RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10221
         (67 letters)



>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 30

 Score = 39.3 bits (92), Expect = 4e-07
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 10 RYCVACGESITDKYLLQVSDKSWHAQCL 37
          + C  CG  I D++LL   D  WH++CL
Sbjct: 3  KRCAGCGGKIADRFLLYAMDSYWHSRCL 30


>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 30

 Score = 36.7 bits (85), Expect = 5e-06
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 9  LRYCVACGESITDKYLLQVSDKSWHAQC 36
          L  C  C ++I D+Y L+  D+ WH  C
Sbjct: 3  LLTCGGCQQNIGDRYFLKAIDQYWHEDC 30


>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 49

 Score = 27.0 bits (60), Expect = 0.047
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 38 RCCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
          RC  C   L+   +   KD  +YCK  YAK
Sbjct: 1  RCAKCGKSLE-STTLADKDGEIYCKGCYAK 29


>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 24.4 bits (53), Expect = 0.41
 Identities = 11/32 (34%), Positives = 12/32 (37%)

Query: 6  ITELRYCVACGESITDKYLLQVSDKSWHAQCL 37
          I    +C  C E I     L   DK WH  C 
Sbjct: 5  IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCF 36


>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 45

 Score = 23.9 bits (52), Expect = 0.74
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 12 CVACGESITDKYLLQVSDKSWHAQC 36
          C  C + I   +L+ +  KSWH + 
Sbjct: 21 CAHCNQVIRGPFLVAL-GKSWHPEE 44


>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 35

 Score = 23.1 bits (50), Expect = 0.99
 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)

Query: 12 CVACGESITDKYLLQVSDKSWHAQC 36
          C  C   + + Y L   D  WH +C
Sbjct: 11 CGGCNRPVLENY-LSAMDTVWHPEC 34


>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
          TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 22.8 bits (49), Expect = 1.5
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 9  LRYCVACGESITDKYLLQVSDKSWHAQC 36
          L  C  C + I D+ +L+   K++H  C
Sbjct: 8  LEKCATCSQPILDR-ILRAMGKAYHPGC 34


>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 34

 Score = 22.8 bits (49), Expect = 1.5
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 39 CCICQLVLDRHPSCFIKDEAVYCKQDYAK 67
           C  QL  D   S + K   + C+ DY +
Sbjct: 4  SCQAQLG-DIGTSSYTKSGMILCRNDYIR 31


>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 94

 Score = 21.6 bits (46), Expect = 9.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 9  LRYCVACGESITDKYLLQV 27
          LR  V   E I  + LL++
Sbjct: 5  LRKSVVSNEVIDKRDLLRI 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.139    0.479 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 258,901
Number of extensions: 9437
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 25
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.4 bits)