RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10214
(415 letters)
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 64.5 bits (156), Expect = 3e-11
Identities = 22/134 (16%), Positives = 28/134 (20%), Gaps = 1/134 (0%)
Query: 257 AHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQ 316
+H T M P G + + M QQQ
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 317 QVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGG 376
Q+Q+H Q Q +M P P G
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN-AYMQPQVPVQMGTPLQQQQQPMAAPA 120
Query: 377 MGGPGNLGPGGMGP 390
G P M P
Sbjct: 121 YGQPSAAMGQNMRP 134
Score = 63.7 bits (154), Expect = 5e-11
Identities = 31/156 (19%), Positives = 39/156 (25%), Gaps = 3/156 (1%)
Query: 259 QGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQ-- 316
Q TP P A G G MG S Q P Q+Q
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Query: 317 QVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGG 376
Q Q M M + P + M + A PSA G
Sbjct: 71 QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130
Query: 377 MGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIGLPD 412
P N + L P+ L + +P
Sbjct: 131 NMRPMN-QLYPIDLLTELPPPITDLTLPPPPLVIPP 165
Score = 54.1 bits (129), Expect = 6e-08
Identities = 15/97 (15%), Positives = 20/97 (20%)
Query: 301 PGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRG 360
P + +Q QQ Q G PP G F+ P +
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 361 GGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGP 397
P M P +Q
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG 106
Score = 53.3 bits (127), Expect = 9e-08
Identities = 17/92 (18%), Positives = 24/92 (26%), Gaps = 2/92 (2%)
Query: 311 MPQQQQQV--QMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPP 368
M +++V Q Q Q Q PP P MG + G
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60
Query: 369 FPSAGPGGMGGPGNLGPGGMGPGGLLQGPLAY 400
F + + + M L PL
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Score = 52.9 bits (126), Expect = 1e-07
Identities = 16/124 (12%), Positives = 22/124 (17%), Gaps = 2/124 (1%)
Query: 250 QGWAKSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQP-- 307
G +P Q + P G + P Q
Sbjct: 16 YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQ 75
Query: 308 MSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPP 367
+ + +MQ Q G P G G N P
Sbjct: 76 ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPM 135
Query: 368 PFPS 371
Sbjct: 136 NQLY 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 1e-08
Identities = 41/270 (15%), Positives = 88/270 (32%), Gaps = 69/270 (25%)
Query: 43 GLLQGPLAYLEKTTSNIGLP-DGRSLSPLEKDEI--KLEIDQATLKFLD------LARQM 93
LL L YL+ + LP + + +P I + AT L +
Sbjct: 305 SLL---LKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 94 EAFF-------LQKRFLLSALKPE--LIVKEV------NMVTKDIVDLRHDLARKEELIK 138
E+ +K F ++ P I + +++ D++ + + L + L++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVE 418
Query: 139 RHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEK---------------DEIKLEIDQA 183
+ + + + + L++ K + L + D I +DQ
Sbjct: 419 KQPKESTIS---IPSIY--LELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 184 T-------LKFLDLARQMEAF---FLQKRFLLSALK---PELIVKEDIVDLRHDLARKEE 230
LK ++ +M F FL RFL ++ I++ L +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL----K 528
Query: 231 LIKRH-YDKIAVWQNLLSDLQGWAKSPAHQ 259
K + D ++ L++ + +
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Score = 53.7 bits (128), Expect = 7e-08
Identities = 49/323 (15%), Positives = 84/323 (26%), Gaps = 102/323 (31%)
Query: 27 GMGGPG---------------NLGPGG-----MG----PGGLLQGPLAYLEKTTSN-IGL 61
G+ G G + P +L+ L + N
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 62 PDGRSLSPLEKDEIKLEID--------QATLKFLD---LARQMEAFFLQKRFLL------ 104
D S L I+ E+ + L L A+ AF L + LL
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 105 --SALKPELIVKEVNMV------TKD--------IVDLR-HDLARKE------------E 135
L +++ T D +D R DL R+ E
Sbjct: 277 VTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 136 LIKRHYDKIAVWQNLLSD-----LQSCLQVLTKEDEVSTTLEK-----DEIKLEIDQATL 185
I+ W+++ D ++S L VL + E ++ I L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAH--IPTILL 392
Query: 186 KFL------DLARQMEAFFLQKRFLLSALKPELIVKEDI-VDLRHDLARKEELIKR---H 235
+ + + + K I I ++L+ L + L + H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 236 YDKIAVWQNLLSDLQGWAKSPAH 258
Y N+ P +
Sbjct: 453 Y-------NIPKTFDSDDLIPPY 468
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 49.3 bits (117), Expect = 6e-07
Identities = 31/145 (21%), Positives = 40/145 (27%), Gaps = 2/145 (1%)
Query: 255 SPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGST--MQPMSGMP 312
S +G +G GPGI G M G ++ + G
Sbjct: 79 SMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138
Query: 313 QQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSA 372
QQ Q + + G P P G MG G P G PP
Sbjct: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
Query: 373 GPGGMGGPGNLGPGGMGPGGLLQGP 397
MG P G P ++ P
Sbjct: 199 MGPPMGIPPGRGTPMGMPPPGMRPP 223
Score = 39.2 bits (91), Expect = 0.001
Identities = 27/117 (23%), Positives = 35/117 (29%), Gaps = 3/117 (2%)
Query: 270 PPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHM 329
P Q+ G++ + G + T+ + Q +
Sbjct: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG 174
Query: 330 QQQGMGPGGPPSGPGGPSSGM---MFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNL 383
MG G PP G GP GM M G P G G P P P G G L
Sbjct: 175 PPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231
Score = 37.3 bits (86), Expect = 0.005
Identities = 20/139 (14%), Positives = 30/139 (21%), Gaps = 4/139 (2%)
Query: 247 SDLQGWAKSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQ 306
G + + GP+ G+ G ++
Sbjct: 89 DTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
Query: 307 PMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGP 366
++ + P G + P G M PG G
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM----MGPPPGMRPPMGPPMG 204
Query: 367 PPFPSAGPGGMGGPGNLGP 385
P P GM PG P
Sbjct: 205 IPPGRGTPMGMPPPGMRPP 223
Score = 28.5 bits (63), Expect = 3.5
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 1 MMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPG 42
+ P G G PP A P GM GP MGP
