BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1022
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/94 (82%), Positives = 87/94 (92%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
LNIITVTLNM+ NFLGISIVGQSN+ GDGGIY+GSIMKGGAVA DGRIEPGDM+LQVND
Sbjct: 4 LNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 127
+NFENMSND+AVRVLR++V KPGPI L VAKCW+
Sbjct: 64 MNFENMSNDDAVRVLRDIVHKPGPIVLTVAKCWE 97
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 83/94 (88%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
TVTLNM+ +FLGISIVGQSN GDGGIY+GSIMKGGAVA DGRIEPGDM+LQVND+NFE
Sbjct: 1 TVTLNMERHHFLGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFE 60
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 131
NMSND+AVRVLRE+V + GPI L VAK WDP P+
Sbjct: 61 NMSNDDAVRVLREIVSQTGPISLTVAKAWDPTPR 94
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
+NIITVTLNM+ NFLGISIVGQSN+ GDGGIY+GSIMKGGAVA DGRIEPGDM+LQVND
Sbjct: 4 MNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 64 MNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
+NIITVTLNM+ NFLGISIVGQSN+ GDGGIY+GSIMKGGAVA DGRIEPGDM+LQVND
Sbjct: 4 MNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 64 MNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
+NIITVTLNM+ NFLGISIVGQSN+ GDGGIY+GSIMKGGAVA DGRIEPGDM+LQVND
Sbjct: 4 MNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 64 MNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
+NIITVTLNM+ NFLGISIVGQSN+ GDGGIY+GSIMKGGAVA DGRIEPGDM+LQVND
Sbjct: 4 MNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 64 MNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 81/90 (90%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
NIITVTLNM+ +FLGISIVGQSN GDGGIY+GSIMKGGAVA DGRIEPGDM+LQVND+
Sbjct: 1 NIITVTLNMERHHFLGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDV 60
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
NFENMSND+AVRVLRE+V + GPI L VAK
Sbjct: 61 NFENMSNDDAVRVLREIVSQTGPISLTVAK 90
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 79/90 (87%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
TVTLN + NFLGISIVGQSN+ GDGGIY+GSI KGGAVA DGRIEPGD +LQVNDINFE
Sbjct: 2 TVTLNXEKYNFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFE 61
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVAKCWD 127
N SND+AVRVLR++V KPGPI L VAKCWD
Sbjct: 62 NXSNDDAVRVLRDIVHKPGPIVLTVAKCWD 91
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 78/90 (86%)
Query: 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDIN 95
IITVTLN + NFLGISIVGQSN+ GDGGIY+GSI KGGAVA DGRIEPGD +LQVNDIN
Sbjct: 2 IITVTLNXEKYNFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDIN 61
Query: 96 FENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
FEN SND+AVRVLR++V KPGPI L VAK
Sbjct: 62 FENXSNDDAVRVLRDIVHKPGPIVLTVAKL 91
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 78/90 (86%)
Query: 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDIN 95
IITVTLN + NFLGISIVGQSN+ GDGGIY+GSI KGGAVA DGRIEPGD +LQVNDIN
Sbjct: 2 IITVTLNXEKYNFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDIN 61
Query: 96 FENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
FEN SND+AVRVLR++V KPGPI L VAK
Sbjct: 62 FENXSNDDAVRVLRDIVHKPGPIVLTVAKL 91
>pdb|1FSH|A Chain A, Structural Basis Of The Recognition Of The Dishevelled Dep
Domain In The Wnt Signaling Pathway
Length = 105
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 47/52 (90%)
Query: 189 ADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQCYYIFGD 240
ADVVDWL HVEGF +RREARKYAS MLK G++RHTVNKITFSEQCYY+FGD
Sbjct: 54 ADVVDWLYTHVEGFKERREARKYASSMLKHGFLRHTVNKITFSEQCYYVFGD 105
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 43/53 (81%), Positives = 47/53 (88%)
Query: 189 ADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQCYYIFGDL 241
+DVVDWL HVEGF +RREARKYAS +LK G IRHTVNKITFSEQCYY+FGDL
Sbjct: 42 SDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDL 94
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 49 LGISIVG---QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LGISI G QS G GIYV S++ G A ALDGRIEP D IL+V+D+N + M+ + V
Sbjct: 27 LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVV 86
Query: 106 RVLR 109
VLR
Sbjct: 87 EVLR 90
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 47 NFLGISIVGQSNKGG------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
N LGIS+ +KGG GGIYV +++ GA DGRI GD +L VN ++ E +
Sbjct: 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 79
Query: 101 NDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 131
+ +AV LR Q + L++ K P K
Sbjct: 80 HKQAVETLRNTGQ---VVHLLLEKGQSPTSK 107
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 47 NFLGISIVGQSNKG-GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
N LGIS+ G N GGIYV +++ GA DGRI GD +L VN ++ E ++ +AV
Sbjct: 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV 75
Query: 106 RVLREVVQKPGPIKLVVAKCWDP 128
LR Q + L++ K P
Sbjct: 76 ETLRNTGQ---VVHLLLEKGQSP 95
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 47 NFLGISIVGQSNKG-GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
N LGIS+ G N GGIYV +++ GA DGRI GD +L VN ++ E ++ +AV
Sbjct: 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV 75
Query: 106 RVLREVVQKPGPIKLVVAKCWDP 128
LR Q + L++ K P
Sbjct: 76 ETLRNTGQ---VVHLLLEKGQSP 95
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVND 93
IITVTL N +G+SIV G D GIYV S++KGGA +DGR+ GD +L V+
Sbjct: 11 EIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 94 INFENMSNDEAVRVL 108
+ +S + A ++
Sbjct: 69 RSLVGLSQERAAELM 83
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVND 93
IITVTL N +G+SIV G D GIYV S++KGGA +DGR+ GD +L V+
Sbjct: 5 EIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 94 INFENMSNDEAVRVL 108
+ +S + A ++
Sbjct: 63 RSLVGLSQERAAELM 77
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVND 93
IITVTL N +G+SIV G D GIYV S++KGGA +DGR+ GD +L V+
Sbjct: 5 EIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 94 INFENMSNDEAVRVL 108
+ +S + A ++
