Query psy1022
Match_columns 245
No_of_seqs 253 out of 1328
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:53:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3571|consensus 100.0 2.8E-80 6.1E-85 573.6 14.5 240 4-243 217-480 (626)
2 cd04438 DEP_dishevelled DEP (D 99.9 4.5E-23 9.8E-28 153.7 4.2 53 188-240 32-84 (84)
3 KOG3549|consensus 99.7 3.7E-17 8.1E-22 147.8 11.0 125 29-160 48-172 (505)
4 PF00595 PDZ: PDZ domain (Also 99.6 2E-15 4.3E-20 110.7 10.7 81 38-123 1-81 (81)
5 KOG3550|consensus 99.6 5E-15 1.1E-19 120.4 8.3 85 34-124 89-173 (207)
6 KOG3209|consensus 99.5 1.9E-13 4.1E-18 132.7 9.4 89 29-124 892-980 (984)
7 KOG0609|consensus 99.4 6.5E-13 1.4E-17 126.2 11.8 86 35-127 122-207 (542)
8 KOG3209|consensus 99.4 8.6E-13 1.9E-17 128.2 11.5 89 35-129 753-841 (984)
9 KOG3551|consensus 99.4 2.9E-12 6.2E-17 117.6 12.0 83 37-124 86-168 (506)
10 cd00992 PDZ_signaling PDZ doma 99.3 1.1E-10 2.4E-15 84.7 11.3 80 37-122 2-81 (82)
11 KOG3553|consensus 99.2 3.1E-11 6.6E-16 91.9 8.1 96 24-124 4-115 (124)
12 KOG1892|consensus 99.2 7.9E-11 1.7E-15 117.5 11.2 87 33-124 931-1018(1629)
13 smart00228 PDZ Domain present 99.2 7.2E-10 1.6E-14 80.5 11.8 82 36-124 2-83 (85)
14 KOG3580|consensus 99.1 1.5E-10 3.2E-15 111.3 8.5 88 32-124 5-96 (1027)
15 cd00136 PDZ PDZ domain, also c 99.1 5.6E-10 1.2E-14 78.9 9.5 68 48-122 2-69 (70)
16 cd04437 DEP_Epac DEP (Dishevel 99.1 4.4E-11 9.5E-16 95.4 4.0 53 188-240 33-86 (125)
17 KOG3580|consensus 99.1 1.6E-10 3.5E-15 111.0 6.6 116 33-156 405-549 (1027)
18 KOG3651|consensus 99.1 5.3E-10 1.1E-14 100.2 9.3 85 36-125 5-89 (429)
19 cd04449 DEP_DEPDC5-like DEP (D 99.0 3.1E-10 6.8E-15 84.4 3.7 46 188-233 32-77 (83)
20 KOG3605|consensus 99.0 5.6E-10 1.2E-14 108.1 5.8 91 33-125 643-734 (829)
21 cd04441 DEP_2_DEP6 DEP (Dishev 98.9 6.2E-10 1.3E-14 83.1 3.7 47 188-235 35-81 (85)
22 KOG3606|consensus 98.9 1.1E-08 2.4E-13 90.5 9.9 86 37-125 160-253 (358)
23 PF13180 PDZ_2: PDZ domain; PD 98.9 2.8E-08 6.1E-13 72.9 9.9 71 48-125 2-72 (82)
24 KOG3552|consensus 98.8 4.6E-09 1E-13 105.0 6.5 89 33-134 53-142 (1298)
25 PF00610 DEP: Domain found in 98.8 3.1E-09 6.8E-14 76.7 3.7 51 188-238 20-74 (74)
26 cd00988 PDZ_CTP_protease PDZ d 98.8 3.1E-08 6.7E-13 72.5 9.1 71 47-125 2-72 (85)
27 cd04448 DEP_PIKfyve DEP (Dishe 98.8 3.4E-09 7.3E-14 78.5 3.3 48 188-236 31-78 (81)
28 cd04371 DEP DEP domain, named 98.8 3.9E-09 8.4E-14 77.2 3.5 49 188-237 31-81 (81)
29 cd04443 DEP_GPR155 DEP (Dishev 98.7 6.9E-09 1.5E-13 77.2 3.2 47 188-235 33-79 (83)
30 smart00049 DEP Domain found in 98.7 1.6E-08 3.5E-13 73.5 4.0 51 188-239 23-76 (77)
31 cd04442 DEP_1_DEP6 DEP (Dishev 98.7 1.8E-08 3.9E-13 74.7 3.5 49 188-237 31-81 (82)
32 cd04439 DEP_1_P-Rex DEP (Dishe 98.7 2.2E-08 4.7E-13 74.2 3.6 50 188-238 31-81 (81)
33 cd04450 DEP_RGS7-like DEP (Dis 98.6 3.1E-08 6.8E-13 74.4 3.7 51 188-239 31-83 (88)
34 COG0793 Prc Periplasmic protea 98.6 1.6E-07 3.5E-12 88.8 8.1 97 45-151 98-194 (406)
35 KOG3542|consensus 98.5 2.7E-07 5.9E-12 90.3 6.6 83 35-124 535-618 (1283)
36 cd00990 PDZ_glycyl_aminopeptid 98.4 1.4E-06 3E-11 63.0 8.0 65 48-124 2-66 (80)
37 PRK11186 carboxy-terminal prot 98.4 7.4E-07 1.6E-11 88.9 7.9 89 46-141 243-336 (667)
38 cd04440 DEP_2_P-Rex DEP (Dishe 98.3 4.2E-07 9E-12 68.9 3.7 50 188-238 40-90 (93)
39 cd00991 PDZ_archaeal_metallopr 98.3 4.6E-06 9.9E-11 60.8 8.7 59 62-124 9-67 (79)
40 PLN00049 carboxyl-terminal pro 98.3 3.4E-06 7.3E-11 79.4 10.0 78 45-125 83-161 (389)
41 cd00989 PDZ_metalloprotease PD 98.3 6.5E-06 1.4E-10 59.1 8.8 58 62-124 11-68 (79)
42 TIGR00225 prc C-terminal pepti 98.2 4.2E-06 9E-11 77.0 8.6 72 46-125 50-121 (334)
43 cd04444 DEP_PLEK2 DEP (Disheve 98.2 5.3E-07 1.1E-11 70.1 2.2 41 188-229 34-74 (109)
44 cd00987 PDZ_serine_protease PD 98.1 2.3E-05 5.1E-10 57.4 8.6 59 62-124 23-81 (90)
45 cd00986 PDZ_LON_protease PDZ d 98.1 2.5E-05 5.5E-10 56.5 8.2 58 62-124 7-64 (79)
46 KOG3605|consensus 98.1 3.2E-06 6.9E-11 82.5 4.1 75 35-122 736-811 (829)
47 KOG1738|consensus 98.0 2.9E-05 6.3E-10 75.8 9.6 75 44-125 210-284 (638)
48 KOG3938|consensus 97.9 1.9E-05 4.2E-10 70.0 5.4 83 35-123 126-208 (334)
49 TIGR02037 degP_htrA_DO peripla 97.8 9.3E-05 2E-09 70.3 8.9 60 62-125 256-315 (428)
50 TIGR01713 typeII_sec_gspC gene 97.7 0.00016 3.5E-09 64.6 9.1 72 48-125 178-249 (259)
51 PRK10942 serine endoprotease; 97.7 0.00024 5.2E-09 68.6 9.5 57 63-125 408-464 (473)
52 TIGR02037 degP_htrA_DO peripla 97.6 0.00022 4.8E-09 67.7 8.5 59 63-125 362-420 (428)
53 PRK10139 serine endoprotease; 97.6 0.00032 7E-09 67.4 9.2 60 62-125 289-348 (455)
54 PRK10139 serine endoprotease; 97.6 0.00028 6E-09 67.9 8.2 57 63-125 390-446 (455)
55 TIGR02038 protease_degS peripl 97.5 0.00043 9.3E-09 64.3 7.9 59 63-125 278-336 (351)
56 PF04495 GRASP55_65: GRASP55/6 97.5 0.00078 1.7E-08 54.8 8.4 86 34-124 9-100 (138)
57 TIGR00054 RIP metalloprotease 97.4 0.00046 1E-08 65.6 8.2 58 63-125 203-260 (420)
58 PRK10898 serine endoprotease; 97.4 0.0007 1.5E-08 63.0 8.7 60 62-125 278-337 (353)
59 PRK10942 serine endoprotease; 97.4 0.00074 1.6E-08 65.3 8.6 60 62-125 310-369 (473)
60 PRK10779 zinc metallopeptidase 97.3 0.00079 1.7E-08 64.5 8.5 58 63-125 221-278 (449)
61 cd04445 DEP_PLEK1 DEP (Disheve 97.1 0.00047 1E-08 52.4 3.0 36 188-224 34-69 (99)
62 PRK10779 zinc metallopeptidase 97.1 0.001 2.2E-08 63.8 5.9 58 64-125 127-184 (449)
63 cd04446 DEP_DEPDC4 DEP (Dishev 97.1 0.00055 1.2E-08 52.1 3.2 40 188-227 30-76 (95)
64 cd04436 DEP_fRgd2 DEP (Disheve 97.0 0.00031 6.8E-09 52.1 1.8 37 188-225 32-68 (84)
65 KOG0606|consensus 96.9 0.0031 6.8E-08 65.4 8.6 81 39-124 630-715 (1205)
66 PF14685 Tricorn_PDZ: Tricorn 96.9 0.0043 9.4E-08 46.6 7.1 68 48-124 2-78 (88)
67 TIGR02860 spore_IV_B stage IV 96.8 0.0066 1.4E-07 57.4 8.9 48 73-125 123-170 (402)
68 TIGR00054 RIP metalloprotease 96.7 0.0044 9.6E-08 59.0 6.9 58 62-125 127-184 (420)
69 TIGR03279 cyano_FeS_chp putati 96.5 0.0054 1.2E-07 58.5 6.2 49 67-123 2-50 (433)
70 COG3975 Predicted protease wit 96.5 0.0034 7.4E-08 60.7 4.5 54 35-94 437-492 (558)
71 KOG3129|consensus 96.2 0.015 3.3E-07 50.3 6.7 61 62-125 138-199 (231)
72 KOG3532|consensus 95.9 0.029 6.3E-07 55.9 7.6 82 35-126 374-455 (1051)
73 COG3480 SdrC Predicted secrete 95.7 0.034 7.3E-07 51.0 6.7 64 63-131 130-193 (342)
74 PRK09681 putative type II secr 95.3 0.088 1.9E-06 47.6 8.2 53 69-125 210-265 (276)
75 COG0265 DegQ Trypsin-like seri 95.3 0.075 1.6E-06 49.0 8.1 60 62-125 269-328 (347)
76 cd04447 DEP_BRCC3 DEP (Disheve 95.0 0.018 3.9E-07 43.6 2.4 40 188-227 32-77 (92)
77 KOG1421|consensus 94.5 0.092 2E-06 52.6 6.5 57 62-124 302-358 (955)
78 KOG4371|consensus 94.5 0.049 1.1E-06 56.5 4.8 85 34-124 1244-1328(1332)
79 KOG1320|consensus 93.8 0.17 3.7E-06 48.9 6.6 58 63-124 398-455 (473)
80 KOG4371|consensus 93.5 0.14 3E-06 53.4 5.8 82 33-124 1145-1226(1332)
81 COG3031 PulC Type II secretory 92.9 0.57 1.2E-05 41.5 7.9 62 46-125 204-265 (275)
82 KOG3572|consensus 92.1 0.072 1.6E-06 56.4 1.6 46 189-234 1305-1352(1701)
83 KOG4407|consensus 89.3 0.27 5.9E-06 52.4 2.8 58 63-124 143-200 (1973)
84 PF12812 PDZ_1: PDZ-like domai 88.8 1.6 3.4E-05 31.9 5.8 45 64-111 31-75 (78)
85 KOG1945|consensus 87.5 1.4 3.1E-05 41.0 6.0 84 36-123 100-187 (377)
86 KOG0792|consensus 83.5 0.59 1.3E-05 48.9 1.6 66 46-111 715-797 (1144)
87 KOG4407|consensus 79.9 1.3 2.9E-05 47.5 2.6 75 33-109 43-140 (1973)
88 COG0750 Predicted membrane-ass 73.8 12 0.00026 34.4 7.1 54 66-124 132-188 (375)
89 KOG3834|consensus 73.7 17 0.00037 34.9 7.9 86 34-124 76-166 (462)
90 COG3512 CRISPR-associated prot 73.3 1.9 4E-05 33.2 1.2 23 202-224 20-42 (116)
91 PF10656 DUF2483: Hypothetical 70.7 0.91 2E-05 32.6 -0.9 34 203-236 33-72 (72)
92 KOG3834|consensus 70.1 8.5 0.00018 36.9 5.1 59 62-124 14-72 (462)
93 PF11874 DUF3394: Domain of un 66.0 10 0.00023 32.2 4.4 37 49-91 113-149 (183)
94 KOG1421|consensus 61.4 20 0.00043 36.7 5.9 55 62-123 861-915 (955)
95 PF11619 P53_C: Transcription 58.6 7.9 0.00017 27.4 1.9 27 192-218 26-63 (71)
96 PRK13810 orotate phosphoribosy 46.8 39 0.00084 28.6 4.8 37 79-118 116-152 (187)
97 PF03091 CutA1: CutA1 divalent 40.6 22 0.00047 27.3 2.1 20 202-221 8-27 (102)
98 PF14657 Integrase_AP2: AP2-li 40.4 24 0.00051 22.7 1.9 21 198-218 20-40 (46)
99 KOG1903|consensus 40.0 8.7 0.00019 32.2 -0.2 20 188-207 54-73 (217)
100 PF09382 RQC: RQC domain; Int 38.0 48 0.001 24.6 3.7 35 204-241 55-89 (106)
101 KOG2921|consensus 37.5 34 0.00075 32.7 3.2 48 61-110 218-265 (484)
102 PF08199 E2: Bacteriophage E2- 36.6 16 0.00034 22.4 0.6 19 220-238 13-31 (37)
103 PTZ00173 60S ribosomal protein 35.5 55 0.0012 28.5 4.0 46 79-127 126-172 (213)
104 PF05402 PqqD: Coenzyme PQQ sy 35.4 38 0.00083 23.1 2.5 33 189-221 33-67 (68)
105 TIGR01367 pyrE_Therm orotate p 34.5 93 0.002 26.2 5.2 74 82-159 102-176 (187)
106 KOG2239|consensus 33.5 44 0.00096 28.8 3.0 38 207-244 65-122 (209)
107 PRK09203 rplP 50S ribosomal pr 33.0 71 0.0015 25.8 4.0 37 72-113 87-123 (138)
108 TIGR00869 sec62 protein transl 32.3 35 0.00077 30.1 2.3 40 188-228 24-75 (232)
109 PF11360 DUF3110: Protein of u 31.3 36 0.00079 25.3 1.9 33 196-228 23-55 (86)
110 PRK10645 divalent-cation toler 31.2 39 0.00084 26.4 2.2 40 202-242 18-57 (112)
111 PF15129 FAM150: FAM150 family 30.7 12 0.00026 29.3 -0.7 22 216-237 67-88 (123)
112 PRK04199 rpl10e 50S ribosomal 30.5 90 0.002 26.3 4.4 47 74-123 118-165 (172)
113 PRK01285 pyruvoyl-dependent ar 29.9 34 0.00074 28.4 1.7 23 199-221 100-122 (155)
114 PRK05500 bifunctional orotidin 29.8 87 0.0019 30.6 4.8 39 78-119 386-424 (477)
115 cd01433 Ribosomal_L16_L10e Rib 29.5 40 0.00086 26.0 2.0 34 74-111 68-101 (112)
116 TIGR00286 arginine decarboxyla 28.4 37 0.0008 28.1 1.7 27 193-220 93-119 (152)
117 COG0461 PyrE Orotate phosphori 27.2 1.2E+02 0.0026 26.2 4.7 38 78-118 105-142 (201)
118 TIGR00279 L10e ribosomal prote 27.1 1E+02 0.0022 26.0 4.1 47 75-124 119-166 (172)
119 TIGR01164 rplP_bact ribosomal 26.9 55 0.0012 26.0 2.4 35 72-111 86-120 (126)
120 PRK13809 orotate phosphoribosy 26.7 1.2E+02 0.0026 26.1 4.6 32 80-111 113-144 (206)
121 TIGR01573 cas2 CRISPR-associat 26.5 47 0.001 24.8 1.8 18 205-222 15-32 (95)
122 TIGR01744 XPRTase xanthine pho 25.7 1.2E+02 0.0026 25.7 4.4 31 81-111 113-143 (191)
123 PRK13812 orotate phosphoribosy 25.3 1.3E+02 0.0029 25.0 4.6 33 79-111 101-133 (176)
124 TIGR00336 pyrE orotate phospho 24.2 1.3E+02 0.0029 24.7 4.4 32 80-111 103-134 (173)
125 PRK09219 xanthine phosphoribos 24.1 1.3E+02 0.0027 25.5 4.2 31 81-111 113-143 (189)
126 PLN02293 adenine phosphoribosy 24.0 1.4E+02 0.0031 25.2 4.5 32 80-111 120-151 (187)
127 smart00815 AMA-1 Apical membra 23.8 1.5E+02 0.0033 26.3 4.7 63 159-236 72-138 (240)
128 TIGR03859 PQQ_PqqD coenzyme PQ 23.6 80 0.0017 22.8 2.6 33 189-222 47-81 (81)
129 smart00418 HTH_ARSR helix_turn 23.3 1.2E+02 0.0027 19.2 3.3 34 203-240 22-55 (66)
130 COG4876 Uncharacterized protei 23.1 63 0.0014 25.5 2.0 20 203-222 18-37 (138)
131 PF01455 HupF_HypC: HupF/HypC 23.1 1E+02 0.0022 21.8 2.9 28 82-109 38-65 (68)
132 KOG0404|consensus 22.7 35 0.00076 30.6 0.6 40 188-241 69-108 (322)
133 cd07377 WHTH_GntR Winged helix 22.6 1E+02 0.0022 20.2 2.8 30 195-226 31-60 (66)
134 PF02563 Poly_export: Polysacc 22.6 74 0.0016 22.8 2.2 23 91-113 46-68 (82)
135 COG0197 RplP Ribosomal protein 21.9 79 0.0017 26.0 2.4 36 73-113 91-126 (146)
136 COG4496 Uncharacterized protei 21.5 13 0.00029 28.0 -1.9 16 228-243 21-36 (100)
137 PF08820 DUF1803: Domain of un 21.2 85 0.0018 23.8 2.3 35 189-223 16-59 (93)
138 TIGR01765 tspaseT_teng_N trans 21.0 42 0.00091 23.7 0.6 30 205-237 23-54 (73)
139 PF08599 Nbs1_C: DNA damage re 20.6 75 0.0016 22.4 1.7 28 189-216 36-63 (65)
140 PF07647 SAM_2: SAM domain (St 20.5 46 0.001 22.4 0.7 24 189-220 7-30 (66)
141 PF01862 PvlArgDC: Pyruvoyl-de 20.3 48 0.001 27.7 0.9 31 190-221 94-125 (164)
142 CHL00044 rpl16 ribosomal prote 20.0 68 0.0015 25.8 1.7 35 72-111 87-121 (135)
No 1
>KOG3571|consensus
Probab=100.00 E-value=2.8e-80 Score=573.58 Aligned_cols=240 Identities=71% Similarity=1.142 Sum_probs=215.5
Q ss_pred ccccccccCCCCCC-CCCCCCCCCCCCCCCceeeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCC
Q psy1022 4 RRRPQRRRRHRPPA-LSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRI 82 (245)
Q Consensus 4 ~~~~~~r~~~r~~~-~~~~ss~ss~~~s~~~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L 82 (245)
+|+||||||+|+|+ ++++|||||+++++|+++|++|+|+++..++|||+|+|+.+..+++||||.+|++||++++||+|
T Consensus 217 ~r~K~rrrkkR~p~~~sr~SSfSSiTdSsmslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRI 296 (626)
T KOG3571|consen 217 RRKKRRRRKKRRPRVPSRASSFSSITDSSMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRI 296 (626)
T ss_pred HHHHHhhhhhcCCCccccccccccccccccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCcc
Confidence 57788999999998 89999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEecCCCCCCCCcccCCCCCcCcCCCCCcccccccccCC--
Q psy1022 83 EPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRGD-- 160 (245)
Q Consensus 83 ~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~~~~~~~~~~~~~r~~p~~p~d~~~~~~~~~~~~~~-- 160 (245)
.+||+||+||.++|++|++++||++||++++++++|+|+|++||||++.++|++||++|++||||++|+.|+++++|.