Sbjct: 161 IAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 5e-06
Identities = 57/328 (17%), Positives = 111/328 (33%), Gaps = 99/328 (30%)
Query: 41 PG-GLLQGPLAYLEKTTSNIGLPDG------RSLSPLEKDEIKLEIDQATL--------K 85
P G++Q LA+ T +G G + + + + A
Sbjct: 239 PLIGVIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHSQG-----LVTAVAIAETDSWES 291
Query: 86 FLDLARQM--EAFFL----QKRFLLSALKPELIVKEVN--------MVTKDIVDLRHDLA 131
F R+ FF+ + + ++L P ++ + M++ I +L
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--ISNL--TQE 347
Query: 132 RKEELIKR---HYDK-----IAVW---QNL-LS----DLQSCLQVLTKEDEVSTTLEKDE 175
+ ++ + + H I++ +NL +S L ++ TL K +
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG----------LNLTLRKAK 397
Query: 176 IKLEIDQATLKFLDLARQMEAFFLQKRFL-LSA------LKPELIVKEDIVDLRHDLARK 228
+DQ+ + F + + F RFL +++ L P + I DL +
Sbjct: 398 APSGLDQSRIPF----SERKLKF-SNRFLPVASPFHSHLLVP---ASDLINK---DLVKN 446
Query: 229 EELIKRHYDKIAVWQNLL-SDLQGWAKSPAHQGSTSSASGTTP---PNSTPTQS------ 278
+I V+ SDL+ + S + P +T ++
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISE--RIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 279 GPGISAMGGPLPGMM--G-GMAPIVPGS 303
GPG ++ G L G G+ IV G+
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 56/183 (30%)
Query: 19 PFPSAGPGGMGGPGNLGPGGMGP----GGLLQGPL-AYLEKTTSNIGLPDGRSLS----- 68
P S P + G P L Q + Y+ KT N LP G+ +
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVN 372
Query: 69 ----------P---------LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFL-LSA-- 106
P L K + +DQ+ + F + + F RFL +++
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF----SERKLKF-SNRFLPVASPF 427
Query: 107 ----LKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLL-SDLQSCLQVL 161
L P + I DL + +I V+ SDL+ +
Sbjct: 428 HSHLLVP---------ASDLINK---DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 162 TKE 164
++
Sbjct: 476 SER 478
Score = 38.5 bits (89), Expect = 0.005
Identities = 50/275 (18%), Positives = 86/275 (31%), Gaps = 90/275 (32%)
Query: 63 DGRSLSP--LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKP----------- 109
D S P L ++ + T F +A Q LQ++F +P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFF-IASQ-----LQEQFNKILPEPTEGFAADDEPT 55
Query: 110 ---ELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKED- 165
EL+ K + V+ + E +D++ L++ ++ L D
Sbjct: 56 TPAELVGKFLGYVSSLV----------EPSKVGQFDQVL--NLCLTEFEN--CYLEGNDI 101
Query: 166 --EVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRF---LLSALK----------- 209
+ L++++ L + +K AR M K+ L A+
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 210 ---------PEL---------IVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQG 251
EL +V + I L ELI+ D V+ L ++
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL---SELIRTTLDAEKVFTQGL-NILE 217
Query: 252 WAKSPAHQGSTSSASGTTPPN----STPTQSGPGI 282
W ++P+ TP S P S P I
Sbjct: 218 WLENPS----------NTPDKDYLLSIPI-SCPLI 241
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 42.6 bits (100), Expect = 5e-05
Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 25/177 (14%)
Query: 85 KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKI 144
+F +AR + ++ + + V V ++ K + ++ + + +
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 145 AVWQNLL-------SDLQSCLQVL-TKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEA 196
++LL +++ LQ + ++ E++ E +L + +F A EA
Sbjct: 68 ---ESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEA 124
Query: 197 FFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYD---KIAVWQNLLSDLQ 250
+ + + L++ D H + E+LIKRH A W + L+
Sbjct: 125 WLIAQEPYLASG-----------DFGHTVDSVEKLIKRHEAFEKSTASWAERFAALE 170
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 42.6 bits (100), Expect = 8e-05
Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 43/189 (22%)
Query: 87 LDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH---YDK 143
+ ++ F R L+S + + + ++ D+ E L++RH +
Sbjct: 9 SHDSHDLQRFLSDFRDLMSWIN----GIRGLVSSDELAK---DVTGAEALLERHQEHRTE 61
Query: 144 IAVWQNLL------------------SDLQSCLQVL-TKEDEVSTTLEKDEIKLEIDQAT 184
I +++ L +L + ++ + + L+
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 185 LKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYD---KIAV 241
F Q E + + L+ D L E LIK+H D I V
Sbjct: 122 QLFHRDCEQAENWMAAREAFLNT-----------EDKGDSLDSVEALIKKHEDFDKAINV 170
Query: 242 WQNLLSDLQ 250
+ ++ LQ
Sbjct: 171 QEEKIAALQ 179
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 42.6 bits (100), Expect = 9e-05
Identities = 22/178 (12%), Positives = 53/178 (29%), Gaps = 36/178 (20%)
Query: 85 KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKR----- 139
FL +A+ + +++ + E + + ++ ++ ++ +R
Sbjct: 4 AFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESG 63
Query: 140 -------HYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLAR 192
+ + L L T D + E L +F A+
Sbjct: 64 EKVIQGQTDPEYLLLGQRLEGLD------TGWDALGRMWESRSHTLAQCLGFQEFQKDAK 117
Query: 193 QMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQ 250
Q EA + + L+ L + L E I++ ++ L ++
Sbjct: 118 QAEAILSNQEYTLAHL-----------EPPDSLEAAEAGIRKF-------EDFLGSME 157
Score = 31.4 bits (71), Expect = 0.42
Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 24/129 (18%)
Query: 70 LEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHD 129
E L +F A+Q EA + + L+ L +
Sbjct: 96 WESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHL-----------------EPPDS 138
Query: 130 LARKEELIKRHYD---KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLK 186
L E I++ D + ++ + L E + D+IK ++ +
Sbjct: 139 LEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNL----YSDKIKEKVQLIEDR 194
Query: 187 FLDLARQME 195
+ +
Sbjct: 195 HRKNNEKAQ 203
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 42.8 bits (100), Expect = 9e-05
Identities = 19/74 (25%), Positives = 23/74 (31%)
Query: 318 VQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGM 377
V + + + Q G +G G G FP A PGG
Sbjct: 144 VTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGD 203
Query: 378 GGPGNLGPGGMGPG 391
PG GPGG P
Sbjct: 204 RFPGPAGPGGPPPP 217
Score = 39.7 bits (92), Expect = 8e-04
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 312 PQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPS 371
Q Q +MQ + Q Q G G GPP GG S G G A P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPP---GGSSRAAFPQGGRGRGRFPGAVPGGDRF 205