Sbjct: 63 RSLVGLSQERAAELM 77
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVND 93
IITVTL N +G+SIV G D GIYV S++KGGA +DGR+ GD +L V+
Sbjct: 11 EIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 94 INFENMSNDEAVRVL 108
+ +S + A ++
Sbjct: 69 RSLVGLSQERAAELM 83
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV SI++GGA DG+++ GD +L VN + E ++++EAV
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAV 75
Query: 106 RVLR 109
L+
Sbjct: 76 TALK 79
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG +IVG +++ D GIYV I + GA ALDGR++ GD IL VN + +N+ + +AV
Sbjct: 22 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 81
Query: 106 RVLR 109
+ R
Sbjct: 82 DLFR 85
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG +IVG +++ D GIYV I + GA ALDGR++ GD IL VN + +N+ + +AV
Sbjct: 20 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 106 RVLR 109
+ R
Sbjct: 80 DLFR 83
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DGR++ GD IL VN + E++ +++AV
Sbjct: 167 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 226
Query: 106 RVLR 109
L+
Sbjct: 227 AALK 230
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL VN+++ +++ AV
Sbjct: 72 LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 131
Query: 106 RVLRE--------VVQKPGPIKLVVAKCWDPNPKG 132
L+E V+++ P + V+ PKG
Sbjct: 132 EALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKG 166
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 49 LGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG +IVG G DG GI++ I+ GG L G + GD IL VN ++ N S+++A
Sbjct: 320 LGFNIVG----GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 375
Query: 108 LREVVQ 113
L+ Q
Sbjct: 376 LKNAGQ 381
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN ++ E ++++EAV
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAV 75
Query: 106 RVLR 109
L+
Sbjct: 76 TALK 79
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN++ E ++++EAV
Sbjct: 15 LGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAV 74
Query: 106 RVLREV-------VQKPG 116
L+ V KPG
Sbjct: 75 TALKNTSDFVYLKVAKPG 92
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I+ GGA DGR++ GD +L VN+ + E ++++EAV
Sbjct: 37 LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAV 96
Query: 106 RVLR 109
+L+
Sbjct: 97 AILK 100
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 49 LGISIVGQSNKGG------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
LGIS+ +KGG GGIYV +I+ GA DGRI GD +L VN ++ E ++
Sbjct: 17 LGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHK 76
Query: 103 EAVRVLREVVQ 113
+AV LR Q
Sbjct: 77 QAVETLRNTGQ 87
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 49 LGISIVGQSNKG-GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LGIS+ G N GGIYV +I+ GA DGRI GD +L VN ++ E ++ +AV
Sbjct: 25 LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET 84
Query: 108 LREVVQ 113
LR Q
Sbjct: 85 LRNTGQ 90
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 49 LGISIVGQSNKG-GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LGIS+ G N GGIYV +I+ GA DGRI GD +L VN ++ E ++ +AV
Sbjct: 17 LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET 76
Query: 108 LREVVQ 113
LR Q
Sbjct: 77 LRNTGQ 82
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG +IVG +++ D GIYV I + GA ALDGR++ GD IL VN + +N+ + +AV
Sbjct: 30 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 89
Query: 106 RVLR 109
+ R
Sbjct: 90 DLFR 93
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG+SIVG S+ G I + + + GA DGR+ GD IL+VN I+ ++DEA+ VL
Sbjct: 17 LGLSIVGGSDTL-LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL 75
Query: 109 REVVQK 114
R+ Q+
Sbjct: 76 RQTPQR 81
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN++ E ++++EAV
Sbjct: 21 LGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAV 80
Query: 106 RVLR 109
L+
Sbjct: 81 TALK 84
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN++ E ++++EAV
Sbjct: 22 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 81
Query: 106 RVLR 109
L+
Sbjct: 82 TALK 85
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN + E ++++EAV
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAV 75
Query: 106 RVLR 109
L+
Sbjct: 76 TALK 79
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN + E ++++EAV
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAV 75
Query: 106 RVLR 109
L+
Sbjct: 76 TALK 79
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN++ E ++++EAV
Sbjct: 24 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 83
Query: 106 RVLR 109
L+
Sbjct: 84 TALK 87
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DGR++ GD IL VN + E++ +++AV
Sbjct: 120 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 179
Query: 106 RVLR 109
L+
Sbjct: 180 AALK 183
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL VN+++ +++ AV
Sbjct: 25 LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 84
Query: 106 RVLRE--------VVQKPGPIKLVVAKCWDPNPKGY-FTI 136
L+E V+++ P + V+ PKG F+I
Sbjct: 85 EALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI 124
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN++ E ++++EAV
Sbjct: 12 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 71
Query: 106 RVLR 109
L+
Sbjct: 72 TALK 75
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D GI++ I+ GGA A DGR+ D IL+VN+++ +S+ +AV
Sbjct: 22 LGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAV 81
Query: 106 RVLRE 110
L+E
Sbjct: 82 EALKE 86
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG+SIVG + + I + + + GA A DGR+ GD IL+VN ++ N S++EA+ L
Sbjct: 30 LGLSIVGGKDTPLNA-IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITAL 88
Query: 109 REVVQKPGPIKLVVAK 124
R+ QK ++LVV +
Sbjct: 89 RQTPQK---VRLVVYR 101
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI +G + GD IY+ I++GGA DGR++ GD +L VN+ N +++ ++EAV
Sbjct: 16 LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75
Query: 106 RVLREV-------VQKPG 116
L+ V KPG
Sbjct: 76 ASLKNTSDMVYLKVAKPG 93
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DG+++ GD +L VN + E ++++EAV