T Consensus 297 e~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q~~fTipr~epvrPIDp~awv~ht~a~tg~~p 376 (626)
T KOG3571|consen 297 EPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQSYFTIPRGEPVRPIDPAAWVSHTQALTGAPP 376 (626)
T ss_pred CccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCcccccCCCCCcCCcCCHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCC-CCCC-----------CCccccCCCCC--------cccccCCC-cchhhhhhhhhcccchhhHHHHHHHHHHhhcc
Q psy1022 161 GFPL-RPPS-----------VSTLTSTSSSL--------TSSIAETE-SADVVDWLDKHVEGFTDRREARKYASQMLKFG 219 (245)
Q Consensus 161 ~~~~-~~p~-----------~~~~~~t~~~~--------~~~~p~~~-~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~ 219 (245)
.|+. .-+- ...|+.+.|.+ .-.||.+. ++||||||++|||||+|||||||||+.|||+|
T Consensus 377 a~~~~~e~~~~~~~~d~~~vvraMa~pdSGLeirdRmWlKItIPnafiGsDlVdWL~~hVeg~~~RkeAR~yAs~lLk~g 456 (626)
T KOG3571|consen 377 AIIEQNEKIELLTEMDMIIVVRAMARPDSGLEIRDRMWLKITIPNAFIGSDLVDWLVDHVEGLHERKEARKYASRLLKAG 456 (626)
T ss_pred cchhccccchhcccccHHHHHHhhcCCCCcceeccceeeeeecchhhcchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhC
Confidence 1210 0000 01222333332 12356654 79999999999999999999999999999999
Q ss_pred ceeecccccccccceeeeeccccc
Q psy1022 220 YIRHTVNKITFSEQCYYIFGDLLQ 243 (245)
Q Consensus 220 ~i~h~~~k~~f~e~cyy~~~~~~~ 243 (245)
||||||||+||||||||||||+|+
T Consensus 457 ~IrHtVnK~TFtEqCYYVfGD~c~ 480 (626)
T KOG3571|consen 457 YIRHTVNKLTFTEQCYYVFGDECS 480 (626)
T ss_pred chhhcccceeeeeeeEEEeccccc
Confidence 999999999999999999999998
No 2
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=99.87 E-value=4.5e-23 Score=153.67 Aligned_cols=53 Identities=81% Similarity=1.379 Sum_probs=52.5
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccccccceeeeecc
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQCYYIFGD 240 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~cyy~~~~ 240 (245)
|+|+|+||.+|++++.+|.||.+||..||+.|||+|++||.+|+|||||||||
T Consensus 32 GsdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV~~~h~F~d~~yy~~~~ 84 (84)
T cd04438 32 GSDLVDWLLSHVEGLTDRREARKYASSLLKLGYIRHTVNKITFSEQCYYVFGD 84 (84)
T ss_pred chHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCcEEecCCCccccCCeEEecCC
Confidence 79999999999999999999999999999999999999999999999999998
No 3
>KOG3549|consensus
Probab=99.72 E-value=3.7e-17 Score=147.78 Aligned_cols=125 Identities=26% Similarity=0.337 Sum_probs=104.1
Q ss_pred CCCCceeeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHH
Q psy1022 29 DSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108 (245)
Q Consensus 29 ~s~~~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~L 108 (245)
.+.|..+.++|+|.+++.+|||++|+||.+ .+-+|+|++|.+.-+|+..|.|.+||-|++|||+.+++++|+|+|++|
T Consensus 48 G~p~~s~eRtVtirRQ~vGGlGLSIKGGaE--Hn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iL 125 (505)
T KOG3549|consen 48 GPPMESKERTVTIRRQKVGGLGLSIKGGAE--HNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNIL 125 (505)
T ss_pred CCCccCCceeEEEEeeecCcceeeeccccc--cCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHH
Confidence 455677889999999999999999999987 589999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcEEEEEEecCCCCCCCCcccCCCCCcCcCCCCCcccccccccCC
Q psy1022 109 REVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRGD 160 (245)
Q Consensus 109 r~~~~~~~~V~L~V~r~~~~~~~~~~~~~r~~p~~p~d~~~~~~~~~~~~~~ 160 (245)
|++ ++.|+|+|.. -...+.++.+|-.++..+.|-....+.+-+-.|.
T Consensus 126 RNA---GdeVtlTV~~--lr~ApaFLklpL~~~~p~SD~ssg~sspl~DsGl 172 (505)
T KOG3549|consen 126 RNA---GDEVTLTVKH--LRAAPAFLKLPLTKDTPDSDNSSGCSSPLADSGL 172 (505)
T ss_pred Hhc---CCEEEEEeHh--hhcCcHHhcCccCCCCCCccccccccccccccce
Confidence 999 9999999975 2334457777777777666655444444333343
No 4
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.64 E-value=2e-15 Score=110.70 Aligned_cols=81 Identities=32% Similarity=0.589 Sum_probs=72.8
Q ss_pred EEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCc
Q psy1022 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP 117 (245)
Q Consensus 38 ~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~ 117 (245)
+|.|.++...+|||.+.++.+. ...++||..|.++|+|+++| |++||+|++|||+++.++++++++.+|+.+ ...
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~-~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~---~~~ 75 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDN-DEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA---SNP 75 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTS-SSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS---TSE
T ss_pred CEEEEeCCCCCcCEEEEecCCC-CcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC---CCc
Confidence 4788887889999999998751 12699999999999999999 999999999999999999999999999998 678
Q ss_pred EEEEEE
Q psy1022 118 IKLVVA 123 (245)
Q Consensus 118 V~L~V~ 123 (245)
|+|+|.
T Consensus 76 v~L~V~ 81 (81)
T PF00595_consen 76 VTLTVQ 81 (81)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999874
No 5
>KOG3550|consensus
Probab=99.58 E-value=5e-15 Score=120.39 Aligned_cols=85 Identities=29% Similarity=0.501 Sum_probs=77.8
Q ss_pred eeeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccC
Q psy1022 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (245)
Q Consensus 34 ~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~ 113 (245)
...+.|.|.|. .+||||.|.||++ .+.+|||++|+|||.|++.|.|+-||+++.|||+++++-.|+.|+++|+.+
T Consensus 89 ahprvvelpkt-deglgfnvmggke--qnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa-- 163 (207)
T KOG3550|consen 89 AHPRVVELPKT-DEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA-- 163 (207)
T ss_pred CCCceeecCcc-ccccceeeccCcc--cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh--
Confidence 45577888654 5999999999997 489999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEe
Q psy1022 114 KPGPIKLVVAK 124 (245)
Q Consensus 114 ~~~~V~L~V~r 124 (245)
.++|.|+|..
T Consensus 164 -~gsvklvvry 173 (207)
T KOG3550|consen 164 -VGSVKLVVRY 173 (207)
T ss_pred -cCcEEEEEec
Confidence 8999999975
No 6
>KOG3209|consensus
Probab=99.46 E-value=1.9e-13 Score=132.68 Aligned_cols=89 Identities=25% Similarity=0.396 Sum_probs=79.6
Q ss_pred CCCCceeeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHH
Q psy1022 29 DSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108 (245)
Q Consensus 29 ~s~~~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~L 108 (245)
..+|..+.++|.|.++. .||||+|+||.. ++.++||-++.++|||.++|++++||+|++|||++..+|+|+.|+++|
T Consensus 892 r~~qn~~~~~VelErG~-kGFGFSiRGGre--ynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelI 968 (984)
T KOG3209|consen 892 RMSQNGDLYTVELERGA-KGFGFSIRGGRE--YNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELI 968 (984)
T ss_pred cccccCCeeEEEeeccc-cccceEeecccc--cccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHH
Confidence 35788899999999887 899999999975 789999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcEEEEEEe
Q psy1022 109 REVVQKPGPIKLVVAK 124 (245)
Q Consensus 109 r~~~~~~~~V~L~V~r 124 (245)
|+- +...|++.+
T Consensus 969 k~g----g~~vll~Lr 980 (984)
T KOG3209|consen 969 KQG----GRRVLLLLR 980 (984)
T ss_pred HhC----CeEEEEEec
Confidence 984 555555444
No 7
>KOG0609|consensus
Probab=99.45 E-value=6.5e-13 Score=126.18 Aligned_cols=86 Identities=30% Similarity=0.435 Sum_probs=78.4
Q ss_pred eeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCC
Q psy1022 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (245)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~ 114 (245)
.++.|.|.|..+..||.+|+... ...++|.+|+.||.|++.|.|++||+|++|||+++.+...++++.+|+.+
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e----~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~--- 194 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEE----DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNS--- 194 (542)
T ss_pred eeEEEEEeecCCCccceEEEecc----CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhC---
Confidence 56778888888899999999853 33799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecCC
Q psy1022 115 PGPIKLVVAKCWD 127 (245)
Q Consensus 115 ~~~V~L~V~r~~~ 127 (245)
.|.|+++|.+.+.
T Consensus 195 ~G~itfkiiP~~~ 207 (542)
T KOG0609|consen 195 RGSITFKIIPSYR 207 (542)
T ss_pred CCcEEEEEccccc
Confidence 7999999997665
No 8
>KOG3209|consensus
Probab=99.43 E-value=8.6e-13 Score=128.21 Aligned_cols=89 Identities=24% Similarity=0.380 Sum_probs=78.9
Q ss_pred eeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCC
Q psy1022 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (245)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~ 114 (245)
....|.|.++.++||||.|....++++.+ |.+|++|+||+++|+|.+||+|++|||+++.+++|.+.|++||++
T Consensus 753 ~~yDV~lhR~ENeGFGFVi~sS~~kp~sg---iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKda--- 826 (984)
T KOG3209|consen 753 GPYDVVLHRKENEGFGFVIMSSQNKPESG---IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDA--- 826 (984)
T ss_pred CCeeeEEecccCCceeEEEEecccCCCCC---ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhc---
Confidence 36889999999999999999877642222 999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecCCCC
Q psy1022 115 PGPIKLVVAKCWDPN 129 (245)
Q Consensus 115 ~~~V~L~V~r~~~~~ 129 (245)
+-.|+|+|.......
T Consensus 827 GlsVtLtIip~ee~~ 841 (984)
T KOG3209|consen 827 GLSVTLTIIPPEEAG 841 (984)
T ss_pred CceEEEEEcChhccC
Confidence 889999999754443
No 9
>KOG3551|consensus
Probab=99.39 E-value=2.9e-12 Score=117.60 Aligned_cols=83 Identities=31% Similarity=0.378 Sum_probs=77.4
Q ss_pred EEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCC
Q psy1022 37 ITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG 116 (245)
Q Consensus 37 ~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~ 116 (245)
+.|++.|...+||||+|+||.+ ...+|+|++|.+|-+|++.+.|..||.|+.|||.++.+.+|+|||+.||.+ +.
T Consensus 86 R~V~V~K~d~gGLGISIKGGre--NkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra---Gk 160 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRE--NKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA---GK 160 (506)
T ss_pred ceeEEEEecCCcceEEeecCcc--cCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh---Cc
Confidence 7788888888999999999986 589999999999999999999999999999999999999999999999998 78
Q ss_pred cEEEEEEe
Q psy1022 117 PIKLVVAK 124 (245)
Q Consensus 117 ~V~L~V~r 124 (245)
.|.|.|+.
T Consensus 161 eV~levKy 168 (506)
T KOG3551|consen 161 EVLLEVKY 168 (506)
T ss_pred eeeeeeee
Confidence 88888764
No 10
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.25 E-value=1.1e-10 Score=84.72 Aligned_cols=80 Identities=36% Similarity=0.601 Sum_probs=68.6
Q ss_pred EEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCC
Q psy1022 37 ITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG 116 (245)
Q Consensus 37 ~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~ 116 (245)
+.+.+.+....+|||.+.+..+ ...+++|..|.++++|+..| |++||+|++|||..+.+++++++...|+.. ..
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~--~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~---~~ 75 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKD--SGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNS---GD 75 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCccc--CCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhC---CC
Confidence 5677877767889999998643 14789999999999999977 999999999999999999999999999986 55
Q ss_pred cEEEEE
Q psy1022 117 PIKLVV 122 (245)
Q Consensus 117 ~V~L~V 122 (245)
.++|++
T Consensus 76 ~v~l~v 81 (82)
T cd00992 76 EVTLTV 81 (82)
T ss_pred eEEEEE
Confidence 777765
No 11
>KOG3553|consensus
Probab=99.25 E-value=3.1e-11 Score=91.88 Aligned_cols=96 Identities=29% Similarity=0.449 Sum_probs=75.8
Q ss_pred CCCCCCCCCceeeEEEEEEcCCC---C-----cccEEEEcccCC--------CCCCCEEEEeecCCChhhhcCCCCCCCE
Q psy1022 24 FSSITDSSMSLNIITVTLNMDTV---N-----FLGISIVGQSNK--------GGDGGIYVGSIMKGGAVALDGRIEPGDM 87 (245)
Q Consensus 24 ~ss~~~s~~~~~i~~V~L~k~~~---~-----~LG~sI~gg~~~--------~~~~gi~I~~V~~Gg~A~~~G~L~~GD~ 87 (245)
++.++...+..-.+.|+|.|... + -+||.|-||.++ -.+.||||.+|.+||||+.+| |+.+|.
T Consensus 4 ~~h~pG~aveclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDK 82 (124)
T KOG3553|consen 4 MSHIPGQAVECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDK 82 (124)
T ss_pred cccCCCCceEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecce
Confidence 45556555555556677775431 2 279999998765 356799999999999999999 999999
Q ss_pred EEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 88 ILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 88 Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
||+|||-+|.-++|++|+..|+.. ..+.|.|+|
T Consensus 83 IlQvNG~DfTMvTHd~Avk~i~k~----~vl~mLVaR 115 (124)
T KOG3553|consen 83 ILQVNGWDFTMVTHDQAVKRITKE----EVLRMLVAR 115 (124)
T ss_pred EEEecCceeEEEEhHHHHHHhhHh----HHHHHHHHh
Confidence 999999999999999999999873 456666665
No 12
>KOG1892|consensus
Probab=99.21 E-value=7.9e-11 Score=117.54 Aligned_cols=87 Identities=39% Similarity=0.592 Sum_probs=77.7
Q ss_pred ceeeEEEEEEcCCCCcccEEEEcccCC-CCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 33 SLNIITVTLNMDTVNFLGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 33 ~~~i~~V~L~k~~~~~LG~sI~gg~~~-~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
..++++|+|.|. +|+|++|+..++. ....||||.+|.+||+|+.||+|..||+||.|||.++-|++-+.|.+++-..
