RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10221
(67 letters)
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 72.1 bits (176), Expect = 1e-18
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 7 TELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDY 65
+ C CG I D++LL D WH++CL+C CQ L D S + K + C+ DY
Sbjct: 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 118
Query: 66 AK 67
+
Sbjct: 119 IR 120
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 64.2 bits (156), Expect = 2e-15
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 7 TELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDY 65
+ C CG I D++LL D WH++CL+C CQ L D S + K + C+ DY
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 62
Query: 66 AK 67
+
Sbjct: 63 IR 64
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 62.8 bits (153), Expect = 2e-15
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 6 ITELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
I +C C E I L DK WH C +C C ++L KD YC+ DY
Sbjct: 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG--EYISKDGVPYCESDY 69
Query: 66 AK 67
Sbjct: 70 HA 71
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 64.2 bits (156), Expect = 6e-15
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 7 TELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYA 66
E+ C C + I D+++L+ D+ WH++CL+C C + L CF + E+VYCK D+
Sbjct: 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--RCFSRGESVYCKDDFF 115
Query: 67 K 67
K
Sbjct: 116 K 116
Score = 36.4 bits (84), Expect = 1e-04
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYL-LQVSDKSWHAQCLRCCICQLVLDRHPSCFI-KDEAVYCKQDY 65
C AC I + + D +H C C +C+ L ++ +D + CK DY
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer
protein ISL-1; protein-protein complex, LIM domain, Zn
finger, activator, D binding; 2.05A {Mus musculus} PDB:
3mmk_A
Length = 169
Score = 63.7 bits (155), Expect = 6e-15
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 7 TELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYA 66
E+ C C + I D+++L+ D+ WH++CL+C C + L CF + E+VYCK D+
Sbjct: 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--RCFSRGESVYCKDDFF 61
Query: 67 K 67
K
Sbjct: 62 K 62
Score = 35.6 bits (82), Expect = 3e-04
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYL-LQVSDKSWHAQCLRCCICQLVLDRHPSCFI-KDEAVYCKQDY 65
C AC I + + D +H C C +C+ L ++ +D + CK DY
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 123
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 62.5 bits (152), Expect = 8e-15
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 9 LRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDYAK 67
L C C ++I D+Y L+ D+ WH CL C +C L + + K C++DY +
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Score = 41.7 bits (98), Expect = 1e-06
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 12 CVACGESITDKYL-LQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C +C + I + ++V DK +H +C +C CQ + + + C+QD +
Sbjct: 69 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 125
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3
PDB: 2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 59.6 bits (144), Expect = 3e-13
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDYAK 67
C CG I D++LL D WH++CL+C CQ L D S + K + C+ DY +
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 64
Score = 39.2 bits (91), Expect = 1e-05
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 11 YCVACGESITDKYL-LQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
C ACG+SI L ++ +H +C C C+ L + +++C+ D
Sbjct: 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDR 126
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein;
NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 57.4 bits (138), Expect = 6e-13
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 9 LRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDY 65
L C C ++I D+Y L+ D+ WH CL C +C L + + K C++DY
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 60
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 56.2 bits (136), Expect = 9e-13
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C + I D+ L + K++H C C +C LD P ++C +D+ +
Sbjct: 18 CATCSQPILDRIL-RAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHR 72
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein
1, LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 51.6 bits (124), Expect = 8e-11
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 12 CVACGESIT-DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
CV C + I D + ++ WH C RC C L + + KD + C + +
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA-NETFVAKDNKILCNKCTTR 63
Score = 25.8 bits (57), Expect = 0.71
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 12 CVACGESIT-DKYLLQVSDKSWHAQCLRCCIC 42
C C ++I ++ WH C
Sbjct: 69 CKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 50.9 bits (122), Expect = 1e-10
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CG I ++ ++ D+ H +C C C L + F ++ +YC++ +
Sbjct: 18 CDKCGTGIVGVFV-KLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIYCEKHARE 71
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal
adhesion, acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 51.3 bits (123), Expect = 2e-10
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 7 TELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYA 66
+E C C E I Q +++WH + C C +L + ++ CK Y
Sbjct: 1 SEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEI-YVMVNDKPVCKPCYV 59
Query: 67 K 67
K
Sbjct: 60 K 60