Sbjct: 11 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAV 70
Query: 106 RVLR 109
L+
Sbjct: 71 TALK 74
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DGR++ GD IL VN + E++ +++AV
Sbjct: 110 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 169
Query: 106 RVLR 109
L+
Sbjct: 170 AALK 173
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL VN+++ +++ AV
Sbjct: 15 LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 74
Query: 106 RVLRE--------VVQKPGPIKLVVAKCWDPNPKGY-FTI 136
L+E V+++ P + V+ PKG F+I
Sbjct: 75 EALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI 114
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DGR++ GD IL VN + E++ +++AV
Sbjct: 113 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 172
Query: 106 RVLR 109
L+
Sbjct: 173 AALK 176
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL VN+++ +++ AV
Sbjct: 18 LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 77
Query: 106 RVLRE--------VVQKPGPIKLVVAKCWDPNPKGY-FTI 136
L+E V+++ P + V+ PKG F+I
Sbjct: 78 EALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI 117
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 46 VNFLGISIVGQ--SNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDE 103
V LGI+I G K GI+V SI K AV DGRI+ GD I+ V+ N + +N +
Sbjct: 14 VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQ 73
Query: 104 AVRVLREVVQ 113
AV VLR Q
Sbjct: 74 AVEVLRHTGQ 83
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 49 LGISI---VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI VG + GD IYV I++GGA DGR++ GD IL VN + E++ +++AV
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 75
Query: 106 RVLR 109
L+
Sbjct: 76 AALK 79
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 39 VTLNMDTVNFLGISIVGQSNK--GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINF 96
V LN LG+S+ G +K D GI+V SI+ GGA + DGR+ D ++ VN +
Sbjct: 13 VPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESL 72
Query: 97 ENMSNDEAVRVLREVV----QKPGPIKLVVAK 124
+N EA+ LR + K G I+L+VA+
Sbjct: 73 LGKANQEAMETLRRSMSTEGNKRGMIQLIVAR 104
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL+VN+++ ++++ +AV
Sbjct: 24 LGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAV 83
Query: 106 RVLRE 110
L+E
Sbjct: 84 EALKE 88
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 49 LGISIVGQSNK--GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVR 106
LG+S+ G +K D GI+V SI+ GGA + DGR+ D ++ VN + +N EA+
Sbjct: 20 LGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAME 79
Query: 107 VLREVV----QKPGPIKLVVAK 124
LR + K G I+L+VA+
Sbjct: 80 TLRRSMSTEGNKRGMIQLIVAR 101
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL+VN+ + ++++ +AV
Sbjct: 14 LGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAV 73
Query: 106 RVLRE 110
L+E
Sbjct: 74 EALKE 78
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 37 ITVTLNMDTVNFLGISIVGQSNK--GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
+ + LN LG+S+ G ++ G D GI++ SI+ GGA DGR+ D ++ VN
Sbjct: 27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGE 86
Query: 95 NFENMSNDEAVRVLREVVQKPGPIK----LVVAKCWDPNP 130
SN EA+ LR + G I+ LV+ + P+
Sbjct: 87 TLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 49 LGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG SIVG + GD IYV ++ GA + DGR++ GD I+ VN + E ++++EAV +
Sbjct: 38 LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAI 97
Query: 108 LREVVQKPGPIKLVV 122
L+ + G + L+V
Sbjct: 98 LK---RTKGTVTLMV 109
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
+ +T+ L LG+SIVG+ N D G++V I+KGG DGR+ GD IL VN
Sbjct: 4 DTLTIGLQKKPGKGLGLSIVGKRN---DTGVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 95 NFENMSNDEAVRVLR 109
+ N + + +L+
Sbjct: 61 DVRNATQEAVAALLK 75
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 49 LGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG +IVG G DG GI+V I+ GG L G + GD IL VN +N N ++++A
Sbjct: 25 LGFNIVG----GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAA 80
Query: 108 LREVVQ 113
L+ Q
Sbjct: 81 LKRAGQ 86
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 49 LGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG +IVG G DG GI+V I+ GG L G + GD IL VN +N N ++++A
Sbjct: 28 LGFNIVG----GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAA 83
Query: 108 LREVVQ 113
L+ Q
Sbjct: 84 LKRAGQ 89
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL VN+++ +++ AV
Sbjct: 14 LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 73
Query: 106 RVLRE 110
L+E
Sbjct: 74 EALKE 78
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL VN+++ +++ AV
Sbjct: 14 LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 73
Query: 106 RVLRE 110
L+E
Sbjct: 74 EALKE 78
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 49 LGISIVGQS-NKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG SI + GG IYV +I+ GA DGR++ GD +++VN ++ S +E V +
Sbjct: 24 LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSL 83
Query: 108 LREVVQKPGPIKLVV 122
LR + G + L+V
Sbjct: 84 LRS-TKMEGTVSLLV 97
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 39 VTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
V + D LG+++ G S++ D IYV S+ GG ++ DGRI+ GD++L V+ +
Sbjct: 28 VNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELT 87
Query: 98 NMSNDEAVRVLR 109
+S EAV +L+
Sbjct: 88 EVSRSEAVALLK 99
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 49 LGISIVG---QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G + D GI++ I+ GGA A+DGR+ D +L+VN+++ + + AV
Sbjct: 17 LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAV 76
Query: 106 RVLREVVQKPGPIKLVVAKCWDPNPK 131
L+E GP+ +V + P P+
Sbjct: 77 EALKEA----GPVVRLVVRRRQPPPE 98
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 49 LGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G ++ G D I++ I+ GGA A DGR+ D IL VN+++ +++ AV
Sbjct: 15 LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 74
Query: 106 RVLRE 110
L+E
Sbjct: 75 EALKE 79