T Consensus 931 ~pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen 931 EPEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred CCceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence 368999999775 7899988875543 3468999999999999999999999999999999999999999999999987
Q ss_pred cCCCCcEEEEEEe
Q psy1022 112 VQKPGPIKLVVAK 124 (245)
Q Consensus 112 ~~~~~~V~L~V~r 124 (245)
+..|.|.|++
T Consensus 1009 ---g~vV~leVaK 1018 (1629)
T KOG1892|consen 1009 ---GNVVHLEVAK 1018 (1629)
T ss_pred ---CCeEEEehhh
Confidence 7889999987
No 13
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.16 E-value=7.2e-10 Score=80.48 Aligned_cols=82 Identities=34% Similarity=0.548 Sum_probs=70.4
Q ss_pred eEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCC
Q psy1022 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP 115 (245)
Q Consensus 36 i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~ 115 (245)
...+.+.+.. ..|||.+..... ...+++|..|.++++|++.| |++||+|++|||+.+.++++.+.+..++.. +
T Consensus 2 ~~~~~~~~~~-~~~G~~~~~~~~--~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~---~ 74 (85)
T smart00228 2 PRLVELEKGG-GGLGFSLVGGKD--EGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKA---G 74 (85)
T ss_pred cEEEEEEECC-CcccEEEECCCC--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC---C
Confidence 3567777776 789999987542 12789999999999999999 999999999999999999999999999886 5
Q ss_pred CcEEEEEEe
Q psy1022 116 GPIKLVVAK 124 (245)
Q Consensus 116 ~~V~L~V~r 124 (245)
..+.|++.+
T Consensus 75 ~~~~l~i~r 83 (85)
T smart00228 75 GKVTLTVLR 83 (85)
T ss_pred CeEEEEEEe
Confidence 688888876
No 14
>KOG3580|consensus
Probab=99.13 E-value=1.5e-10 Score=111.31 Aligned_cols=88 Identities=27% Similarity=0.444 Sum_probs=79.4
Q ss_pred CceeeEEEEEEcCCCCcccEEEEcccCC----CCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHH
Q psy1022 32 MSLNIITVTLNMDTVNFLGISIVGQSNK----GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107 (245)
Q Consensus 32 ~~~~i~~V~L~k~~~~~LG~sI~gg~~~----~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~ 107 (245)
.-|+-++|+|.|++..||||.|.||.+. ++...|+|+.|.+||||+ |+|+.||+|+.|||+++++..|.-|++.
T Consensus 5 ~IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQq 82 (1027)
T KOG3580|consen 5 LIWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQ 82 (1027)
T ss_pred hhhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHH
Confidence 3478899999999999999999999876 455689999999999975 8999999999999999999999999999
Q ss_pred HHhccCCCCcEEEEEEe
Q psy1022 108 LREVVQKPGPIKLVVAK 124 (245)
Q Consensus 108 Lr~~~~~~~~V~L~V~r 124 (245)
||.+ +....++|.+
T Consensus 83 Lrks---gK~A~ItvkR 96 (1027)
T KOG3580|consen 83 LRKS---GKVAAITVKR 96 (1027)
T ss_pred HHhh---ccceeEEecc
Confidence 9998 7777888876
No 15
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.13 E-value=5.6e-10 Score=78.89 Aligned_cols=68 Identities=32% Similarity=0.561 Sum_probs=60.1
Q ss_pred cccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEE
Q psy1022 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122 (245)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V 122 (245)
+|||.+.+.. +.+++|..|.+++||+..| |++||+|++|||.++.+++++++.++|+... +..++|++
T Consensus 2 ~~G~~~~~~~----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~--g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGT----EGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV--GEKVTLTV 69 (70)
T ss_pred CccEEEecCC----CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC--CCeEEEEE
Confidence 5899998853 2589999999999999987 9999999999999999999999999999872 46788876
No 16
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=99.12 E-value=4.4e-11 Score=95.36 Aligned_cols=53 Identities=25% Similarity=0.499 Sum_probs=49.9
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccccccce-eeeecc
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQC-YYIFGD 240 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~c-yy~~~~ 240 (245)
|+|+||||.+|.+++.+|.+|..|+..||..|+|.|+.++-.|.++| ||-|-+
T Consensus 33 GsElVdWLl~~~~~v~sR~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF~~ 86 (125)
T cd04437 33 GTELVDWLLQQSPCVQSRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRFSD 86 (125)
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEECC
Confidence 69999999999999999999999999999999999999999999998 776743
No 17
>KOG3580|consensus
Probab=99.08 E-value=1.6e-10 Score=111.03 Aligned_cols=116 Identities=28% Similarity=0.490 Sum_probs=96.5
Q ss_pred ceeeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhcc
Q psy1022 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 112 (245)
Q Consensus 33 ~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~ 112 (245)
+.+.+.|.+.| +..+|+.+.||. +-||||..|.+|++|+..| |+.||+||+||.++|.++..++||..|-+..
T Consensus 405 sP~tk~VrF~K--GdSvGLRLAGGN----DVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lP 477 (1027)
T KOG3580|consen 405 SPNTKMVRFKK--GDSVGLRLAGGN----DVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELP 477 (1027)
T ss_pred CCCceeEEeec--CCeeeeEeccCC----ceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCC
Confidence 35778888855 457999999975 7999999999999999999 9999999999999999999999999998873
Q ss_pred CCCCcEEEEEEe-----------------------cCCCCCCCCcccCCCCCcCcCCC------CCccccccc
Q psy1022 113 QKPGPIKLVVAK-----------------------CWDPNPKGYFTIPRTEPVRPIDP------GAWVAHTAA 156 (245)
Q Consensus 113 ~~~~~V~L~V~r-----------------------~~~~~~~~~~~~~r~~p~~p~d~------~~~~~~~~~ 156 (245)
++..++|+.++ ..++.++..+.+++.+.++.+|+ ++|++.+.-
T Consensus 478 -kGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG 549 (1027)
T KOG3580|consen 478 -KGEEVTILAQSKADVYRDIVASGVGDSFYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIG 549 (1027)
T ss_pred -CCcEEeehhhhhhHHHHHHHhccCCceeEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeec
Confidence 35567665433 34556667788899999999998 889887643
No 18
>KOG3651|consensus
Probab=99.08 E-value=5.3e-10 Score=100.17 Aligned_cols=85 Identities=29% Similarity=0.380 Sum_probs=78.4
Q ss_pred eEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCC
Q psy1022 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP 115 (245)
Q Consensus 36 i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~ 115 (245)
.-+|.|+|+..+-+||+|-||. +..+.+||.+|..+.||+++|+|+.||+|+.|||+++.|.+..++.++++.+ .
T Consensus 5 ~~~v~ltKD~~nliGISIGGGa--pyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~---~ 79 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGA--PYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS---L 79 (429)
T ss_pred cCcEEEeeccccceeEEecCCC--CcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh---c
Confidence 4578999999888999999987 4789999999999999999999999999999999999999999999999998 7
Q ss_pred CcEEEEEEec
Q psy1022 116 GPIKLVVAKC 125 (245)
Q Consensus 116 ~~V~L~V~r~ 125 (245)
++|++++.+-
T Consensus 80 ~eV~IhyNKL 89 (429)
T KOG3651|consen 80 NEVKIHYNKL 89 (429)
T ss_pred cceEEEehhc
Confidence 8899998763
No 19
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=98.99 E-value=3.1e-10 Score=84.39 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=44.6
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccccccc
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQ 233 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~ 233 (245)
++|+||||.+|+++..+|.||..|+..||..|||+|+.++..|.+.
T Consensus 32 G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~I~hv~~~~~F~d~ 77 (83)
T cd04449 32 GSEAVSWLINNFEDVDTREEAVELGQELMNEGLIEHVSGRHPFLDG 77 (83)
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCEEecCCCCCccCC
Confidence 6999999999999999999999999999999999999999999876
No 20
>KOG3605|consensus
Probab=98.98 E-value=5.6e-10 Score=108.05 Aligned_cols=91 Identities=21% Similarity=0.372 Sum_probs=81.7
Q ss_pred ceeeEEEEEEcCCCCcccEEEEc-ccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 33 SLNIITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 33 ~~~i~~V~L~k~~~~~LG~sI~g-g~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
..+.++|.|.|..++.||+.|+. ||+ +.-.-++|...++||||+++|.|..||+|+.|||.++.+++...++.+||+.
T Consensus 643 kE~qKEVvv~K~kGEiLGVViVESGWG-SmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~ 721 (829)
T KOG3605|consen 643 KENQKEVVLEKHKGEILGVVIVESGWG-SILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL 721 (829)
T ss_pred hcccceeeeecccCceeeEEEEecCcc-ccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence 45789999999999999998876 565 3446788999999999999999999999999999999999999999999998
Q ss_pred cCCCCcEEEEEEec
Q psy1022 112 VQKPGPIKLVVAKC 125 (245)
Q Consensus 112 ~~~~~~V~L~V~r~ 125 (245)
++ +..|+|+|++|
T Consensus 722 Kn-QT~VkltiV~c 734 (829)
T KOG3605|consen 722 KN-QTAVKLNIVSC 734 (829)
T ss_pred cc-cceEEEEEecC
Confidence 76 68899999987
No 21
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=98.94 E-value=6.2e-10 Score=83.08 Aligned_cols=47 Identities=30% Similarity=0.519 Sum_probs=43.5
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeeccccccccccee
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQCY 235 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~cy 235 (245)
|+|+||||.+|. .+.+|.||.+|+..||+.|+|+|+.++-.|....|
T Consensus 35 GsElVdWL~~~~-~~~sR~eAv~lgq~Ll~~gii~HV~~~h~F~D~~~ 81 (85)
T cd04441 35 GSEFIDWLLQEG-EAESRREAVQLCRRLLEHGIIQHVSNKHHFFDSNL 81 (85)
T ss_pred chHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCe
Confidence 699999999997 48999999999999999999999999999987643
No 22
>KOG3606|consensus
Probab=98.88 E-value=1.1e-08 Score=90.47 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=72.3
Q ss_pred EEEEEEcCC-CCcccEEEEcccCC-------CCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHH
Q psy1022 37 ITVTLNMDT-VNFLGISIVGQSNK-------GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108 (245)
Q Consensus 37 ~~V~L~k~~-~~~LG~sI~gg~~~-------~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~L 108 (245)
+.|.|.|.. ..+|||.|+.|..- ....||||+++.+||.|+-.|.|-+.|+||+|||+.+.+.+.+++-.++
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 456666543 46799999987532 3468999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcEEEEEEec
Q psy1022 109 REVVQKPGPIKLVVAKC 125 (245)
Q Consensus 109 r~~~~~~~~V~L~V~r~ 125 (245)
-.. ...+.++|.+.
T Consensus 240 vAN---shNLIiTVkPA 253 (358)
T KOG3606|consen 240 VAN---SHNLIITVKPA 253 (358)
T ss_pred hhc---ccceEEEeccc
Confidence 776 67788888764
No 23
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.86 E-value=2.8e-08 Score=72.91 Aligned_cols=71 Identities=30% Similarity=0.537 Sum_probs=57.8
Q ss_pred cccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
+||+.+....+ ..+++|..|.++|||+++| |++||.|++|||..+. +..+....|... ..+..++|+|.|.
T Consensus 2 ~lGv~~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~-~~g~~v~l~v~R~ 72 (82)
T PF13180_consen 2 GLGVTVQNLSD---TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKG-KPGDTVTLTVLRD 72 (82)
T ss_dssp E-SEEEEECSC---SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCS-STTSEEEEEEEET
T ss_pred EECeEEEEccC---CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhC-CCCCEEEEEEEEC
Confidence 58888887532 4699999999999999999 9999999999999995 467888888643 3477899999983
No 24
>KOG3552|consensus
Probab=98.84 E-value=4.6e-09 Score=104.95 Aligned_cols=89 Identities=27% Similarity=0.514 Sum_probs=75.7
Q ss_pred ceeeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhcc
Q psy1022 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 112 (245)
Q Consensus 33 ~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~ 112 (245)
.++.+.|.+.+.. .|||.++. ..+++|..|.+|||+. |.|.+||+|++|||.++++.+.+.+++++|.|
T Consensus 53 ~~~pr~vq~~r~~--~lGFgfva------grPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRac- 121 (1298)
T KOG3552|consen 53 RWEPRQVQLQRNA--SLGFGFVA------GRPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRAC- 121 (1298)
T ss_pred cCcchhhhhhccc--cccceeec------CCceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHH-
Confidence 3467778887655 56666665 3789999999999965 89999999999999999999999999999999
Q ss_pred CCCCcEEEEEEe-cCCCCCCCCc
Q psy1022 113 QKPGPIKLVVAK-CWDPNPKGYF 134 (245)
Q Consensus 113 ~~~~~V~L~V~r-~~~~~~~~~~ 134 (245)
...|.|+|++ |.-+.|++.|
T Consensus 122 --e~sv~ltV~qPc~~p~pKStf 142 (1298)
T KOG3552|consen 122 --ESSVNLTVCQPCVLPGPKSTF 142 (1298)
T ss_pred --hhhcceEEeccccCCCchhhh
Confidence 8899999988 7788777655
No 25
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=98.83 E-value=3.1e-09 Score=76.68 Aligned_cols=51 Identities=35% Similarity=0.729 Sum_probs=46.5
Q ss_pred cchhhhhhhhhccc-chhhHHHHHHHHHHhhccceeeccccc-ccccc--eeeee
Q psy1022 188 SADVVDWLDKHVEG-FTDRREARKYASQMLKFGYIRHTVNKI-TFSEQ--CYYIF 238 (245)
Q Consensus 188 ~~d~v~wl~~~v~g-~~~r~~a~~~a~~~l~~~~i~h~~~k~-~f~e~--cyy~~ 238 (245)
++|+|+||.++++| ..+|.||..+|..||++|||.|+-++. .|... .||-|
T Consensus 20 G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~g~i~~v~~~~~~F~d~~~~~Yrf 74 (74)
T PF00610_consen 20 GSEAVDWLMDNFEGFVRDREEAVQLGQELLDHGFIEHVSDKSKQFKDSKNSLYRF 74 (74)
T ss_dssp HHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHCTSEEESSSSSHSS-SSSSSEEEE
T ss_pred hHHHHHHHHHhccccccCHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCcEEEC
Confidence 58999999999998 899999999999999999999999999 68766 88876
No 26
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.82 E-value=3.1e-08 Score=72.53 Aligned_cols=71 Identities=24% Similarity=0.510 Sum_probs=60.7
Q ss_pred CcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 47 NFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 47 ~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.+||+.+... ..+++|..|.++++|++.| |++||.|++|||..+.+++++++...++.. .+..+.|++.+.
T Consensus 2 ~~lG~~~~~~-----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~--~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD-----DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGK--AGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc-----CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCC--CCCEEEEEEEcC
Confidence 4689988652 5789999999999999998 999999999999999999889999988764 256788988863
No 27
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=98.80 E-value=3.4e-09 Score=78.54 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=43.7
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccccccceee
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQCYY 236 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~cyy 236 (245)
|+|+||||.++. ...+|.||-.+|..||.+|||+|+.++-.|..+.||
T Consensus 31 GselVdWL~~~~-~~~~R~eAv~~gq~Ll~~g~i~hV~~~~~F~D~~~~ 78 (81)
T cd04448 31 GKELVNWLIRQG-KAATRVQAIAIGQALLDAGWIECVSDDDLFRDEYAL 78 (81)
T ss_pred hHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCEEecCCCCccccCccc
Confidence 699999999983 369999999999999999999999999999998654
No 28
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=98.80 E-value=3.9e-09 Score=77.19 Aligned_cols=49 Identities=35% Similarity=0.636 Sum_probs=46.0
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeeccc-ccccccc-eeee
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVN-KITFSEQ-CYYI 237 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~-k~~f~e~-cyy~ 237 (245)
++|+|+||.++.+. .+|.||.+++..||+.|||+|+.+ +.+|... +||.
T Consensus 31 G~e~v~WL~~~~~~-~~r~ea~~~~~~ll~~g~i~~v~~~~~~F~d~~~~Y~ 81 (81)
T cd04371 31 GSELVDWLLDNLEA-ITREEAVELGQALLKHGLIHHVSDDKHTFRDSYALYR 81 (81)
T ss_pred cHHHHHHHHHhCCC-CCHHHHHHHHHHHHHCCCEEEeCCCCCccccCCeecC
Confidence 69999999999877 999999999999999999999999 9999999 8773
No 29
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=98.74 E-value=6.9e-09 Score=77.20 Aligned_cols=47 Identities=30% Similarity=0.480 Sum_probs=43.1
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeeccccccccccee
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQCY 235 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~cy 235 (245)
|+|+||||.++ ....+|.||-.||..||++|||.|+.++..|-++-+
T Consensus 33 GselVdWL~~~-~~~~sR~eAv~lg~~Ll~~G~i~HV~~~~~F~D~~~ 79 (83)
T cd04443 33 GCDLVSWLIEV-GLAQDRGEAVLYGRRLLQGGVLQHITNEHHFRDENL 79 (83)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCEEecCCCcCEecCCe
Confidence 69999999985 668999999999999999999999999999998853
No 30
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=98.70 E-value=1.6e-08 Score=73.47 Aligned_cols=51 Identities=37% Similarity=0.648 Sum_probs=47.5
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecc--ccccccc-ceeeeec
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTV--NKITFSE-QCYYIFG 239 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~--~k~~f~e-~cyy~~~ 239 (245)
++|+|+||.++.. ..+|.||..++..||.+|||.|+. ++.+|.. .|+|-|.
