PE ++KED+ +LR++L RKE LI++H K+ WQ +L D+ K PA
Sbjct: 107 PEQVIKEDVSELRNELQRKEALIQKHLSKLRHWQQVLEDISVQHKKPA 154
Score = 186 (70.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 79 IDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK 138
+DQ KFLD+ARQ E FFLQKR LS KPE ++KE D+ +LR++L RKE LI+
Sbjct: 77 VDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVIKE------DVSELRNELQRKEALIQ 130
Query: 139 RHYDKIAVWQNLLSDL 154
+H K+ WQ +L D+
Sbjct: 131 KHLSKLRHWQQVLEDI 146
Score = 41 (19.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 398 LAYLEKTTSNIGLP 411
LAYLE+ ++NI P
Sbjct: 161 LAYLEQASANIPAP 174
>UNIPROTKB|Q294G7 [details] [associations]
symbol:MED28 "Mediator of RNA polymerase II transcription
subunit 28" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=ISS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0016592 "mediator
complex" evidence=ISS] EMBL:CM000070 GenomeReviews:CM000070_GR
GO:GO:0016592 GO:GO:0001104 KO:K15141 eggNOG:NOG78801
InterPro:IPR021640 Pfam:PF11594 OMA:LEEWKAC OrthoDB:EOG4S4MZQ
RefSeq:XP_001359845.1 GeneID:4803044 KEGG:dpo:Dpse_GA18674
FlyBase:FBgn0078674 InParanoid:Q294G7 Uniprot:Q294G7
Length = 190
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 49/96 (51%), Positives = 74/96 (77%)
Query: 155 QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIV 214
QSCL LTK++ S T K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++
Sbjct: 20 QSCLLSLTKQEPNSGT-NKEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLI 78
Query: 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 79 KDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 42/88 (47%), Positives = 64/88 (72%)
Query: 68 SPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLR 127
S K+EI+LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL
Sbjct: 33 SGTNKEEIELEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLS 86
Query: 128 HDLARKEELIKRHYDKIAVWQNLLSDLQ 155
++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 87 IEIQRKEALLQKHYNRLEEWKACLSDIQ 114
>FB|FBgn0039337 [details] [associations]
symbol:MED28 "Mediator complex subunit 28" species:7227
"Drosophila melanogaster" [GO:0016592 "mediator complex"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
EMBL:AE014297 GO:GO:0022008 GO:GO:0016592 GO:GO:0001104 KO:K15141
CTD:80306 eggNOG:NOG78801 InterPro:IPR021640 Pfam:PF11594
EMBL:AY118876 RefSeq:NP_651397.1 UniGene:Dm.13862 DIP:DIP-19819N
IntAct:Q9VBQ9 MINT:MINT-313331 STRING:Q9VBQ9 PRIDE:Q9VBQ9
EnsemblMetazoa:FBtr0084836 GeneID:43079 KEGG:dme:Dmel_CG5121
FlyBase:FBgn0039337 GeneTree:ENSGT00390000006192 InParanoid:Q9VBQ9
OMA:LEEWKAC OrthoDB:EOG4S4MZQ PhylomeDB:Q9VBQ9 GenomeRNAi:43079
NextBio:832102 Bgee:Q9VBQ9 GermOnline:CG5121 Uniprot:Q9VBQ9
Length = 189
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 49/96 (51%), Positives = 73/96 (76%)
Query: 155 QSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIV 214
QSCL LTK++ S T K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++
Sbjct: 20 QSCLLTLTKQEPNSGT-NKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLI 78
Query: 215 KEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
K++ DL ++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 79 KDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 42/88 (47%), Positives = 63/88 (71%)
Query: 68 SPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLR 127
S K+EI LE+ + T +F+D+ARQMEAFFLQKRFL+S LKP +++K+ N DL
Sbjct: 33 SGTNKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQ------DLS 86
Query: 128 HDLARKEELIKRHYDKIAVWQNLLSDLQ 155
++ RKE L+++HY+++ W+ LSD+Q
Sbjct: 87 IEIQRKEALLQKHYNRLEEWKACLSDIQ 114
>ZFIN|ZDB-GENE-041121-4 [details] [associations]
symbol:med28 "mediator complex subunit 28"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
ZFIN:ZDB-GENE-041121-4 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
KO:K15141 CTD:80306 eggNOG:NOG78801 HOGENOM:HOG000113540
HOVERGEN:HBG052448 OrthoDB:EOG4B5P6G InterPro:IPR021640
Pfam:PF11594 EMBL:BC085569 IPI:IPI00484938 RefSeq:NP_001007771.1
UniGene:Dr.78176 STRING:Q5RKN3 GeneID:493610 KEGG:dre:493610
InParanoid:Q5RKN3 NextBio:20865421 ArrayExpress:Q5RKN3
Uniprot:Q5RKN3
Length = 179
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 48/107 (44%), Positives = 68/107 (63%)