Score = 34.3 bits (79), Expect = 5e-04
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 11 YCVACGESITDKYL-LQVSDKSWHA--QCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C +I + + ++ SWHA +C C C L + V+C + K
Sbjct: 65 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQK-FMPVEGMVFCSVECKK 123
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 50.2 bits (120), Expect = 3e-10
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CG I + + DK H +C C C L L + F + +YC+
Sbjct: 28 CDKCGSGIVGAVV-KARDKYRHPECFVCADCNLNL-KQKGYFFVEGELYCETHARA 81
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 48.9 bits (116), Expect = 2e-09
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 11 YCVACGESIT-DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
C +C + I + ++V DK +H +C +C CQ + + + C+QD
Sbjct: 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDI 65
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 47.0 bits (112), Expect = 4e-09
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C ACG ++ +Q +S+H C C +C+ LD + I D VYCK Y K
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLD-STTVAIHDAEVYCKSCYGK 64
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 44.6 bits (106), Expect = 2e-08
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C AC I + + K WH + C C+ H + + YC+ Y +
Sbjct: 8 CGACRRPIEGRVV-NAMGKQWHVEHFVCAKCEKPFLGHR-HYERKGLAYCETHYNQ 61
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 45.1 bits (107), Expect = 2e-08
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C + I +L KSWH + C C+ + + A+YC+ Y K
Sbjct: 28 CAHCNQVIRGPFL-VALGKSWHPEEFNCAHCKNTMAYIGF-VEEKGALYCELCYEK 81
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM-
protein 2, SLIM 2, FHL3, SLIM2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 82
Score = 44.4 bits (105), Expect = 4e-08
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 11 YCVACGESIT-DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C + I D L D+ +H C RCC CQ L P +D + C Y
Sbjct: 17 TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEP-FTCQDSELLCNDCYCS 73
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 43.9 bits (104), Expect = 4e-08
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 12 CVACGESIT-DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C ++I ++ SWH C C CQ + S KD +C Y K
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG-TKSFIPKDNQNFCVPCYEK 63
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 43.5 bits (103), Expect = 8e-08
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
C C + + YL D WH +C C C S F D +C+ Y
Sbjct: 18 CGGCNRPVLENYL-SAMDTVWHPECFVCGDCFTSFSTG-SFFELDGRPFCELHY 69
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 43.5 bits (103), Expect = 8e-08
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 12 CVACGESIT-DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C ACGE++ L+ ++WH C C C+ L S A YC Y
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSR-SFVPDKGAHYCVPCYEN 63
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 42.8 bits (101), Expect = 1e-07
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CGE I + + + + SWH +C RC +CQ VL C+ + +
Sbjct: 8 CHQCGEFIIGRVI-KAMNNSWHPECFRCDLCQEVLA-DIGFVKNAGRHLCRPCHNR 61
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 42.9 bits (101), Expect = 1e-07
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
CV C +++ L + + +H C RC C L + +YCK + +
Sbjct: 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLS-LGTYASLHGRIYCKPHFNQ 72
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 41.6 bits (98), Expect = 3e-07
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
CV C + IT + ++ WH +C C C+ L +D+ YC +
Sbjct: 8 CVQCKKPITTGGV-TYREQPWHKECFVCTACRKQLS-GQRFTARDDFAYCLNCFCD 61
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 42.7 bits (100), Expect = 7e-07
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 11 YCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CG+++ + + KSWH C RC C L+ + KD +YCK YAK
Sbjct: 117 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLEST-TLADKDGEIYCKGCYAK 172
Score = 40.8 bits (95), Expect = 5e-06
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C +++ +Q S+H C C +C+ LD + + + +YCK Y K
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLD-STTVAVHGDEIYCKSCYGK 64
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 40.4 bits (95), Expect = 9e-07
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
CV C ++IT + D+ WHA C C C L ++ YC Y
Sbjct: 8 CVKCNKAITSGGI-TYQDQPWHADCFVCVTCSKKLA-GQRFTAVEDQYYCVDCYKN 61
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 40.4 bits (95), Expect = 2e-06
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 12 CVACGESIT-DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C ++I ++ WH C C C+ V+ S F K E YC +
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG-SFFPKGEDFYCVTCHET 73
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 40.1 bits (94), Expect = 2e-06
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 12 CVACGESITDK-YLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C CGE + + D+ +H C C C+ L R + + YC+ Y
Sbjct: 8 CGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCYVA 63
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 39.6 bits (93), Expect = 3e-06
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C +++T + D+ WH +CL C CQ L +DE YC + +
Sbjct: 18 CARCSKTLTQGGV-TYRDQPWHRECLVCTGCQTPLAGQQ-FTSRDEDPYCVACFGE 71
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 39.0 bits (91), Expect = 3e-06