Query: 372 AGPGGMGGPGNLGPGGMGP 390
GP G GGP P G
Sbjct: 206 PGPAGPGGPPPPFPAGQTH 224
Score = 33.2 bits (75), Expect = 0.11
Identities = 15/38 (39%), Positives = 15/38 (39%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPG 42
G G FP A PGG PG GPGG P
Sbjct: 180 SSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPP 217
Score = 30.8 bits (69), Expect = 0.67
Identities = 15/59 (25%), Positives = 15/59 (25%)
Query: 339 PPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGP 397
G G G AGPP S GG G G PGG
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207
Score = 30.1 bits (67), Expect = 1.2
Identities = 15/44 (34%), Positives = 15/44 (34%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGP 48
G G G AGPP S GG G G PGG
Sbjct: 164 QSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207
Score = 28.9 bits (64), Expect = 2.4
Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 306 QPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAG 365
SG + + Q G G G P G GPGGP
Sbjct: 162 TTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGP------- 214
Query: 366 PPPFPSA 372
PPPFP+
Sbjct: 215 PPPFPAG 221
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 41.8 bits (97), Expect = 3e-04
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 300 VPGSTMQPMSGMP----QQQQQVQMQQQIHMQHMQQQGM---GPGGPPSGPGGPSSGMMF 352
+P M+P+ + + Q Q + + M Q M PGG GG +S
Sbjct: 202 LPLIKMKPVPDLVPGNFKSQLQKVPPEWKALTDMPQMRMELERPGGNEITRGGSTSYGTG 261
Query: 353 MGPGGPRGGGNAGPPPFPSAGPG--GMGGPGNLGPGGMGPGG 392
PR +AG S+GPG G PG+ G GG
Sbjct: 262 SETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWK 303
Score = 37.9 bits (87), Expect = 0.006
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 335 GPGGPPSG-PGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMG--GPGNLGPGGMGPG 391
GPG + PG +G G G G+ G S+G G G PG+ PG G
Sbjct: 282 GPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTW 341
Query: 392 G 392
Sbjct: 342 N 342
Score = 36.4 bits (83), Expect = 0.018
Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 332 QGMGPGGPPSGPGGPSSGMMFMGPG----GPRGGGNAGPPPFPSAGPGGMG--GPGNLGP 385
G G G + + G PG G G N+G S G G PG+ G
Sbjct: 281 SGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGT 340
Query: 386 GGMGPGG 392
G
Sbjct: 341 WNPGSSE 347
Score = 35.2 bits (80), Expect = 0.038
Identities = 27/145 (18%), Positives = 34/145 (23%), Gaps = 16/145 (11%)
Query: 255 SPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQ 314
+ SSA +S P +G G PGST SG
Sbjct: 263 ETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSG---- 318
Query: 315 QQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGP-SSGMMFMGPGGPRGGGNAGPPPFPS-A 372
PG P G G + G G G ++
Sbjct: 319 ----------SSGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWH 368
Query: 373 GPGGMGGPGNLGPGGMGPGGLLQGP 397
G P + G G P G
Sbjct: 369 SESGSFRPDSPGSGNARPNNPDWGT 393
Score = 33.3 bits (75), Expect = 0.16
Identities = 29/148 (19%), Positives = 36/148 (24%), Gaps = 35/148 (23%)
Query: 255 SPAHQGSTSSASGTTPPNST---------PTQSGPGISAMGGPLPGMMGGMAPIVPGSTM 305
GSTS +G+ + SGPG + P GG A PGS+
Sbjct: 249 EITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSG 308
Query: 306 QPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAG 365
G G + PG G N G
Sbjct: 309 PG-----------------------STGSWNSGSSGTGSTGNQNPGSPRPGST-GTWNPG 344
Query: 366 PPPFPSAGPG--GMGGPGNLGPGGMGPG 391
SAG G+ G G
Sbjct: 345 SSERGSAGHWTSESSVSGSTGQWHSESG 372
Score = 31.8 bits (71), Expect = 0.48
Identities = 13/60 (21%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 335 GPGGP-PSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPG-GMGGPGNLGPGGMGPGG 392
G P S G G G ++ F PG G P N G
Sbjct: 339 GTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNARPNNPDWGTFEEVS 398
Score = 30.6 bits (68), Expect = 1.1
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 5 GPGGPRGGGNAGPPP--FPSAGPGGMGGPGNLGPGGMGPGG 43
G G++GP ++G G G GN PG PG
Sbjct: 297 GGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGS 337
Score = 30.2 bits (67), Expect = 1.3
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPGGMG--GPGNLGPGGMGPGG 43
G G G+ G S+G G G PG+ PG G
Sbjct: 302 WKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWN 342
Score = 29.5 bits (65), Expect = 2.4
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPGGMG--GPGNLGPGGMGPGG 43
G G N+G S G G PG+ G G
Sbjct: 307 SGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSE 347
Score = 29.5 bits (65), Expect = 2.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPGGMG--GPGNLGPGGMGPGG 43
G G G+ G S+G GG PG+ GPG G
Sbjct: 276 WNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWN 316
Score = 29.1 bits (64), Expect = 3.6
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 5 GPGGPRGGGNAGPPPFPS-AGPGGMGGPGNLGPGGMGPGGLLQGP 48
G G ++ G P + G G P G
Sbjct: 349 GSAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNARPNNPDWGT 393
Score = 28.3 bits (62), Expect = 5.0
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPG--GMGGPGNLGPGGMGPGG 43
G G G++G + PG G G PG G
Sbjct: 310 GSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERGS 350
Score = 27.9 bits (61), Expect = 6.6
Identities = 12/39 (30%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGG 43
G G G+ G S PG G N G G G
Sbjct: 315 WNSGSSGTGSTGNQNPGSPRPGS-TGTWNPGSSERGSAG 352
Score = 27.5 bits (60), Expect = 9.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPG--GMGGPGNLGPGGMGPGG 43
G G++GP + PG G GG PG GPG
Sbjct: 271 SSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGS 311
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 40.6 bits (95), Expect = 6e-04
Identities = 29/224 (12%), Positives = 75/224 (33%), Gaps = 48/224 (21%)
Query: 66 SLSPLEKDEIKLEIDQATLKFLDLA-------RQMEAFFLQKRFL--LSALKPELIVKEV 116
+ S + ++K + + +F + ++ +F + + + K++
Sbjct: 71 TSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKL 130
Query: 117 NMVTKDIVDLRHDLARKEELIKRH---YDKIAVWQNLLSDLQSCLQVL------------ 161
+ ++D DL + L K+H ++A + + + + L
Sbjct: 131 LVSSEDYG---RDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQ 187
Query: 162 -------TKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIV 214
E+ +LE +F+ + EA+ +K L+++
Sbjct: 188 QRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVAS------- 240