Query: 150 LLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALK 209
L + ++C L +D V+ T +++EI+ +DQ KFLD+ARQ E FFLQKR LS K
Sbjct: 49 LEASFEACFASLVSQDYVNGT-DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQK 107
Query: 210 PELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQGWAKSP 256
PE + KED +L+++L RKE LI++H KI WQ +L D+ K P
Sbjct: 108 PEQVEKEDASELKNELQRKEMLIQKHLAKIHHWQQVLEDINVQHKKP 154
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 40/84 (47%), Positives = 55/84 (65%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+++EI+ +DQ KFLD+ARQ E FFLQKR LS KPE + KE D +L+++L
Sbjct: 70 DQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVEKE------DASELKNEL 123
Query: 131 ARKEELIKRHYDKIAVWQNLLSDL 154
RKE LI++H KI WQ +L D+
Sbjct: 124 QRKEMLIQKHLAKIHHWQQVLEDI 147
>DICTYBASE|DDB_G0278545 [details] [associations]
symbol:fimC "fimbrin-3" species:44689 "Dictyostelium
discoideum" [GO:0051015 "actin filament binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001715 Pfam:PF00307
PROSITE:PS50021 SMART:SM00033 dictyBase:DDB_G0278545
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0051015
eggNOG:COG5069 Gene3D:1.10.418.10 SUPFAM:SSF47576
ProtClustDB:CLSZ2430748 RefSeq:XP_642432.1
ProteinModelPortal:Q54XX0 EnsemblProtists:DDB0232221 GeneID:8621638
KEGG:ddi:DDB_G0278545 InParanoid:Q54XX0 OMA:ICIISIN Uniprot:Q54XX0
Length = 1213
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 52/176 (29%), Positives = 96/176 (54%)
Query: 70 LEKD-EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRH 128
+EKD EIK++ Q K L + E+ ++K L+ K ELI ++ N DI++L +
Sbjct: 253 IEKDLEIKVKTKQLHEKD-QLILEFESSIIEKDQLIKE-KSELIQRQSN----DIIELEN 306
Query: 129 DLARKEELIKRHYDKIAVWQNLLSD----LQSCLQVLTKE----DEV-STTLEKDEI-KL 178
+ K++LI+ D I Q L+ D +Q ++++T + +E+ S T +KD+I K
Sbjct: 307 TSSTKDQLIREKDDLIKEKQQLIKDRDQTIQEKVEIITNQTTSINELQSVTNDKDKIIKE 366
Query: 179 EIDQATLKFLDLARQMEAFFLQK--RFLLSAL-KPELIV--KEDIVDLRHDLARKE 229
++D K L + R +E+ + K +F S + K ++I+ K++I +R DL+ +
Sbjct: 367 KLDSIEEK-LSIIRSLESSSINKVEQFESSIVEKDQIIIQLKKEIETIRFDLSNSK 421
Score = 119 (46.9 bits), Expect = 0.00045, P = 0.00044
Identities = 56/207 (27%), Positives = 101/207 (48%)
Query: 52 LEKTTSNIGLPDGRSLSPLEKD--EIKLEIDQATLKFLDLARQM-EAFFLQKRFL--LSA 106
+EK + + +S+ +K+ EIK E +K +DL + + L K +L +
Sbjct: 142 MEKQLQSFSIQQQKSIQDKDKEIFEIKSEFQ---VKIVDLETLLSDRLELIKEYLTRIEE 198
Query: 107 LKPELIVKEVNMVTKD--IVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKE 164
L ++V E KD I ++ + K+ +I +H + I +Q L+V KE
Sbjct: 199 LDQLVLVGEFKSNEKDKIIESIQQSINEKDFVIGKHVESI-------HSIQELLEV--KE 249
Query: 165 DEVSTTLEKD-EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKE--DIVDL 221
+++ +EKD EIK++ Q K L + E+ ++K L+ K ELI ++ DI++L
Sbjct: 250 NQL---IEKDLEIKVKTKQLHEKD-QLILEFESSIIEKDQLIKE-KSELIQRQSNDIIEL 304
Query: 222 RHDLARKEELIKRHYDKIAVWQNLLSD 248
+ + K++LI+ D I Q L+ D
Sbjct: 305 ENTSSTKDQLIREKDDLIKEKQQLIKD 331
>DICTYBASE|DDB_G0292324 [details] [associations]
symbol:med28 "putative mediator complex subunit 28"
species:44689 "Dictyostelium discoideum" [GO:0016592 "mediator
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IC] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IC] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0292324
GenomeReviews:CM000155_GR EMBL:AAFI02000189 GO:GO:0016592
GO:GO:0001104 KO:K15141 RefSeq:XP_629707.1
EnsemblProtists:DDB0266950 GeneID:8628621 KEGG:ddi:DDB_G0292324
OMA:EIENKDR Uniprot:Q54DD4
Length = 179
Score = 109 (43.4 bits), Expect = 0.00018, P = 0.00018
Identities = 29/110 (26%), Positives = 58/110 (52%)
Query: 134 EELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQ 193
E I D ++ L L+S + LTK D+ + DEI ID L +++
Sbjct: 13 ENPIDLENDPNILFTELNVKLESLITFLTKNDK-DNQIFVDEI---IDNKVTDLLIASKE 68
Query: 194 MEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQ 243
+E +F+ ++ SA K ++ +K++I ++ ++ K+ LI+R+ +K+ W+
Sbjct: 69 LENYFISQQSKYSAEKNKIQLKQEIYKVKKEIENKDRLIERYKNKVKEWK 118
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 415 240 0.00093 113 3 11 22 0.41 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 568 (60 KB)
Total size of DFA: 152 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 24.96u 0.08s 25.04t Elapsed: 00:00:24
Total cpu time: 24.96u 0.08s 25.04t Elapsed: 00:00:25
Start: Thu Aug 15 12:18:09 2013 End: Thu Aug 15 12:18:34 2013