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 10 RYCVACGESITDKYLLQV---SDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYA 66
C C I+ + ++ WH C C C L L + + + C
Sbjct: 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRG-FLTERDDILCPDCGK 64
Query: 67 K 67
Sbjct: 65 D 65
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 39.3 bits (92), Expect = 3e-06
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
C C + + + K WH CL+C C L + YC
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLT-SGGHAEHEGKPYCNHPC 55
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 39.0 bits (91), Expect = 4e-06
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
C +C + I + + K++H C C +C+L + C++
Sbjct: 18 CFSCDQFIEGEVV-SALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 38.5 bits (90), Expect = 5e-06
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 12 CVACGESIT-DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C + ++ + + +H QC C C + + YC+ D+
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEFEGRKYCEHDFQM 69
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 38.7 bits (90), Expect = 7e-06
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 10 RYCVACGESIT---DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYA 66
CVAC + I+ + D WH++C C C + L +++ ++C++ +
Sbjct: 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQKCGS 64
Query: 67 K 67
Sbjct: 65 G 65
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 38.6 bits (90), Expect = 7e-06
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL-DRHPSCFIKDEAVYCKQDYAK 67
C C +T ++ + +H +C C C++++ D ++ +YC + + +
Sbjct: 18 CHGCSLLMTGPFM-VAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNE 73
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 38.4 bits (89), Expect = 8e-06
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHP-SCFIKDEAVYCKQDYAK 67
C CGE + L V+ +H C RC C+ L D YC Q +
Sbjct: 18 CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 37.8 bits (88), Expect = 1e-05
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDY 65
C C +++ + K WH CL+C C L D +C +
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPG-GHAEHDGKPFCHKPC 64
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 37.4 bits (87), Expect = 2e-05
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 12 CVACGESIT-DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C + ++ + + +H QC C C + + YC+ D+
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEFEGRKYCEHDFQM 69
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 35.2 bits (81), Expect = 1e-04
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 11 YCVACGESIT----DKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYA 66
C C IT ++ +SWH C C C + L E VYC
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKR-FVFHQEQVYCPDCAK 75
Query: 67 K 67
K
Sbjct: 76 K 76
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 34.3 bits (78), Expect = 3e-04
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQ 63
C +C + IT + L + +K +H C C C + +++ +++
Sbjct: 8 CDSCEKYITGRVL-EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 34.4 bits (79), Expect = 3e-04
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 12 CVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C I ++ L + +H C C L +YC + K
Sbjct: 18 CQKCHAIIDEQPL-IFKNDPYHPDHFNCANCGKELT--ADARELKGELYCLPCHDK 70
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 29.8 bits (67), Expect = 0.015
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 11 YCVACGESI-TDKYLLQVSDKSWHA--QCLRCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
C C +I + + ++ SWHA +C C C L + V+C + K
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQK-FMPVEGMVFCSVECKK 62
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 26.5 bits (59), Expect = 0.50
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 11 YCVACGESITDKYLLQVSDKSWHAQCLRCCIC 42
C C + + ++ + Q C C
Sbjct: 156 VCCTCNKIVKLNKIMLQKTSHFMHQLPPECPC 187
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 26.0 bits (57), Expect = 0.82
Identities = 7/55 (12%), Positives = 18/55 (32%)
Query: 7 TELRYCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVLDRHPSCFIKDEAVYC 61
+L + +T+ L+ ++ + R CI + + + D
Sbjct: 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 24.6 bits (53), Expect = 2.5
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 11 YCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL 46
+C+ CG+ + + ++C +C ++
Sbjct: 146 HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV 181
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 24.3 bits (53), Expect = 3.3
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 11 YCVACGESITDKYLLQVSDKSWHAQCLRCCICQLVL 46
+C+ CG+ + + ++C +C ++
Sbjct: 138 HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV 173
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 24.4 bits (53), Expect = 3.4
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 12 CVACGESITDKY 23
C AC + + +
Sbjct: 572 CPACSPKVIEAF 583
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2
PDB: 1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 23.6 bits (50), Expect = 6.1
Identities = 4/25 (16%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 28 SDKSWHAQCLRCCICQLVLDRHPSC 52
W + C + P+C
Sbjct: 32 GPLVW-STCDGGQPPAEIPCSSPTC 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.139 0.479
Gapped
Lambda K H
0.267 0.0475 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 986,157
Number of extensions: 40976
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 71
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.0 bits)