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 49 LGISIVGQS-NKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG SI + GG IYV +I+ GA DGR++ GD +++VN ++ S +E V +
Sbjct: 43 LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSL 102
Query: 108 LREVVQKPGPIKLVVAKCWD 127
LR + G + L+V + D
Sbjct: 103 LRS-TKMEGTVSLLVFRQED 121
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 49 LGISIVGQS-NKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG SI + GG IYV +I+ GA DGR++ GD +++VN ++ S +E V +
Sbjct: 18 LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSL 77
Query: 108 LREVVQKPGPIKLVV 122
LR + G + L+V
Sbjct: 78 LRS-TKMEGTVSLLV 91
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 49 LGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG +IVG G DG GI++ I+ GG L G + GD IL VN ++ N S+++A
Sbjct: 27 LGFNIVG----GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 82
Query: 108 LREVVQ 113
L+ Q
Sbjct: 83 LKNAGQ 88
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDG----GIYVGSIMKGGAVALDGRIEPGDMIL 89
L + V L D + LGISI+G G GI+V ++ +GGA DGRI+ D I+
Sbjct: 79 LELFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 137
Query: 90 QVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+V+ I+ ++ + A VLR G ++ V+ +
Sbjct: 138 EVDGISLVGVTQNFAATVLR---NTKGNVRFVIGR 169
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 49 LGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG +IVG G DG GI+V I+ GG L G ++ GD IL VN I+ S+++A
Sbjct: 16 LGFNIVG----GEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAA 71
Query: 108 LREVVQ 113
L+ Q
Sbjct: 72 LKGAGQ 77
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 49 LGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG +I+G G DG GI++ I+ GG L G + GD IL VN ++ N S+++A
Sbjct: 27 LGFNIIG----GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 82
Query: 108 LREVVQ 113
L+ Q
Sbjct: 83 LKNAGQ 88
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 49 LGISIVGQSN----KGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEA 104
LG SI G + GD GI+V I +GGA G ++ GD +L +N ++ +D A
Sbjct: 20 LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHA 79
Query: 105 VRVL 108
V +L
Sbjct: 80 VSLL 83
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG IVG G + V +I+ GG DGR++ GD IL++ N + M++++ +VL
Sbjct: 28 LGFGIVGGKTSG----VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL 83
Query: 109 REVVQKPGPIKLVVAKCWDPNPKGYFTI 136
R ++++VA+ +P G ++
Sbjct: 84 RNCGNS---VRMLVAR----DPAGDISV 104
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 43 MDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
M++ + LG+++ +++ D GIY+ I A DGRI GD I+Q+N I +N +
Sbjct: 28 MNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--RE 85
Query: 103 EAVRVLREVVQKPGPIKLVVAK 124
EAV +L ++ L++A+
Sbjct: 86 EAVALL--TSEENKNFSLLIAR 105
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDG----GIYVGSIMKGGAVALDGRIEPGDMIL 89
L + V L D+ LGISI+G G GI+V ++ +GGA DGRI+ D+++
Sbjct: 79 LELFPVELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 137
Query: 90 QVNDINFENMSNDEAVRVLR 109
+V+ + ++ A VLR
Sbjct: 138 EVDGTSLVGVTQSFAASVLR 157
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDG----GIYVGSIMKGGAVALDGRIEPGDMIL 89
L + V L D + LGISI+G G GI+V ++ +GGA DGRI+ D I+
Sbjct: 8 LELFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 66
Query: 90 QVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130
+V+ I+ ++ + A VLR G ++ V+ + P
Sbjct: 67 EVDGISLVGVTQNFAATVLR---NTKGNVRFVIGREKPSGP 104
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDG----GIYVGSIMKGGAVALDGRIEPGDMIL 89
L + V L D+ LGISI+G G GI+V ++ +GGA DGRI+ D+++
Sbjct: 79 LELFPVELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 137
Query: 90 QVNDINFENMSNDEAVRVLR 109
+V+ + ++ A VLR
Sbjct: 138 EVDGTSLVGVTQSFAASVLR 157
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 49 LGISIVGQSNKGGDG----GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEA 104
LGISI+G G GI+V ++ +GGA DGRI+ D I++V+ I+ ++ + A
Sbjct: 17 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 76
Query: 105 VRVLREVVQKPGPIKLVVAK 124
VLR G ++ V+ +
Sbjct: 77 ATVLR---NTKGNVRFVIGR 93
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 42 NMDTVNFLGISIVGQSNKGG-DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
+M V F VG GG D GI+V +++ A +G +E GD IL+VN+++F N+
Sbjct: 9 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 67
Query: 101 NDEAVRVL 108
+EAV L
Sbjct: 68 REEAVLFL 75
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG +IVG + G+G I++ I+ GG L G + GD IL VN ++ N S+++A L
Sbjct: 19 LGFNIVG--GEXGEG-IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 75
Query: 109 REVVQ 113
+ Q
Sbjct: 76 KNAGQ 80
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
N+I+V L V LG + + +K + + +++GGA G I+ GD+IL VND
Sbjct: 8 NVISVRLFKRKVGGLGFLVKERVSKPP---VIISDLIRGGAAEQSGLIQAGDIILAVNDR 64
Query: 95 NFENMSNDEAVRVLREVVQK 114
++S D A+ VLR + +
Sbjct: 65 PLVDLSYDSALEVLRGIASE 84
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG +IVG + G+G I++ I+ GG L G + GD IL VN ++ N S+++A L
Sbjct: 24 LGFNIVG--GEXGEG-IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 80
Query: 109 REVVQ 113
+ Q
Sbjct: 81 KNAGQ 85
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 42 NMDTVNFLGISIVGQSNKGG-DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
+M V F VG GG D GI+V +++ A +G +E GD IL+VN+++F N+
Sbjct: 1 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 59
Query: 101 NDEAVRVL 108
+EAV L
Sbjct: 60 REEAVLFL 67
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
N+I+V L V LG + + +K + + +++GGA G I+ GD+IL VND
Sbjct: 3 NVISVRLFKRKVGGLGFLVKERVSKPP---VIISDLIRGGAAEQSGLIQAGDIILAVNDR 59
Query: 95 NFENMSNDEAVRVLREVVQK 114
++S D A+ VLR + +
Sbjct: 60 PLVDLSYDSALEVLRGIASE 79
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
N+I+V L V LG + + +K + + +++GGA G I+ GD+IL VND
Sbjct: 1 NVISVRLFKRKVGGLGFLVKERVSKPP---VIISDLIRGGAAEQSGLIQAGDIILAVNDR 57
Query: 95 NFENMSNDEAVRVLREVVQK 114
++S D A+ VLR + +
Sbjct: 58 PLVDLSYDSALEVLRGIASE 77