T Consensus 23 G~e~v~wL~~~~~-~~~r~eA~~l~~~ll~~g~i~~v~~~~~~~F~d~~~~Yrf~ 76 (77)
T smart00049 23 GSELVDWLMDNLE-IIDREEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKALYRFT 76 (77)
T ss_pred cHHHHHHHHHcCC-cCCHHHHHHHHHHHHHCCCEEEeCCCCcCccccCCEEEEeC
Confidence 6999999999986 789999999999999999999999 7889998 9999885
No 31
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=98.66 E-value=1.8e-08 Score=74.75 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=42.5
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeeccccc-ccccce-eee
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKI-TFSEQC-YYI 237 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~-~f~e~c-yy~ 237 (245)
|+|+||||.++.+. .+|.||..|+..||+.|+|+|+.++- .|-... ||-
T Consensus 31 GselVdWL~~~~~~-~sR~eAv~lgq~Ll~~gvi~HV~~~h~~F~D~~~fYr 81 (82)
T cd04442 31 GKELIDWLIEHKEA-SDRETAIKIMQKLLDHSIIHHVCDEHKEFKDAKLFYR 81 (82)
T ss_pred cHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCEEeccCCcCceeCCceeee
Confidence 69999999999764 89999999999999999999999986 687654 443
No 32
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=98.65 E-value=2.2e-08 Score=74.20 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=43.9
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccccc-cceeeee
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFS-EQCYYIF 238 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~-e~cyy~~ 238 (245)
|+|+||||.++- ...+|-||-.++..||..|||.|+.++-.|- ++++|-|
T Consensus 31 GselVdWL~~~~-~~~~r~eAv~lg~~Ll~~G~i~HV~~~h~FkD~~~fYrF 81 (81)
T cd04439 31 GNEFVSWLLEIG-EISKPEEGVNLGQALLENGIIHHVSDKHQFKNEQVLYRF 81 (81)
T ss_pred hHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCEEecCCCCCEecCCeEEeC
Confidence 699999999884 6778889999999999999999999998898 5566655
No 33
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=98.62 E-value=3.1e-08 Score=74.35 Aligned_cols=51 Identities=24% Similarity=0.448 Sum_probs=43.2
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccc--cccceeeeec
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKIT--FSEQCYYIFG 239 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~--f~e~cyy~~~ 239 (245)
++|+|+||.++.+ +.+|+||..+|+.||+.|||.|+.++-. ..+...|-|.
T Consensus 31 G~~~v~WL~~~~~-~~~~~EA~~~~~~ll~~gli~~V~~~~~~~~~~~~~yr~~ 83 (88)
T cd04450 31 GKAIVQWLMDCTD-VVDPSEALEIAALFVKYGLITPVSDHRSLLKPDETLYRFQ 83 (88)
T ss_pred hHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCEEEecCCcccccCCCceEecc
Confidence 6999999999987 7999999999999999999999998876 3444455443
No 34
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=1.6e-07 Score=88.79 Aligned_cols=97 Identities=26% Similarity=0.362 Sum_probs=78.0
Q ss_pred CCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 45 TVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 45 ~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
...++|+.+.... ..++.|.++++|+||+++| |++||.|+.|||.++.+++.++|+..|+.. ++..|+|++.|
T Consensus 98 ~~~GiG~~i~~~~----~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~--~Gt~V~L~i~r 170 (406)
T COG0793 98 EFGGIGIELQMED----IGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGK--PGTKVTLTILR 170 (406)
T ss_pred cccceeEEEEEec----CCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCC--CCCeEEEEEEE
Confidence 4678899988742 2899999999999999999 999999999999999999999999999987 37789999999
Q ss_pred cCCCCCCCCcccCCCCCcCcCCCCCcc
Q psy1022 125 CWDPNPKGYFTIPRTEPVRPIDPGAWV 151 (245)
Q Consensus 125 ~~~~~~~~~~~~~r~~p~~p~d~~~~~ 151 (245)
. ....+-.+++.|.+.. +..-.|.
T Consensus 171 ~-~~~k~~~v~l~Re~i~--l~~v~~~ 194 (406)
T COG0793 171 A-GGGKPFTVTLTREEIE--LEDVAAK 194 (406)
T ss_pred c-CCCceeEEEEEEEEEe--ccceeee
Confidence 6 2222335666666554 4444454
No 35
>KOG3542|consensus
Probab=98.47 E-value=2.7e-07 Score=90.28 Aligned_cols=83 Identities=34% Similarity=0.485 Sum_probs=72.7
Q ss_pred eeEEEEEEc-CCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccC
Q psy1022 35 NIITVTLNM-DTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (245)
Q Consensus 35 ~i~~V~L~k-~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~ 113 (245)
..+.|.|++ .....|-|.+.||.+ ..-+|||..|.+|+.|++.| |+-||+|++|||+++++++...|+++|++.
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsE--kGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-- 609 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSE--KGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-- 609 (1283)
T ss_pred cceeEEEecccccCCceeEeccCcc--ccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC--
Confidence 556788886 445679999999986 36799999999999999999 999999999999999999999999999984
Q ss_pred CCCcEEEEEEe
Q psy1022 114 KPGPIKLVVAK 124 (245)
Q Consensus 114 ~~~~V~L~V~r 124 (245)
..++|+|..
T Consensus 610 --thLtltvKt 618 (1283)
T KOG3542|consen 610 --THLTLTVKT 618 (1283)
T ss_pred --ceEEEEEec
Confidence 678888764
No 36
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.43 E-value=1.4e-06 Score=63.04 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=50.1
Q ss_pred cccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
.||+.+.. .+.++.|..|.++|+|+..| |++||.|++|||..+.+ ..++ ++... .+..+.|++.+
T Consensus 2 ~~G~~~~~-----~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~---l~~~~-~~~~v~l~v~r 66 (80)
T cd00990 2 YLGLTLDK-----EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDR---LKEYQ-AGDPVELTVFR 66 (80)
T ss_pred cccEEEEc-----cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHH---HHhcC-CCCEEEEEEEE
Confidence 46777754 25679999999999999999 99999999999999976 3333 43321 15678888876
No 37
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.40 E-value=7.4e-07 Score=88.86 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=67.8
Q ss_pred CCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCC-----eecccCCHHHHHHHHHhccCCCCcEEE
Q psy1022 46 VNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND-----INFENMSNDEAVRVLREVVQKPGPIKL 120 (245)
Q Consensus 46 ~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg-----~~l~~~t~~eav~~Lr~~~~~~~~V~L 120 (245)
..|+|+.+... ++.++|..|.+||||++++.|++||+|++||+ +++.+++.++++.+|++. ++..|+|
T Consensus 243 ~~GIGa~l~~~-----~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~--~Gt~V~L 315 (667)
T PRK11186 243 LEGIGAVLQMD-----DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGP--KGSKVRL 315 (667)
T ss_pred eeEEEEEEEEe-----CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCC--CCCEEEE
Confidence 46788887652 46799999999999999855999999999994 466789999999999976 3778999
Q ss_pred EEEecCCCCCCCCcccCCCCC
Q psy1022 121 VVAKCWDPNPKGYFTIPRTEP 141 (245)
Q Consensus 121 ~V~r~~~~~~~~~~~~~r~~p 141 (245)
+|.+.........+++.|...
T Consensus 316 tV~r~~~~~~~~~vtl~R~~i 336 (667)
T PRK11186 316 EILPAGKGTKTRIVTLTRDKI 336 (667)
T ss_pred EEEeCCCCCceEEEEEEeeee
Confidence 998732212223455666544
No 38
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=98.35 E-value=4.2e-07 Score=68.90 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=44.9
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccccccc-eeeee
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQ-CYYIF 238 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~-cyy~~ 238 (245)
|+|+||||.++ ....+|.||-.|...||..|+|.|+.++-.|-.. .+|-|
T Consensus 40 GsElVdWLi~~-g~~~tR~eAv~~gq~Ll~~gii~HV~~~h~F~D~~lfYrF 90 (93)
T cd04440 40 ASKLVDWLLAQ-GDCRTREEAVILGVGLCNNGFMHHVLEKSEFKDEPLLFRF 90 (93)
T ss_pred hhHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCEEecCCCcCcCCcCeEEEE
Confidence 69999999999 6688999999999999999999999999999876 45655
No 39
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.32 E-value=4.6e-06 Score=60.82 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
..|++|..|.++++|+..| |++||.|++|||..+.+ .++....|.... .+..+.|++.+
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~-~g~~v~l~v~r 67 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTK-PGEVITVTVLP 67 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCC-CCCEEEEEEEE
Confidence 5789999999999999998 99999999999999984 677888887641 14578888887
No 40
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.32 E-value=3.4e-06 Score=79.36 Aligned_cols=78 Identities=27% Similarity=0.409 Sum_probs=62.0
Q ss_pred CCCcccEEEEcccCC-CCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1022 45 TVNFLGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123 (245)
Q Consensus 45 ~~~~LG~sI~gg~~~-~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~ 123 (245)
...++|+.+.-.... ....+++|..|.+||||+++| |++||+|++|||+++.+++..++..+|+.. .+..|.|+|.
T Consensus 83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~--~g~~v~ltv~ 159 (389)
T PLN00049 83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGP--EGSSVELTLR 159 (389)
T ss_pred CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC--CCCEEEEEEE
Confidence 346788887643210 011379999999999999999 999999999999999999999999888764 2667999998
Q ss_pred ec
Q psy1022 124 KC 125 (245)
Q Consensus 124 r~ 125 (245)
+.
T Consensus 160 r~ 161 (389)
T PLN00049 160 RG 161 (389)
T ss_pred EC
Confidence 73
No 41
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.29 E-value=6.5e-06 Score=59.14 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=48.9
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
...++|..|.++++|+..| |++||.|++|||..+.+ .++....|.... +..+.+++.+
T Consensus 11 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~--~~~~~l~v~r 68 (79)
T cd00989 11 PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENP--GKPLTLTVER 68 (79)
T ss_pred ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCC--CceEEEEEEE
Confidence 4568999999999999998 99999999999999985 677888887642 4568888876
No 42
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.24 E-value=4.2e-06 Score=77.01 Aligned_cols=72 Identities=31% Similarity=0.492 Sum_probs=61.0
Q ss_pred CCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 46 VNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 46 ~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..+||+.+... ..+++|..|.++|||+++| |++||+|++|||..+.+++..++..+|+.. .+..+.|+|.+.
T Consensus 50 ~~~lG~~~~~~-----~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~g~~v~l~v~R~ 121 (334)
T TIGR00225 50 LEGIGIQVGMD-----DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGK--KGTKVSLEILRA 121 (334)
T ss_pred eEEEEEEEEEE-----CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCC--CCCEEEEEEEeC
Confidence 35688888652 4689999999999999999 999999999999999998888888888764 266799999874
No 43
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=98.24 E-value=5.3e-07 Score=70.06 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=38.0
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccc
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKIT 229 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~ 229 (245)
|+++||||.++=..+ +|.||-.||..||..|+|+|++++..
T Consensus 34 Gse~VDWLv~~~~~i-~R~EAv~l~q~Lmd~gli~hV~~~s~ 74 (109)
T cd04444 34 GSALVDWLISNSFAA-SRLEAVTLASMLMEENFLRPVGVRSM 74 (109)
T ss_pred chHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCchhhHHHHhh
Confidence 699999999997766 99999999999999999999998864
No 44
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.11 E-value=2.3e-05 Score=57.44 Aligned_cols=59 Identities=31% Similarity=0.483 Sum_probs=48.3
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
..+++|..|.++++|++.| |++||.|++|||..+.+ ..+...++.... .+..+.|.+.+
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~-~~~~i~l~v~r 81 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELK-PGDKVTLTVLR 81 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcC-CCCEEEEEEEE
Confidence 4689999999999999998 99999999999999975 456666676541 15678888876
No 45
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.07 E-value=2.5e-05 Score=56.53 Aligned_cols=58 Identities=26% Similarity=0.452 Sum_probs=47.3
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
..|++|..|.+|++|+. | |++||.|++|||..+.+ .++....|.... .+..+.|++.+
T Consensus 7 ~~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~-~~~~v~l~v~r 64 (79)
T cd00986 7 YHGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKK-EGDTVKLKVKR 64 (79)
T ss_pred ecCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCC-CCCEEEEEEEE
Confidence 35799999999999986 7 99999999999999974 667777887531 25578888886
No 46
>KOG3605|consensus
Probab=98.07 E-value=3.2e-06 Score=82.53 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=62.6
Q ss_pred eeEEEEEEc-CCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccC
Q psy1022 35 NIITVTLNM-DTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (245)
Q Consensus 35 ~i~~V~L~k-~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~ 113 (245)
.+.+|.|.+ +....|||++..| +|.+++.||.|++.| +++|.+|++|||+++....|+..|++|..+
T Consensus 736 PV~~V~I~RPd~kyQLGFSVQNG---------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~a-- 803 (829)
T KOG3605|consen 736 PVTTVLIRRPDLRYQLGFSVQNG---------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNA-- 803 (829)
T ss_pred CceEEEeecccchhhccceeeCc---------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHh--
Confidence 566777763 2334599999875 789999999999988 999999999999999999999999999988
Q ss_pred CCCcEEEEE
Q psy1022 114 KPGPIKLVV 122 (245)
Q Consensus 114 ~~~~V~L~V 122 (245)
-+.|-++-
T Consensus 804 -VGEIhMKT 811 (829)
T KOG3605|consen 804 -VGEIHMKT 811 (829)
T ss_pred -hhhhhhhc
Confidence 45565544
No 47
>KOG1738|consensus
Probab=98.01 E-value=2.9e-05 Score=75.76 Aligned_cols=75 Identities=27% Similarity=0.327 Sum_probs=68.4
Q ss_pred CCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1022 44 DTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123 (245)
Q Consensus 44 ~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~ 123 (245)
.+..+||+.|.. ..++.++|+.+.++++|+..+.|..||+|++||+..+.++.+.-.|+-|+.. ..-|.++|.
T Consensus 210 kp~eglg~~I~S----sydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~---~sgi~l~lk 282 (638)
T KOG1738|consen 210 SPSEGLGLYIDS----SYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRET---PAGIELTLK 282 (638)
T ss_pred CcccCCceEEee----ecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccC---cccceeeee
Confidence 567889999998 4689999999999999999999999999999999999999999999999988 677888887
Q ss_pred ec
Q psy1022 124 KC 125 (245)
Q Consensus 124 r~ 125 (245)
+.
T Consensus 283 Kr 284 (638)
T KOG1738|consen 283 KR 284 (638)
T ss_pred cc
Confidence 64
No 48
>KOG3938|consensus
Probab=97.89 E-value=1.9e-05 Score=70.04 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=68.1
Q ss_pred eeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCC
Q psy1022 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (245)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~ 114 (245)
...+|.+.|.. .-||++|.. ++-+-.||.+|.+||.-++--.+++||.|-+|||+++.++.|.|+.++||+.. +
T Consensus 126 q~kEv~v~Kse-dalGlTITD----NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~-r 199 (334)
T KOG3938|consen 126 QAKEVEVVKSE-DALGLTITD----NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELP-R 199 (334)
T ss_pred cceeEEEEecc-cccceEEee----CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcc-c
Confidence 34556666655 458888876 35678899999999999998889999999999999999999999999999973 3
Q ss_pred CCcEEEEEE
Q psy1022 115 PGPIKLVVA 123 (245)
Q Consensus 115 ~~~V~L~V~ 123 (245)
+...+|.+.
T Consensus 200 ge~ftlrLi 208 (334)
T KOG3938|consen 200 GETFTLRLI 208 (334)
T ss_pred CCeeEEEee
Confidence 555666665
No 49
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.80 E-value=9.3e-05 Score=70.29 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..+++|..|.+||||+++| |++||+|++|||..+.+ ..+....|.... .+..++|+|.|.
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~~-~g~~v~l~v~R~ 315 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTLK-PGKKVTLGILRK 315 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 4689999999999999999 99999999999999975 566666665531 256799999873
No 50
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.75 E-value=0.00016 Score=64.60 Aligned_cols=72 Identities=15% Similarity=0.292 Sum_probs=56.3
Q ss_pred cccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.+|+......+ ...|+.|..+.++++|++.| |++||.|++|||.++.+ .+++.+++.+.. .+..++|+|.|.