Query: 215 KEDIVDLRHDLARKEELIKRH---YDKIAVWQNLLSDLQGWAKS 255
D LA + L+K+H V ++ ++D+ +
Sbjct: 241 ----EDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGED 280
Score = 36.8 bits (85), Expect = 0.009
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 125 DLRHDLARKEELIKRHYD---KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEID 181
D DLA L+K+H I+ ++ L DL S L + ++K + +
Sbjct: 30 DYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSA----FDTSQVKDKRE 85
Query: 182 QATLKFLDLA-------RQMEAFFLQKRFL--LSALKPELIVKEDIV---DLRHDLARKE 229
+F + ++ +F + + + K+ +V D DL +
Sbjct: 86 TINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQ 145
Query: 230 ELIKRHYDKIAVWQNLLSDLQG 251
L K+H + L ++L
Sbjct: 146 NLRKKH-------KRLEAELAA 160
Score = 34.1 bits (78), Expect = 0.061
Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 74 EIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARK 133
+LE +F+ + EA+ +K L+++ D LA
Sbjct: 208 GQRLEESLEYQQFVANVEEEEAWINEKMTLVAS-----------------EDYGDTLAAI 250
Query: 134 EELIKRH---YDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDL 190
+ L+K+H V ++ ++D+ + + L K++ + I ++ K DL
Sbjct: 251 QGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNH----HVENITAKMKGLKGKVSDL 306
Query: 191 ARQMEA 196
+
Sbjct: 307 EKAAAQ 312
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 40.7 bits (96), Expect = 6e-04
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 309 SGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPP 368
SG+ + Q + Q M ++ G G G + + P
Sbjct: 410 SGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPR 469
Query: 369 FPSAGPGGMGGPGNL--GPGGMGPGGLLQGP 397
GGM G ++ G +
Sbjct: 470 VL-HHMGGMAGLQSMMRQFQQGAAGNMKGMM 499
Score = 37.6 bits (88), Expect = 0.006
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 285 MGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPG 344
M ++ Q M+ M + M +Q M +Q G + G
Sbjct: 439 GLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQ-FQQGAAGNMKG 497
Query: 345 GPSSGMM 351
M
Sbjct: 498 MMGFNNM 504
Score = 35.7 bits (83), Expect = 0.025
Identities = 20/92 (21%), Positives = 25/92 (27%), Gaps = 17/92 (18%)
Query: 292 MMGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMM 351
M+ M I MS Q Q ++ QQ M M + G G S M
Sbjct: 430 MVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQ--MAKMMDPRVLHHMG--GMAGLQSMMR 485
Query: 352 FMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNL 383
G GM G N+
Sbjct: 486 QFQQGAA-------------GNMKGMMGFNNM 504
Score = 31.4 bits (72), Expect = 0.55
Identities = 15/93 (16%), Positives = 22/93 (23%), Gaps = 16/93 (17%)
Query: 292 MMGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMM 351
M M + G+ + + Q M + QQ P +
Sbjct: 426 KFAQMV-----KKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP----------RV 470
Query: 352 FMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLG 384
GG G + F G M G
Sbjct: 471 LHHMGGM-AGLQSMMRQFQQGAAGNMKGMMGFN 502
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 40.6 bits (94), Expect = 7e-04
Identities = 25/138 (18%), Positives = 34/138 (24%), Gaps = 1/138 (0%)
Query: 255 SPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQ 314
H S + GT +P + G P G PG +G
Sbjct: 250 GDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNP 309
Query: 315 QQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGP-PPFPSAG 373
+ + G P P S+G G P G S+
Sbjct: 310 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSF 369
Query: 374 PGGMGGPGNLGPGGMGPG 391
G GN+ P G
Sbjct: 370 RPDSSGHGNIRPSSPDWG 387
Score = 37.5 bits (86), Expect = 0.007
Identities = 22/107 (20%), Positives = 28/107 (26%), Gaps = 7/107 (6%)
Query: 293 MGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMF 352
M + VP + P + + + QQ M G G S G
Sbjct: 210 MSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGS 269
Query: 353 MGPGGPRGGGNAGPPPFPSAGPGGM-------GGPGNLGPGGMGPGG 392
G GN P + G G G PG PG
Sbjct: 270 PRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGS 316
Score = 36.0 bits (82), Expect = 0.018
Identities = 22/152 (14%), Positives = 32/152 (21%), Gaps = 12/152 (7%)
Query: 253 AKSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMG-GMAPIVPGSTMQPMSGM 311
+T P + + ++ +V +
Sbjct: 196 LLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHAR 255
Query: 312 PQQQQQVQMQQQIHMQHMQQQGMGPGGP---------PSGPGGPSSGMMFMGPGGPRGGG 362
Q + +G P PG P G G G
Sbjct: 256 GDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPG 315
Query: 363 NAGPPP--FPSAGPGGMGGPGNLGPGGMGPGG 392
+AG P G G PG PG G
Sbjct: 316 SAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 347
Score = 32.5 bits (73), Expect = 0.22
Identities = 24/139 (17%), Positives = 33/139 (23%), Gaps = 15/139 (10%)
Query: 254 KSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQ 313
+ GS ++ N P GPG S P G PG +G
Sbjct: 262 GTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 321
Query: 314 QQQQVQMQQQIHMQHMQQQG----MGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPF 369
+ + G PG P G G G +
Sbjct: 322 PGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS-----------AGTWNTGSSGSSSFR 370
Query: 370 PSAGPGGMGGPGNLGPGGM 388
P + G P + G
Sbjct: 371 PDSSGHGNIRPSSPDWGTF 389
Score = 32.5 bits (73), Expect = 0.27
Identities = 13/68 (19%), Positives = 17/68 (25%)
Query: 330 QQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMG 389
Q P + + M+ GG PG PG G +
Sbjct: 223 SQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVN 282
Query: 390 PGGLLQGP 397
PG G
Sbjct: 283 PGSYGPGS 290
Score = 28.7 bits (63), Expect = 4.2
Identities = 11/48 (22%), Positives = 13/48 (27%)
Query: 1 MMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGP 48
M+ GG PG PG G + PG G
Sbjct: 243 MVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGS 290
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 39.5 bits (92), Expect = 0.001
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 40/150 (26%)
Query: 125 DLRHDLARKEELIKRH---YDKIAVWQNLLSDLQSCLQVLTKE----------------- 164
D DLA L+K+H I+ ++ L DL S L
Sbjct: 30 DYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETING 89
Query: 165 --DEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLR 222
+ + KL +F E++ +K+ L+S+ D
Sbjct: 90 RFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSE-----------DYG 138
Query: 223 HDLARKEELIKRHYDKIAVWQNLLSDLQGW 252