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 42 NMDTVNFLGISIVGQSNKGG-DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
+M V F VG GG D GI+V +++ A +G +E GD IL+VN+++F N+
Sbjct: 2 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 60
Query: 101 NDEAVRVL 108
+EAV L
Sbjct: 61 REEAVLFL 68
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 49 LGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINF-ENMSNDEAVR 106
LG S+VG +S G+ GI+V I +G DGR++ D IL +N + +++ +A+
Sbjct: 34 LGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAIS 93
Query: 107 VLREVVQKPGPIKLVVAKCWDPN 129
+L++ ++LV+A+ P
Sbjct: 94 ILQKA---KDTVQLVIARGSLPQ 113
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
+ITVT LG+ I+G N+ +Y+ ++ GG DGR++PGD ++ +N
Sbjct: 16 FRVITVTKETG----LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINK 71
Query: 94 INFENMSNDEAVRVL 108
+ +S +EA ++
Sbjct: 72 ESMIGVSFEEAKSII 86
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDG----GIYVGSIMKGGAVALDGRIEPGDMIL 89
+ + V L D+ LGISI+G G GI+V ++ +GGA DGRI+ D+++
Sbjct: 3 MELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 61
Query: 90 QVNDINFENMSNDEAVRVLR 109
+V+ + ++ A VLR
Sbjct: 62 EVDGTSLVGVTQSFAASVLR 81
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 42 NMDTVNFLGISIVGQSNKGG-DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
+M V F VG GG D GI+V +++ A +G +E GD IL+VN+++F N+
Sbjct: 29 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 87
Query: 101 NDEAVRVL 108
+EAV L
Sbjct: 88 REEAVLFL 95
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 42 NMDTVNFLGISIVGQSNKGG-DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
+M V F VG GG D GI+V +++ A +G +E GD IL+VN+++F N+
Sbjct: 4 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 62
Query: 101 NDEAVRVL 108
+EAV L
Sbjct: 63 REEAVLFL 70
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 37 ITVTLNMDTVNFLGISIVGQSN----KGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
+T+T+ T LGISI G KG D GI++ + + G A G + GD +L+VN
Sbjct: 5 LTLTILRQT-GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 62
Query: 93 DINFENMSNDEAVRVLR 109
+ + + EAV LR
Sbjct: 63 GVALQGAEHHEAVEALR 79
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 37 ITVTLNMDTVNFLGISIVGQSN----KGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
+T+T+ + LGISI G KG D GI++ + + G A G + GD +L+VN
Sbjct: 17 LTLTI-LRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 74
Query: 93 DINFENMSNDEAVRVLR 109
+ + + EAV LR
Sbjct: 75 GVALQGAEHHEAVEALR 91
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 49 LGISIVGQSNKGG-------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSN 101
LGISI G + D GI++ + GA DGR+ G +L+VN + +++
Sbjct: 23 LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH 82
Query: 102 DEAVRVLREV 111
EAV++LR V
Sbjct: 83 GEAVQLLRSV 92
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LGI+I S++ + + I KG G +E GD +L +++I ++ S ++AV++L
Sbjct: 121 LGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL 180
Query: 109 RE 110
++
Sbjct: 181 QQ 182
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 49 LGISIVGQSNKGGD-------GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSN 101
LGISIVG G GI++ +++ +G ++PGD I++V+ ++ + S+
Sbjct: 18 LGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH 77
Query: 102 DEAVRVLRE 110
++AV +R+
Sbjct: 78 EQAVEAIRK 86
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123
G+Y+ +++ G A DGR+ GD IL+VN + + AV ++R +K ++ +VA
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKK---MRFLVA 93
Query: 124 KC 125
K
Sbjct: 94 KS 95
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+ V ++ GG+ G++ PGD ILQ+N+ E++S + AV +LRE + + V +
Sbjct: 33 LTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDS---LSITVVR 87
Query: 125 CWDPNPK 131
C P
Sbjct: 88 CTSSGPS 94
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 39 VTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFEN 98
VTL D N +GISI G + G+Y+ + ALDG + GD I VN + +
Sbjct: 9 VTLQKDAQNLIGISIGGGAQY--CPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 66
Query: 99 MSNDEAVRVLREV 111
+ E ++++EV
Sbjct: 67 KTKVEVAKMIQEV 79
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 49 LGISIVGQSNKGG---DG----GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSN 101
LGISIVG G +G GI++ +++ +G ++PGD I++V+ ++ + S+
Sbjct: 38 LGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH 97
Query: 102 DEAVRVLRE 110
++AV +R+
Sbjct: 98 EQAVEAIRK 106
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 109
GI++ S +K G+++ + +E GD I++VN ++F N+ + EAV VL+
Sbjct: 28 GIFI-SHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 72
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP-GPIKLVVA 123
I+V + + G DG + GD+IL++N ENMS +A R++++K G ++LVV
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA----RKLIEKSRGKLQLVVL 78
Query: 124 K 124
+
Sbjct: 79 R 79
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP-GPIKLVVA 123
I+V + + G DG + GD+IL++N ENMS +A R++++K G ++LVV
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA----RKLIEKSRGKLQLVVL 78
Query: 124 K 124
+
Sbjct: 79 R 79
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 9/75 (12%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG SI G S G GIYV S+++ G++A + GD IL+VND + +++ EAV+ L
Sbjct: 23 LGFSIRGGSEHGV--GIYV-SLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKAL 79
Query: 109 REVVQKPGPIKLVVA 123
+ G KLV++
Sbjct: 80 K------GSKKLVLS 88
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 109
GI++ S +K G+++ + +E GD I++VN ++F N+ + EAV VL+
Sbjct: 42 GIFI-SHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 36.2 bits (82), Expect = 0.017, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
I+V I + A DG I+ GD++L++N ENMS +A ++ + G +K+VV +
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE---RSKGKLKMVVQR 79
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
I+V I + A DG I+ GD++L++N ENMS +A ++ + G +K+VV +
Sbjct: 22 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE---RSKGKLKMVVQR 78
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