T Consensus 178 ~lgi~p~~~~g--~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~--~~~~~~~l~~~~-~~~~v~l~V~R~ 249 (259)
T TIGR01713 178 YIRLSPVMKND--KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD--PEQAFQALQMLR-EETNLTLTVERD 249 (259)
T ss_pred eEeEEEEEeCC--ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcC-CCCeEEEEEEEC
Confidence 45666543221 24699999999999999999 99999999999999986 667777777642 256899999984
No 51
>PRK10942 serine endoprotease; Provisional
Probab=97.66 E-value=0.00024 Score=68.60 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=51.1
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.+++|..|.++|+|++.| |++||.|++|||..+.+ .++..++++.. +..+.|+|.|.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~---~~~v~l~V~R~ 464 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSK---PSVLALNIQRG 464 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhC---CCeEEEEEEEC
Confidence 589999999999999999 99999999999999986 78888888875 57899999874
No 52
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.62 E-value=0.00022 Score=67.71 Aligned_cols=59 Identities=31% Similarity=0.527 Sum_probs=51.2
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.+++|..|.++|+|++.| |++||.|++|||..+.+ .++..++|+... .+..+.|+|.|.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~-~g~~v~l~v~R~ 420 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAK-KGGRVALLILRG 420 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 689999999999999999 99999999999999975 778888887642 256799999873
No 53
>PRK10139 serine endoprotease; Provisional
Probab=97.59 E-value=0.00032 Score=67.39 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=50.1
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..|++|..|.++++|++.| |++||.|++|||..+.+ .++....|.... .+..+.|+|.|.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~-~g~~v~l~V~R~ 348 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTE-PGTKVKLGLLRN 348 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 4689999999999999999 99999999999999985 677777776531 256788988873
No 54
>PRK10139 serine endoprotease; Provisional
Probab=97.55 E-value=0.00028 Score=67.87 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=50.5
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.+++|..|.++++|++.| |++||.|++|||..+.+ .++..++|++. ...+.|+|.|.
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~---~~~v~l~v~R~ 446 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAK---PAIIALQIVRG 446 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhC---CCeEEEEEEEC
Confidence 589999999999999999 99999999999999965 78888888875 46889998873
No 55
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.46 E-value=0.00043 Score=64.30 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=49.7
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.|++|..|.+++||++.| |++||.|++|||..+.+ .++..+.|+.. ..++.+.|+|.|.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~-~~g~~v~l~v~R~ 336 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAET-RPGSKVMVTVLRQ 336 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhc-CCCCEEEEEEEEC
Confidence 589999999999999999 99999999999999975 66777777653 1266799999873
No 56
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.45 E-value=0.00078 Score=54.76 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=57.0
Q ss_pred eeeEEEEEEcC----CCCcccEEEEcccCC-CCCCCEEEEeecCCChhhhcCCCCC-CCEEEeeCCeecccCCHHHHHHH
Q psy1022 34 LNIITVTLNMD----TVNFLGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEP-GDMILQVNDINFENMSNDEAVRV 107 (245)
Q Consensus 34 ~~i~~V~L~k~----~~~~LG~sI~gg~~~-~~~~gi~I~~V~~Gg~A~~~G~L~~-GD~Il~VNg~~l~~~t~~eav~~ 107 (245)
...+.|.+... ..+.||++|+-.... ....++-|.+|.|||||+.+| |.+ .|.|+.+++..+.+ .++..++
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~ 85 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFEL 85 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHH
Confidence 45566666532 235689999875432 346788899999999999999 887 69999999988885 5677777
Q ss_pred HHhccCCCCcEEEEEEe
Q psy1022 108 LREVVQKPGPIKLVVAK 124 (245)
Q Consensus 108 Lr~~~~~~~~V~L~V~r 124 (245)
++.. ...++.|.|-.
T Consensus 86 v~~~--~~~~l~L~Vyn 100 (138)
T PF04495_consen 86 VEAN--ENKPLQLYVYN 100 (138)
T ss_dssp HHHT--TTS-EEEEEEE
T ss_pred HHHc--CCCcEEEEEEE
Confidence 7765 26678888875
No 57
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.45 E-value=0.00046 Score=65.62 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=50.2
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.++.|..|.+++||+.+| |++||+|++|||..+.+ .++....++.. .+..+.+++.|.
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~--~~~~v~l~v~R~ 260 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKEN--PGKSMDIKVERN 260 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhC--CCCceEEEEEEC
Confidence 478999999999999999 99999999999999975 67888888774 256789999874
No 58
>PRK10898 serine endoprotease; Provisional
Probab=97.41 E-value=0.0007 Score=63.01 Aligned_cols=60 Identities=27% Similarity=0.339 Sum_probs=48.8
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..|++|..|.+++||++.| |++||.|++|||..+.+ .++..+.|... ..+..+.|++.|.
T Consensus 278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~-~~g~~v~l~v~R~ 337 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEI-RPGSVIPVVVMRD 337 (353)
T ss_pred CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhc-CCCCEEEEEEEEC
Confidence 3799999999999999999 99999999999999975 45555666543 1256799999873
No 59
>PRK10942 serine endoprotease; Provisional
Probab=97.37 E-value=0.00074 Score=65.26 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=49.9
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..|++|..|.++++|++.| |++||.|++|||..+.+ .++....|.... .+..+.|+|.|.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~-~g~~v~l~v~R~ 369 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTMP-VGSKLTLGLLRD 369 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 4689999999999999999 99999999999999986 566667776542 256789999874
No 60
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.34 E-value=0.00079 Score=64.51 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=49.3
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.+.+|..|.+||+|+++| |++||.|++|||..+. +.++..+.++.. .+..+.|++.|.
T Consensus 221 ~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~--~~~~v~l~v~R~ 278 (449)
T PRK10779 221 IEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDN--PGKPLALEIERQ 278 (449)
T ss_pred cCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhC--CCCEEEEEEEEC
Confidence 357999999999999999 9999999999999996 467788888764 256789999874
No 61
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=97.07 E-value=0.00047 Score=52.39 Aligned_cols=36 Identities=31% Similarity=0.590 Sum_probs=31.3
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeec
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHT 224 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~ 224 (245)
++||||||..+ .=..+|-||--+|+.||.+|||+-+
T Consensus 34 GsdVVdWLv~~-~~v~~r~EAl~las~Ll~eGyL~P~ 69 (99)
T cd04445 34 GSCVIDWLVSN-QSVRNRQEGLMLASSLLNEGYLQPA 69 (99)
T ss_pred ccHHHHHHHHh-hcccchHHHHHHHHHHHHcCCeeec
Confidence 69999999988 3345699999999999999999754
No 62
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.06 E-value=0.001 Score=63.82 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=46.1
Q ss_pred CEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 64 gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..+|..|.++|||+++| |++||.|++|||+.+.+. ++....+.... .+..++++|.|.
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~-~g~~v~v~v~R~ 184 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKI-GDESTTITVAPF 184 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhc-cCCceEEEEEeC
Confidence 34799999999999999 999999999999999864 55555554332 245799999884
No 63
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=97.05 E-value=0.00055 Score=52.15 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=33.8
Q ss_pred cchhhhhhhhhccc-------chhhHHHHHHHHHHhhccceeecccc
Q psy1022 188 SADVVDWLDKHVEG-------FTDRREARKYASQMLKFGYIRHTVNK 227 (245)
Q Consensus 188 ~~d~v~wl~~~v~g-------~~~r~~a~~~a~~~l~~~~i~h~~~k 227 (245)
++|+||||++|... -.+|.+|=+++..||++|+|.|+--|
T Consensus 30 GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~gvi~~V~~~ 76 (95)
T cd04446 30 GSEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCRVFEAVGTK 76 (95)
T ss_pred hHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcCCeeeccch
Confidence 59999999998733 34899999999999999999887443
No 64
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=97.04 E-value=0.00031 Score=52.15 Aligned_cols=37 Identities=22% Similarity=0.572 Sum_probs=34.9
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecc
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTV 225 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~ 225 (245)
++|.|+||.+|+.. .++..|.+|+-.|+.+||||+.=
T Consensus 32 G~~Iv~~L~~n~~~-~s~~~aE~fGQdLv~~gfir~~g 68 (84)
T cd04436 32 GSEIVSWLQENMPE-KDLDAAEAFGQDLLNQGFLRLVG 68 (84)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCchHHHhc
Confidence 69999999999999 99999999999999999998863
No 65
>KOG0606|consensus
Probab=96.95 E-value=0.0031 Score=65.45 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=61.4
Q ss_pred EEEEcCCCCcccEEEEcccCC-----CCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccC
Q psy1022 39 VTLNMDTVNFLGISIVGQSNK-----GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (245)
Q Consensus 39 V~L~k~~~~~LG~sI~gg~~~-----~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~ 113 (245)
+.|.+.+ .+|||++..-..- -+-.-..|..|.+|++|...| |++||.|..|||..+.++.|.|++++|-..
T Consensus 630 I~i~~~~-~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~-- 705 (1205)
T KOG0606|consen 630 ITIHFSG-KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKS-- 705 (1205)
T ss_pred eeeeccc-cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhc--
Confidence 5555554 6789876542110 112236789999999999998 999999999999999999999999999876
Q ss_pred CCCcEEEEEEe
Q psy1022 114 KPGPIKLVVAK 124 (245)
Q Consensus 114 ~~~~V~L~V~r 124 (245)
+..+.+.+..
T Consensus 706 -gn~v~~~ttp 715 (1205)
T KOG0606|consen 706 -GNKVTLRTTP 715 (1205)
T ss_pred -CCeeEEEeec
Confidence 5667666544
No 66
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.93 E-value=0.0043 Score=46.62 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=43.0
Q ss_pred cccEEEEcccCCCCCCCEEEEeecCC--------ChhhhcC-CCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcE
Q psy1022 48 FLGISIVGQSNKGGDGGIYVGSIMKG--------GAVALDG-RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118 (245)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~G--------g~A~~~G-~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V 118 (245)
.||.-+.-. ++++.|.+|.+| ||-..-| .+++||.|++|||+.+..- .....+|.+.. +..|
T Consensus 2 ~LGAd~~~~-----~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~a--gk~V 72 (88)
T PF14685_consen 2 LLGADFSYD-----NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKA--GKQV 72 (88)
T ss_dssp B-SEEEEEE-----TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTT--TSEE
T ss_pred ccceEEEEc-----CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccC--CCEE
Confidence 366655542 477889999997 6666766 6789999999999999752 33556666542 6689
Q ss_pred EEEEEe
Q psy1022 119 KLVVAK 124 (245)
Q Consensus 119 ~L~V~r 124 (245)
.|+|.+
T Consensus 73 ~Ltv~~ 78 (88)
T PF14685_consen 73 LLTVNR 78 (88)
T ss_dssp EEEEE-
T ss_pred EEEEec
Confidence 999986
No 67
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.80 E-value=0.0066 Score=57.44 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=40.8
Q ss_pred CChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 73 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 73 Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
++||+.+| |++||.|++|||..+.. .+++.++|+... +..+.|+|.|.
T Consensus 123 ~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~--g~~V~LtV~R~ 170 (402)
T TIGR02860 123 HSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAG--GEKLTLTIERG 170 (402)
T ss_pred CCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCC--CCeEEEEEEEC
Confidence 58999988 99999999999999975 688888888762 56788998873
No 68
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.68 E-value=0.0044 Score=58.96 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=48.3
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..+.+|..|.++|||+++| |++||.|++|||..+.+ ..+..+.+... .+.+.+.+.+.
T Consensus 127 ~~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~--~~dl~~~ia~~---~~~v~~~I~r~ 184 (420)
T TIGR00054 127 EVGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPG--FKDVRQQIADI---AGEPMVEILAE 184 (420)
T ss_pred CCCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhh---cccceEEEEEe
Confidence 3577899999999999999 99999999999999976 56777777665 36778888773
No 69
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.51 E-value=0.0054 Score=58.51 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=39.1
Q ss_pred EEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1022 67 VGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123 (245)
Q Consensus 67 I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~ 123 (245)
|..|.+||+|+..| |++||+|++|||+.+.+ ..+....+. +..+.|.|.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D--w~D~~~~l~-----~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD--LIDYQFLCA-----DEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHhc-----CCcEEEEEE
Confidence 67899999999999 99999999999999975 445444442 345777775
No 70
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.46 E-value=0.0034 Score=60.73 Aligned_cols=54 Identities=24% Similarity=0.485 Sum_probs=42.5
Q ss_pred eeEEEEEEcCCCC--cccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCe
Q psy1022 35 NIITVTLNMDTVN--FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94 (245)
Q Consensus 35 ~i~~V~L~k~~~~--~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~ 94 (245)
+...+++...+-+ .||+.+.. ..+...|..|.+||||..+| |.+||.|+.|||.
T Consensus 437 ~~~gL~~~~~~~~~~~LGl~v~~-----~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 437 ERFGLTFTPKPREAYYLGLKVKS-----EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred hhcceEEEecCCCCcccceEecc-----cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 3344555433333 58887765 26788999999999999999 9999999999999
No 71
>KOG3129|consensus
Probab=96.22 E-value=0.015 Score=50.26 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=43.3
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCC-HHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS-NDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t-~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..-.+|.+|.++|||+.+| |++||.|+++..+.-.+.. ........+.. ....+.++|.|.
T Consensus 138 ~~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~--e~~~v~v~v~R~ 199 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSN--EDQIVSVTVIRE 199 (231)
T ss_pred cceEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhc--cCcceeEEEecC
Confidence 4568999999999999999 9999999997665554433 34443334333 255677887774
No 72
>KOG3532|consensus
Probab=95.86 E-value=0.029 Score=55.94 Aligned_cols=82 Identities=17% Similarity=0.383 Sum_probs=64.6
Q ss_pred eeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCC
Q psy1022 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (245)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~ 114 (245)
.+..+.+.+.....+|+..... +...+-|..|.++++|.++. +.+||.+++|||+++. +..++.+.++..
T Consensus 374 ~ilD~f~~~~~s~~ig~vf~~~----~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~--- 443 (1051)
T KOG3532|consen 374 NVLDTFSRYDVSSPIGLVFDKN----TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQST--- 443 (1051)
T ss_pred hhhhhhccccccCceeEEEecC----CceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhc---
Confidence 3344455555667788877653 46888999999999999987 9999999999999997 588999999987
Q ss_pred CCcEEEEEEecC
Q psy1022 115 PGPIKLVVAKCW 126 (245)
Q Consensus 115 ~~~V~L~V~r~~ 126 (245)
.+.+...+.+..
T Consensus 444 ~~~~~~l~~~~~ 455 (1051)
T KOG3532|consen 444 TGDLTVLVERSL 455 (1051)
T ss_pred ccceEEEEeecc
Confidence 677766665533
No 73
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=95.66 E-value=0.034 Score=50.96 Aligned_cols=64 Identities=20% Similarity=0.386 Sum_probs=53.2
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEecCCCCCC
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 131 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~~~~~~~ 131 (245)
.|+|+..+..++++. |.|++||.|.+|||..|.. .++....++..+ .+..|++...|...++..
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k-~Gd~VtI~~~r~~~~~~~ 193 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKK-PGDEVTIDYERHNETPEI 193 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccC-CCCeEEEEEEeccCCCce
Confidence 589999999999864 6899999999999999974 899999998764 377899999975554443
No 74
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.32 E-value=0.088 Score=47.56 Aligned_cols=53 Identities=19% Similarity=0.424 Sum_probs=38.2
Q ss_pred eecCCChh---hhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 69 SIMKGGAV---ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 69 ~V~~Gg~A---~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
++.||+.+ ...| |++||.+.+|||.++.+ .+++.+++++.. ....++|+|.|.
T Consensus 210 rl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~-~~tei~ltVeRd 265 (276)
T PRK09681 210 AVKPGADRSLFDASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLP-SMDSIQLTVLRK 265 (276)
T ss_pred EECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhc-cCCeEEEEEEEC
Confidence 45555433 2456 99999999999999986 555666665542 257899999983
No 75
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.075 Score=48.97 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=48.8
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
..|++|..+.++|||++.| |+.||.|+++||..+.+ ..+....+.... .+..+.+.+.|.
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~~-~g~~v~~~~~r~ 328 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNR-PGDEVALKLLRG 328 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhccC-CCCEEEEEEEEC
Confidence 4569999999999999999 99999999999999986 555555555542 366789999884
No 76
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=94.99 E-value=0.018 Score=43.56 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=33.9
Q ss_pred cchhhhhhhhhccc------chhhHHHHHHHHHHhhccceeecccc
Q psy1022 188 SADVVDWLDKHVEG------FTDRREARKYASQMLKFGYIRHTVNK 227 (245)
Q Consensus 188 ~~d~v~wl~~~v~g------~~~r~~a~~~a~~~l~~~~i~h~~~k 227 (245)
++|+||||++|... --+|.+|-+....||+++.|-|+-.|
T Consensus 32 gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~qkll~~hVie~V~g~ 77 (92)
T cd04447 32 ASEAVDWLHELLRSNSNFGPEVTRQQTVQLLKKFLKNHVIEDIKGR 77 (92)
T ss_pred hHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCCchhhccc
Confidence 59999999999744 56799999999999999999775444
No 77
>KOG1421|consensus
Probab=94.51 E-value=0.092 Score=52.58 Aligned_cols=57 Identities=25% Similarity=0.494 Sum_probs=47.3
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
.+-+.|..|.++|+|++ .|++||+++.||+..+.+ ..++.++|-+.+ +..+.|+|.|
T Consensus 302 tgmLvV~~vL~~gpa~k--~Le~GDillavN~t~l~d--f~~l~~iLDegv--gk~l~LtI~R 358 (955)
T KOG1421|consen 302 TGMLVVETVLPEGPAEK--KLEPGDILLAVNSTCLND--FEALEQILDEGV--GKNLELTIQR 358 (955)
T ss_pred ceeEEEEEeccCCchhh--ccCCCcEEEEEcceehHH--HHHHHHHHhhcc--CceEEEEEEe
Confidence 46677889999999987 599999999999988875 677778886653 6778999888
No 78
>KOG4371|consensus
Probab=94.51 E-value=0.049 Score=56.50 Aligned_cols=85 Identities=21% Similarity=0.459 Sum_probs=73.9
Q ss_pred eeeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccC
Q psy1022 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (245)
Q Consensus 34 ~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~ 113 (245)
.-.+.|.+.+++..++|+.+.... ..+++||..+...++|...|.+++||++....|+++.+.+..+.++-++-.