DL + L K+H + L ++L
Sbjct: 139 RDLTGVQNLRKKH-------KRLEAELAAH 161
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 37.4 bits (86), Expect = 0.005
Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)
Query: 85 KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIK------ 138
F+ A + + +K + + L +L KE+ IK
Sbjct: 12 SFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAG 71
Query: 139 ------RHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLAR 192
H + V ++ + LQ+ + + E L+ + A +F R
Sbjct: 72 DRLLREDHPARPTV-ESFQAALQTQWSWMLQL------CCCIEAHLKENAAYFQFFSDVR 124
Query: 193 QMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLARKEELIKRH---YDKIAVWQNLLSDL 249
+ E + + E + ++ D + R E+L++ +++ ++ LS L
Sbjct: 125 EAEGQLQKLQ--------EALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGL 176
Query: 250 Q 250
Sbjct: 177 A 177
Score = 29.6 bits (66), Expect = 1.8
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 87 LDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH---YDK 143
L FF R L+ + + K D + R E+L++ ++
Sbjct: 110 LKENAAYFQFFSDVREAEGQLQ----KLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQ 165
Query: 144 IAVWQNLLSDLQSCLQVLTK 163
+ ++ LS L + + +
Sbjct: 166 LNEYKGHLSGLAKRAKAVVQ 185
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 36.7 bits (84), Expect = 0.007
Identities = 25/112 (22%), Positives = 28/112 (25%), Gaps = 1/112 (0%)
Query: 286 GGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGG 345
G G G+ P G Q Q H Q G G P G G
Sbjct: 11 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGW 70
Query: 346 PSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGP 397
G G G P P + G G G GG + G
Sbjct: 71 GQPHGGG-GWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGS 121
Score = 35.6 bits (81), Expect = 0.016
Identities = 22/88 (25%), Positives = 27/88 (30%)
Query: 310 GMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPF 369
G ++ + ++ Q G P GG G G P GGG P
Sbjct: 1 GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 60
Query: 370 PSAGPGGMGGPGNLGPGGMGPGGLLQGP 397
P G G G GG G GG
Sbjct: 61 GWGQPHGGGWGQPHGGGGWGQGGTHGQW 88
Score = 29.0 bits (64), Expect = 2.4
Identities = 25/141 (17%), Positives = 32/141 (22%), Gaps = 10/141 (7%)
Query: 251 GWAKSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSG 310
G K P G ++ P +P + GG GG G QP G
Sbjct: 1 GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 60
Query: 311 MPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFP 370
Q Q G GG G + A
Sbjct: 61 GWGQPHGGGWGQP----------HGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAV 110
Query: 371 SAGPGGMGGPGNLGPGGMGPG 391
G GG + + G
Sbjct: 111 VGGLGGYMLGSAMSRPLIHFG 131
Score = 28.7 bits (63), Expect = 3.0
Identities = 22/113 (19%), Positives = 24/113 (21%), Gaps = 2/113 (1%)
Query: 297 APIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPG 356
P G S P Q + Q G GG P G G G
Sbjct: 5 RPKPGGGWNTGGSRYPGQGSPGGNRYP--PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGW 62
Query: 357 GPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGPLAYLEKTTSNIG 409
G GG G P G P A +G
Sbjct: 63 GQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLG 115
Score = 27.9 bits (61), Expect = 5.5
Identities = 16/44 (36%), Positives = 16/44 (36%)
Query: 5 GPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGP 48
G G P GGG P P G G G GG G GG
Sbjct: 45 GWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQW 88
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 37.3 bits (86), Expect = 0.008
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 313 QQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSA 372
++++ Q + + + Q Q M GP + P G A P P
Sbjct: 568 LRKEEEQATETQPIVYGQPQLMLTAGPSVA-------VPPQAPFGYGYTAPAYGQPQPGF 620
Query: 373 GPG 375
G
Sbjct: 621 GYS 623
Score = 35.3 bits (81), Expect = 0.039
Identities = 10/85 (11%), Positives = 19/85 (22%), Gaps = 10/85 (11%)
Query: 311 MP----QQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGP 366
MP ++ + ++ ++ +M G +
Sbjct: 545 MPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQPIVYGQPQLMLTA------GPSVAV 598
Query: 367 PPFPSAGPGGMGGPGNLGPGGMGPG 391
PP G G G G
Sbjct: 599 PPQAPFGYGYTAPAYGQPQPGFGYS 623
Score = 33.8 bits (77), Expect = 0.11
Identities = 7/42 (16%), Positives = 9/42 (21%)
Query: 1 MMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPG 42
+ G + PP G G G G
Sbjct: 582 VYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYS 623
Score = 30.7 bits (69), Expect = 0.93
Identities = 9/39 (23%), Positives = 11/39 (28%)
Query: 4 MGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPG 42
+ G P+ AGP G G PG
Sbjct: 581 IVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPG 619
Score = 29.2 bits (65), Expect = 3.1
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 259 QGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGM 296
Q ++ P P G A G P PG M
Sbjct: 587 QLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYSM 624
Score = 29.2 bits (65), Expect = 3.4
Identities = 8/48 (16%), Positives = 10/48 (20%)
Query: 273 STPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQQQQVQM 320
+T TQ G + P P Q Q
Sbjct: 575 ATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGY 622
Score = 28.4 bits (63), Expect = 5.8
Identities = 5/42 (11%), Positives = 8/42 (19%)
Query: 271 PNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMP 312
P + +P + QP G
Sbjct: 580 PIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFG 621
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 36.6 bits (84), Expect = 0.010
Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 9/134 (6%)
Query: 71 EKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
EK +KL++ + D ++ + +QK+ + +E+ + + +
Sbjct: 54 EKLALKLQVSKNEQTLQDTNAKIAS--IQKK-----MSEIKSERELRSLNIEEDIAKERS 106
Query: 131 ARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDL 190
+ I+ ++I DL+ + L ++ + + I + T + +
Sbjct: 107 NQANREIENLQNEIKRKSEKQEDLKKEMLEL-EKLALELESLVENEVKNIKE-TQQIIFK 164
Query: 191 ARQMEAFFLQKRFL 204
++ + +
Sbjct: 165 KKEDLVEKTEPKIY 178
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 33.7 bits (77), Expect = 0.028
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 103 LLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQ--- 159