IY+ ++ GG G ++ GD +L VN ++ E +++AV +L+ G +KLVV
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA---QGSVKLVV 86
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
I+V I + A DG I+ GD++L++N ENMS +A ++ + G +K+VV +
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE---RSKGKLKMVVQR 81
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G ++VG D + + S++ G ALDG++E GD+I+ VND ++ + V++
Sbjct: 31 FGFTVVGGDEP--DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 88
Query: 109 REV 111
+ +
Sbjct: 89 QSI 91
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG+++ G +K DG V ++ +GG A +++ GD I VN IN +DE + +L
Sbjct: 21 LGLTVSGGIDK--DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLL 78
Query: 109 REVVQK 114
+ V ++
Sbjct: 79 KNVGER 84
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114
+ + + GG +G I+PGD +L V+ I ++ EA+ +L++ Q+
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG++I G + G GIY+ + G G ++ GD IL+VN +F N+ +DEAVR+L
Sbjct: 34 LGLTIRGGAEYGL--GIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLL 90
Query: 109 R 109
+
Sbjct: 91 K 91
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 35 NIITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
+ TVTL + LG S+ G + + GD + + I KG A ++PGD ILQ+
Sbjct: 29 TVCTVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGG 87
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVV 122
+ ++ EA +++ + GP+ +V+
Sbjct: 88 TAMQGLTRFEAWNIIKALPD--GPVTIVI 114
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 49 LGISIVGQSN-----KGGD--GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSN 101
LGISIVG K G+ GI++ +++ ++ GD IL+V+ ++ +N S+
Sbjct: 29 LGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH 88
Query: 102 DEAVRVLR 109
EAV ++
Sbjct: 89 SEAVEAIK 96
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 39 VTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFEN 98
VTL D N +GISI G + +Y+ + ALDG + GD I VN + +
Sbjct: 23 VTLQKDAQNLIGISIGGGAQYCP--CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 80
Query: 99 MSNDEAVRVLREV 111
+ E ++++EV
Sbjct: 81 KTKVEVAKMIQEV 93
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G ++VG D + + S++ G ALDG++E GD+I+ VND ++ + V++
Sbjct: 13 FGFTVVGGDEP--DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 70
Query: 109 REV 111
+ +
Sbjct: 71 QSI 73
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G+++ G + GD + V ++K G GR+E GD++L +N + + +++ +AV +
Sbjct: 24 FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI 83
Query: 109 R 109
R
Sbjct: 84 R 84
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 39 VTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFEN 98
VTL D N +GISI G + +Y+ + ALDG + GD I VN + +
Sbjct: 6 VTLQKDAQNLIGISIGGGAQYCP--CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 63
Query: 99 MSNDEAVRVLREV 111
+ E ++++EV
Sbjct: 64 KTKVEVAKMIQEV 76
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 39 VTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFEN 98
VTL D N +GISI G + +Y+ + ALDG + GD I VN + +
Sbjct: 28 VTLQKDAQNLIGISIGGGAQYCP--CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 85
Query: 99 MSNDEAVRVLREV 111
+ E ++++EV
Sbjct: 86 KTKVEVAKMIQEV 98
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
++ TL + F G +I+G D + V S++ G A DG++E GD+I+ +N++
Sbjct: 19 TFLSTTLKKSNMGF-GFTIIGGDEP--DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV 75
Query: 95 NFENMSNDEAVRVLREV 111
++ + V++ + V
Sbjct: 76 CVLGHTHADVVKLFQSV 92
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 34 LNIITVTLNM-DTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
+ I+ V L+ D+ LGI +V +++ + G+++ +++GG A DGR+ D +L +N
Sbjct: 2 MEILQVALHKRDSGEQLGIKLVRRTD---EPGVFILDLLEGGLAAQDGRLSSNDRVLAIN 58
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 129
+ + + + A ++++ ++ + L +A+ P
Sbjct: 59 GHDLKYGTPELAAQIIQASGER---VNLTIARPGKPE 92
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 34 LNIITVTLNMDTVNFLGISIVG--QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQV 91
+ + VTL+ + N G I G ++ + + S+ GG +G I+PGD +L V
Sbjct: 2 MRTVEVTLHKEG-NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
Query: 92 NDINFENMSNDEAVRVLREVVQK 114
+ I ++ EA+ +L++ Q+
Sbjct: 61 DGIRLLGTTHAEAMSILKQCGQE 83
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 67 VGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
V I+ GG + G + GD IL++N N N S D+ + ++E
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKE 83
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 47 NFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVR 106
N LG+S+ G ++ I+V I G A DGR+ GD +L++N+ S+ A
Sbjct: 36 NGLGLSLAGNKDRS-RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASA 94
Query: 107 VLREVVQKPGPIKLVVAKCWD 127
+++ P +KLV + D
Sbjct: 95 IIKTA---PSKVKLVFIRNED 112
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 67 VGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
V I+ GG + G + GD IL++N N N S D+ + ++E
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKE 83
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
VT+ LGISI G + NK I + I KG A + GD IL VN +
Sbjct: 81 VTVRKADAGGLGISIKGGRENKMP---ILISKIFKGLAADQTEALFVGDAILSVNGEDLS 137
Query: 98 NMSNDEAVRVLREV 111
+ ++DEAV+ L++
Sbjct: 138 SATHDEAVQALKKT 151
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 49 LGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVNDINF 96
LG +IVG G DG GI++ I+ GG L G + GD I+ VN ++
Sbjct: 20 LGFNIVG----GEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDL 64
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
I + S++ G G + PGD ++ VN+ +N S EAV +L+ V PG + L +
Sbjct: 46 IVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV--PPGLVHLGI-- 101
Query: 125 CWDPN 129
C P+
Sbjct: 102 CSGPS 106
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 39 VTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFEN 98
VTL LG +I G K GI++ ++ G ++ GD +L VND++F++
Sbjct: 19 VTLKKPPGAQLGFNIRG--GKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQD 75
