BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10221
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class
Of Transcription Factors, The Lim-Homeodomain Proteins,
In Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class
Of Transcription Factors, The Lim-Homeodomain Proteins,
In Neural Cell Type Specification
Length = 169
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 6 ITELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQD 64
+ ++ C C + I DK++L+V D+ WH+ CL+C CQ+ L DR CF + +VYCK+D
Sbjct: 3 MQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR---CFSRAGSVYCKED 59
Query: 65 YAK 67
+ K
Sbjct: 60 FFK 62
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 7 TELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYA 66
E+ C C + I D+++L+ D+ WH++CL+C C + L CF + E+VYCK D+
Sbjct: 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER--CFSRGESVYCKDDFF 61
Query: 67 K 67
K
Sbjct: 62 K 62
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 8 ELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
E+ C C + I D+++L+ D+ WH++CL+C C + L CF + E+VYCK D+ K
Sbjct: 59 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER--CFSRGESVYCKDDFFK 116
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The
N- Terminal Lim Domain Of Lmo4
Length = 122
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 10 RYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDYAK 67
+ C CG I D++LL D WH++CL+C CQ L D S + K + C+ DY +
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 64
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4
Lim Domains 1 And 2 With The Lim Interacting Domain Of
Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4
Lim Domains 1 And 2 With The Lim Interacting Domain Of
Ldb1
Length = 195
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 10 RYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDYAK 67
+ C CG I D++LL D WH++CL+C CQ L D S + K + C+ DY +
Sbjct: 4 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 62
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 10 RYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDYAK 67
+ C CG I D++LL D WH++CL+C CQ L D S + K + C+ DY +
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 64
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 10 RYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDYAK 67
+ C CG I D++LL D WH++CL+C CQ L D S + K + C+ DY +
Sbjct: 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding
Lim Protein 3
Length = 80
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 6 ITELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
I +C C E I L DK WH C +C C ++L KD YC+ DY
Sbjct: 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGE--YISKDGVPYCESDY 69
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C ACG+S+ + + K WH C RC C L+ + K+ +YCK YAK
Sbjct: 39 CSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLEST-TLTEKEGEIYCKGCYAK 93
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of
MlpCRP3
Length = 58
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CG+S+ + K WH C RC IC L+ + KD +YCK YAK
Sbjct: 2 CPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLE-STNVTDKDGELYCKVCYAK 56
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CG+++ + + KSWH C RC C L+ + KD +YCK YAK
Sbjct: 11 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLES-TTLADKDGEIYCKGCYAK 65
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CG+++ + + KSWH C RC C L+ + KD +YCK YAK
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLES-TTLADKDGEIYCKGCYAK 172
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 6 ITELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
+ L C C + I D+ +L+ K++H C C +C LD P ++C +D+
Sbjct: 12 VATLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDF 70
Query: 66 AK 67
+
Sbjct: 71 HR 72
>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDR-HPSCFIKDEAVYCKQDYAK 67
C C ++I D+Y L+ D+ WH CL C +C L + K C++DY +
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 62
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
Length = 131
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDR-HPSCFIKDEAVYCKQDYAK 67
C C ++I D+Y L+ D+ WH CL C +C L + K C++DY +
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15
Minimized Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CG+S+ + + K WH C RC C L+ + K+ +YCK YAK
Sbjct: 39 CSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLEST-TLTEKEGEIYCKGCYAK 93
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And
Glycine- Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C ACG ++ +Q +S+H C C +C+ LD + I D VYCK Y K
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDS-TTVAIHDAEVYCKSCYGK 64
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL 46
C CGE I + +++ + SWH +C RC +CQ VL
Sbjct: 8 CHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVL 41
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of
MlpCRP3
Length = 60
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C AC +++ +Q + +S+H C C C+ LD + + +YCK Y +
Sbjct: 4 CGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDS-TTVAAHESEIYCKVCYGR 58
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 12 CVACGESITD-KYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQD 64
C +C + I + ++V DK +H +C +C CQ + + + C+QD
Sbjct: 11 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQD 64
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 12 CVACGESITD-KYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQD 64
C +C + I + ++V DK +H +C +C CQ + + + C+QD
Sbjct: 13 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQD 66
>pdb|2EHE|A Chain A, Solution Structure Of The First Lim Domain From Human
Four And A Half Lim Domains Protein 3
Length = 82
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 21 DKYLLQVSDKSWHAQCLRCCICQLVLDRHP 50
D L D+ +H C RCC CQ L P
Sbjct: 28 DSRELFYEDRHFHEGCFRCCRCQRSLADEP 57
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCK 62
C CG I +++ DK H +C C C L L + F++ E +YC+
Sbjct: 28 CDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNLKQKGYFFVEGE-LYCE 76
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYC 61
C C +++T + D+ WH +CL C CQ L +DE YC
Sbjct: 18 CARCSKTLTQGGVT-YRDQPWHRECLVCTGCQTPLAGQ-QFTSRDEDPYC 65
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 26.6 bits (57), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDE 57
CV C ++IT + D+ WHA C C C L ++D+
Sbjct: 8 CVKCNKAITSGGIT-YQDQPWHADCFVCVTCSKKLAGQRFTAVEDQ 52
>pdb|1X68|A Chain A, Solution Structures Of The C-Terminal Lim Domain Of
Human Fhl5 Protein
Length = 76
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 12 CVACGESI---TDKYLLQVSDKSWHAQCLRCCICQLVL 46
CVAC + I T + D WH++C C C + L
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL 45
>pdb|2CO8|A Chain A, Solution Structures Of The Lim Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 82
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-----DRHPSCFIKDEAVYCKQ 63
C CGE + L V+ +H C RC C+ L ++HP D YC Q
Sbjct: 18 CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPG----DGHFYCLQ 70
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 7 TELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYA 66
+E C C E I Q +++WH + C C +L + D+ V CK Y
Sbjct: 1 SEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPV-CKPCYV 59
Query: 67 K 67
K
Sbjct: 60 K 60
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
C C + + YL + D WH +C C C S F D +C+ Y
Sbjct: 18 CGGCNRPVLENYLSAM-DTVWHPECFVCGDCFTSFSTG-SFFELDGRPFCELHY 69
>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|B Chain B, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|C Chain C, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|D Chain D, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|E Chain E, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|F Chain F, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|G Chain G, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|H Chain H, Open Structure Of The Bk Channel Gating Ring
Length = 696
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 12/41 (29%)
Query: 11 YCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPS 51
YC AC + ITD + ++ C C+ + D HPS
Sbjct: 276 YCKACHDDITD------------PKRIKKCGCKRIEDEHPS 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.139 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,928,968
Number of Sequences: 62578
Number of extensions: 55462
Number of successful extensions: 164
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 38
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)