LL + + E KE+ + ++ L+ L + E K +K+ +DLQ +Q
Sbjct: 5 LLKSAERE---KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQ 61
Query: 160 -VLTKEDEVSTTLEKDEIKLE--IDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKE 216
L +E L K++I+LE + + + D +KR L EL K
Sbjct: 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECS-EL--KR 118
Query: 217 DIVDLRHDLAR 227
DI DL LA+
Sbjct: 119 DIDDLELTLAK 129
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 35.1 bits (80), Expect = 0.051
Identities = 23/163 (14%), Positives = 30/163 (18%), Gaps = 34/163 (20%)
Query: 255 SPAHQGSTSSASGTTPPNSTPTQSGPGIS-----AMGGPLPGMMGGMAPIVPGS-TMQPM 308
SP ++ A G S PG P S T P
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPT 1552
Query: 309 SGM-----------------------PQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPG- 344
S P P P+ P
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1612
Query: 345 GPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGG 387
P+S P P + P + P + P
Sbjct: 1613 SPTSPSYS--PTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTS 1651
Score = 28.9 bits (64), Expect = 3.7
Identities = 23/142 (16%), Positives = 37/142 (26%), Gaps = 17/142 (11%)
Query: 255 SPAHQGSTSSASGTTP---PNSTP-TQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSG 310
SPA+ ++ S S T+P P S + + P S +P P + S
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1612
Query: 311 MPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRG-----GGNAG 365
P P P+ P + + P P +
Sbjct: 1613 SPTSPSYSPTS-------PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPT 1664
Query: 366 PPPFPSAGPGGMGGPGNLGPGG 387
P + P + P
Sbjct: 1665 SPSYSPTSPSYSPTSPSYSPTS 1686
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 34.7 bits (79), Expect = 0.057
Identities = 12/89 (13%), Positives = 19/89 (21%), Gaps = 4/89 (4%)
Query: 306 QPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAG 365
S + + + + PP P+ P P G
Sbjct: 8 HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPP----PPPAPAAGNPPD 63
Query: 366 PPPFPSAGPGGMGGPGNLGPGGMGPGGLL 394
S + GP G + P
Sbjct: 64 TVTGDSVLQRILRGPTGPGTTSLAPAVRY 92
Score = 34.3 bits (78), Expect = 0.061
Identities = 23/137 (16%), Positives = 29/137 (21%), Gaps = 29/137 (21%)
Query: 254 KSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQ 313
S H +S P+ S ++ +A + P T P P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAAS---------DFLAALHPPVT-VPDPAPPP 52
Query: 314 QQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAG 373
G PP G S GP G G P G
Sbjct: 53 PPAP-----------------AAGNPPDTVTGDSVLQRI--LRGPTGPGTTSLAPAVRYG 93
Query: 374 PGGMGGPGNLGPGGMGP 390
P G
Sbjct: 94 RQPGPEAPASAPPAAGR 110
Score = 30.9 bits (69), Expect = 0.81
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 335 GPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLL 394
G S+ F+ P P P G P + G +L
Sbjct: 18 GSHMVIPSASVTSAASDFLAALHPPVT--VPDPAPPPPPAPAAGNPPDTVTGDSVLQRIL 75
Query: 395 QGP 397
+GP
Sbjct: 76 RGP 78
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 33.8 bits (77), Expect = 0.065
Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 125 DLRHDLARKEELIKRH---YDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEID 181
+ DL E + H + I ++ + +S L+ +L++
Sbjct: 32 EWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPAT--RGAYRDCLGRLDLQ 89
Query: 182 QATLKFLDLARQMEAFFLQKRFLLSALKPE--LIVKEDIV---DLRHDLARKEELIKRHY 236
A L AR L F+ +A K L KE+ D + +
Sbjct: 90 YAKLLNSSKARLRSLESLHS-FVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESY- 147
Query: 237 DKIAVWQNLLSDLQGWAKS 255
L+ +L+ K
Sbjct: 148 ------SALMRELELKEKK 160
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 33.7 bits (76), Expect = 0.12
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 19/166 (11%)
Query: 89 LARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRH---YDKIA 145
+ R L ++F A E + L L+++H +A
Sbjct: 123 IRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 182
Query: 146 VWQNLLSDLQSCLQVLTKE-----DEVSTTLEK-----DEIKLEID---QATLKFLDLAR 192
Q+ + + + Q L + V+ +K D + +A + L
Sbjct: 183 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 242
Query: 193 QMEAFFLQKRFLLSALKPELIVKEDIV---DLRHDLARKEELIKRH 235
++ L+ + + + + + H + + LI H
Sbjct: 243 TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAH 288
>2bbz_A Viral CAsp8 and FADD-like apoptosis regulator; death effector
domain, viral protein; 3.80A {Molluscum contagiosum
virus subtype 1}
Length = 249
Score = 32.8 bits (74), Expect = 0.17
Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 52/261 (19%)
Query: 80 DQATLKFL--DLARQMEAFF-----LQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132
+ + L FL D A L ++ L+ + E+ V + R DL +
Sbjct: 24 EDSLLLFLCHDAAPGCTTVTQALCSLSQQRKLTLA----ALVEMLYVLQ-----RMDLLK 74
Query: 133 KEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFL---D 189
+ + + + + L+ + + V L+ E++ L+
Sbjct: 75 SRFGLSKEGAEQLLGTSFLTRYRKLMV------CVGEELDSSELR------ALRLFACNL 122
Query: 190 LARQMEAFFLQKRFL--LSALKPELIVKEDIVDLRHDLARKEELIKRHYDKIAVWQNLLS 247
A RF+ + AL+ +V V + D+ R ++R +L
Sbjct: 123 NPSLSTALSESSRFVELVLALENVGLVSPSSVSVLADMLRT---LRR--------LDLCQ 171
Query: 248 DLQGWAKSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQP 307
L + + + A+ S P ++ M P+ S
Sbjct: 172 QLVEYEQQEQARYRYCYAA----SPSLPVRTLRRGHGASEHEQLCM----PVQESSDSPE 223
Query: 308 MSGMPQQQQQVQMQQQIHMQH 328
+ P Q+ +Q ++H
Sbjct: 224 LLRTPVQESSSDSPEQTTLEH 244
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 32.2 bits (73), Expect = 0.32
Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 297 APIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPG 356
P S P + Q ++ + M Q++ Q G PP G
Sbjct: 354 IPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY------------- 400
Query: 357 GPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQG 396
P+G G PP G P P G P QG
Sbjct: 401 PPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG 440
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.40
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 24/50 (48%)
Query: 172 EKDEI-KLEIDQATLKFL--DLARQMEAFFLQKRFLLSALKPELIVKEDI 218
EK + KL+ A+LK D SA P L +K +
Sbjct: 18 EKQALKKLQ---ASLKLYADD----------------SA--PALAIKATM 46
Score = 29.5 bits (65), Expect = 1.2
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 24/47 (51%)
Query: 71 EKDEI-KLEIDQATLKFL--DLARQMEAFFLQKRFLLSALKPELIVK 114