T Consensus 1244 ~~l~~~~~~~~p~~~~~~~~~~~~---~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v-- 1318 (1332)
T KOG4371|consen 1244 APLISVMLLKKPMATLGLSLAKRT---MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLV-- 1318 (1332)
T ss_pred chhhhheeeecccccccccccccC---cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhc--
Confidence 355677777888899999988765 489999999999999999999999999999999999999999888888855
Q ss_pred CCCcEEEEEEe
Q psy1022 114 KPGPIKLVVAK 124 (245)
Q Consensus 114 ~~~~V~L~V~r 124 (245)
.+++.+++.+
T Consensus 1319 -~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1319 -QGPVQITVTR 1328 (1332)
T ss_pred -cCchhheehh
Confidence 7888888765
No 79
>KOG1320|consensus
Probab=93.79 E-value=0.17 Score=48.93 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=46.2
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
.+++|..|++|+++...+ +.+||+|+.|||+.+.+ ..+...+|+.+.. .+.|.+...+
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~-~~~v~vl~~~ 455 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKN--LKHLYELIEECST-EDKVAVLDRR 455 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeec--hHHHHHHHHhcCc-CceEEEEEec
Confidence 579999999999999987 99999999999999998 5667788887731 2345555544
No 80
>KOG4371|consensus
Probab=93.55 E-value=0.14 Score=53.37 Aligned_cols=82 Identities=27% Similarity=0.400 Sum_probs=62.1
Q ss_pred ceeeEEEEEEcCCCCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhcc
Q psy1022 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 112 (245)
Q Consensus 33 ~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~ 112 (245)
..+++.|.+.+++ ..||..+..- .+.+-|+...-.++-.+- -|++||.|+.|||+.+++.-|.+|+.+++.-
T Consensus 1145 ~p~~i~~~~~r~~-~~l~~~~a~~-----~~~~~~~~~~~~~~~~~p-d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~- 1216 (1332)
T KOG4371|consen 1145 GPRVIDVELDRNE-GSLGVQIASL-----SGRVCIKQLTSEPAISHP-DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGG- 1216 (1332)
T ss_pred CCccccccCCCCC-CCCCceeccC-----ccceehhhcccCCCCCCC-CcchhhhhhhccceeeechhhHHHHHHHhcc-
Confidence 3577778887766 6799988873 233344444433333333 3999999999999999999999999999987
Q ss_pred CCCCcEEEEEEe
Q psy1022 113 QKPGPIKLVVAK 124 (245)
Q Consensus 113 ~~~~~V~L~V~r 124 (245)
++.|.|-|.|
T Consensus 1217 --~~~~~~~~~r 1226 (1332)
T KOG4371|consen 1217 --GDRVVLGVQR 1226 (1332)
T ss_pred --CceEEEEeec
Confidence 7789999987
No 81
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=92.91 E-value=0.57 Score=41.54 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=45.4
Q ss_pred CCcccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1022 46 VNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (245)
Q Consensus 46 ~~~LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r~ 125 (245)
.+-+|+.+..+++ ++.=+..| |+.||+.+++|+.++.+ .+++.++|+.... ..++.|+|.|.
T Consensus 204 eki~Gyr~~pgkd--------------~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~-m~s~qlTv~R~ 265 (275)
T COG3031 204 EKIEGYRFEPGKD--------------GSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRN-MPSLQLTVIRR 265 (275)
T ss_pred CceEEEEecCCCC--------------cchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhc-CcceEEEEEec
Confidence 3556666666542 34555667 99999999999999975 6777777766532 57899999983
No 82
>KOG3572|consensus
Probab=92.12 E-value=0.072 Score=56.38 Aligned_cols=46 Identities=26% Similarity=0.519 Sum_probs=42.5
Q ss_pred chhhhhhhhhcccchhhHHHHHHHHH--Hhhccceeecccccccccce
Q psy1022 189 ADVVDWLDKHVEGFTDRREARKYASQ--MLKFGYIRHTVNKITFSEQC 234 (245)
Q Consensus 189 ~d~v~wl~~~v~g~~~r~~a~~~a~~--~l~~~~i~h~~~k~~f~e~c 234 (245)
+++|.||..|++|+.+|.+|=||--. +++.|+--|..+|-+|=.--
T Consensus 1305 sE~VnWL~n~f~gI~Tre~AikygqK~~e~qlglf~hal~kh~fldG~ 1352 (1701)
T KOG3572|consen 1305 SEWVNWLQNYFAGIETREKAIKYGQKTNEKQLGLFHHALMKHVFLDGL 1352 (1701)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhhhHHHhhhhhhhhhcceeccce
Confidence 89999999999999999999999999 88899999999999986543
No 83
>KOG4407|consensus
Probab=89.33 E-value=0.27 Score=52.39 Aligned_cols=58 Identities=19% Similarity=0.426 Sum_probs=51.9
Q ss_pred CCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 63 ~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
.-|||..|++.|+|..+. |+.||+++.||...+.++...+++.++++. .-.++|.|.+
T Consensus 143 eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt---~~~~~~~~~P 200 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQT---PAVLTLHVVP 200 (1973)
T ss_pred hhhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccC---CCCCCceecc
Confidence 357899999999999987 999999999999999999999999999987 5667777764
No 84
>PF12812 PDZ_1: PDZ-like domain
Probab=88.81 E-value=1.6 Score=31.92 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=37.2
Q ss_pred CEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 64 gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
++++.....|+++...| +..|-.|.+|||+.+.+ .++.++++++.
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~i 75 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD--LDDFIKVVKKI 75 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC--HHHHHHHHHhC
Confidence 35666667888877765 99999999999999986 78888888876
No 85
>KOG1945|consensus
Probab=87.54 E-value=1.4 Score=41.00 Aligned_cols=84 Identities=24% Similarity=0.335 Sum_probs=63.1
Q ss_pred eEEEEEEcCCCCcccEEEEcc---cCC-CCCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 36 IITVTLNMDTVNFLGISIVGQ---SNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 36 i~~V~L~k~~~~~LG~sI~gg---~~~-~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
...+-+.+ +..++|+++.|- ++. -...++++.++.+|+...++|+..+-|.+..+.+.++..++...+++.++.+
T Consensus 100 ~~e~av~~-~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S 178 (377)
T KOG1945|consen 100 LFEVAVEK-GAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGS 178 (377)
T ss_pred hhhhhccC-CcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccc
Confidence 33444433 336788877661 111 2357899999999999999999999999999999999999999999999876
Q ss_pred cCCCCcEEEEEE
Q psy1022 112 VQKPGPIKLVVA 123 (245)
Q Consensus 112 ~~~~~~V~L~V~ 123 (245)
...++++..
T Consensus 179 ---~~~~n~~s~ 187 (377)
T KOG1945|consen 179 ---SSRVNFTSP 187 (377)
T ss_pred ---hhccCCccc
Confidence 444444443
No 86
>KOG0792|consensus
Probab=83.50 E-value=0.59 Score=48.95 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=56.5
Q ss_pred CCcccEEEEcccCC---CCCCCEEEEeec-------------CCChhhhcC-CCCCCCEEEeeCCeecccCCHHHHHHHH
Q psy1022 46 VNFLGISIVGQSNK---GGDGGIYVGSIM-------------KGGAVALDG-RIEPGDMILQVNDINFENMSNDEAVRVL 108 (245)
Q Consensus 46 ~~~LG~sI~gg~~~---~~~~gi~I~~V~-------------~Gg~A~~~G-~L~~GD~Il~VNg~~l~~~t~~eav~~L 108 (245)
.+.+||.+.|+.+. .-..+..++++. |++.|+... ++..||+++.|||.+.....|+..+.+|
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 56799999998764 223678888999 898887765 8999999999999999999999999999
Q ss_pred Hhc
Q psy1022 109 REV 111 (245)
Q Consensus 109 r~~ 111 (245)
+..
T Consensus 795 rs~ 797 (1144)
T KOG0792|consen 795 RSP 797 (1144)
T ss_pred hhh
Confidence 876
No 87
>KOG4407|consensus
Probab=79.88 E-value=1.3 Score=47.50 Aligned_cols=75 Identities=7% Similarity=-0.007 Sum_probs=53.1
Q ss_pred ceeeEEEEEEcCCCCcccEEEEc--------------------ccCC---CCCCCEEEEeecCCChhhhcCCCCCCCEEE
Q psy1022 33 SLNIITVTLNMDTVNFLGISIVG--------------------QSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMIL 89 (245)
Q Consensus 33 ~~~i~~V~L~k~~~~~LG~sI~g--------------------g~~~---~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il 89 (245)
++....+.+.+.+++||||+++- |+.. .....+++.++..++|+...| +..||.|.
T Consensus 43 S~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~ 121 (1973)
T KOG4407|consen 43 SIQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVA 121 (1973)
T ss_pred cCCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-ccccccee
Confidence 34344444557888999999752 2111 233467889999999999999 99999999
Q ss_pred eeCCeecccCCHHHHHHHHH
Q psy1022 90 QVNDINFENMSNDEAVRVLR 109 (245)
Q Consensus 90 ~VNg~~l~~~t~~eav~~Lr 109 (245)
.|||....+.+ ....-.++
T Consensus 122 ~itG~e~~~~T-S~~~~~vk 140 (1973)
T KOG4407|consen 122 GITGLEPTSPT-SLPPYQVK 140 (1973)
T ss_pred eecccccCCCc-cccHHHHh
Confidence 99999988766 43333333
No 88
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=73.84 E-value=12 Score=34.43 Aligned_cols=54 Identities=28% Similarity=0.472 Sum_probs=40.0
Q ss_pred EEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCc---EEEEEEe
Q psy1022 66 YVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP---IKLVVAK 124 (245)
Q Consensus 66 ~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~---V~L~V~r 124 (245)
++..+..+++|+..| |++||.|+++|+..+.. .++....+.... +.. +.+.+.+
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~~--~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS--WDDVRRLLVAAA--GDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccC--HHHHHHHHHhcc--CCcccceEEEEEe
Confidence 444789999999999 99999999999999976 555555554431 233 5666666
No 89
>KOG3834|consensus
Probab=73.69 E-value=17 Score=34.94 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=53.6
Q ss_pred eeeEEEEEEcCCCCc---ccEEEEcccCC-CCCCCEEEEeecCCChhhhcCCCCCCCEEEee-CCeecccCCHHHHHHHH
Q psy1022 34 LNIITVTLNMDTVNF---LGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMILQV-NDINFENMSNDEAVRVL 108 (245)
Q Consensus 34 ~~i~~V~L~k~~~~~---LG~sI~gg~~~-~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~V-Ng~~l~~~t~~eav~~L 108 (245)
.+++.|.|......+ ||++|+=.... ....-+=|-+|.+.++|+++|...-+|.|+-+ +.+.- ..++...+|
T Consensus 76 ~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lI 152 (462)
T KOG3834|consen 76 QEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLI 152 (462)
T ss_pred ceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHH
Confidence 355555555333344 88888653221 12345568899999999999955588999987 54432 345566666
Q ss_pred HhccCCCCcEEEEEEe
Q psy1022 109 REVVQKPGPIKLVVAK 124 (245)
Q Consensus 109 r~~~~~~~~V~L~V~r 124 (245)
... .+..+.|.|--
T Consensus 153 esh--e~kpLklyVYN 166 (462)
T KOG3834|consen 153 ESH--EGKPLKLYVYN 166 (462)
T ss_pred Hhc--cCCCcceeEee
Confidence 543 25667776643
No 90
>COG3512 CRISPR-associated protein, Cas2 homolog [Defense mechanisms]
Probab=73.31 E-value=1.9 Score=33.21 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHhhccceeec
Q psy1022 202 FTDRREARKYASQMLKFGYIRHT 224 (245)
Q Consensus 202 ~~~r~~a~~~a~~~l~~~~i~h~ 224 (245)
-.+||.|+||-..|||.||+-|-
T Consensus 20 ~~erKaa~kFR~fLlk~Gy~MlQ 42 (116)
T COG3512 20 AAERKAANKFRQFLLKDGYQMLQ 42 (116)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 46899999999999999998663
No 91
>PF10656 DUF2483: Hypothetical protein of unknown function (DUF2483); InterPro: IPR018918 This entry is represented by Bacteriophage phi ETA, Orf16. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins found in bacteriophage particularly of the SA bacteriophages 11, Mu50B, family, homologous to phi-ETA Orf16.
Probab=70.72 E-value=0.91 Score=32.56 Aligned_cols=34 Identities=41% Similarity=0.568 Sum_probs=27.5
Q ss_pred hhhHHHHHHHH------HHhhccceeecccccccccceee
Q psy1022 203 TDRREARKYAS------QMLKFGYIRHTVNKITFSEQCYY 236 (245)
Q Consensus 203 ~~r~~a~~~a~------~~l~~~~i~h~~~k~~f~e~cyy 236 (245)
.+||+||+|.+ .|=|+-.|+|||-..+=.|+-+|
T Consensus 33 t~rr~Ar~f~Gld~~~Idm~~H~aIk~t~tet~e~eeVe~ 72 (72)
T PF10656_consen 33 TDRRDAREFDGLDDISIDMTKHKAIKKTVTETTEYEEVEY 72 (72)
T ss_pred cccccccccCCchheeechhhceeeEEEEEeeeEEEeecC
Confidence 46888888875 57888899999998888877665
No 92
>KOG3834|consensus
Probab=70.05 E-value=8.5 Score=36.92 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=47.8
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~r 124 (245)
..+.-|-+|.++++|.++|..---|.|+.|||..+.. ..+....+|+.. ...|+|+|..
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~---sekVkltv~n 72 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKAN---SEKVKLTVYN 72 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhc---ccceEEEEEe
Confidence 4677788899999999999667779999999999974 577777788776 3348888864
No 93
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=65.98 E-value=10 Score=32.24 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.0
Q ss_pred ccEEEEcccCCCCCCCEEEEeecCCChhhhcCCCCCCCEEEee
Q psy1022 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQV 91 (245)
Q Consensus 49 LG~sI~gg~~~~~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~V 91 (245)
.|+.+.. .++.+.|..|..||+|++.| +..|++|.+|
T Consensus 113 ~GL~l~~-----e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 113 AGLTLME-----EGGKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred CCCEEEe-----eCCEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 5787776 26789999999999999999 9999988876
No 94
>KOG1421|consensus
Probab=61.44 E-value=20 Score=36.67 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=45.9
Q ss_pred CCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1022 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123 (245)
Q Consensus 62 ~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~L~V~ 123 (245)
..|+|+...-.|+||.. + |++-..|..|||+... +.++-+.+|++. ++.-...|.
T Consensus 861 p~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~i---pdnsyv~v~ 915 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEI---PDNSYVQVK 915 (955)
T ss_pred CCceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhC---CCCceEEEE
Confidence 37999999999999988 5 9999999999999986 589999999987 555444443
No 95
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=58.57 E-value=7.9 Score=27.43 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=20.5
Q ss_pred hhhhhhhcccchhh-----------HHHHHHHHHHhhc
Q psy1022 192 VDWLDKHVEGFTDR-----------REARKYASQMLKF 218 (245)
Q Consensus 192 v~wl~~~v~g~~~r-----------~~a~~~a~~~l~~ 218 (245)
-+||++.+||+.+. -.-|+||.+||+.
T Consensus 26 Ke~LlqSIEgmi~~~A~~vLRnP~~~kLr~~an~Ll~L 63 (71)
T PF11619_consen 26 KEWLLQSIEGMIKEAAVEVLRNPNKSKLRQHANNLLNL 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 47999999996543 3457888888864
No 96
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=46.85 E-value=39 Score=28.65 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=32.8
Q ss_pred cCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcE
Q psy1022 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118 (245)
Q Consensus 79 ~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V 118 (245)
.|.+.+||+++-|+++-.++-|..+++++++++ +..|
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~---Ga~V 152 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREA---GAYI 152 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHC---CCEE
Confidence 456889999999999999999999999999998 5554
No 97
>PF03091 CutA1: CutA1 divalent ion tolerance protein; InterPro: IPR004323 The CutA family of proteins which exhibit ion tolerance are found in a large variety of species []. In E.Coli, two operons on the cutA locus contain genes that encode three proteins, CutA1, CutA2 and CutA3. CutA1 proteins are found in the cytoplasm while CutA2 (50kDa) and CutA3 (24kDa) are located in the inner membrane. Although the role of E. Coli CutA1 is not clear, studies on E. coli cutA locus describe some mutations that lead to an increase in copper sensitivity, thus suggesting a role in ion tolerance []. To date, the structure of CutA proteins from several species have been solved [, ]. The crystal structures of the E.Coli and rat CutA1 proteins show both these proteins to be trimeric in the crystal as well as in solution[].Trimerisation seems to supported by the formation of beta sheets between the subunit. This trimeric structure suggests the protein may be involved in signal transduction due to architectural similarities with PII signal transducer proteins []. Recent studies propose that mammalian CutA1 in the neuronal cell membrane acts as an anchor for acetylcholinesterase (AChE)1 [].; GO: 0010038 response to metal ion; PDB: 1O5J_A 1KR4_A 1VHF_A 3GSD_H 1OSC_A 3OPK_A 4E98_C 1V9B_F 1UKU_A 2E66_C ....