Query: 99 MSNDEAVRVLR 109
+ + +AV +L+
Sbjct: 76 IEHSKAVEILK 86
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 37 ITVTLNMDTVNFLGISIVGQ--SNKGGDG----GIYVGSIMKGGAVALDGRIEPGDMILQ 90
+T+ L+ D+ LG +I+G S DG GI+V I+ G A +G ++ D I++
Sbjct: 10 LTLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE 68
Query: 91 VNDINFENMSNDEAVRVLR 109
VN + ++D+AV +
Sbjct: 69 VNGRDLSRATHDQAVEAFK 87
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 67 VGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111
V IM GG + G + GD I ++N I+ N + ++ ++LRE+
Sbjct: 29 VARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM 73
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LGISI G G I + I G G + GD IL VN +N + + EAV +L
Sbjct: 16 LGISITGGKEHGVP--ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 73
Query: 109 RE 110
+
Sbjct: 74 SQ 75
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 50 GISIVGQSNKGG-----DGGIY-----VGSIMKGGAVALDGRIEPGDMILQVNDINFENM 99
G ++ GQ ++GG +G +Y V +++ GGA G + GD IL+VN +N E
Sbjct: 20 GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGA 78
Query: 100 SNDEAVRVLR 109
++ + V ++R
Sbjct: 79 THKQVVDLIR 88
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 49 LGISIVGQSNKGGDG-GIYVGSIMKGGAVALDGRIEPGDMILQVNDINF 96
LG +IVG G DG GI++ I+ GG L G + GD I+ VN ++
Sbjct: 17 LGFNIVG----GEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDL 61
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LGISI G G I + I G G + GD IL VN +N + + EAV +L
Sbjct: 41 LGISITGGKEHGVP--ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 98
Query: 109 REVVQKPGPIKLVV 122
Q+ G I+ V
Sbjct: 99 S---QQRGEIEFEV 109
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G I V I +GGA G I GD + +VN I E+ +E +++L
Sbjct: 28 GAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 50 GISIVGQSNKGG-----DGGIY-----VGSIMKGGAVALDGRIEPGDMILQVNDINFENM 99
G ++ GQ ++GG +G +Y V +++ GGA G + GD IL+VN +N E
Sbjct: 20 GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGA 78
Query: 100 SNDEAVRVLR 109
++ + V ++R
Sbjct: 79 THKQVVDLIR 88
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LGISI G G I + I G G + GD IL VN +N + + EAV +L
Sbjct: 23 LGISITGGKEHGVP--ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 80
Query: 109 RE 110
+
Sbjct: 81 SQ 82
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
D GIYV + +GG + G ++ GD I+QVN + +++D+A + L
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 49 LGISIVGQSNKGG------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
LG SI G G D GI+V + G + ++PGD I+Q N +F N+ +
Sbjct: 5 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 62
Query: 103 EAVRVLR 109
+AV +L+
Sbjct: 63 QAVSLLK 69
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 129
+G A A D + PGD+I+ +N + ENM + EA +R Q P++L + + P+
Sbjct: 40 RGKAEAAD--LRPGDIIVAINGQSAENMLHAEAQSKIR---QSASPLRLQLDRSSGPS 92
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
D GIYV + +GG + G ++ GD I+QVN + +++D+A + L
Sbjct: 53 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRL 98
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 49 LGISIVGQSNKGG------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
LG SI G G D GI+V + G + ++PGD I+Q N +F N+ +
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 61
Query: 103 EAVRVLR 109
+AV +L+
Sbjct: 62 QAVSLLK 68
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
D GIYV + +GG + G ++ GD I+QVN + +++D+A + L
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 50 GISIVGQSNKGG-----DGGIY-----VGSIMKGGAVALDGRIEPGDMILQVNDINFENM 99
G ++ GQ ++GG +G +Y V +++ GGA G + GD IL+VN +N E
Sbjct: 20 GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGA 78
Query: 100 SNDEAVRVLR 109
++ + V ++R
Sbjct: 79 THKQVVDLIR 88
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
I + S+ KGG G I GD IL +N + + EA+ +L+ + + L + K
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET---VTLKIKK 88
Query: 125 CWDPNP 130
D P
Sbjct: 89 QTDAQP 94
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
D GIYV + +GG + G ++ GD I+QVN + +++D+A + L
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
IY+G I+ GA DGR+ GD ++ V+ S+ V+++++ K G + L V +
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAA-KQGHVNLTVRQ 87
Query: 125 C 125
Sbjct: 88 T 88
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
D GIYV + +GG + G ++ GD I+QVN + +++D+A + L
Sbjct: 44 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRL 89
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 39 VTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
T+ D+ LG+ +VG + G G ++ + KG + G + GD +L+ N
Sbjct: 29 TTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLP 88
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 129
+N+E ++ E +P ++++V++ P+
Sbjct: 89 GATNEEVYNIILESKSEP-QVEIIVSRPSGPS 119
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
D GIYV + +GG + G ++ GD I+QVN + +++D+A + L
Sbjct: 42 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRL 87
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 69 SIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113
+I +GG+ G+++ G +IL+VN + + EA R++ E +
Sbjct: 38 TIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFK 82
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
D GIYV + +GG + G ++ GD I+QVN + +++D+A + L
Sbjct: 63 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRL 108
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 77 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKL 120
A D + PGD+I+ +N + E M + EA +R Q P P++L
Sbjct: 39 AKDADLRPGDIIVAINGESAEGMLHAEAQSKIR---QSPSPLRL 79
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 39 VTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
VT+ LGISI G + NK I + I KG A + GD IL VN +
Sbjct: 4 VTVRKADAGGLGISIKGGRENKMP---ILISKIFKGLAADQTEALFVGDAILSVNGEDLS 60
Query: 98 NMSNDEAVRVLRE 110
+ ++DEAV+ L++
Sbjct: 61 SATHDEAVQALKK 73
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 39 VTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
VT+ LGISI G + NK I + I KG A + GD IL VN +