EK + KL+ A+LK D SA P L +K
Sbjct: 18 EKQALKKLQ---ASLKLYADD----------------SA--PALAIK 43
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation,
ribosome inhibitor, hydrolase; HET: CIT; 2.30A
{Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1
PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Length = 551
Score = 31.9 bits (71), Expect = 0.48
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 333 GMGPGGPPSGPGGPSSGMMFMG---PGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMG 389
G+G GG S G SS G G GG +G G G G +
Sbjct: 26 GLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85
Query: 390 P 390
Sbjct: 86 A 86
Score = 31.1 bits (69), Expect = 0.65
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 333 GMGPGGPPSGPGG--PSSGMMFMGPGGPRGGGNAGPPP-FPSAGPGGMGGPGNLGPGGMG 389
G GGP G S G + P GGG+ +G G GG GN G G
Sbjct: 18 GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77
Query: 390 PGGL 393
G L
Sbjct: 78 GGNL 81
Score = 28.8 bits (63), Expect = 4.3
Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 335 GPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPS-----AGPGGMGGPGNLGPGGMG 389
G G + +SG + GP G GG A S G G G G G G
Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63
Query: 390 PGG 392
GG
Sbjct: 64 NGG 66
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 31.6 bits (70), Expect = 0.58
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 293 MGGMAPIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGM 334
+ T + + + QQ Q QQ M Q +
Sbjct: 575 QLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLL 616
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 29.6 bits (66), Expect = 0.69
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 313 QQQQQVQMQQQIHMQHM-QQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGP 366
QQ++++ + + Q G PGG P G G G P GG ++GP
Sbjct: 61 HQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPG--------GGAPPSGGASSGP 107
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 31.1 bits (70), Expect = 0.73
Identities = 14/120 (11%), Positives = 23/120 (19%), Gaps = 35/120 (29%)
Query: 255 SPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQ 314
SP G ++ +TP G + G P P
Sbjct: 7 SPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNK-------------------- 46
Query: 315 QQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGP 374
+ + P P ++G + F P
Sbjct: 47 ---------------KPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPP 91
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 30.8 bits (69), Expect = 0.83
Identities = 15/82 (18%), Positives = 19/82 (23%), Gaps = 7/82 (8%)
Query: 316 QQVQMQQQIHMQHMQQQGMGPGGPPSGPG-------GPSSGMMFMGPGGPRGGGNAGPPP 368
+ Q P+G G PS G PG + P
Sbjct: 3 HHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSP 62
Query: 369 FPSAGPGGMGGPGNLGPGGMGP 390
GP +GP M
Sbjct: 63 INGMGPPFSVISSPMGPHSMSV 84
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 30.4 bits (67), Expect = 1.5
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 306 QPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAG 365
QP + M Q + + I + + P P M + P NA
Sbjct: 7 QPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLV----PSELSNAS 62
Query: 366 PP 367
P
Sbjct: 63 PD 64
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 28.7 bits (65), Expect = 1.5
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 164 EDEVS--TTLEKD--EIKLEIDQATLKFLDLARQMEA-----FFLQK 201
++E+ E + ++D A+L LDL R++E+ FL+K
Sbjct: 58 QEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_7
Length = 162
Score = 28.9 bits (64), Expect = 1.7
Identities = 9/70 (12%), Positives = 9/70 (12%), Gaps = 1/70 (1%)
Query: 328 HMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGG 387
P G G R G N G G
Sbjct: 92 FKASNVNFISKEEDEEERPRRQFNKGGRTGERDGRNKRGVG-RGTRREGEEAAKEEGAAE 150
Query: 388 MGPGGLLQGP 397
G
Sbjct: 151 TAQGNQETPA 160
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage,
oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6
PDB: 2hji_A
Length = 179
Score = 29.1 bits (65), Expect = 1.8
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 99 QKRFLLSALKPEL--IVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142
+++A + + +V E + D++ LR D +KE L ++ +
Sbjct: 49 TAETVIAAYQHAIDKLVAEKGYQSWDVISLRADNPQKEALREKFLN 94
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus,
icosahedral virus; HET: ADE; 2.50A {Adeno-associated
virus - 1} PDB: 3kic_A* 3kie_A* 3oah_A* 1vu0_U 1vu1_o
3tsx_A 3shm_A 1lp3_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A*
3ra9_A* 3raa_A* 3ux1_A
Length = 736
Score = 29.9 bits (66), Expect = 1.8
Identities = 16/83 (19%), Positives = 22/83 (26%)
Query: 297 APIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPG 356
+P P S+ Q ++ Q G PP+ P M G G
Sbjct: 149 SPQEPDSSSGIGKTGQQPAKKRLNFGQTGDSESVPDPQPLGEPPATPAAVGPTTMASGGG 208
Query: 357 GPRGGGNAGPPPFPSAGPGGMGG 379
P N G +A
Sbjct: 209 APMADNNEGADGVGNASGNWHCD 231
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 28.4 bits (63), Expect = 2.0
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 326 MQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGP 358
+ + Q GPG G GP G GP
Sbjct: 79 ISGLYQGAGGPGPGGFGAQGPKGG----SGSGP 107
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 28.7 bits (64), Expect = 2.0
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 330 QQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMG 389
G P G P G G G +G P + PGG G G G G G
Sbjct: 6 HHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAG 65
Query: 390 P 390
Sbjct: 66 T 66
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L
structural genomics, center for structural genomics of
INFE diseases; 2.70A {Salmonella enterica subsp}
Length = 175
Score = 29.0 bits (64), Expect = 2.0
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 313 QQQQQVQMQQQIHMQHMQ-QQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAG 365
++ + Q++ Q ++ M G P G G G G G RGGG+ G
Sbjct: 118 VAKEMESLGQKLDEQRVKRDVAMAQAGIPRGAGMGYGGCGGYGGGYHRGGGHMG 171
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein,
osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus
fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A
2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Length = 115
Score = 27.7 bits (62), Expect = 2.7