Probab=40.63 E-value=22 Score=27.27 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.5
Q ss_pred chhhHHHHHHHHHHhhccce
Q psy1022 202 FTDRREARKYASQMLKFGYI 221 (245)
Q Consensus 202 ~~~r~~a~~~a~~~l~~~~i 221 (245)
+.|+.+|+++|..||+.+++
T Consensus 8 ~p~~e~A~~ia~~lve~rLa 27 (102)
T PF03091_consen 8 CPDREEAERIARALVEERLA 27 (102)
T ss_dssp ESSHHHHHHHHHHHHHTTS-
T ss_pred cCCHHHHHHHHHHHHhCCeE
Confidence 46899999999999999987
No 98
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=40.44 E-value=24 Score=22.71 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.7
Q ss_pred hcccchhhHHHHHHHHHHhhc
Q psy1022 198 HVEGFTDRREARKYASQMLKF 218 (245)
Q Consensus 198 ~v~g~~~r~~a~~~a~~~l~~ 218 (245)
+-.||..++||++++..|+..
T Consensus 20 ~k~GF~TkkeA~~~~~~~~~~ 40 (46)
T PF14657_consen 20 TKRGFKTKKEAEKALAKIEAE 40 (46)
T ss_pred EcCCCCcHHHHHHHHHHHHHH
Confidence 346899999999999998754
No 99
>KOG1903|consensus
Probab=40.00 E-value=8.7 Score=32.24 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=17.6
Q ss_pred cchhhhhhhhhcccchhhHH
Q psy1022 188 SADVVDWLDKHVEGFTDRRE 207 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~ 207 (245)
++|++|||+-||-+|-+|=.
T Consensus 54 gEn~nDW~AVHvVDFFNRiN 73 (217)
T KOG1903|consen 54 GENLNDWLAVHVVDFFNRIN 73 (217)
T ss_pred CCCccceeeeehhhhhhhhH
Confidence 58999999999999998843
No 100
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=38.05 E-value=48 Score=24.64 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHhhccceeecccccccccceeeeeccc
Q psy1022 204 DRREARKYASQMLKFGYIRHTVNKITFSEQCYYIFGDL 241 (245)
Q Consensus 204 ~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~cyy~~~~~ 241 (245)
++.+.+.+.-.|+..|||..+.+. -.-+|+.+|+.
T Consensus 55 ~~~~~~~li~~Li~~g~L~~~~~~---~~~~~l~~~~~ 89 (106)
T PF09382_consen 55 SKDDWERLIRQLILEGYLSEDNGG---FAYPYLKLTPK 89 (106)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEECC---CCTEEEEE-GG
T ss_pred CHHHHHHHHHHHHHcCCceecCCc---ccccEEEECHH
Confidence 688899999999999999555554 35568888765
No 101
>KOG2921|consensus
Probab=37.54 E-value=34 Score=32.71 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCCCEEEEeecCCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHh
Q psy1022 61 GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110 (245)
Q Consensus 61 ~~~gi~I~~V~~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~ 110 (245)
...++.|..|...+|+.--..|.+||.|.++||..+.. .++=.+.|+.
T Consensus 218 ~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t 265 (484)
T KOG2921|consen 218 HGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT 265 (484)
T ss_pred cCceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence 35788999999998876554599999999999999975 4444444443
No 102
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=36.62 E-value=16 Score=22.35 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=12.3
Q ss_pred ceeecccccccccceeeee
Q psy1022 220 YIRHTVNKITFSEQCYYIF 238 (245)
Q Consensus 220 ~i~h~~~k~~f~e~cyy~~ 238 (245)
||+.-+=--.||.-|||-|
T Consensus 13 ~ikrrilidnfsnfc~ynf 31 (37)
T PF08199_consen 13 FIKRRILIDNFSNFCHYNF 31 (37)
T ss_pred HHHHHHhhhccccceeeee
Confidence 3433333347999999976
No 103
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=35.54 E-value=55 Score=28.54 Aligned_cols=46 Identities=28% Similarity=0.503 Sum_probs=32.5
Q ss_pred cCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCC-CCcEEEEEEecCC
Q psy1022 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKCWD 127 (245)
Q Consensus 79 ~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~-~~~V~L~V~r~~~ 127 (245)
..++.+|+.|++|.+... ..+.|.+.|+.+..+ +....+++.+.|.
T Consensus 126 vArVk~Gqiifei~~~~~---~~~~AkeALrrA~~KlP~~~kIv~~~~wg 172 (213)
T PTZ00173 126 CARVRIGQILLSIRTKEA---YVPQAIEALRRAKYKFPGRQKIVVSNKWG 172 (213)
T ss_pred EEEECcCCEEEEEecccC---CHHHHHHHHHHhcccCCCeEEEEEecccC
Confidence 446899999999977553 567788888877544 5556777766544
No 104
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=35.45 E-value=38 Score=23.07 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=26.0
Q ss_pred chhhhhhhhhcccchh--hHHHHHHHHHHhhccce
Q psy1022 189 ADVVDWLDKHVEGFTD--RREARKYASQMLKFGYI 221 (245)
Q Consensus 189 ~d~v~wl~~~v~g~~~--r~~a~~~a~~~l~~~~i 221 (245)
.++++.|+++.+.-.+ +++...|-..|.++|+|
T Consensus 33 ~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~~glI 67 (68)
T PF05402_consen 33 EEIVDALAEEYDVDPEEAEEDVEEFLEQLREKGLI 67 (68)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCcCc
Confidence 7899999999876655 88999999999999998
No 105
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=34.52 E-value=93 Score=26.19 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=45.2
Q ss_pred CCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCc-EEEEEEecCCCCCCCCcccCCCCCcCcCCCCCcccccccccC
Q psy1022 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP-IKLVVAKCWDPNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRG 159 (245)
Q Consensus 82 L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~-V~L~V~r~~~~~~~~~~~~~r~~p~~p~d~~~~~~~~~~~~~ 159 (245)
+..|+.++-|+++--+|-|...++++|++. +.. +.+.+.-...........+ +-..+..++-..|.+|-|++-.
T Consensus 102 l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~---Ga~vv~~~vlid~~~~~~~~~~~-~~~sl~~~~~~~~~~~~c~~~~ 176 (187)
T TIGR01367 102 VKPGEKFVAVEDVVTTGGSLLEAIRAIEGQ---GGQVVGLACIIDRSQGGKPDSGV-PLMSLKELEFPTYDSHECPLCL 176 (187)
T ss_pred CCCCCEEEEEEeeecchHHHHHHHHHHHHc---CCeEEEEEEEEECcCCCcccCCC-CEEEEEEEeccccCcccCChhh
Confidence 568999999999999999999999999987 333 3222221111011111111 1122223555788888888743
No 106
>KOG2239|consensus
Probab=33.46 E-value=44 Score=28.84 Aligned_cols=38 Identities=32% Similarity=0.545 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhccceeec-cccccc-------------------ccceeeeecccccC
Q psy1022 207 EARKYASQMLKFGYIRHT-VNKITF-------------------SEQCYYIFGDLLQQ 244 (245)
Q Consensus 207 ~a~~~a~~~l~~~~i~h~-~~k~~f-------------------~e~cyy~~~~~~~~ 244 (245)
..+|-=..|+|.||=.++ |..+|| .-.-|.|||+.|.+
T Consensus 65 sekKark~m~KLGlk~v~gV~RVti~ksKNilfvI~kPdVyKsp~sdtYiiFGeakie 122 (209)
T KOG2239|consen 65 SEKKARKAMLKLGLKQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIIFGEAKIE 122 (209)
T ss_pred HHHHHHHHHHhcCCccccceeEEEEEecccEEEEecCCceeccCCCceEEEecccccc
Confidence 334444568899965544 222221 34579999998753
No 107
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=32.96 E-value=71 Score=25.82 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=27.4
Q ss_pred CCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccC
Q psy1022 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (245)
Q Consensus 72 ~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~ 113 (245)
.|.+..-.-++.+|+.|++|.+ .+.+.|.+.|+.+..
T Consensus 87 KG~~~~~varVk~G~iifEi~~-----~~~~~a~~al~~a~~ 123 (138)
T PRK09203 87 KGSPEYWVAVVKPGRILFEIAG-----VSEELAREALRLAAA 123 (138)
T ss_pred CCCCcEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHhc
Confidence 3445445557899999999988 456788888888743
No 108
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=32.32 E-value=35 Score=30.14 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=29.9
Q ss_pred cchhhhhhhhh------------cccchhhHHHHHHHHHHhhccceeeccccc
Q psy1022 188 SADVVDWLDKH------------VEGFTDRREARKYASQMLKFGYIRHTVNKI 228 (245)
Q Consensus 188 ~~d~v~wl~~~------------v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~ 228 (245)
+.|.|+||.++ +..+.||.||..++-.|++.+|| |-|.|+
T Consensus 24 gkr~vraL~s~~y~~~~~k~~~~lp~i~~r~da~~~~~~Li~~~l~-~R~~k~ 75 (232)
T TIGR00869 24 VKRFVRALHSEEYANKSAKQPEIYPTIPSRLEAIEIFILLIKNQMV-IRVDKL 75 (232)
T ss_pred HHHHHHHHhCcHhhhhcccCcccCCCCCCHHHHHHHHHHHHHcCCE-EEEEec
Confidence 36778887752 23567799999999999999998 444443
No 109
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=31.30 E-value=36 Score=25.29 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=27.2
Q ss_pred hhhcccchhhHHHHHHHHHHhhccceeeccccc
Q psy1022 196 DKHVEGFTDRREARKYASQMLKFGYIRHTVNKI 228 (245)
Q Consensus 196 ~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~ 228 (245)
.+.|--|++..||-+||..|-..+|-.-+|--+
T Consensus 23 ~~~Vl~FE~edDA~RYa~lLEAqd~~~p~Ve~i 55 (86)
T PF11360_consen 23 RNVVLMFEDEDDAERYAGLLEAQDFPDPTVEEI 55 (86)
T ss_pred CCEEEEEccHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 566778999999999999999999876666443
No 110
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=31.18 E-value=39 Score=26.40 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=26.1
Q ss_pred chhhHHHHHHHHHHhhccceeecccccccccceeeeecccc
Q psy1022 202 FTDRREARKYASQMLKFGYIRHTVNKITFSEQCYYIFGDLL 242 (245)
Q Consensus 202 ~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~cyy~~~~~~ 242 (245)
+-|+.+|+++|..||+.+++ =-||-+-==+-.|+==|+.+
T Consensus 18 ~p~~e~A~~ia~~Lve~rLa-ACvni~p~i~S~Y~W~G~i~ 57 (112)
T PRK10645 18 APDEATAQDLAAKVLAEKLA-ACVTLLPGATSLYYWEGKLE 57 (112)
T ss_pred CCCHHHHHHHHHHHHHCCee-EEEecCCCeeEEEEECCEEe
Confidence 45789999999999999998 34443221233444444443
No 111
>PF15129 FAM150: FAM150 family
Probab=30.72 E-value=12 Score=29.31 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.0
Q ss_pred hhccceeecccccccccceeee
Q psy1022 216 LKFGYIRHTVNKITFSEQCYYI 237 (245)
Q Consensus 216 l~~~~i~h~~~k~~f~e~cyy~ 237 (245)
+|..||+|.-.-+.||-+|---
T Consensus 67 ~k~kfi~h~tgpl~fs~~c~k~ 88 (123)
T PF15129_consen 67 MKDKFIKHLTGPLYFSPKCSKH 88 (123)
T ss_pred hHHHHHHHhCCceeeCHHHHHH
Confidence 5788999999999999999533
No 112
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=30.55 E-value=90 Score=26.34 Aligned_cols=47 Identities=30% Similarity=0.396 Sum_probs=29.4
Q ss_pred ChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCC-CCcEEEEEE
Q psy1022 74 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVA 123 (245)
Q Consensus 74 g~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~-~~~V~L~V~ 123 (245)
.+.....++++|+.|++|.++.. +.+.|.+.|+.+.++ +....+++.
T Consensus 118 ~p~~wva~Vk~G~ilfei~~~~~---~~~~akeAlr~a~~KLP~k~kiv~~ 165 (172)
T PRK04199 118 KPVGTAARVEKGQKIFTVRVNPE---HLEAAKEALRRAAMKLPTPCRIVVE 165 (172)
T ss_pred CccEEEEEECcCCEEEEEEecCC---CHHHHHHHHHHhhccCCCcEEEEEe
Confidence 34334446799999999976544 466777888776433 333444444
No 113
>PRK01285 pyruvoyl-dependent arginine decarboxylase; Reviewed
Probab=29.92 E-value=34 Score=28.38 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=20.5
Q ss_pred cccchhhHHHHHHHHHHhhccce
Q psy1022 199 VEGFTDRREARKYASQMLKFGYI 221 (245)
Q Consensus 199 v~g~~~r~~a~~~a~~~l~~~~i 221 (245)
++|+-+..||++.|..||+.+|=
T Consensus 100 ~~g~~~~e~ae~~a~~Ml~~~~~ 122 (155)
T PRK01285 100 HHGFGEKEEAEDLAATMLEEGFK 122 (155)
T ss_pred eccCCCHHHHHHHHHHHHHHHHH
Confidence 48888999999999999999874
No 114
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=29.84 E-value=87 Score=30.62 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=34.1
Q ss_pred hcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcEE
Q psy1022 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIK 119 (245)
Q Consensus 78 ~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V~ 119 (245)
..|.+.+||.++-|+++-.+|-|..+++++|++. +..|.
T Consensus 386 ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~a---G~~V~ 424 (477)
T PRK05500 386 IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSA---GLNVR 424 (477)
T ss_pred EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHC---CCEEE
Confidence 4567889999999999999999999999999998 55543
No 115
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=29.54 E-value=40 Score=26.02 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=25.0
Q ss_pred ChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 74 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 74 g~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
.+....-++.+|+.|+++.+.+. .+.|.+.|+.+
T Consensus 68 ~~~~~~a~v~~G~iifEi~~~~~----~~~~~~alk~a 101 (112)
T cd01433 68 KPEGWVARVKPGQILFEVRGVPE----EEVAKEALRRA 101 (112)
T ss_pred CccEEEEEECCCCEEEEEeCcCc----HHHHHHHHHHh
Confidence 33334445888999999998876 66778888776
No 116
>TIGR00286 arginine decarboxylase, pyruvoyl-dependent. The three copies present in Archeoglobus fulgidus, one of which is only half-length and excluded from the seed alignment, are very closely related and clearly arose by duplication after the separation from well-studied species. The other completed archaeal genomes each contain a single copy. The lone, weak (below trusted cutoff) hit to a non-archaeal sequence is to an uncharacterized protein of Chlamydia, with the greatest similarity in the amino-terminal half of the model.
Probab=28.40 E-value=37 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.6
Q ss_pred hhhhhhcccchhhHHHHHHHHHHhhccc
Q psy1022 193 DWLDKHVEGFTDRREARKYASQMLKFGY 220 (245)
Q Consensus 193 ~wl~~~v~g~~~r~~a~~~a~~~l~~~~ 220 (245)
-++++| +|+.+..||++||..|++.+|
T Consensus 93 G~i~E~-~g~~~~e~a~~~a~~~a~~~~ 119 (152)
T TIGR00286 93 GYIMEY-SGKCSKEDAEKHAREMAKYML 119 (152)
T ss_pred eEEEEe-ecCCCHHHHHHHHHHHHHHHH
Confidence 356665 788888999999999999996
No 117
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=27.21 E-value=1.2e+02 Score=26.19 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=32.8
Q ss_pred hcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCCCCcE
Q psy1022 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118 (245)
Q Consensus 78 ~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~~~~V 118 (245)
.-|....|++++-|+++-..|-+.-+|++.|++. +..|
T Consensus 105 ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~---G~~V 142 (201)
T COG0461 105 IEGGEVKGEKVVVVEDVITTGGSILEAVEALREA---GAEV 142 (201)
T ss_pred eEecCCCCCEEEEEEecccCCHhHHHHHHHHHHc---CCeE
Confidence 3455669999999999999999999999999998 5554
No 118
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=27.07 E-value=1e+02 Score=26.02 Aligned_cols=47 Identities=32% Similarity=0.396 Sum_probs=30.2
Q ss_pred hhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccCC-CCcEEEEEEe
Q psy1022 75 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAK 124 (245)
Q Consensus 75 ~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~~-~~~V~L~V~r 124 (245)
|.....++++|..|++|.++.- +.+.|.+.|+.+.++ +....+++..