Sbjct: 4 VTVRKADAGGLGISIKGGRENKMP---ILISKIFKGLAADQTEALFVGDAILSVNGEDLS 60
Query: 98 NMSNDEAVRVLRE 110
+ ++DEAV+ L++
Sbjct: 61 SATHDEAVQALKK 73
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 77 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKL 120
A D + PGD+I+ +N + E M + EA +R Q P P++L
Sbjct: 38 AKDADLRPGDIIVAINGESAEGMLHAEAQSKIR---QSPSPLRL 78
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 49 LGISIVGQSNKGG------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
LG SI G G D GI+V + G + ++PGD I+Q N +F N+ +
Sbjct: 23 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 80
Query: 103 EAVRVLR 109
+AV +L+
Sbjct: 81 QAVSLLK 87
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 44 DTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
D+ LG+ +VG + + G ++ + KG G + PGD +L+ N + + +
Sbjct: 45 DSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFE 104
Query: 103 EAVRVLREVVQKPGP-IKLVVAKC 125
E ++ E KP P ++LVV++
Sbjct: 105 EVYNIILE--SKPEPQVELVVSRS 126
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 49 LGISIVGQSNKGG------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
LG SI G G D GI+V + G + ++PGD I+Q N +F N+ +
Sbjct: 15 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 72
Query: 103 EAVRVLR 109
+AV +L+
Sbjct: 73 QAVSLLK 79
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 39 VTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
VT+ LGISI G + NK I + I KG A + GD IL VN +
Sbjct: 8 VTVRKADAGGLGISIKGGRENKMP---ILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64
Query: 98 NMSNDEAVRVLRE 110
+ ++DEAV+ L++
Sbjct: 65 SATHDEAVQALKK 77
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 47 NFLGISIVGQS---NKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDE 103
N LGI IVG G+ G Y+ I+ GG+ G++ G +L+ N I + + +E
Sbjct: 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE 89
Query: 104 AVRVLREVVQKPGPIKLVV 122
+ + Q+ G ++ V
Sbjct: 90 VQSI---ISQQSGEAEICV 105
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 54 VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
+G K D GI+V + +L G + GD +LQ+N N S+D+A +VL++
Sbjct: 18 IGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQ 73
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 54 VGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
+G K D GI+V + +L G + GD +LQ+N N S+D+A +VL++
Sbjct: 18 IGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQ 73
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDIN 95
I +V + LG S+ G S G GI+V + +G + G + GD I +VN ++
Sbjct: 11 IHSVRVEKSPAGRLGFSVRGGSEHGL--GIFVSKVEEGSSAERAG-LCVGDKITEVNGLS 67
Query: 96 FENMSNDEAVRVL 108
E+ + AV+VL
Sbjct: 68 LESTTMGSAVKVL 80
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 126
++ D L +DI+++ + N+ VRV++E Q+ P L K +
Sbjct: 207 VDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLKXY 251
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2 (Magi-2)
Length = 96
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 85 GDMILQVNDINFENMSNDEAVRVLREV 111
GD+I+++N N +N+S+ E V +L++
Sbjct: 51 GDLIVEINQQNVQNLSHTEVVDILKDC 77
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 40 TLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFEN 98
T+ ++ LG+ +VG + G G ++ + KG + G + GD +L+ N
Sbjct: 30 TMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPG 89
Query: 99 MSNDEAVRVLREVVQKPGPIKLVVAK 124
+N+E ++ E +P ++++V++
Sbjct: 90 ATNEEVYNIILESKSEP-QVEIIVSR 114
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111
+ + ++ GA A DG ++PGD+++ V N + E +++L+ +
Sbjct: 51 LQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI 97
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP-IKLV 121
G + V ++ +GGA G + GD I+ +N + + EA L++ + G I LV
Sbjct: 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV 102
Query: 122 VAKCWDPNPKGY 133
VA C PK Y
Sbjct: 103 VAVC---PPKEY 111
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 61 GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
GD + V S+ GGA A+ ++ GD I++VN N S+ E V++++
Sbjct: 27 GDRIVLVQSVRPGGA-AMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKS 75
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 69 SIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+M+G G + GD IL VN+IN + S+++ V+++ + G + +V+A+
Sbjct: 29 CVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKC---SGVLHMVIAE 80
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
++ TV L F G S+ G D +YV + + G G++ GD IL++N
Sbjct: 23 MDFYTVELERGAKGF-GFSLRGGREYNMD--LYVLRLAEDGPAERSGKMRIGDEILEING 79
Query: 94 INFENMSNDEAVRVLR 109
+NM + A+ +++
Sbjct: 80 ETTKNMKHSRAIELIK 95
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
I +G+++ G+ DGR+ PGD ++ V+ I ++ + ++ + G + L V +
Sbjct: 36 ILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARN-GQVNLTVRR 94
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 39 VTLNMDTVNFLGISIV----GQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
VTL+ GI IV S GI++ I+ L GR++ GD IL +N
Sbjct: 9 VTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGK 68
Query: 95 NFENMSNDEAVRVLRE 110
+ N + + +++E
Sbjct: 69 DVRNSTEQAVIDLIKE 84
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+YV + + G +GR+ GD I+++N + +M++ A+ +++ ++ ++L++ +
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRR---VRLLLKR 94
Query: 125 CWDPNP 130
P
Sbjct: 95 GTGSGP 100
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 49 LGISIVGQSNKGGDGG---IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LGISI KGG I + I G A + GD IL VN + ++D+AV
Sbjct: 17 LGISI-----KGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAV 71
Query: 106 RVLRE 110
+ L+
Sbjct: 72 QALKR 76
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111
+ + I+KGGA G + GD +L++N I +E +L ++
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,438,152
Number of Sequences: 62578
Number of extensions: 260752
Number of successful extensions: 845
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 188
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)