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 48 PLAYLEKTTSNIGLPDGRSLSPLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSAL 107
P+ L T I +G + + EI L R ++ + L++ +
Sbjct: 10 PIIELSNTFDKIA--EGNLEAEVPHQNRADEIGILAKSIERLRRSLKQLADDRTLLMAGV 67
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 29.1 bits (64), Expect = 3.1
Identities = 7/67 (10%), Positives = 11/67 (16%)
Query: 255 SPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPGSTMQPMSGMPQQ 314
S + + S PP + P T S
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 315 QQQVQMQ 321
+
Sbjct: 61 FAVPTIH 67
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 28.7 bits (63), Expect = 3.5
Identities = 8/50 (16%), Positives = 12/50 (24%)
Query: 330 QQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGG 379
Q+ P PPS ++ P + GG
Sbjct: 26 LQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGG 75
Score = 28.7 bits (63), Expect = 4.6
Identities = 13/54 (24%), Positives = 17/54 (31%)
Query: 326 MQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGG 379
M +Q+ P P + G + G P PS G G GG
Sbjct: 23 MTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGG 76
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 28.8 bits (63), Expect = 4.0
Identities = 30/269 (11%), Positives = 71/269 (26%), Gaps = 17/269 (6%)
Query: 125 DLRHDLARKEELIKRHYDKIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQAT 184
+LR + ++ + ++I QN + + ++ L EV ++ K ++
Sbjct: 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRL----EVDIDIKIRACKGSCARSF 170
Query: 185 LKFLDLARQMEAFFLQKRFLLSALKPELIVKEDIVDLRHDLAR--KEELIKRHYDKIAVW 242
+D E + ++ L A ++ L R K+ + H+
Sbjct: 171 DYQVDK----EGYDNIQKHLTQASSIDMHPDFQTTTLSTLKMRPLKDSNVPEHFKLKPSP 226
Query: 243 QNLLSDLQGWAKSPAHQGSTSSASGTTPPNSTPTQSGPGISAMGGPLPGMMGGMAPIVPG 302
+ K + S G +
Sbjct: 227 EMQAMSAFNNIKQMQVVLERPETDHVAEARGDSSPSHTGKLITSSHRRESPSLVDKTSSA 286
Query: 303 STMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGP-PSGPGGPSSGMMFMGPGGPRGG 361
S++ + ++V + + ++ + G S G G + G
Sbjct: 287 SSVHRCTR--TVTKKVISGPDGPREEIVEKMVSSDGSDCSHLQGGREGSTYHFSGTGDFH 344
Query: 362 GNAGPPP----FPSAGPGGMGGPGNLGPG 386
P F + ++G
Sbjct: 345 KLDRLLPDLESFFTHDSVSTSSRHSIGSS 373
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA
binding protein; NMR {Homo sapiens}
Length = 106
Score = 27.1 bits (60), Expect = 4.1
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 315 QQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGGPRGGG 362
+ + +I +Q GP GPP GPG P G G RG G
Sbjct: 64 PDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPG-----GRGRGRGQG 106
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure
initiative, southeast COLL for structural genomics,
secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Length = 143
Score = 27.4 bits (61), Expect = 4.9
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 257 AHQGSTSSASGTTPPNSTPTQSGPGISAMG-GPLPGMMGGMAPIVPGSTMQPMSGMPQQQ 315
+ +SG P S T M G PG G + + +Q
Sbjct: 3 SSHHHHHHSSGLVPRGSQSTSLYKKAGLMAKGGFPGFGGNIN------------NLVKQA 50
Query: 316 QQVQMQQQIHMQHMQQQ 332
Q +MQ+ M+ +Q++
Sbjct: 51 Q--KMQRD--MERVQEE 63
>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen,
jelly- roll topology, structural protein; 1.36A
{Bacillus anthracis}
Length = 220
Score = 28.0 bits (62), Expect = 4.9
Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 331 QQGMGPGGP--PSGPGGPSSGMMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGM 388
GP GP +G GP+ GP GP G P P+ G G
Sbjct: 34 TGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSG 93
Query: 389 GPGGLLQGP 397
G L
Sbjct: 94 GISLDLGIN 102
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function
project, S2F, unknown function; HET: MSE; 1.75A
{Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Length = 112
Score = 26.9 bits (60), Expect = 5.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 302 GSTMQPMSGMPQQQQQVQ-MQQQIHMQHMQQQ 332
GS M G+ +Q Q MQ++ MQ MQ++
Sbjct: 1 GSHMFGKGGLGGLMKQAQQMQEK--MQKMQEE 30
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid
receptor, icosahedral virus; 3.45A {Adeno-associated
virus - 5}
Length = 724
Score = 28.3 bits (62), Expect = 5.7
Identities = 10/68 (14%), Positives = 16/68 (23%)
Query: 298 PIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMGPGG 357
P + ++ + + P + M G GG
Sbjct: 140 TGKRIDDHFPKRKKARTEEDSKPSTSSDAEAGPSGSQQLQIPAQPASSLGADTMSAGGGG 199
Query: 358 PRGGGNAG 365
P G N G
Sbjct: 200 PLGDNNQG 207
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 26.8 bits (59), Expect = 5.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 328 HMQQQGMGPGGPPSGPGGPSSG 349
+ G PG P G G + G
Sbjct: 92 YQSAGGAPPGAAPGGAAGGAGG 113
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 28.4 bits (62), Expect = 6.1
Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 334 MGPGGPPSGPGGPSSGMMFMGPGGPRGG--GNAGPPPFPSAGPGGMGGPGNLGPGGMGPG 391
M P PP P G G G GG G ++ P P P P G GP
Sbjct: 16 MLPAPPPGQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPR 75
Query: 392 G 392
Sbjct: 76 V 76
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 27.1 bits (59), Expect = 6.9
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 287 GPLPGMMGGMAPIVPGSTMQPMSGM--PQQQQQVQMQQQIHMQHMQQQGMGP 336
GPL + + +G+ PQQ Q Q + + QG P
Sbjct: 1 GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 52
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis
domain swapping, cyclin-dependent KIN cycle; 3.00A
{Saccharomyces cerevisiae} SCOP: d.97.1.1
Length = 150
Score = 27.0 bits (59), Expect = 7.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 298 PIVPGSTMQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPG 337
P+ + ++ + QQQQQ Q QQQ Q Q Q +
Sbjct: 103 PLNYEAELRAATAAAQQQQQQQQQQQQQQQQHQTQSISND 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.138 0.415
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,674,861
Number of extensions: 437586
Number of successful extensions: 2636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1660
Number of HSP's successfully gapped: 537
Length of query: 415
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 319
Effective length of database: 4,021,377
Effective search space: 1282819263
Effective search space used: 1282819263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)