RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10214
(415 letters)
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 35.1 bits (80), Expect = 0.014
Identities = 21/149 (14%), Positives = 39/149 (26%), Gaps = 24/149 (16%)
Query: 108 KPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYDKIA-----------------VWQNL 150
P N+V D+ + + +++ + + +
Sbjct: 99 HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAI 158
Query: 151 LSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFL--DLARQMEAFFL--QKRFLLS 206
+ V TK D T E + + L+ + + + FLLS
Sbjct: 159 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS 218
Query: 207 ALKPELIVKEDIVDLRHDLARKEELIKRH 235
D L L + KRH
Sbjct: 219 NKNVC---HYDFPVLMDKLISDLPIYKRH 244
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 30.7 bits (68), Expect = 0.35
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 18/62 (29%)
Query: 83 TLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR-KEELIKRHY 141
+L + R + P N+ +K++ L+ ++ KE+ ++
Sbjct: 312 SLTYASRVRSIV------------NDPS-----KNVSSKEVARLKKLVSYWKEQAGRKGD 354
Query: 142 DK 143
D+
Sbjct: 355 DE 356
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 74
Score = 27.8 bits (62), Expect = 0.58
Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132
++ EID+ + + L L+KR + + + + K++ D R
Sbjct: 4 KLLRKEIDKIDNQIISL--------LKKRLEI--------AQAIGKIKKELNLPIEDRKR 47
Query: 133 KEELIKRHYDKIAVWQNLLS 152
+EE+++R + +++ +L
Sbjct: 48 EEEVLRRAGEFREIFEKILE 67
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 28.4 bits (63), Expect = 0.71
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 25/129 (19%)
Query: 73 DEIK--LEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDL 130
+EI+ ++ KF A E + K +L L
Sbjct: 4 NEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDY----------------ESASL 47
Query: 131 ARKEELIKRHYD---KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKF 187
L+++H +A Q+ + + + Q L + D + + + ++
Sbjct: 48 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELD----YHDAVNVNDRCQKICDQW 103
Query: 188 LDLARQMEA 196
L +
Sbjct: 104 DRLGTLTQK 112
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 28.0 bits (62), Expect = 0.87
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 24/115 (20%)
Query: 85 KFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLARKEELIKRHYD-- 142
++ E++ + L+A D + E LIK+H D
Sbjct: 7 LYMRDCELAESWMSAREAFLNAD-----------------DDANAGGNVEALIKKHEDFD 49
Query: 143 -KIAVWQNLLSDLQSCLQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEA 196
I + ++ LQ+ L ++ + + + Q ++ L +
Sbjct: 50 KAINGHEQKIAALQTVADQLIAQN----HYASNLVDEKRKQVLERWRHLKEGLIE 100
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella
pneumoniae [TaxId: 573]}
Length = 179
Score = 28.7 bits (64), Expect = 0.89
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 104 LSALKPEL--IVKEVNMVTKDIVDLRHDLARKEELIKRHYD 142
++A + + +V E + D++ LR D +KE L ++ +
Sbjct: 54 IAAYQHAIDKLVAEKGYQSWDVISLRADNPQKEALREKFLN 94
Score = 28.3 bits (63), Expect = 1.1
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 158 LQVLTKEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPEL--IVK 215
L T +E+ L ++ E QA +++A + + +V
Sbjct: 15 LWHSTNAEEIQQQLNAKGVRFERWQADRDLGAAPTAET--------VIAAYQHAIDKLVA 66
Query: 216 E------DIVDLRHDLARKEELIKRHYD 237
E D++ LR D +KE L ++ +
Sbjct: 67 EKGYQSWDVISLRADNPQKEALREKFLN 94
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 29.0 bits (64), Expect = 1.4
Identities = 13/110 (11%), Positives = 24/110 (21%), Gaps = 2/110 (1%)
Query: 292 MMGGMAPIVPGSTMQPMS-GMPQQQQQVQMQQQIHMQHMQQQGMG-PGGPPSGPGGPSSG 349
A G +M + G+ + + + +G GG + G
Sbjct: 524 EFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKL 583
Query: 350 MMFMGPGGPRGGGNAGPPPFPSAGPGGMGGPGNLGPGGMGPGGLLQGPLA 399
G + P + L P+A
Sbjct: 584 RPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMA 633
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 26.8 bits (59), Expect = 2.6
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 287 GPLPGMMGGMAPIVPGSTMQPMSGM--PQQQQQVQMQQQIHMQHMQQQGMGP 336
GPL + + +G+ PQQ Q Q + + QG P
Sbjct: 1 GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 52
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 27.7 bits (61), Expect = 2.7
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 9/137 (6%)
Query: 104 LSALKPELIVKEVNMVTKDIVDLRHDL-ARKEELIKRHYDKIAVWQNLLSDLQSCLQVLT 162
+++ K + N+ DI++ R L I R + L L
Sbjct: 85 INSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRG-LLGKIDITLHPELYRLLEED 143
Query: 163 KEDEVSTTLEKDEIKLEIDQATLKFLDLARQMEAFFLQ----KRF--LLSALKPELIVKE 216
+ + L ++I L LK + R + F + + LL+ L PEL
Sbjct: 144 ETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELC-SR 202
Query: 217 DIVDLRHDLARKEELIK 233
+ L R E++++
Sbjct: 203 APLQTTDVLQRAEQVLQ 219
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246
{Methanococcus jannaschii [TaxId: 2190]}
Length = 93
Score = 26.0 bits (57), Expect = 2.7
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 73 DEIKLEIDQATLKFLDLARQMEAFFLQKRFLLSALKPELIVKEVNMVTKDIVDLRHDLAR 132
EI+ +ID+ K L + +R L K+V + + +D R
Sbjct: 6 AEIRKKIDEIDNKILKARWPWAEKLIAERNSL--------AKDVAEIKNQLGIPINDPER 57
Query: 133 KEELIKR 139
++ + R
Sbjct: 58 EKYIYDR 64
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 26.0 bits (57), Expect = 3.9
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 312 PQQQQQVQMQQQIHMQHMQQQGMGP 336
P++ + + +++I M H M
Sbjct: 73 PKEYIKQKGERKIFMAHKNCGNMSE 97
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus
[TaxId: 53502]}
Length = 132
Score = 25.9 bits (57), Expect = 4.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 332 QGMGPGGPPSGPGGPSSGMMFMG 354
+G G + G G +F+
Sbjct: 46 EGNDSRGSYAQTDGHGRGYIFLD 68
>g1pnb.1 a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) [TaxId:
3708]}
Length = 106
Score = 25.5 bits (56), Expect = 5.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 313 QQQQQVQMQQQIHMQHMQQ---QGMGPGGPPSGP 343
Q+ Q + QQ+ H++ QQ Q + SGP
Sbjct: 2 PQKCQREFQQEQHLRACQQWIRQQLAGSPFQSGP 35
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 181
Score = 25.4 bits (55), Expect = 9.5
Identities = 10/50 (20%), Positives = 13/50 (26%)
Query: 305 MQPMSGMPQQQQQVQMQQQIHMQHMQQQGMGPGGPPSGPGGPSSGMMFMG 354
M M GM ++ Q M H Q G G +
Sbjct: 23 MLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHA 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.138 0.415
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,620,865
Number of extensions: 82702
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 24
Length of query: 415
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,199,356
Effective search space: 392189412
Effective search space used: 392189412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)