T Consensus 119 p~~wvArVk~Gqiifei~~~~~---~~~~AkeAlr~A~~KLP~~~kiv~~~ 166 (172)
T TIGR00279 119 PVGTAARVKIGQKIFSVWTKPS---NFDVAKEALRRAAMKFPVPCKIVIEK 166 (172)
T ss_pred ccEEEEEECcCCEEEEEEeecC---CHHHHHHHHHHHhccCCCcEEEEEec
Confidence 3333445799999999977642 466788888776443 3445555543
No 119
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=26.89 E-value=55 Score=26.04 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=26.2
Q ss_pred CCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 72 ~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
.|.+..-.-++.+|+.|++|.+ .+.+.|.+.|+.+
T Consensus 86 KG~~~~~varV~~G~ilfEi~~-----~~~~~a~~al~~a 120 (126)
T TIGR01164 86 KGNPEYWVAVVKPGKILFEIAG-----VPEEVAREAFRLA 120 (126)
T ss_pred CCCCCEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHH
Confidence 4445555557999999999988 4567888888876
No 120
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=26.72 E-value=1.2e+02 Score=26.12 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 80 G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
|.+..|+.++-|+++-.+|-|..+++++|+++
T Consensus 113 g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~ 144 (206)
T PRK13809 113 GLFTPGQTCLVINDMVSSGKSIIETAVALEEE 144 (206)
T ss_pred cccCCCCEEEEEEeccccCHHHHHHHHHHHHC
Confidence 45789999999999999999999999999998
No 121
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=26.52 E-value=47 Score=24.80 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhcccee
Q psy1022 205 RREARKYASQMLKFGYIR 222 (245)
Q Consensus 205 r~~a~~~a~~~l~~~~i~ 222 (245)
||.++|+|..|++.||.|
T Consensus 15 ~k~r~kv~k~L~~~G~~r 32 (95)
T TIGR01573 15 RKRRRKLRKLLEKYGLQR 32 (95)
T ss_pred HHHHHHHHHHHHHcchhh
Confidence 689999999999999874
No 122
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.66 E-value=1.2e+02 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 81 RIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 81 ~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
.+.+||+++-|+++--+|-|...++++++++
T Consensus 113 ~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~a 143 (191)
T TIGR01744 113 FLSDQDRVLIIDDFLANGQAAHGLVDIAKQA 143 (191)
T ss_pred hCCCcCEEEEEEehhccChHHHHHHHHHHHC
Confidence 3779999999999999999999999999998
No 123
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=25.29 E-value=1.3e+02 Score=25.01 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=30.6
Q ss_pred cCCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 79 ~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
.|.+..|+.++-|+++--+|-|..+++++|+++
T Consensus 101 ~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~ 133 (176)
T PRK13812 101 EGRLDEGEEVVVLEDIATTGQSAVDAVEALREA 133 (176)
T ss_pred EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHC
Confidence 356889999999999999999999999999998
No 124
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=24.20 E-value=1.3e+02 Score=24.67 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 80 G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
|.+..|+.++-|+++--+|-|..+++++|+++
T Consensus 103 g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~ 134 (173)
T TIGR00336 103 GELLEGDKVVVVEDVITTGTSILEAVEIIQAA 134 (173)
T ss_pred cCCCCCCEEEEEeccccChHHHHHHHHHHHHc
Confidence 45789999999999999999999999999998
No 125
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=24.09 E-value=1.3e+02 Score=25.54 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 81 RIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 81 ~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
.+.+||+++-|+++--+|-|...++++++++
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~a 143 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQA 143 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHC
Confidence 4889999999999999999999999999998
No 126
>PLN02293 adenine phosphoribosyltransferase
Probab=23.98 E-value=1.4e+02 Score=25.16 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=30.0
Q ss_pred CCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 80 G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
|.+..|++++-|+++--+|-|...++++|++.
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~ 151 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERA 151 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHC
Confidence 45789999999999999999999999999998
No 127
>smart00815 AMA-1 Apical membrane antigen 1. Apical membrane antigen 1 (AMA-1) is a Plasmodium asexual blood-stage antigen. It has been suggested that positive selection operates on the AMA-1 gene in regions coding for antigenic sites.
Probab=23.83 E-value=1.5e+02 Score=26.31 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCccccCCCCCcccccCCCcchhhhhhhhhcccchhhHHHHHHHHHHhhcc----ceeecccccccccce
Q psy1022 159 GDGFPLRPPSVSTLTSTSSSLTSSIAETESADVVDWLDKHVEGFTDRREARKYASQMLKFG----YIRHTVNKITFSEQC 234 (245)
Q Consensus 159 ~~~~~~~~p~~~~~~~t~~~~~~~~p~~~~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~----~i~h~~~k~~f~e~c 234 (245)
|..+|...+..|.++. .+|..|.++|++ +.|--.-..||..|.-.+ .-||-.==-.=++.|
T Consensus 72 G~a~p~~~~~~Spis~--------------~~lk~~~~~~~~-~ndL~~Ca~~a~~~vp~~n~ns~YR~PaVYD~k~~~C 136 (240)
T smart00815 72 GFAFPETNVLLSPISA--------------DELKLMYKNHEN-LNDLSLCAEHASNYVPGNNKNSKYRYPFVYDSDDKLC 136 (240)
T ss_pred cccCCccccccCcCCH--------------HHHHHHhccccc-chhHHHHHHHHhhcccCCCCCceeecceEEcCCCCeE
Confidence 4466666566666654 899999999998 999999999999998744 233332222235667
Q ss_pred ee
Q psy1022 235 YY 236 (245)
Q Consensus 235 yy 236 (245)
|.
T Consensus 137 ~I 138 (240)
T smart00815 137 YI 138 (240)
T ss_pred EE
Confidence 54
No 128
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=23.62 E-value=80 Score=22.80 Aligned_cols=33 Identities=6% Similarity=0.204 Sum_probs=28.4
Q ss_pred chhhhhhhhhcccchh--hHHHHHHHHHHhhcccee
Q psy1022 189 ADVVDWLDKHVEGFTD--RREARKYASQMLKFGYIR 222 (245)
Q Consensus 189 ~d~v~wl~~~v~g~~~--r~~a~~~a~~~l~~~~i~ 222 (245)
.++++=|.++.+. .+ ..+...|-..|.++|+|+
T Consensus 47 ~eI~~~L~~~Y~~-~e~~~~dV~~fL~~L~~~gli~ 81 (81)
T TIGR03859 47 AEIIQELAQRFPA-AEEIEDDVIAFLAVARAKHWLE 81 (81)
T ss_pred HHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHCcCcC
Confidence 5777789999988 66 688899999999999995
No 129
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=23.26 E-value=1.2e+02 Score=19.18 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHhhccceeecccccccccceeeeecc
Q psy1022 203 TDRREARKYASQMLKFGYIRHTVNKITFSEQCYYIFGD 240 (245)
Q Consensus 203 ~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~cyy~~~~ 240 (245)
..+..++++-..|.+.|+|.-..+ ...+||-+.+
T Consensus 22 is~~~v~~~l~~L~~~g~i~~~~~----~~~~~~~~~~ 55 (66)
T smart00418 22 LSQSTVSHHLKKLREAGLVESRRE----GKRVYYSLTD 55 (66)
T ss_pred CCHHHHHHHHHHHHHCCCeeeeec----CCEEEEEEch
Confidence 467889999999999999974443 2345565544
No 130
>COG4876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.10 E-value=63 Score=25.46 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHhhcccee
Q psy1022 203 TDRREARKYASQMLKFGYIR 222 (245)
Q Consensus 203 ~~r~~a~~~a~~~l~~~~i~ 222 (245)
..|..|-..|..|||.||..
T Consensus 18 ~~r~kaiei~naml~egy~e 37 (138)
T COG4876 18 IKRQKAIEIANAMLKEGYLE 37 (138)
T ss_pred HHHHHHHHHHHHHHHcchhh
Confidence 35899999999999999963
No 131
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=23.06 E-value=1e+02 Score=21.78 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=23.4
Q ss_pred CCCCCEEEeeCCeecccCCHHHHHHHHH
Q psy1022 82 IEPGDMILQVNDINFENMSNDEAVRVLR 109 (245)
Q Consensus 82 L~~GD~Il~VNg~~l~~~t~~eav~~Lr 109 (245)
+.+||.+|-=.|.-++-++.++|.+.+.
T Consensus 38 v~~Gd~VLVHaG~Ai~~ideeeA~e~l~ 65 (68)
T PF01455_consen 38 VKVGDYVLVHAGFAIEKIDEEEAEETLD 65 (68)
T ss_dssp B-TT-EEEEETTEEEEEE-HHHHHHHHH
T ss_pred CCCCCEEEEecChhheeCCHHHHHHHHH
Confidence 8899999999999999999999999875
No 132
>KOG0404|consensus
Probab=22.73 E-value=35 Score=30.57 Aligned_cols=40 Identities=20% Similarity=0.535 Sum_probs=29.5
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHhhccceeecccccccccceeeeeccc
Q psy1022 188 SADVVDWLDKHVEGFTDRREARKYASQMLKFGYIRHTVNKITFSEQCYYIFGDL 241 (245)
Q Consensus 188 ~~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~k~~f~e~cyy~~~~~ 241 (245)
+.|+.|-+ |++|-+|-.+ .|.-||+|+.||-+|+-+|-|.
T Consensus 69 G~~l~d~m---------rkqs~r~Gt~-----i~tEtVskv~~sskpF~l~td~ 108 (322)
T KOG0404|consen 69 GPELMDKM---------RKQSERFGTE-----IITETVSKVDLSSKPFKLWTDA 108 (322)
T ss_pred cHHHHHHH---------HHHHHhhcce-----eeeeehhhccccCCCeEEEecC
Confidence 46666543 5556665544 5678999999999999999774
No 133
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=22.60 E-value=1e+02 Score=20.15 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=23.3
Q ss_pred hhhhcccchhhHHHHHHHHHHhhccceeeccc
Q psy1022 195 LDKHVEGFTDRREARKYASQMLKFGYIRHTVN 226 (245)
Q Consensus 195 l~~~v~g~~~r~~a~~~a~~~l~~~~i~h~~~ 226 (245)
|++|+ |+ .|--+++.-..|-+.|||.+.-+
T Consensus 31 la~~~-~i-s~~~v~~~l~~L~~~G~i~~~~~ 60 (66)
T cd07377 31 LAEEL-GV-SRTTVREALRELEAEGLVERRPG 60 (66)
T ss_pred HHHHH-CC-CHHHHHHHHHHHHHCCCEEecCC
Confidence 45554 45 68999999999999999976544
No 134
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=22.55 E-value=74 Score=22.84 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=15.8
Q ss_pred eCCeecccCCHHHHHHHHHhccC
Q psy1022 91 VNDINFENMSNDEAVRVLREVVQ 113 (245)
Q Consensus 91 VNg~~l~~~t~~eav~~Lr~~~~ 113 (245)
|..+.+.|+|.+|+.+.|+...+
T Consensus 46 iG~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 46 IGPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp TEEEE-TT--HHHHHHHHHHHHT
T ss_pred cceEEECCCCHHHHHHHHHHHHH
Confidence 44578889999999999987643
No 135
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=21.86 E-value=79 Score=25.98 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=26.7
Q ss_pred CChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhccC
Q psy1022 73 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (245)
Q Consensus 73 Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~~~ 113 (245)
|.|..-..++.+|..|++|.|++-.- |.+.|+.+.+
T Consensus 91 G~pegwaArVkpG~vlfei~g~~e~~-----A~EAlr~Aa~ 126 (146)
T COG0197 91 GKPEGWAARVKPGRVLFEIAGVPEEL-----AREALRRAAA 126 (146)
T ss_pred CCccEEEEEecCCcEEEEEecCcHHH-----HHHHHHHHhh
Confidence 55555566799999999999877643 7777777643
No 136
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.49 E-value=13 Score=28.01 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=13.1
Q ss_pred cccccceeeeeccccc
Q psy1022 228 ITFSEQCYYIFGDLLQ 243 (245)
Q Consensus 228 ~~f~e~cyy~~~~~~~ 243 (245)
+.=+|.||-.|-|+|-
T Consensus 21 L~n~eecy~FfdDlcT 36 (100)
T COG4496 21 LENLEECYAFFDDLCT 36 (100)
T ss_pred hccHHHHHHHHHhhcC
Confidence 4457899999999994
No 137
>PF08820 DUF1803: Domain of unknown function (DUF1803); InterPro: IPR014924 This small protein is found in one or two copies in bacteria. The function of this is unknown.
Probab=21.22 E-value=85 Score=23.80 Aligned_cols=35 Identities=26% Similarity=0.541 Sum_probs=24.7
Q ss_pred chhhhhhhhhcccchhh---------HHHHHHHHHHhhccceee
Q psy1022 189 ADVVDWLDKHVEGFTDR---------REARKYASQMLKFGYIRH 223 (245)
Q Consensus 189 ~d~v~wl~~~v~g~~~r---------~~a~~~a~~~l~~~~i~h 223 (245)
-|+++.|+.|++.+.=| +.--++-..|.++|||.-
T Consensus 16 ~~Li~Yl~k~~~~~lLR~iKk~f~~qk~~D~fie~li~~GYI~r 59 (93)
T PF08820_consen 16 YDLINYLLKYMTDFLLRFIKKDFPKQKRLDIFIEALIKLGYIER 59 (93)
T ss_pred HHHHHHHHHcCCHhhHHHHHHhhccccchhHHHHHHHHcCCeEe
Confidence 47888999998663221 222357789999999976
No 138
>TIGR01765 tspaseT_teng_N transposase, putative, N-terminal domain. This model represents the N-terminal region of a family of putative transposases found in the largest copy number in Thermoanaerobacter tengcongensis. The three homologs in Bacillus anthracis are each split into two ORFs and This model represents the upstream ORF.
Probab=20.99 E-value=42 Score=23.72 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhccceeeccc--ccccccceeee
Q psy1022 205 RREARKYASQMLKFGYIRHTVN--KITFSEQCYYI 237 (245)
Q Consensus 205 r~~a~~~a~~~l~~~~i~h~~~--k~~f~e~cyy~ 237 (245)
=++|.+||++.+=.| ++.| |.....-||+=
T Consensus 23 f~~A~n~~~~~~~e~---~~~~~~k~~L~~l~y~~ 54 (73)
T TIGR01765 23 FSSAVNFVIKRLLEG---KSHSELKKELQRLYYLN 54 (73)
T ss_pred HHHHHHHHHHHHHCC---CChhHHHHHHHHHHhhH
Confidence 368999998888777 6677 77777778763
No 139
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=20.61 E-value=75 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.467 Sum_probs=22.5
Q ss_pred chhhhhhhhhcccchhhHHHHHHHHHHh
Q psy1022 189 ADVVDWLDKHVEGFTDRREARKYASQML 216 (245)
Q Consensus 189 ~d~v~wl~~~v~g~~~r~~a~~~a~~~l 216 (245)
+|+.+||.+-||.-..++..-..|-.|.
T Consensus 36 seleeWl~~e~E~~~q~~reEslaDDLF 63 (65)
T PF08599_consen 36 SELEEWLRQEMEEQRQQAREESLADDLF 63 (65)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999998777776666776664
No 140
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=20.50 E-value=46 Score=22.44 Aligned_cols=24 Identities=33% Similarity=0.738 Sum_probs=17.4
Q ss_pred chhhhhhhhhcccchhhHHHHHHHHHHhhccc
Q psy1022 189 ADVVDWLDKHVEGFTDRREARKYASQMLKFGY 220 (245)
Q Consensus 189 ~d~v~wl~~~v~g~~~r~~a~~~a~~~l~~~~ 220 (245)
.||.+||..+ || .+|+..+..+|+
T Consensus 7 ~~v~~WL~~~--gl------~~y~~~f~~~~i 30 (66)
T PF07647_consen 7 EDVAEWLKSL--GL------EQYADNFRENGI 30 (66)
T ss_dssp HHHHHHHHHT--TC------GGGHHHHHHTTC
T ss_pred HHHHHHHHHC--Cc------HHHHHHHHHcCC
Confidence 6889999977 77 356666666664
No 141
>PF01862 PvlArgDC: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); InterPro: IPR002724 Arginine decarboxylase (4.1.1.19 from EC) catalyses the interconversion of arginine and agmatine plus carbon dioxide []. It requires a pyruvoyl group for its activity. Archaeoglobus fulgidus contains three copies of this 80-residue domain, all of which are very closely related.; GO: 0008792 arginine decarboxylase activity, 0006527 arginine catabolic process; PDB: 1N13_I 1MT1_K 1N2M_D 2QQD_G 2QQC_I.
Probab=20.34 E-value=48 Score=27.67 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=20.8
Q ss_pred hhhhhhhhhcccchhhHH-HHHHHHHHhhccce
Q psy1022 190 DVVDWLDKHVEGFTDRRE-ARKYASQMLKFGYI 221 (245)
Q Consensus 190 d~v~wl~~~v~g~~~r~~-a~~~a~~~l~~~~i 221 (245)
+.--|+.+| +|+-+..+ |++||..|++.+|=
T Consensus 94 ~~~G~i~E~-~g~~~~~e~~~~~a~~~a~~~~~ 125 (164)
T PF01862_consen 94 SIGGYISEY-HGFGETEEDAEEYAEDMAAEMLE 125 (164)
T ss_dssp TS-BEEEEE-EESS-HHH-HHHHHHHHHHHHHH
T ss_pred CCCEEEEEE-eecCCcHHHHHHHHHHHHHHHHH
Confidence 334467776 66666666 99999888888753
No 142
>CHL00044 rpl16 ribosomal protein L16
Probab=20.03 E-value=68 Score=25.85 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=25.8
Q ss_pred CCChhhhcCCCCCCCEEEeeCCeecccCCHHHHHHHHHhc
Q psy1022 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (245)
Q Consensus 72 ~Gg~A~~~G~L~~GD~Il~VNg~~l~~~t~~eav~~Lr~~ 111 (245)
+|.+..-.-++.+|+.|+++.|++. +.|.+.|+.+
T Consensus 87 KG~~~~~va~V~~G~ilfEi~g~~~-----~~ak~al~~a 121 (135)
T CHL00044 87 KGSPEYWVAVVKPGRILYEMGGVSE-----TIARAAIKIA 121 (135)
T ss_pred CCCccEEEEEECCCcEEEEEeCCCH-----HHHHHHHHHH
Confidence 4455555567999999999988653 5677888776
Done!